run_accession experiment_alias nominal_length sra_aspera sra_ftp submitted_md5 tax_id sra_bytes fastq_md5 sample_accession first_created fastq_ftp read_count library_strategy sample_alias library_selection fastq_bytes submitted_format scientific_name study_title sra_md5 fastq_galaxy broker_name submitted_ftp instrument_platform last_updated fastq_aspera submitted_galaxy instrument_model library_layout center_name study_accession secondary_study_accession submitted_bytes secondary_sample_accession experiment_accession library_source library_name base_count first_public run_alias nominal_sdev submitted_aspera study_alias experiment_title submission_accession sra_galaxy sample_title ERR1438900 PHESPV0110 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438900 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438900 6f1de16046d31e29e5b5bc89bf2d2003;bbc3c64402a8da71b082887843dbaa6b 1313 171232104 ea13d42e350017eff9b14f977f5f874c;87c81bc7dc5b2c608ffb65455c7f6332 SAMEA4023169 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438900/ERR1438900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438900/ERR1438900_2.fastq.gz 1906005 WGS PHESPV0110 RANDOM 114247721;117545777 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d91c661308461e028f41f4697b9522d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438900/ERR1438900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438900/ERR1438900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438900/PHESPV0110.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438900/PHESPV0110.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438900/ERR1438900_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438900/ERR1438900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438900/PHESPV0110.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438900/PHESPV0110.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120411704;123710456 ERS1194279 ERX1509278 GENOMIC 378237903 2016-06-10 PHESPV0110 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438900/PHESPV0110.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438900/PHESPV0110.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438900 PHESPV0110 ERR1438901 PHESPV0111 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438901 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438901 3a727971d19d72ce046f6ff1e7ab7573;11b212774f5769d2575d564ac784f301 1313 155545808 f705f29365eabe93f75e2ebc1d48e2b5;317c4cc53f9f347b0212c39ecb0d1906 SAMEA4023170 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438901/ERR1438901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438901/ERR1438901_2.fastq.gz 1733655 WGS PHESPV0111 RANDOM 104025857;106290318 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 899ece67530432d0dfeeecd24ca5f669 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438901/ERR1438901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438901/ERR1438901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438901/PHESPV0111.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438901/PHESPV0111.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438901/ERR1438901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438901/ERR1438901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438901/PHESPV0111.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438901/PHESPV0111.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109694499;111965931 ERS1194280 ERX1509279 GENOMIC 344100778 2016-06-10 PHESPV0111 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438901/PHESPV0111.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438901/PHESPV0111.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438901 PHESPV0111 ERR1438908 PHESPV0118 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438908 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438908 fa3064c8b39c671abaf784ca34632d07;b35cb51c2f0ee46b6c1e711634ebff60 1313 146150375 6d14d486229bac2fb970a3d1b8c39dd6;af8338feb3ed0350538fa7ae70792755 SAMEA4023177 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438908/ERR1438908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438908/ERR1438908_2.fastq.gz 1624505 WGS PHESPV0118 RANDOM 98293624;99721651 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 463966665bdf6336f130a67f20bcab33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438908/ERR1438908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438908/ERR1438908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438908/PHESPV0118.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438908/PHESPV0118.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438908/ERR1438908_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438908/ERR1438908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438908/PHESPV0118.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438908/PHESPV0118.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103663339;105100743 ERS1194287 ERX1509286 GENOMIC 322580540 2016-06-10 PHESPV0118 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438908/PHESPV0118.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438908/PHESPV0118.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438908 PHESPV0118 ERR1438873 PHESPV0083 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438873 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438873 1a933069c44a7388a41be99ca357c3ef;799354102bab3b410c1a075d8d6c0fed 1313 79019440 2d87fd3787ed72843d02078219e71917;aeabf6446454fca65c3f1518acc9e0c0 SAMEA4023142 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438873/ERR1438873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438873/ERR1438873_2.fastq.gz 921370 WGS PHESPV0083 RANDOM 52689180;55104935 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ea6c1d2b9a4b98e5148eb7fd76c5847d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438873/ERR1438873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438873/ERR1438873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438873/PHESPV0083.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438873/PHESPV0083.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438873/ERR1438873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438873/ERR1438873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438873/PHESPV0083.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438873/PHESPV0083.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55922518;58302710 ERS1194252 ERX1509251 GENOMIC 183151196 2016-06-10 PHESPV0083 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438873/PHESPV0083.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438873/PHESPV0083.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438873 PHESPV0083 ERR1438888 PHESPV0098 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438888 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438888 ccac01dd1f3cbd43710a5084653ad14a;08572eb260a0d429e79a74daf97658d5 1313 128563349 8936e7c7fd458a5b1933fd40672da1ab;dbaa7ae1d4b41ed861f54bb0918f0827 SAMEA4023157 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438888/ERR1438888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438888/ERR1438888_2.fastq.gz 1514300 WGS PHESPV0098 RANDOM 85822400;89688592 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cb701ede0ee18b10f5094d2eef37c7c9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438888/ERR1438888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438888/ERR1438888_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438888/PHESPV0098.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438888/PHESPV0098.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438888/ERR1438888_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438888/ERR1438888_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438888/PHESPV0098.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438888/PHESPV0098.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90831671;94682440 ERS1194267 ERX1509266 GENOMIC 301101068 2016-06-10 PHESPV0098 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438888/PHESPV0098.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438888/PHESPV0098.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438888 PHESPV0098 ERR1439512 PHESPV0723 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439512 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439512 811c115847590e0f734a9cb658dc637c;9d876f7a99228b3183ee0ac7846e06f6 1313 165586079 4f86da94d6d554c3d71079473b7db6bf;b525c854d2fb0a22793714ba18c1f9f4 SAMEA4023781 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439512/ERR1439512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439512/ERR1439512_2.fastq.gz 1991571 WGS PHESPV0723 RANDOM 112757157;113745896 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 64e4f0ae377591b0012c3b77f87ba0b0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439512/ERR1439512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439512/ERR1439512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439512/PHESPV0723.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439512/PHESPV0723.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439512/ERR1439512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439512/ERR1439512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439512/PHESPV0723.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439512/PHESPV0723.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119210007;120200753 ERS1194891 ERX1509890 GENOMIC 388457043 2016-06-10 PHESPV0723 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439512/PHESPV0723.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439512/PHESPV0723.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439512 PHESPV0723 ERR1439738 PHESPV0949 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439738 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439738 c7e2c3d195b7788eca849f81874b60cc;80eab8df9f7113c7308130028700dde2 1313 175203663 8ed23d2c24849bdc5f923560f386c15f;71f52ddb3823b22e9ae956286dda7fdd SAMEA4024007 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439738/ERR1439738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439738/ERR1439738_2.fastq.gz 1954671 WGS PHESPV0949 RANDOM 126322923;128175433 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42a05b04bbe33eb1cc1b16824cec2a71 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439738/ERR1439738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439738/ERR1439738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439738/PHESPV0949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439738/PHESPV0949.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439738/ERR1439738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439738/ERR1439738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439738/PHESPV0949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439738/PHESPV0949.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121242608;123107967 ERS1195117 ERX1510116 GENOMIC 379975233 2016-06-10 PHESPV0949 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439738/PHESPV0949.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439738/PHESPV0949.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439738 PHESPV0949 ERR1439741 PHESPV0952 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439741 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439741 85557e4abe7f56570b20707b7eccc8c3;4700dfa8cb12794d16c2bc6fb8e0045c 1313 188850012 b9078ee536574f15543368847a3d87e9;f5a61111cc2a34b31af8ebbed3c1ef28 SAMEA4024010 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439741/ERR1439741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439741/ERR1439741_2.fastq.gz 2109032 WGS PHESPV0952 RANDOM 134271222;138952877 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b99cc98c93e661ed9bde0a855accd55 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439741/ERR1439741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439741/ERR1439741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439741/PHESPV0952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439741/PHESPV0952.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439741/ERR1439741_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439741/ERR1439741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439741/PHESPV0952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439741/PHESPV0952.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128835191;133518106 ERS1195120 ERX1510119 GENOMIC 404833566 2016-06-10 PHESPV0952 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439741/PHESPV0952.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439741/PHESPV0952.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439741 PHESPV0952 ERR1439743 PHESPV0954 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439743 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439743 51e773308e0749875b0ab8b9e5ced9fe;02d3345b3b9c8da0c71b3df464244f0f 1313 213782016 3a082f8087b58fb1e4f7e9006c9fc5ef;b1b14136e504a324c6a0ff5365faed70 SAMEA4024012 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439743/ERR1439743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439743/ERR1439743_2.fastq.gz 2380313 WGS PHESPV0954 RANDOM 152203331;156456867 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cab4bb8eaf2f59b9c6e87368bef529df ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439743/ERR1439743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439743/ERR1439743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439743/PHESPV0954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439743/PHESPV0954.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439743/ERR1439743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439743/ERR1439743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439743/PHESPV0954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439743/PHESPV0954.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 146228516;150489420 ERS1195122 ERX1510121 GENOMIC 457581893 2016-06-10 PHESPV0954 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439743/PHESPV0954.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439743/PHESPV0954.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439743 PHESPV0954 ERR1439521 PHESPV0732 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439521 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439521 0568eff11f3c6b23883d5a6f81e544c2;60e0898f5f7d261f889d82ff989c90a7 1313 132496112 789b9ff0a182cb7b1b100052f3fed710;6f12111cb53584f346aafecd73528c91 SAMEA4023790 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439521/ERR1439521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439521/ERR1439521_2.fastq.gz 1589133 WGS PHESPV0732 RANDOM 90074795;90771878 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e9b92c34a721deec99b09b6011a4c191 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439521/ERR1439521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439521/ERR1439521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439521/PHESPV0732.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439521/PHESPV0732.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439521/ERR1439521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439521/ERR1439521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439521/PHESPV0732.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439521/PHESPV0732.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95363111;96053166 ERS1194900 ERX1509899 GENOMIC 309917889 2016-06-10 PHESPV0732 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439521/PHESPV0732.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439521/PHESPV0732.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439521 PHESPV0732 ERR1439747 PHESPV0958 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439747 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439747 0751e5fab3c71ffeda65444dc6e8f78c;d73ed6e1be252f84328f74a5ef8baf8a 1313 194537463 b3d929ba1870f9b0139fceaa1d960db8;0219582b6e62135b2522ba948013c2be SAMEA4024016 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439747/ERR1439747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439747/ERR1439747_2.fastq.gz 2215745 WGS PHESPV0958 RANDOM 139990075;141875232 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50c8802cee452820e87682814657833c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439747/ERR1439747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439747/ERR1439747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439747/PHESPV0958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439747/PHESPV0958.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439747/ERR1439747_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439747/ERR1439747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439747/PHESPV0958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439747/PHESPV0958.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134271200;136170601 ERS1195126 ERX1510125 GENOMIC 419110720 2016-06-10 PHESPV0958 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439747/PHESPV0958.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439747/PHESPV0958.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439747 PHESPV0958 ERR1439751 PHESPV0962 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439751 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439751 9db1ecd92367a55cd629e5d8d6ca940f;58244a3620a28e043958ae8260f98c2b 1313 202178328 341e7b381ba599ad34223f013ffa8fae;16eb2404ea1dd662750484a2b7ee4948 SAMEA4024020 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439751/ERR1439751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439751/ERR1439751_2.fastq.gz 2244175 WGS PHESPV0962 RANDOM 143858238;148020086 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5d90738fa603544bd167d4e33c8a596a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439751/ERR1439751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439751/ERR1439751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439751/PHESPV0962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439751/PHESPV0962.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439751/ERR1439751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439751/ERR1439751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439751/PHESPV0962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439751/PHESPV0962.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138146576;142307559 ERS1195130 ERX1510129 GENOMIC 430821930 2016-06-10 PHESPV0962 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439751/PHESPV0962.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439751/PHESPV0962.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439751 PHESPV0962 ERR1439752 PHESPV0963 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439752 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439752 fde11b58fd72993de6b8a4bc2d106b86;d108a3638c2a0ae8a0a0fa262f8b655a 1313 207483352 365f7d3c4cd29c1c97ac81ea8796b19b;f1750d23d90a2a26d4939539d77b66a0 SAMEA4024021 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439752/ERR1439752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439752/ERR1439752_2.fastq.gz 2312234 WGS PHESPV0963 RANDOM 147612442;152041192 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2f45f7afbc3c0e7458abd1693bd667d6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439752/ERR1439752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439752/ERR1439752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439752/PHESPV0963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439752/PHESPV0963.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439752/ERR1439752_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439752/ERR1439752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439752/PHESPV0963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439752/PHESPV0963.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141777808;146213490 ERS1195131 ERX1510130 GENOMIC 443973212 2016-06-10 PHESPV0963 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439752/PHESPV0963.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439752/PHESPV0963.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439752 PHESPV0963 ERR1439757 PHESPV0968 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439757 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439757 1a24a55c4eb0220451ec4291e3a843d0;5305c9bcb6929f3a9f71a118707fef2c 1313 168332509 3eb5bc330ed74e25d2c5c42f2cb4085c;d1c5f22fdeb040450bd99eb6b08dae13 SAMEA4024026 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439757/ERR1439757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439757/ERR1439757_2.fastq.gz 1886360 WGS PHESPV0968 RANDOM 120525920;123497580 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ceda404a66f18322a32afbe3cedd5739 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439757/ERR1439757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439757/ERR1439757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439757/PHESPV0968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439757/PHESPV0968.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439757/ERR1439757_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439757/ERR1439757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439757/PHESPV0968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439757/PHESPV0968.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115541614;118522728 ERS1195136 ERX1510135 GENOMIC 361470181 2016-06-10 PHESPV0968 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439757/PHESPV0968.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439757/PHESPV0968.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439757 PHESPV0968 ERR1439754 PHESPV0965 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439754 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439754 787bc4bf15d6668be53cff4f285f1426;71d5f23705907e8046b92fa499d06d26 1313 172599000 83d25f8da071120c5fd48fcb95b65b67;193527ea01109af51b851d3629d71bd0 SAMEA4024023 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439754/ERR1439754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439754/ERR1439754_2.fastq.gz 1929334 WGS PHESPV0965 RANDOM 124955208;126382528 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 99852cbf779e850e487c3af4b4295269 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439754/ERR1439754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439754/ERR1439754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439754/PHESPV0965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439754/PHESPV0965.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439754/ERR1439754_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439754/ERR1439754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439754/PHESPV0965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439754/PHESPV0965.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119930712;121378606 ERS1195133 ERX1510132 GENOMIC 378087205 2016-06-10 PHESPV0965 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439754/PHESPV0965.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439754/PHESPV0965.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439754 PHESPV0965 ERR1439760 PHESPV0971 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439760 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439760 9587f6e359f6b0cd49fd714cb1d5016b;760851c28aa27d7131a97d5241b6effc 1313 166276497 92be3971418535dd02b09c1029dfdd39;f1e762cfab697586b9689107cdc9b3ae SAMEA4024029 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439760/ERR1439760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439760/ERR1439760_2.fastq.gz 1886928 WGS PHESPV0971 RANDOM 120606365;121253755 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b9dd5ee54c07eb0f4b765a66f48f9fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439760/ERR1439760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439760/ERR1439760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439760/PHESPV0971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439760/PHESPV0971.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439760/ERR1439760_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439760/ERR1439760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439760/PHESPV0971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439760/PHESPV0971.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115655625;116324508 ERS1195139 ERX1510138 GENOMIC 362196564 2016-06-10 PHESPV0971 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439760/PHESPV0971.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439760/PHESPV0971.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439760 PHESPV0971 ERR1439765 PHESPV0976 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439765 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439765 c748e6b32c54ccfde44c4893beba1329;cf79ea0a5a34081fca8419e8c7958a97 1313 201633200 2f95fd425893000bd709c1cf3300bd88;9e338cee766947bd010b9ca05feb13c6 SAMEA4024034 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439765/ERR1439765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439765/ERR1439765_2.fastq.gz 2261978 WGS PHESPV0976 RANDOM 144551879;147003912 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e7438c314dc246581fb9a71939c2c69a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439765/ERR1439765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439765/ERR1439765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439765/PHESPV0976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439765/PHESPV0976.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439765/ERR1439765_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439765/ERR1439765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439765/PHESPV0976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439765/PHESPV0976.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138716294;141175668 ERS1195144 ERX1510143 GENOMIC 432096940 2016-06-10 PHESPV0976 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439765/PHESPV0976.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439765/PHESPV0976.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439765 PHESPV0976 ERR1439792 PHESPV1003 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439792 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439792 fe7250504d2da228968438d56c43edca;1b492a4f2294343b89c6272d91f91657 1313 169401635 5c5b5feedd5ccf5a549cfebae601614f;3210768170efa326bd7d76d305e29bfb SAMEA4024061 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439792/ERR1439792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439792/ERR1439792_2.fastq.gz 1863487 WGS PHESPV1003 RANDOM 123033669;122514054 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 01ebb0eeb0115c3f59ca7b67e4aa6cf2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439792/ERR1439792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439792/ERR1439792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439792/PHESPV1003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439792/PHESPV1003.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439792/ERR1439792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439792/ERR1439792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439792/PHESPV1003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439792/PHESPV1003.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118135263;117635554 ERS1195171 ERX1510170 GENOMIC 362354243 2016-06-10 PHESPV1003 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439792/PHESPV1003.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439792/PHESPV1003.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439792 PHESPV1003 ERR1439793 PHESPV1004 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439793 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439793 4f81926197e4a465a77edb210fbb0e7e;5fba5e1b0b995e6c87fd45ad543693f8 1313 150542228 719d188ce3da912e53b2493a3b05de1d;1921c0a6143f6f01879d5ee3a69e13e6 SAMEA4024062 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439793/ERR1439793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439793/ERR1439793_2.fastq.gz 1667593 WGS PHESPV1004 RANDOM 109229458;109167679 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 81692848911e6768a3522371ad662d1b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439793/ERR1439793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439793/ERR1439793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439793/PHESPV1004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439793/PHESPV1004.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439793/ERR1439793_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439793/ERR1439793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439793/PHESPV1004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439793/PHESPV1004.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104859538;104816920 ERS1195172 ERX1510171 GENOMIC 322911379 2016-06-10 PHESPV1004 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439793/PHESPV1004.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439793/PHESPV1004.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439793 PHESPV1004 ERR1439795 PHESPV1006 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439795 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439795 87baf1bbc35d977e6c5751375c05bd08;1e7b15abadaaccbc58973fcaf86d5433 1313 195867035 cadc483a41e7364c199c6079f36cabf6;77446e9847cad2817db9095924f58224 SAMEA4024064 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439795/ERR1439795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439795/ERR1439795_2.fastq.gz 2169812 WGS PHESPV1006 RANDOM 141918091;141678725 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline effe99064a19e31b6a765cf169de3db5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439795/ERR1439795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439795/ERR1439795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439795/PHESPV1006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439795/PHESPV1006.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439795/ERR1439795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439795/ERR1439795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439795/PHESPV1006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439795/PHESPV1006.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136359318;136137287 ERS1195174 ERX1510173 GENOMIC 421194475 2016-06-10 PHESPV1006 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439795/PHESPV1006.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439795/PHESPV1006.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439795 PHESPV1006 ERR1439799 PHESPV1010 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439799 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439799 b394538036dfc890cffe8d0d22dc7a10;ce407f7c9c8b3a392f3816ae730b060a 1313 160129821 7d7bed9812c4040596a4a174e4263f11;e624e5a56dd8310cdfc47c32b70dee30 SAMEA4024068 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439799/ERR1439799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439799/ERR1439799_2.fastq.gz 1774680 WGS PHESPV1010 RANDOM 116101572;116233547 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 565c08e33be88e8aa41b5cd5d26cfc25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439799/ERR1439799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439799/ERR1439799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439799/PHESPV1010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439799/PHESPV1010.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439799/ERR1439799_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439799/ERR1439799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439799/PHESPV1010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439799/PHESPV1010.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111456886;111606483 ERS1195178 ERX1510177 GENOMIC 344025332 2016-06-10 PHESPV1010 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439799/PHESPV1010.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439799/PHESPV1010.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439799 PHESPV1010 ERR1439802 PHESPV1013 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439802 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439802 ba7bc7cb1556e97540dc812551c04eeb;0599c9fa0945f7f29afe2083ae8317d0 1313 185261842 08b4b83c8c84e7ddb96a758a2db19b30;e668f3f5b2fcb542d1ab2a2af71614de SAMEA4024071 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439802/ERR1439802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439802/ERR1439802_2.fastq.gz 2051084 WGS PHESPV1013 RANDOM 134013605;134490728 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b13fe0d6924229f37a62e3e2357d082 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439802/ERR1439802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439802/ERR1439802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439802/PHESPV1013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439802/PHESPV1013.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439802/ERR1439802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439802/ERR1439802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439802/PHESPV1013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439802/PHESPV1013.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128688288;129183284 ERS1195181 ERX1510180 GENOMIC 398389935 2016-06-10 PHESPV1013 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439802/PHESPV1013.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439802/PHESPV1013.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439802 PHESPV1013 ERR1439826 PHESPV1037 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439826 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439826 322b37bb38fbacd9921bad4d7559a92b;0164e8d25ed5f72d6ce3eec9d7370566 1313 175727599 5708c396c8b1ec2ea8c0f134a54a15b8;7de7efeed031a35f174023d595a60dcd SAMEA4024095 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439826/ERR1439826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439826/ERR1439826_2.fastq.gz 1982150 WGS PHESPV1037 RANDOM 127654511;127155282 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17a140986dc0713e5f39c515496e07f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439826/ERR1439826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439826/ERR1439826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439826/PHESPV1037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439826/PHESPV1037.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439826/ERR1439826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439826/ERR1439826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439826/PHESPV1037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439826/PHESPV1037.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122504664;122034052 ERS1195205 ERX1510204 GENOMIC 377047424 2016-06-10 PHESPV1037 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439826/PHESPV1037.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439826/PHESPV1037.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439826 PHESPV1037 ERR1439829 PHESPV1040 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439829 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439829 4e97c1d9feeeb7f9986718519dee1a1a;bcf05e25987efd0798543e1b94f38082 1313 136798211 3ea7d6b4645a79d32ba14a55a032b571;c30cb5c66ce1d1a18b4cf49800241c61 SAMEA4024098 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439829/ERR1439829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439829/ERR1439829_2.fastq.gz 1477306 WGS PHESPV1040 RANDOM 96631194;100550258 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 34c07091b00651d3ed8b535d9db70ea9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439829/ERR1439829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439829/ERR1439829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439829/PHESPV1040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439829/PHESPV1040.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439829/ERR1439829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439829/ERR1439829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439829/PHESPV1040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439829/PHESPV1040.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92836823;96738355 ERS1195208 ERX1510207 GENOMIC 286431851 2016-06-10 PHESPV1040 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439829/PHESPV1040.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439829/PHESPV1040.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439829 PHESPV1040 ERR1439830 PHESPV1041 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439830 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439830 0478fbeb63ca1bb3bbcb83864d89ff70;36ea2f870f5ec9a0e2af43a631aca850 1313 174183099 1c0e84d9d9ebdeef86360cff3f69fe5e;f01b58f1e232820ab44ddfc979aeadd9 SAMEA4024099 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439830/ERR1439830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439830/ERR1439830_2.fastq.gz 1893243 WGS PHESPV1041 RANDOM 122128973;128473784 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad7155203f359e639815435220ab467e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439830/ERR1439830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439830/ERR1439830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439830/PHESPV1041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439830/PHESPV1041.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439830/ERR1439830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439830/ERR1439830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439830/PHESPV1041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439830/PHESPV1041.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117166130;123493588 ERS1195209 ERX1510208 GENOMIC 362383891 2016-06-10 PHESPV1041 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439830/PHESPV1041.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439830/PHESPV1041.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439830 PHESPV1041 ERR1439846 PHESPV1057 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439846 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439846 69b595d5c5b77ae932a7fa464116d2b5;8a1ee3e3e644675a96045643a4a28067 1313 167478884 5aac4811f35bcfdf1716b887361ad401;56b04aae64f7deb86d65687641cd960b SAMEA4024115 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439846/ERR1439846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439846/ERR1439846_2.fastq.gz 1837681 WGS PHESPV1057 RANDOM 120436151;122048267 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 520acf27fab999c09e12b4d5dd0f52b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439846/ERR1439846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439846/ERR1439846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439846/PHESPV1057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439846/PHESPV1057.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439846/ERR1439846_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439846/ERR1439846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439846/PHESPV1057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439846/PHESPV1057.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115582155;117200901 ERS1195225 ERX1510224 GENOMIC 356810403 2016-06-10 PHESPV1057 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439846/PHESPV1057.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439846/PHESPV1057.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439846 PHESPV1057 ERR1439850 PHESPV1061 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439850 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439850 547dbf1f93bb02e0c63124396dcedf7f;e4ec6e263e1bded592455ba08b633168 1313 155085489 01eb05d42298b546470ba91134a04e6e;877331c82ee559e15357dee798210360 SAMEA4024119 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439850/ERR1439850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439850/ERR1439850_2.fastq.gz 1715737 WGS PHESPV1061 RANDOM 112087195;112763764 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 270336010ca38bef12fcb4401190f8b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439850/ERR1439850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439850/ERR1439850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439850/PHESPV1061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439850/PHESPV1061.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439850/ERR1439850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439850/ERR1439850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439850/PHESPV1061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439850/PHESPV1061.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107582536;108276768 ERS1195229 ERX1510228 GENOMIC 331937392 2016-06-10 PHESPV1061 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439850/PHESPV1061.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439850/PHESPV1061.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439850 PHESPV1061 ERR1439874 PHESPV1085 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439874 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439874 63350350572e70ffbdd273279fda5496;2f07cdab925076bac54b242a0210596a 1313 179653622 86f7bcd17bb3b4e8e0f7e6f60768e1be;2e2ac9b9b9cb3f554a26486b8c7d4d15 SAMEA4024143 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439874/ERR1439874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439874/ERR1439874_2.fastq.gz 1976688 WGS PHESPV1085 RANDOM 129149215;130740924 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9daced12d6cd835b3e9e7e985b735d13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439874/ERR1439874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439874/ERR1439874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439874/PHESPV1085.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439874/PHESPV1085.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439874/ERR1439874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439874/ERR1439874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439874/PHESPV1085.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439874/PHESPV1085.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123961763;125562065 ERS1195253 ERX1510252 GENOMIC 382524898 2016-06-10 PHESPV1085 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439874/PHESPV1085.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439874/PHESPV1085.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439874 PHESPV1085 ERR1439877 PHESPV1088 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439877 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439877 df5ee7ef34e533b29df4d88f6e88a04e;0501aba4711eb5c7174562813c479f1d 1313 126825981 252edd919e67b18918cf21227d17a893;de3e634957df994191f91c8decdd94a5 SAMEA4024146 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439877/ERR1439877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439877/ERR1439877_2.fastq.gz 1367268 WGS PHESPV1088 RANDOM 90375321;91507507 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f366a731a7460d0a608c1d3fb753f847 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439877/ERR1439877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439877/ERR1439877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439877/PHESPV1088.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439877/PHESPV1088.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439877/ERR1439877_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439877/ERR1439877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439877/PHESPV1088.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439877/PHESPV1088.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86867592;88026135 ERS1195256 ERX1510255 GENOMIC 257363872 2016-06-10 PHESPV1088 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439877/PHESPV1088.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439877/PHESPV1088.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439877 PHESPV1088 ERR1439871 PHESPV1082 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439871 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439871 6be52b8abf5be097a3cd69007d5239f2;673a2c50236884dfdf7808fef8a1cfc6 1313 151074806 c156fbf5e3320ed41c1c358c47f5bc53;83413b0b8ab022774a743852798a67a3 SAMEA4024140 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439871/ERR1439871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439871/ERR1439871_2.fastq.gz 1669917 WGS PHESPV1082 RANDOM 108953547;109804599 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c2ae7a46ed27a4b63cd5f43d47a8cd34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439871/ERR1439871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439871/ERR1439871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439871/PHESPV1082.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439871/PHESPV1082.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439871/ERR1439871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439871/ERR1439871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439871/PHESPV1082.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439871/PHESPV1082.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104522605;105384625 ERS1195250 ERX1510249 GENOMIC 321191969 2016-06-10 PHESPV1082 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439871/PHESPV1082.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439871/PHESPV1082.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439871 PHESPV1082 ERR1439961 PHESPV1172 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439961 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439961 d25871338d6822d2286921af9c7457ea;8f64147646b35e102c0162c0c03080d3 1313 139633411 1def4db52618c06db5f70b2d11a023f7;627e358e660c08d5369893264b7b187b SAMEA4024230 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439961/ERR1439961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439961/ERR1439961_2.fastq.gz 1604791 WGS PHESPV1172 RANDOM 92349548;96648915 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69b3f7083a0bf03649442ae6eb6ff45e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439961/ERR1439961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439961/ERR1439961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439961/PHESPV1172.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439961/PHESPV1172.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439961/ERR1439961_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439961/ERR1439961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439961/PHESPV1172.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439961/PHESPV1172.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97650763;101879055 ERS1195340 ERX1510339 GENOMIC 318565438 2016-06-10 PHESPV1172 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439961/PHESPV1172.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439961/PHESPV1172.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439961 PHESPV1172 ERR1440211 PHESPV1425 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440211 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440211 a1e2f8da63c137210eeb80a1793594bc;c6bc191d633fae0d8b77afe2139fa31e 1313 138583100 5efbdfb030bee4a1c45fcf39678f679f;2d61c58284b3184bdecd39838b13d98e SAMEA4024480 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440211/ERR1440211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440211/ERR1440211_2.fastq.gz 1487685 WGS PHESPV1425 RANDOM 98757397;99995454 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 60796c2c8dc79805b2890be6296e00ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440211/ERR1440211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440211/ERR1440211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440211/PHESPV1425.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440211/PHESPV1425.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440211/ERR1440211_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440211/ERR1440211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440211/PHESPV1425.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440211/PHESPV1425.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94897468;96156336 ERS1195590 ERX1510589 GENOMIC 281184761 2016-06-10 PHESPV1425 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440211/PHESPV1425.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440211/PHESPV1425.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440211 PHESPV1425 ERR1440229 PHESPV1443 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440229 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440229 1f6cba3c093b25b2b6e8de7f94d00c27;305462a8446f2ea49ab4b634ec3cd5fb 1313 153524934 085ecbe0e4a6ac91154a60bf4b918fd6;1b11921db6eea483f8737be05fb63f6f SAMEA4024498 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440229/ERR1440229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440229/ERR1440229_2.fastq.gz 1655807 WGS PHESPV1443 RANDOM 110166939;110483948 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a109032998b0efc00f09ec6e7e80f6ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440229/ERR1440229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440229/ERR1440229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440229/PHESPV1443.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440229/PHESPV1443.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440229/ERR1440229_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440229/ERR1440229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440229/PHESPV1443.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440229/PHESPV1443.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105832371;106180745 ERS1195608 ERX1510607 GENOMIC 314749610 2016-06-10 PHESPV1443 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440229/PHESPV1443.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440229/PHESPV1443.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440229 PHESPV1443 ERR1440251 PHESPV1466 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440251 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440251 bd3b941a9909955fb586d63e1d91430f;a2130fdcc2726160e165ef091d324b82 1313 136296728 5a565c91f3330595bec71243d7d2b789;773e06bdac7185a15c02ed5b47d1eae3 SAMEA4024520 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440251/ERR1440251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440251/ERR1440251_2.fastq.gz 1474314 WGS PHESPV1466 RANDOM 97903784;97946457 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 494a833c24ca4000ef27e2b6abecce52 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440251/ERR1440251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440251/ERR1440251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440251/PHESPV1466.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440251/PHESPV1466.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440251/ERR1440251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440251/ERR1440251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440251/PHESPV1466.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440251/PHESPV1466.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94101562;94167810 ERS1195630 ERX1510629 GENOMIC 278955368 2016-06-10 PHESPV1466 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440251/PHESPV1466.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440251/PHESPV1466.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440251 PHESPV1466 ERR1440254 PHESPV1469 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440254 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440254 17401cd2d5b5aba0ffc5d03ceaaa3dba;ea1d69a90b76afeb4d0625f60427865e 1313 129085520 2fe93b195b5dbb785ac2cda359a7d6cf;4f7e5c453723280db4723598a234bdff SAMEA4024523 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440254/ERR1440254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440254/ERR1440254_2.fastq.gz 1390008 WGS PHESPV1469 RANDOM 92763446;92796805 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1656b9a62ab2ed1248185fe85e6d5958 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440254/ERR1440254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440254/ERR1440254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440254/PHESPV1469.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440254/PHESPV1469.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440254/ERR1440254_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440254/ERR1440254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440254/PHESPV1469.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440254/PHESPV1469.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89225263;89283807 ERS1195633 ERX1510632 GENOMIC 265475558 2016-06-10 PHESPV1469 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440254/PHESPV1469.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440254/PHESPV1469.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440254 PHESPV1469 ERR1440281 PHESPV1496 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440281 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440281 b531ea4a1a28ac950964f057ee6bdf79;c57fc21658c0bda9644463a0dd275daf 1313 147104056 cc7eceed2ebae28f773bc14b385e3e28;2ca093599c7c9c967bf9dea288d68fa3 SAMEA4024550 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440281/ERR1440281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440281/ERR1440281_2.fastq.gz 1594385 WGS PHESPV1496 RANDOM 105849582;105569234 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 16f2a49c1fcbc104223ec720919b51b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440281/ERR1440281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440281/ERR1440281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440281/PHESPV1496.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440281/PHESPV1496.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440281/ERR1440281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440281/ERR1440281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440281/PHESPV1496.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440281/PHESPV1496.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101667191;101419192 ERS1195660 ERX1510659 GENOMIC 301722027 2016-06-10 PHESPV1496 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440281/PHESPV1496.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440281/PHESPV1496.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440281 PHESPV1496 ERR1440370 PHESPV1585 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440370 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440370 98f90ea6a4c1123c9295f387a0c1b85a;78376e57b17c1bf1ceb5a9b7bf76ad46 1313 186791449 1b507a209f3f3b5618451c562d79bc50;e7d223e8f4ec422a75f25732904d3307 SAMEA4024639 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440370/ERR1440370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440370/ERR1440370_2.fastq.gz 2202164 WGS PHESPV1585 RANDOM 135587334;139699277 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 61ff0c5e795e04ef79055971e5e1beb2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440370/ERR1440370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440370/ERR1440370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440370/PHESPV1585.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440370/PHESPV1585.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440370/ERR1440370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440370/ERR1440370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440370/PHESPV1585.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440370/PHESPV1585.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130034150;134120601 ERS1195749 ERX1510748 GENOMIC 435106869 2016-06-10 PHESPV1585 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440370/PHESPV1585.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440370/PHESPV1585.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440370 PHESPV1585 ERR1440377 PHESPV1592 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440377 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440377 53126b056fb4c2dce67551305cedb9e3;8e04afc5b2b3a38f76c7626f2cf0dab2 1313 150965880 21024308ccdc2a6643f62b5e24f0aa76;624f1f49d8fd3e1fc19c3650aeee3c0c SAMEA4024646 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440377/ERR1440377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440377/ERR1440377_2.fastq.gz 1763613 WGS PHESPV1592 RANDOM 108681230;113717638 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 07ea6dc90f8f67158a48c0a6135db943 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440377/ERR1440377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440377/ERR1440377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440377/PHESPV1592.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440377/PHESPV1592.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440377/ERR1440377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440377/ERR1440377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440377/PHESPV1592.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440377/PHESPV1592.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104174600;109159130 ERS1195756 ERX1510755 GENOMIC 347567745 2016-06-10 PHESPV1592 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440377/PHESPV1592.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440377/PHESPV1592.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440377 PHESPV1592 ERR1440484 PHESPV1699 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440484 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440484 46086f9e3e0efc06c43fa5f1c2ac6e4f;f15b9cb7cfc52586c7e1509809173f6a 1313 144651938 3421fcf83b76807b177273b2417cab63;e7e980f528184db41c77a598d1f334e2 SAMEA4024753 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440484/ERR1440484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440484/ERR1440484_2.fastq.gz 1607328 WGS PHESPV1699 RANDOM 104203598;104931958 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 905e189531b1a019182fd008ef7ca3dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440484/ERR1440484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440484/ERR1440484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440484/PHESPV1699.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440484/PHESPV1699.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440484/ERR1440484_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440484/ERR1440484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440484/PHESPV1699.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440484/PHESPV1699.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100020360;100763632 ERS1195863 ERX1510862 GENOMIC 310263590 2016-06-10 PHESPV1699 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440484/PHESPV1699.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440484/PHESPV1699.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440484 PHESPV1699 ERR1440580 PHESPV1795 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440580 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440580 01672f99cc714fbf6cf0d515f71e821c;79fefff8ec007dc0940bfdebb1904a0b 1313 127387379 df21b9b34b3fae0f9a65c121398b6ed1;9c68027ae260b396fc492b0f6078c1f3 SAMEA4024849 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440580/ERR1440580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440580/ERR1440580_2.fastq.gz 1498506 WGS PHESPV1795 RANDOM 93722436;94596809 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0403e541e3c555f67bca274b90004401 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440580/ERR1440580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440580/ERR1440580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440580/PHESPV1795.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440580/PHESPV1795.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440580/ERR1440580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440580/ERR1440580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440580/PHESPV1795.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440580/PHESPV1795.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90017381;90838484 ERS1195959 ERX1510958 GENOMIC 296394315 2016-06-10 PHESPV1795 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440580/PHESPV1795.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440580/PHESPV1795.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440580 PHESPV1795 ERR1438971 PHESPV0181 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438971 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438971 88dc0a05248eedc2c26612e7e626e579;7558d22330d10580e419223527ffefc9 1313 84663006 5e991a846b8d4141940f2f71186690ed;ca7b8f985aa9d6022545d8ab65643b95 SAMEA4023240 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438971/ERR1438971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438971/ERR1438971_2.fastq.gz 970909 WGS PHESPV0181 RANDOM 56543923;58580887 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3cad40c519d4d5575e0d7e578ada6785 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438971/ERR1438971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438971/ERR1438971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438971/PHESPV0181.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438971/PHESPV0181.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438971/ERR1438971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438971/ERR1438971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438971/PHESPV0181.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438971/PHESPV0181.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59916974;61934778 ERS1194350 ERX1509349 GENOMIC 192491735 2016-06-10 PHESPV0181 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438971/PHESPV0181.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438971/PHESPV0181.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438971 PHESPV0181 ERR1438987 PHESPV0198 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438987 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438987 05b76d612d5ddce50f97db1f0655d57e;3f2a24e87d337ffc73f57de5a3cf9a4f 1313 73433377 9b583f31d548d7b222c53c54d161a3ce;983206e5759f38f5ba895c1743445e02 SAMEA4023256 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438987/ERR1438987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438987/ERR1438987_2.fastq.gz 840490 WGS PHESPV0198 RANDOM 49273645;50433558 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d8000d24c4838035c90a82603383eeed ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438987/ERR1438987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438987/ERR1438987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438987/PHESPV0198.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438987/PHESPV0198.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438987/ERR1438987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438987/ERR1438987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438987/PHESPV0198.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438987/PHESPV0198.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52240504;53386135 ERS1194366 ERX1509365 GENOMIC 166668257 2016-06-10 PHESPV0198 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438987/PHESPV0198.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438987/PHESPV0198.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438987 PHESPV0198 ERR1440801 PHESPV2016 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440801 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440801 1be5a748683e43fee6f341fec4ec0bc6;d8f64ae0052129b6df63663ec496dd7d 1313 147333118 bb6c70df54260cbc51eb1af9f5688d6b;57af1f48ee56405fa0131ba232dad5ba SAMEA4025070 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440801/ERR1440801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440801/ERR1440801_2.fastq.gz 1602905 WGS PHESPV2016 RANDOM 106322487;106973902 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a57e68e62ba470d7ac76952f57238f9c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440801/ERR1440801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440801/ERR1440801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440801/PHESPV2016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440801/PHESPV2016.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440801/ERR1440801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440801/ERR1440801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440801/PHESPV2016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440801/PHESPV2016.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102163047;102824466 ERS1196180 ERX1511179 GENOMIC 312687871 2016-06-10 PHESPV2016 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440801/PHESPV2016.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440801/PHESPV2016.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440801 PHESPV2016 ERR1440686 PHESPV1901 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440686 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440686 9fb6368f52c54a30023dbed30ad912dd;37282dff61905f8f1e2e89ece1ad1d95 1313 125704235 4186ece0a03f72dd57c8b537bffcede2;48f8721aea1aad078ee9e17cb4d0a34b SAMEA4024955 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440686/ERR1440686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440686/ERR1440686_2.fastq.gz 1352400 WGS PHESPV1901 RANDOM 89784871;89791139 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6788ac1fee45e407e43e6ad5a01f7e5e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440686/ERR1440686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440686/ERR1440686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440686/PHESPV1901.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440686/PHESPV1901.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440686/ERR1440686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440686/ERR1440686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440686/PHESPV1901.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440686/PHESPV1901.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86247086;86255950 ERS1196065 ERX1511064 GENOMIC 263109420 2016-06-10 PHESPV1901 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440686/PHESPV1901.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440686/PHESPV1901.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440686 PHESPV1901 ERR1440805 PHESPV2020 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440805 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440805 e6c9e96a94e545f17f39ed8b338e00ff;a151c418cdc13c0c009427f59c2a2f43 1313 169299581 7b5e61af14b2068a5557a6494d734b24;900f63adc1d1cb585d460a1fbf85cff9 SAMEA4025074 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440805/ERR1440805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440805/ERR1440805_2.fastq.gz 1846579 WGS PHESPV2020 RANDOM 121761659;122971339 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 126404321c955b01ca13aed652d0c0e2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440805/ERR1440805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440805/ERR1440805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440805/PHESPV2020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440805/PHESPV2020.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440805/ERR1440805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440805/ERR1440805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440805/PHESPV2020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440805/PHESPV2020.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116918155;118135285 ERS1196184 ERX1511183 GENOMIC 358281322 2016-06-10 PHESPV2020 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440805/PHESPV2020.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440805/PHESPV2020.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440805 PHESPV2020 ERR1440822 PHESPV2037 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440822 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440822 b9faf6a3b618df02627538e5de2c787b;b55314f79690e1ee925cd2ddd1dc02d2 1313 167698650 3c90b3d0eddc404e4fa113c72605df1d;1782a2af7c30df60134590c68fa87b4a SAMEA4025091 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440822/ERR1440822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440822/ERR1440822_2.fastq.gz 1822377 WGS PHESPV2037 RANDOM 120414276;122311664 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 55f928957b03c9f6ddc7ff7452672079 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440822/ERR1440822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440822/ERR1440822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440822/PHESPV2037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440822/PHESPV2037.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440822/ERR1440822_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440822/ERR1440822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440822/PHESPV2037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440822/PHESPV2037.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115646124;117549396 ERS1196201 ERX1511200 GENOMIC 356498252 2016-06-10 PHESPV2037 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440822/PHESPV2037.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440822/PHESPV2037.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440822 PHESPV2037 ERR1440839 PHESPV2054 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440839 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440839 2fa8e312a0f3ad700558ed98cca92d7e;d0e9863459e6312909b30edfd202c51e 1313 131238085 37c67ac7e21ba26b04e604e60fdea91c;7969d8b9b9984390ae7dc98483bc0297 SAMEA4025108 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440839/ERR1440839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440839/ERR1440839_2.fastq.gz 1440854 WGS PHESPV2054 RANDOM 94915663;95156361 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c8a1187b57b9bdcfd7b7aff25df3edfe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440839/ERR1440839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440839/ERR1440839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440839/PHESPV2054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440839/PHESPV2054.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440839/ERR1440839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440839/ERR1440839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440839/PHESPV2054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440839/PHESPV2054.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91264456;91516410 ERS1196218 ERX1511217 GENOMIC 279961387 2016-06-10 PHESPV2054 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440839/PHESPV2054.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440839/PHESPV2054.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440839 PHESPV2054 ERR1440841 PHESPV2056 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440841 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440841 c079ea222bd61a38263a211082066657;5271bc130474e3d88bbb485dba619bc3 1313 139274988 e726fcd20fb6dc9eb0b0d4e24b849e04;d98be2060a324c33814cde01f0bb7fab SAMEA4025110 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440841/ERR1440841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440841/ERR1440841_2.fastq.gz 1508268 WGS PHESPV2056 RANDOM 99100473;101863307 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4d689b70ba3ad0ece7516c66ea10289a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440841/ERR1440841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440841/ERR1440841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440841/PHESPV2056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440841/PHESPV2056.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440841/ERR1440841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440841/ERR1440841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440841/PHESPV2056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440841/PHESPV2056.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95212801;97966060 ERS1196220 ERX1511219 GENOMIC 291813902 2016-06-10 PHESPV2056 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440841/PHESPV2056.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440841/PHESPV2056.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440841 PHESPV2056 ERR1438843 PHESPV0053 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438843 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438843 c1162fa14d0968a0794b59ee7e3fa14c;24a9b22ac88d85c6d3db0b925ec38a14 1313 102199859 82a7adb711e26e02a79e1d7da2ac79a4;d5142f9f0544708e05e188191f68f79a SAMEA4023112 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438843/ERR1438843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438843/ERR1438843_2.fastq.gz 1183519 WGS PHESPV0053 RANDOM 67560656;71768544 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f9335d665234ede8977faec498e81234 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438843/ERR1438843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438843/ERR1438843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438843/PHESPV0053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438843/PHESPV0053.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438843/ERR1438843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438843/ERR1438843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438843/PHESPV0053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438843/PHESPV0053.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71571759;75732876 ERS1194222 ERX1509221 GENOMIC 235079126 2016-06-10 PHESPV0053 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438843/PHESPV0053.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438843/PHESPV0053.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438843 PHESPV0053 ERR1438791 PHESPV0001 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438791 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438791 f14abe7098129256dd3ef6d2d29e2d91;f8f1bcbf729b38546639a76acac318b0 1313 85020310 3391306ed24f1070c8813854fdd4c354;eb89c8b57c4be9be071b5d3854d739b6 SAMEA4023060 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438791/ERR1438791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438791/ERR1438791_2.fastq.gz 973203 WGS PHESPV0001 RANDOM 56928559;58782342 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b1c48eac580c0cbac35cfc14690846b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438791/ERR1438791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438791/ERR1438791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438791/PHESPV0001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438791/PHESPV0001.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438791/ERR1438791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438791/ERR1438791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438791/PHESPV0001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438791/PHESPV0001.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60315746;62157066 ERS1194170 ERX1509169 GENOMIC 193019942 2016-06-10 PHESPV0001 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438791/PHESPV0001.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438791/PHESPV0001.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438791 PHESPV0001 ERR1439350 PHESPV0561 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439350 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439350 ea20e0045a91afb21efaa3070fc4f0ff;e51ee42e1ba128c87d6286715231361e 1313 200949667 db8ebe785cc655fadaca972edf2f4c47;3c4e8b5e62629cbdca6749c862fa008b SAMEA4023619 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439350/ERR1439350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439350/ERR1439350_2.fastq.gz 2499606 WGS PHESPV0561 RANDOM 135571062;141107742 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d2b76109d2928bfa52a64a004ae6d01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439350/ERR1439350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439350/ERR1439350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439350/PHESPV0561.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439350/PHESPV0561.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439350/ERR1439350_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439350/ERR1439350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439350/PHESPV0561.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439350/PHESPV0561.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 143281446;148777437 ERS1194729 ERX1509728 GENOMIC 489510202 2016-06-10 PHESPV0561 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439350/PHESPV0561.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439350/PHESPV0561.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439350 PHESPV0561 ERR1438931 PHESPV0141 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438931 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438931 a538124390a786e1eac9fea935fdb1af;0f606bae680d7f2b6495f2db71a277f7 1313 192076722 b5df4c667433ef19418465273987a483;9100e845489946b9e2b8dd90e5b1aa68 SAMEA4023200 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438931/ERR1438931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438931/ERR1438931_2.fastq.gz 2151372 WGS PHESPV0141 RANDOM 129070118;131274465 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a83b09284c3dbe1744f6dd274bc6084 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438931/ERR1438931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438931/ERR1438931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438931/PHESPV0141.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438931/PHESPV0141.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438931/ERR1438931_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438931/ERR1438931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438931/PHESPV0141.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438931/PHESPV0141.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135867570;138088346 ERS1194310 ERX1509309 GENOMIC 427095394 2016-06-10 PHESPV0141 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438931/PHESPV0141.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438931/PHESPV0141.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438931 PHESPV0141 ERR1438913 PHESPV0123 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438913 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438913 94496c4622a2dc832e57331021694fd5;bfa2fc19bcf3e5e761015f7b2c4e1925 1313 166050289 29865ff3cc717ba3683638f6379cf849;7aff09f950fbad56b8e46c00d8d2e196 SAMEA4023182 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438913/ERR1438913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438913/ERR1438913_2.fastq.gz 1827563 WGS PHESPV0123 RANDOM 110340589;113435144 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f36928c5277ea5aeb002957e06328b48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438913/ERR1438913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438913/ERR1438913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438913/PHESPV0123.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438913/PHESPV0123.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438913/ERR1438913_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438913/ERR1438913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438913/PHESPV0123.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438913/PHESPV0123.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116265714;119378188 ERS1194292 ERX1509291 GENOMIC 362364264 2016-06-10 PHESPV0123 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438913/PHESPV0123.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438913/PHESPV0123.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438913 PHESPV0123 ERR1438870 PHESPV0080 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438870 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438870 6be938e7f600a93867c35e367da374bf;a0fcf7a906e6d0837d1656847225a12e 1313 109211244 50930508d727180cd694fbc3ef65016a;a78ead58ad560a970439249351c03f0d SAMEA4023139 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438870/ERR1438870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438870/ERR1438870_2.fastq.gz 1262840 WGS PHESPV0080 RANDOM 72642494;76261768 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c5e98382a679594e91f9b5e17b843bed ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438870/ERR1438870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438870/ERR1438870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438870/PHESPV0080.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438870/PHESPV0080.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438870/ERR1438870_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438870/ERR1438870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438870/PHESPV0080.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438870/PHESPV0080.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76915747;80510486 ERS1194249 ERX1509248 GENOMIC 251034902 2016-06-10 PHESPV0080 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438870/PHESPV0080.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438870/PHESPV0080.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438870 PHESPV0080 ERR1438892 PHESPV0102 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438892 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438892 d91e1c574ad26b5e78f0e1fa3b8470fc;74caccbac152101d21281b7231c1d3fb 1313 102415107 e71130d4e91cb0322c1d706a73a9591f;3bdb77052317b37f233999d8801e8897 SAMEA4023161 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438892/ERR1438892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438892/ERR1438892_2.fastq.gz 1201763 WGS PHESPV0102 RANDOM 68440657;71474648 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be459ff10fb86381e07ec0af3f739004 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438892/ERR1438892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438892/ERR1438892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438892/PHESPV0102.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438892/PHESPV0102.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438892/ERR1438892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438892/ERR1438892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438892/PHESPV0102.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438892/PHESPV0102.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72523677;75536433 ERS1194271 ERX1509270 GENOMIC 238988136 2016-06-10 PHESPV0102 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438892/PHESPV0102.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438892/PHESPV0102.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438892 PHESPV0102 ERR1439486 PHESPV0697 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439486 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439486 59f60e5d89f94d3b43c31cda4f163917;2bbb05e6173e2207d624e99ec23f77b7 1313 111613908 b1af698d3dec19eb7bea8cd495d1b40c;c2947f8d54fb5eddf4808594cf423eb9 SAMEA4023755 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439486/ERR1439486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439486/ERR1439486_2.fastq.gz 1345936 WGS PHESPV0697 RANDOM 74890093;78294038 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a226b09a8ea0bdf0015c592389639c19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439486/ERR1439486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439486/ERR1439486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439486/PHESPV0697.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439486/PHESPV0697.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439486/ERR1439486_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439486/ERR1439486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439486/PHESPV0697.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439486/PHESPV0697.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79475671;82928341 ERS1194865 ERX1509864 GENOMIC 263232196 2016-06-10 PHESPV0697 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439486/PHESPV0697.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439486/PHESPV0697.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439486 PHESPV0697 ERR1439529 PHESPV0740 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439529 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439529 82840accda9658a06e6b72438f39c1b0;49687c189c6d4e6c20111f7ab3854b55 1313 142791028 17eef36b7b10ece37ebccc4ec1a6d178;31e68561858e4d24b487daf4ed4df259 SAMEA4023798 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439529/ERR1439529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439529/ERR1439529_2.fastq.gz 1727053 WGS PHESPV0740 RANDOM 97539689;98043442 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c156883f2bb4b58de2e20c654fbbddcf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439529/ERR1439529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439529/ERR1439529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439529/PHESPV0740.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439529/PHESPV0740.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439529/ERR1439529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439529/ERR1439529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439529/PHESPV0740.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439529/PHESPV0740.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103238710;103751567 ERS1194908 ERX1509907 GENOMIC 337498661 2016-06-10 PHESPV0740 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439529/PHESPV0740.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439529/PHESPV0740.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439529 PHESPV0740 ERR1439687 PHESPV0898 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439687 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439687 9257325328c6683927ce619fb216bc8c;5b38265f162492b587370fed583be671 1313 176433948 213f77999628a14e10a6c2452e94ca94;37d34d2bd6682c2d1fe132481b5674d1 SAMEA4023956 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439687/ERR1439687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439687/ERR1439687_2.fastq.gz 1942507 WGS PHESPV0898 RANDOM 127171923;129392972 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2033ba904ee3fad1a3ce5f2a81e4addf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439687/ERR1439687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439687/ERR1439687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439687/PHESPV0898.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439687/PHESPV0898.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439687/ERR1439687_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439687/ERR1439687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439687/PHESPV0898.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439687/PHESPV0898.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122133949;124355335 ERS1195066 ERX1510065 GENOMIC 381882321 2016-06-10 PHESPV0898 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439687/PHESPV0898.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439687/PHESPV0898.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439687 PHESPV0898 ERR1439502 PHESPV0713 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439502 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439502 c23a7fcde351eacec08e9fa46f6bd710;ba67c502aa5ff77ef64d5d806201bde4 1313 103936719 a94d71fff7bf5faf1f177e8b6eadf412;d9501f6de489f97132c03c9ac844621f SAMEA4023771 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439502/ERR1439502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439502/ERR1439502_2.fastq.gz 1251526 WGS PHESPV0713 RANDOM 69722184;72939536 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10ffe83c04091f50c1f8e234c8466034 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439502/ERR1439502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439502/ERR1439502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439502/PHESPV0713.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439502/PHESPV0713.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439502/ERR1439502_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439502/ERR1439502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439502/PHESPV0713.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439502/PHESPV0713.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74025620;77292854 ERS1194881 ERX1509880 GENOMIC 244726433 2016-06-10 PHESPV0713 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439502/PHESPV0713.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439502/PHESPV0713.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439502 PHESPV0713 ERR1439511 PHESPV0722 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439511 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439511 7ff7468a04724ec0e76f1c76721a2b27;4a3903027a2edf9d49cb7fc5a6af0beb 1313 129033519 96403f4a9142f7a4ce890b26530a4e67;6ca378a20d2bd7bd0f04406fdaf510ed SAMEA4023780 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439511/ERR1439511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439511/ERR1439511_2.fastq.gz 1557791 WGS PHESPV0722 RANDOM 86661291;90378653 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 323313c0c4c2f037c62bb2247a237b48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439511/ERR1439511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439511/ERR1439511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439511/PHESPV0722.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439511/PHESPV0722.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439511/ERR1439511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439511/ERR1439511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439511/PHESPV0722.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439511/PHESPV0722.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91879326;95655844 ERS1194890 ERX1509889 GENOMIC 304799988 2016-06-10 PHESPV0722 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439511/PHESPV0722.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439511/PHESPV0722.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439511 PHESPV0722 ERR1439778 PHESPV0989 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439778 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439778 96fa3e2612ed0ed3f4fdb79965995df2;e97f1de31ca0a6583d8b0569c1e9118e 1313 175533316 ecda219f06939922051ad8f4262498ea;7352e3f01b21621ef9de5e50678513e1 SAMEA4024047 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439778/ERR1439778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439778/ERR1439778_2.fastq.gz 1907571 WGS PHESPV0989 RANDOM 116125416;118711178 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 27fa0e3a14800e469a9d28ecec9007c2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439778/ERR1439778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439778/ERR1439778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439778/PHESPV0989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439778/PHESPV0989.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439778/ERR1439778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439778/ERR1439778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439778/PHESPV0989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439778/PHESPV0989.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122287068;124748712 ERS1195157 ERX1510156 GENOMIC 377327920 2016-06-10 PHESPV0989 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439778/PHESPV0989.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439778/PHESPV0989.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439778 PHESPV0989 ERR1439914 PHESPV1125 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439914 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439914 0b4dfdf644719290615d1a2acbf7704b;8ec18016530a97ec9cd1299054334bd8 1313 186250187 cb451b2f0b3acd56446d9440bd2e647e;e7f49b9a17becf830b6822d5a9a8c34e SAMEA4024183 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439914/ERR1439914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439914/ERR1439914_2.fastq.gz 2066433 WGS PHESPV1125 RANDOM 122967826;126784623 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d3e64575ebfda10701ee425ad0eaaa05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439914/ERR1439914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439914/ERR1439914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439914/PHESPV1125.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439914/PHESPV1125.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439914/ERR1439914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439914/ERR1439914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439914/PHESPV1125.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439914/PHESPV1125.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129481363;133281999 ERS1195293 ERX1510292 GENOMIC 409180686 2016-06-10 PHESPV1125 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439914/PHESPV1125.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439914/PHESPV1125.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439914 PHESPV1125 ERR1439917 PHESPV1128 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439917 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439917 376f62c0c727b1e396a9013a7861169f;cd214820e8c6695d588a9a84a0490702 1313 132738172 58d71a55e742f8739c4d44ecd9249a5d;eaf1ef79e9645925977e86f9718e6b62 SAMEA4024186 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439917/ERR1439917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439917/ERR1439917_2.fastq.gz 1587102 WGS PHESPV1128 RANDOM 89122768;92361638 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a4368eb79b0915cf54de4499761b9550 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439917/ERR1439917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439917/ERR1439917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439917/PHESPV1128.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439917/PHESPV1128.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439917/ERR1439917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439917/ERR1439917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439917/PHESPV1128.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439917/PHESPV1128.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94330622;97564592 ERS1195296 ERX1510295 GENOMIC 315549288 2016-06-10 PHESPV1128 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439917/PHESPV1128.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439917/PHESPV1128.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439917 PHESPV1128 ERR1439934 PHESPV1145 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439934 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439934 688653d4b84a3e67c52a1c26273965e8;552975376d5ca44f0b6a45e4b6a6e5c5 1313 135776175 971279cde647f67c8afb83177440324a;4d45a8804f1410987ca0cee7978851f9 SAMEA4024203 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439934/ERR1439934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439934/ERR1439934_2.fastq.gz 1605705 WGS PHESPV1145 RANDOM 90543270;94056689 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d97d8aa94caff4bf676164235ac4121 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439934/ERR1439934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439934/ERR1439934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439934/PHESPV1145.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439934/PHESPV1145.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439934/ERR1439934_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439934/ERR1439934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439934/PHESPV1145.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439934/PHESPV1145.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95812398;99318695 ERS1195313 ERX1510312 GENOMIC 319081436 2016-06-10 PHESPV1145 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439934/PHESPV1145.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439934/PHESPV1145.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439934 PHESPV1145 ERR1439905 PHESPV1116 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439905 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439905 19a120417d40b96824f85df52459d59a;ea0e21ac522a290352e3ad83ebf99364 1313 138738494 a1fb9bbea26cfc89ac21667da56d86f8;6941e30708a71ecc00cd20d2b32ffc1a SAMEA4024174 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439905/ERR1439905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439905/ERR1439905_2.fastq.gz 1538365 WGS PHESPV1116 RANDOM 93070161;94176352 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5bf447e6561bde7cd08b070502a0354b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439905/ERR1439905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439905/ERR1439905_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439905/PHESPV1116.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439905/PHESPV1116.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439905/ERR1439905_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439905/ERR1439905_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439905/PHESPV1116.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439905/PHESPV1116.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98166944;99292238 ERS1195284 ERX1510283 GENOMIC 305234064 2016-06-10 PHESPV1116 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439905/PHESPV1116.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439905/PHESPV1116.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439905 PHESPV1116 ERR1439939 PHESPV1150 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439939 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439939 9580fcfee97b176a2d1f7487984a4d08;b4651cf99c9cada5cf0c271e5d1c0c79 1313 122461861 273dabd2ffdd77b31d555b2f615d8bf0;0389645aec22671ad2187a95d6279437 SAMEA4024208 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439939/ERR1439939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439939/ERR1439939_2.fastq.gz 1461901 WGS PHESPV1150 RANDOM 82159047;84701730 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd097e6e0dd9443236c77abe13dd7cb8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439939/ERR1439939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439939/ERR1439939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439939/PHESPV1150.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439939/PHESPV1150.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439939/ERR1439939_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439939/ERR1439939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439939/PHESPV1150.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439939/PHESPV1150.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86992698;89507542 ERS1195318 ERX1510317 GENOMIC 290616815 2016-06-10 PHESPV1150 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439939/PHESPV1150.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439939/PHESPV1150.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439939 PHESPV1150 ERR1439948 PHESPV1159 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439948 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439948 97365e39b5cbbd9547c2b5c5d98b74ec;a530dd6110bda5de738a5fa93a81821d 1313 159735534 e1eddd7296a2aa69dc09a9cd63aafc51;12090586bfebdb5df2b936064bd82fa7 SAMEA4024217 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439948/ERR1439948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439948/ERR1439948_2.fastq.gz 1801337 WGS PHESPV1159 RANDOM 106795992;108778518 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ada218a07d37d6dd7fc3fde85b823b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439948/ERR1439948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439948/ERR1439948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439948/PHESPV1159.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439948/PHESPV1159.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439948/ERR1439948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439948/ERR1439948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439948/PHESPV1159.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439948/PHESPV1159.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112648556;114639996 ERS1195327 ERX1510326 GENOMIC 357931339 2016-06-10 PHESPV1159 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439948/PHESPV1159.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439948/PHESPV1159.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439948 PHESPV1159 ERR1439953 PHESPV1164 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439953 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439953 e35b0f80f480150665289929b381a818;faedd36ea0098632ce526a20ec691940 1313 137567910 4b65af9abab5272bc33e53a65c731037;4b162a37711685be13d7b2c5905d37ed SAMEA4024222 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439953/ERR1439953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439953/ERR1439953_2.fastq.gz 1547263 WGS PHESPV1164 RANDOM 92081518;93864608 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c67a58a5f1e156b5bfda59706b1fa3e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439953/ERR1439953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439953/ERR1439953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439953/PHESPV1164.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439953/PHESPV1164.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439953/ERR1439953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439953/ERR1439953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439953/PHESPV1164.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439953/PHESPV1164.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97206887;98976968 ERS1195332 ERX1510331 GENOMIC 307312295 2016-06-10 PHESPV1164 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439953/PHESPV1164.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439953/PHESPV1164.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439953 PHESPV1164 ERR1439962 PHESPV1173 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439962 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439962 6cf3a81814cad71fe785d3a882b423b9;a727e2a421c4845b0fb53e160b2ebdd6 1313 173688021 b6f86eeae51907de47e6abf2531a42c0;329df1816510cc28eff890631a9771c1 SAMEA4024231 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439962/ERR1439962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439962/ERR1439962_2.fastq.gz 1961614 WGS PHESPV1173 RANDOM 112535989;121147542 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d366e49ef9b17ea35bae9b49af398958 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439962/ERR1439962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439962/ERR1439962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439962/PHESPV1173.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439962/PHESPV1173.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439962/ERR1439962_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439962/ERR1439962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439962/PHESPV1173.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439962/PHESPV1173.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118798424;127295282 ERS1195341 ERX1510340 GENOMIC 388585220 2016-06-10 PHESPV1173 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439962/PHESPV1173.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439962/PHESPV1173.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439962 PHESPV1173 ERR1439987 PHESPV1198 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439987 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439987 d2d9b037918d54dd0b06bebd063ae3f4;056d6e55c213a7c021b8a3b90b916112 1313 109821589 65b9d44390f354eca86cd3373a1b1df3;90ba80ad14bc79142d4a044cfba20fad SAMEA4024256 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439987/ERR1439987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439987/ERR1439987_2.fastq.gz 1239531 WGS PHESPV1198 RANDOM 71359858;76485765 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c01c5f5dee4994b4b6b1f160eed44e77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439987/ERR1439987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439987/ERR1439987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439987/PHESPV1198.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439987/PHESPV1198.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439987/ERR1439987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439987/ERR1439987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439987/PHESPV1198.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439987/PHESPV1198.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75550474;80584627 ERS1195366 ERX1510365 GENOMIC 245606318 2016-06-10 PHESPV1198 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439987/PHESPV1198.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439987/PHESPV1198.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439987 PHESPV1198 ERR1439990 PHESPV1201 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439990 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439990 603dd5baa7df49c2eca497ed445da801;35788c2557bdb6cd66322060afbe6fda 1313 94546347 030bc89b89a1bd2adeebb67e72d93cde;c4f0f7cb73c6f1900c2734cb98385061 SAMEA4024259 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439990/ERR1439990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439990/ERR1439990_2.fastq.gz 1083788 WGS PHESPV1201 RANDOM 62855117;65384367 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aa058961447ea978b2971e433d11e214 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439990/ERR1439990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439990/ERR1439990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439990/PHESPV1201.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439990/PHESPV1201.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439990/ERR1439990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439990/ERR1439990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439990/PHESPV1201.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439990/PHESPV1201.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66594410;69065216 ERS1195369 ERX1510368 GENOMIC 215241990 2016-06-10 PHESPV1201 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439990/PHESPV1201.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439990/PHESPV1201.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439990 PHESPV1201 ERR1440040 PHESPV1251 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440040 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440040 8c7f85b1138d82842f885547edb78705;65e09cb4f57d521e28bb33cdf719aca9 1313 193597976 cbd9ba00b4483b3c956c6381173c2b29;dc182f7667cd62085309208e91a76b9c SAMEA4024309 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440040/ERR1440040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440040/ERR1440040_2.fastq.gz 2136746 WGS PHESPV1251 RANDOM 130202863;131949722 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d3cbaa156138664c25bdb25e59733118 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440040/ERR1440040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440040/ERR1440040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440040/PHESPV1251.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440040/PHESPV1251.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440040/ERR1440040_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440040/ERR1440040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440040/PHESPV1251.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440040/PHESPV1251.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136987774;138706729 ERS1195419 ERX1510418 GENOMIC 423516251 2016-06-10 PHESPV1251 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440040/PHESPV1251.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440040/PHESPV1251.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440040 PHESPV1251 ERR1440023 PHESPV1234 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440023 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440023 47277f67b25cb44b2d87d232b4bee26e;8a33cb52b07168d3ac7444f9d599699e 1313 170533033 df6788dac815a8434c496c74bee324dd;1036ea6a45f405d13fb71dbd31dc912f SAMEA4024292 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440023/ERR1440023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440023/ERR1440023_2.fastq.gz 1808820 WGS PHESPV1234 RANDOM 113663912;114743072 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 813dd0e1377fb764e784ca6b7d097326 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440023/ERR1440023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440023/ERR1440023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440023/PHESPV1234.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440023/PHESPV1234.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440023/ERR1440023_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440023/ERR1440023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440023/PHESPV1234.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440023/PHESPV1234.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119605266;120660841 ERS1195402 ERX1510401 GENOMIC 358079780 2016-06-10 PHESPV1234 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440023/PHESPV1234.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440023/PHESPV1234.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440023 PHESPV1234 ERR1440038 PHESPV1249 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440038 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440038 5dd677c0434ec5a8cfffdb2e662a1372;f5fb5f708bdd5ed73d7d461091ec10f7 1313 202140831 93e8763e5d772646035dcba1c5c4e087;b9a4f7025e132f66cbc21f1289871bba SAMEA4024307 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440038/ERR1440038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440038/ERR1440038_2.fastq.gz 2228657 WGS PHESPV1249 RANDOM 135595172;138044654 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dd7152c210c450cd141ce1d0a3b3782b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440038/ERR1440038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440038/ERR1440038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440038/PHESPV1249.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440038/PHESPV1249.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440038/ERR1440038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440038/ERR1440038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440038/PHESPV1249.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440038/PHESPV1249.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142649605;145064268 ERS1195417 ERX1510416 GENOMIC 441560028 2016-06-10 PHESPV1249 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440038/PHESPV1249.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440038/PHESPV1249.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440038 PHESPV1249 ERR1440073 PHESPV1284 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440073 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440073 a6b6510d3fa2dbfc9bfc0305e52be482;a9f425ee1a23576bfb69373a15f33d88 1313 154619787 453b0e2d09e55723772c49c28b1d3ee7;f00cb45e9c85b6a1304802c9f24fb5c3 SAMEA4024342 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440073/ERR1440073_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440073/ERR1440073_2.fastq.gz 1757492 WGS PHESPV1284 RANDOM 101711964;106374405 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7aaf7656a37564020cc713345d801523 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440073/ERR1440073_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440073/ERR1440073_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440073/PHESPV1284.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440073/PHESPV1284.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440073/ERR1440073_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440073/ERR1440073_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440073/PHESPV1284.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440073/PHESPV1284.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107331535;111937167 ERS1195452 ERX1510451 GENOMIC 348452938 2016-06-10 PHESPV1284 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440073/PHESPV1284.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440073/PHESPV1284.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440073 PHESPV1284 ERR1440107 PHESPV1318 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440107 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440107 9dde5814232082c1152638b407fe24af;7052a690f44987290fae689d43e004a3 1313 99476803 00b2a3f88c27deca138dc2d7d8965d14;6d22b0637c6e0808f8e2832e75bc87d6 SAMEA4024376 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440107/ERR1440107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440107/ERR1440107_2.fastq.gz 1117537 WGS PHESPV1318 RANDOM 65979621;68873221 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 06210a756d0440f7f77e41ee9662999f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440107/ERR1440107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440107/ERR1440107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440107/PHESPV1318.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440107/PHESPV1318.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440107/ERR1440107_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440107/ERR1440107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440107/PHESPV1318.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440107/PHESPV1318.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69867053;72667785 ERS1195486 ERX1510485 GENOMIC 221774653 2016-06-10 PHESPV1318 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440107/PHESPV1318.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440107/PHESPV1318.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440107 PHESPV1318 ERR1440101 PHESPV1312 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440101 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440101 bcf668884b0b9ea82400a06aea312abe;4ef0c97650f5fee26b4cf448ab75550a 1313 141857113 55028b4ca1edc9593b5997f5f92146ed;7f57f1d31963554fbb502077e7ded52f SAMEA4024370 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440101/ERR1440101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440101/ERR1440101_2.fastq.gz 1604405 WGS PHESPV1312 RANDOM 94541399;97565256 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5d1b440b0feb90ce7e43e24dcb9b0b97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440101/ERR1440101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440101/ERR1440101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440101/PHESPV1312.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440101/PHESPV1312.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440101/ERR1440101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440101/ERR1440101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440101/PHESPV1312.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440101/PHESPV1312.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99897168;102821297 ERS1195480 ERX1510479 GENOMIC 318522611 2016-06-10 PHESPV1312 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440101/PHESPV1312.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440101/PHESPV1312.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440101 PHESPV1312 ERR1440111 PHESPV1322 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440111 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440111 aa478f4a49c1084f53a671f9b29dda67;d97a8ec84336ba569494ccb59e636738 1313 117755913 3ac0625aacde33c125ebc2df62ee40f6;d3d06ed3bc662524f9ea2dd1a0ccc2fe SAMEA4024380 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440111/ERR1440111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440111/ERR1440111_2.fastq.gz 1341562 WGS PHESPV1322 RANDOM 78396051;81357923 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a1ea48021f470f0fd86b1a155c5af36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440111/ERR1440111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440111/ERR1440111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440111/PHESPV1322.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440111/PHESPV1322.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440111/ERR1440111_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440111/ERR1440111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440111/PHESPV1322.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440111/PHESPV1322.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82948238;85818261 ERS1195490 ERX1510489 GENOMIC 266434947 2016-06-10 PHESPV1322 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440111/PHESPV1322.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440111/PHESPV1322.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440111 PHESPV1322 ERR1440117 PHESPV1328 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440117 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440117 0eb191827e5a7a31a22f36bf1efe7394;6caa8ba6467b2d979f121cb25771d587 1313 121393165 2eb0fe45e25774f4537c8dbe43119c5b;68be65bdbd1f223c444196fa885b79a2 SAMEA4024386 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440117/ERR1440117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440117/ERR1440117_2.fastq.gz 1363908 WGS PHESPV1328 RANDOM 80924203;83552746 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ddaa77fdbd5fcce99fb427af70649b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440117/ERR1440117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440117/ERR1440117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440117/PHESPV1328.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440117/PHESPV1328.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440117/ERR1440117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440117/ERR1440117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440117/PHESPV1328.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440117/PHESPV1328.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85536645;88069546 ERS1195496 ERX1510495 GENOMIC 270833767 2016-06-10 PHESPV1328 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440117/PHESPV1328.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440117/PHESPV1328.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440117 PHESPV1328 ERR1440122 PHESPV1333 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440122 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440122 af4d780adf3c6a062c85875a17618e6c;348d39b3ef85298c1bfc0220fa52f419 1313 146401644 5db8cc675eac0bc68a7a1cc1bc76c29b;477fdb697c770234317fc5df00b55966 SAMEA4024391 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440122/ERR1440122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440122/ERR1440122_2.fastq.gz 1656881 WGS PHESPV1333 RANDOM 97372336;101208678 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3658ba8a255425d69fa98aac995dffff ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440122/ERR1440122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440122/ERR1440122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440122/PHESPV1333.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440122/PHESPV1333.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440122/ERR1440122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440122/ERR1440122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440122/PHESPV1333.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440122/PHESPV1333.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102853123;106583717 ERS1195501 ERX1510500 GENOMIC 328947414 2016-06-10 PHESPV1333 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440122/PHESPV1333.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440122/PHESPV1333.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440122 PHESPV1333 ERR1440144 PHESPV1357 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440144 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440144 cb448f92a5aa26a76ebcab923fa98fe7;b528a8e63d847131ab98f05326417cab 1313 98113033 d5171c2af8107a1733a40e5a6fcd1764;ad3e80b423b9d23bebf6f71d1b6399a9 SAMEA4024413 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440144/ERR1440144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440144/ERR1440144_2.fastq.gz 1102624 WGS PHESPV1357 RANDOM 64946109;67929489 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1b58983fce454c71ee057133c6b71190 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440144/ERR1440144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440144/ERR1440144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440144/PHESPV1357.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440144/PHESPV1357.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440144/ERR1440144_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440144/ERR1440144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440144/PHESPV1357.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440144/PHESPV1357.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68757438;71641141 ERS1195523 ERX1510522 GENOMIC 218763960 2016-06-10 PHESPV1357 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440144/PHESPV1357.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440144/PHESPV1357.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440144 PHESPV1357 ERR1440266 PHESPV1481 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440266 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440266 65c315e94db4c1f86fc045e72c13164a;da369c057c3e9bc5fa38f36146174e95 1313 168778191 6037dec14898d83381d71225bd4d74d3;4c9913515c5fad982d9510c8dbeae4b4 SAMEA4024535 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440266/ERR1440266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440266/ERR1440266_2.fastq.gz 2038686 WGS PHESPV1481 RANDOM 114659437;117276931 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7bf25d479477748d37109fe29a468032 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440266/ERR1440266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440266/ERR1440266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440266/PHESPV1481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440266/PHESPV1481.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440266/ERR1440266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440266/ERR1440266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440266/PHESPV1481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440266/PHESPV1481.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121117957;123737906 ERS1195645 ERX1510644 GENOMIC 405250012 2016-06-10 PHESPV1481 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440266/PHESPV1481.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440266/PHESPV1481.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440266 PHESPV1481 ERR1440155 PHESPV1368 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440155 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440155 1edd2091f00e1769cfa57481b97f6821;8c3ba9559c7a6dc04cfa906de33c3ade 1313 90569204 fdd32ffc5975aa8e0fb4a2da1120b19f;bdbb1c2b710dadbd0787921bf907a556 SAMEA4024424 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440155/ERR1440155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440155/ERR1440155_2.fastq.gz 1014449 WGS PHESPV1368 RANDOM 59950407;62719202 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 29df6a8e58ccdc033d5ec43bcf771418 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440155/ERR1440155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440155/ERR1440155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440155/PHESPV1368.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440155/PHESPV1368.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440155/ERR1440155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440155/ERR1440155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440155/PHESPV1368.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440155/PHESPV1368.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63482128;66150342 ERS1195534 ERX1510533 GENOMIC 201192329 2016-06-10 PHESPV1368 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440155/PHESPV1368.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440155/PHESPV1368.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440155 PHESPV1368 ERR1440237 PHESPV1451 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440237 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440237 4c8a696235d8383675ec0c481415dafc;2b96b6617be7c8f4800df8a42cb82313 1313 191770194 1d2c4d9c42ee8997805b8e093ebb3ba5;be33607a1df0e07b6c6c7f8aef025999 SAMEA4024506 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440237/ERR1440237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440237/ERR1440237_2.fastq.gz 2290205 WGS PHESPV1451 RANDOM 127591404;134920268 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 46bba64e64c47b590d70857daf43d26b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440237/ERR1440237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440237/ERR1440237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440237/PHESPV1451.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440237/PHESPV1451.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440237/ERR1440237_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440237/ERR1440237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440237/PHESPV1451.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440237/PHESPV1451.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134731671;141968793 ERS1195616 ERX1510615 GENOMIC 454616835 2016-06-10 PHESPV1451 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440237/PHESPV1451.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440237/PHESPV1451.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440237 PHESPV1451 ERR1440296 PHESPV1511 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440296 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440296 5d8fd79dd6f19957e0fc1aac9a6322fa;6c166615548f5949289a3b2e5d28b62e 1313 175680075 69cb713527634d77eba264a128478a4b;f90db3886ca3d130c0cdc844b5676887 SAMEA4024565 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440296/ERR1440296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440296/ERR1440296_2.fastq.gz 2128715 WGS PHESPV1511 RANDOM 119261047;122374179 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c0b278a5fe7fef26f1b1373346221232 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440296/ERR1440296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440296/ERR1440296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440296/PHESPV1511.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440296/PHESPV1511.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440296/ERR1440296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440296/ERR1440296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440296/PHESPV1511.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440296/PHESPV1511.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125956627;129066961 ERS1195675 ERX1510674 GENOMIC 423126688 2016-06-10 PHESPV1511 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440296/PHESPV1511.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440296/PHESPV1511.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440296 PHESPV1511 ERR1440530 PHESPV1745 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440530 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440530 1beeed4d4ad4a348926784147167eaf9;c80eff2c8d91a2855bf9b5505d008124 1313 175976996 1f4d2e1490e979d538791e1e1643a0f9;b2735c33ad9e7543acad142be4a8a8b3 SAMEA4024799 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440530/ERR1440530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440530/ERR1440530_2.fastq.gz 2090415 WGS PHESPV1745 RANDOM 129580336;130685031 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 07b4513196077b14aff18a8891f8442b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440530/ERR1440530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440530/ERR1440530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440530/PHESPV1745.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440530/PHESPV1745.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440530/ERR1440530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440530/ERR1440530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440530/PHESPV1745.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440530/PHESPV1745.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124317304;125366263 ERS1195909 ERX1510908 GENOMIC 413211063 2016-06-10 PHESPV1745 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440530/PHESPV1745.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440530/PHESPV1745.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440530 PHESPV1745 ERR1440531 PHESPV1746 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440531 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440531 dd3f6a73fd5e73dd88ba6262e08fddb4;884941c1f6238351fc075626794e8970 1313 126862490 f74d3357dc5f95969f56fac3b86968e5;85f57e6b4c59e7e7f692d1a668c3ebc5 SAMEA4024800 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440531/ERR1440531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440531/ERR1440531_2.fastq.gz 1489654 WGS PHESPV1746 RANDOM 92860342;94687336 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b5c57cba1868defd8855ca1b32dd900 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440531/ERR1440531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440531/ERR1440531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440531/PHESPV1746.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440531/PHESPV1746.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440531/ERR1440531_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440531/ERR1440531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440531/PHESPV1746.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440531/PHESPV1746.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89122517;90886486 ERS1195910 ERX1510909 GENOMIC 294699712 2016-06-10 PHESPV1746 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440531/PHESPV1746.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440531/PHESPV1746.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440531 PHESPV1746 ERR1440540 PHESPV1755 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440540 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440540 52edddf052fdf6b1b9b0e70b890bd0f6;0a0148b82b45b115681d4be77a26ab8b 1313 198296946 231b85ed9e82e847ab5a3ba26c36db5a;c52ac42033cefc97ababeb44a4b0700a SAMEA4024809 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440540/ERR1440540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440540/ERR1440540_2.fastq.gz 2331451 WGS PHESPV1755 RANDOM 145624674;146622824 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 37c0ac5dff857aebc48a4d2e8fb3d2bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440540/ERR1440540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440540/ERR1440540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440540/PHESPV1755.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440540/PHESPV1755.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440540/ERR1440540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440540/ERR1440540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440540/PHESPV1755.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440540/PHESPV1755.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 139830739;140781995 ERS1195919 ERX1510918 GENOMIC 461544262 2016-06-10 PHESPV1755 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440540/PHESPV1755.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440540/PHESPV1755.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440540 PHESPV1755 ERR1440551 PHESPV1766 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440551 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440551 da1aa98aa14505995244d4821705dda3;7013a4791bf3072d6f6023f0f27bcb66 1313 188760800 507a917a910b5aadab43a05a1728e807;f34cf9f13c27a479cc0dc583874a45ad SAMEA4024820 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440551/ERR1440551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440551/ERR1440551_2.fastq.gz 2221206 WGS PHESPV1766 RANDOM 138496961;139867728 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2f1998030ee498384c378eccc7cc1e7b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440551/ERR1440551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440551/ERR1440551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440551/PHESPV1766.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440551/PHESPV1766.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440551/ERR1440551_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440551/ERR1440551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440551/PHESPV1766.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440551/PHESPV1766.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132947699;134266044 ERS1195930 ERX1510929 GENOMIC 439308804 2016-06-10 PHESPV1766 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440551/PHESPV1766.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440551/PHESPV1766.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440551 PHESPV1766 ERR1440571 PHESPV1786 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440571 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440571 b563d5a05807a28afd79917eda153398;bfa3d529ea7d761b16a071f12fde0a75 1313 147930117 51a684721052ed36988b2f933f063dfc;f72ac27bceb92dd00f7a192c7741d9ad SAMEA4024840 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440571/ERR1440571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440571/ERR1440571_2.fastq.gz 1721160 WGS PHESPV1786 RANDOM 106628713;111261421 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 86d166bf3f3112644b4f97bcdb032a5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440571/ERR1440571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440571/ERR1440571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440571/PHESPV1786.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440571/PHESPV1786.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440571/ERR1440571_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440571/ERR1440571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440571/PHESPV1786.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440571/PHESPV1786.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102258425;106810898 ERS1195950 ERX1510949 GENOMIC 339613312 2016-06-10 PHESPV1786 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440571/PHESPV1786.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440571/PHESPV1786.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440571 PHESPV1786 ERR1440581 PHESPV1796 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440581 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440581 359973f3392d6444205a49f75ffa01ea;6ac7fada8bc2d74d94433521635c4993 1313 181161347 8fbf93b5b00a7ef32166ceee073b1279;fef641a608a7913272b06bba160e87dd SAMEA4024850 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440581/ERR1440581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440581/ERR1440581_2.fastq.gz 2115196 WGS PHESPV1796 RANDOM 132107227;134707680 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e47bc2b618846f46546c02e8ef696a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440581/ERR1440581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440581/ERR1440581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440581/PHESPV1796.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440581/PHESPV1796.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440581/ERR1440581_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440581/ERR1440581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440581/PHESPV1796.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440581/PHESPV1796.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126803905;129346200 ERS1195960 ERX1510959 GENOMIC 417731585 2016-06-10 PHESPV1796 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440581/PHESPV1796.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440581/PHESPV1796.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440581 PHESPV1796 ERR1440583 PHESPV1798 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440583 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440583 5812a46171fa594e8f1a243c96817015;a12d6f1180777c627e9879a0c3f13673 1313 170783660 3fba85355056ed9a2c55afd1b0e6b4d2;95c7ab7a5944b1a32ceb8cdcd8f27306 SAMEA4024852 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440583/ERR1440583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440583/ERR1440583_2.fastq.gz 1999896 WGS PHESPV1798 RANDOM 125161887;126901375 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d0daddeea2275a02a8672810ad0ee557 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440583/ERR1440583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440583/ERR1440583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440583/PHESPV1798.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440583/PHESPV1798.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440583/ERR1440583_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440583/ERR1440583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440583/PHESPV1798.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440583/PHESPV1798.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120091553;121781457 ERS1195962 ERX1510961 GENOMIC 396192935 2016-06-10 PHESPV1798 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440583/PHESPV1798.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440583/PHESPV1798.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440583 PHESPV1798 ERR1440587 PHESPV1802 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440587 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440587 eb82aa816c4f1e888d4e19af84611cfc;29f9e1941ed804e769aca2a65457b09a 1313 103326479 81417bd3e5f512353a3def19af2b81fa;d812ca3d675213c5faafcbacfc131bdb SAMEA4024856 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440587/ERR1440587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440587/ERR1440587_2.fastq.gz 1152114 WGS PHESPV1802 RANDOM 75186111;75053876 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 307817fef75c1bc321d4fed0c2210716 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440587/ERR1440587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440587/ERR1440587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440587/PHESPV1802.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440587/PHESPV1802.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440587/ERR1440587_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440587/ERR1440587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440587/PHESPV1802.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440587/PHESPV1802.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72296367;72188711 ERS1195966 ERX1510965 GENOMIC 226091783 2016-06-10 PHESPV1802 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440587/PHESPV1802.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440587/PHESPV1802.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440587 PHESPV1802 ERR1440588 PHESPV1803 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440588 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440588 1a7b9ecde636e600e9e5f07845dec3b0;a40e91730e2a38a14a070f81671a5fca 1313 123787271 8715172385cf3430f46710cd8e584ca3;492658bb2dee4e8863d0b03888918b7d SAMEA4024857 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440588/ERR1440588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440588/ERR1440588_2.fastq.gz 1362442 WGS PHESPV1803 RANDOM 88987090;90221671 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1aa9035d46c586b144643444575911dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440588/ERR1440588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440588/ERR1440588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440588/PHESPV1803.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440588/PHESPV1803.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440588/ERR1440588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440588/ERR1440588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440588/PHESPV1803.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440588/PHESPV1803.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85509506;86755112 ERS1195967 ERX1510966 GENOMIC 266598166 2016-06-10 PHESPV1803 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440588/PHESPV1803.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440588/PHESPV1803.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440588 PHESPV1803 ERR1438896 PHESPV0106 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438896 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438896 56c03a08ed5c5ecd5966f998fedb711e;1af671d102ec503096f8a78fe3b85c3f 1313 103235660 b4c561148484d9db8f04ff0c3110eefe;727151e9dc4ced014ccf3722efc61421 SAMEA4023165 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438896/ERR1438896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438896/ERR1438896_2.fastq.gz 1204228 WGS PHESPV0106 RANDOM 68885266;71963132 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fe83c76b7eabf6d805553c9eed804792 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438896/ERR1438896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438896/ERR1438896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438896/PHESPV0106.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438896/PHESPV0106.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438896/ERR1438896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438896/ERR1438896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438896/PHESPV0106.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438896/PHESPV0106.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72977415;76028312 ERS1194275 ERX1509274 GENOMIC 239442642 2016-06-10 PHESPV0106 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438896/PHESPV0106.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438896/PHESPV0106.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438896 PHESPV0106 ERR1438914 PHESPV0124 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438914 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438914 4789962916b19bfb2ed2156f73df387d;10edd413c4e747f35b76a2bb84079afc 1313 191074278 9a8de8762b2574045259fc70193207c5;809a8f6e0baa29d0c518ecc25400cd15 SAMEA4023183 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438914/ERR1438914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438914/ERR1438914_2.fastq.gz 2119429 WGS PHESPV0124 RANDOM 127710338;130222968 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 504a0542b633d3781812abf3f543c527 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438914/ERR1438914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438914/ERR1438914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438914/PHESPV0124.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438914/PHESPV0124.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438914/ERR1438914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438914/ERR1438914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438914/PHESPV0124.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438914/PHESPV0124.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134451453;136979094 ERS1194293 ERX1509292 GENOMIC 420524219 2016-06-10 PHESPV0124 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438914/PHESPV0124.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438914/PHESPV0124.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438914 PHESPV0124 ERR1439200 PHESPV0411 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439200 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439200 d074fcb8479b21cff5858aa4dc5624b9;9eff29ffd4b9131c9904f4452f0f0c9b 1313 111983071 3f532e537133b133f6f3bd784bf0e661;5eb30ac29e44f9c0637c64c09e33c84e SAMEA4023469 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439200/ERR1439200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439200/ERR1439200_2.fastq.gz 1230761 WGS PHESPV0411 RANDOM 81349239;80255928 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3fd3b8761f7cfa5be836aee573aa5ef2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439200/ERR1439200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439200/ERR1439200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439200/PHESPV0411.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439200/PHESPV0411.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439200/ERR1439200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439200/ERR1439200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439200/PHESPV0411.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439200/PHESPV0411.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78244658;77167979 ERS1194579 ERX1509578 GENOMIC 237688633 2016-06-10 PHESPV0411 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439200/PHESPV0411.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439200/PHESPV0411.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439200 PHESPV0411 ERR1439221 PHESPV0432 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439221 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439221 85e6ae9bfd18f765f8bd7901c71167d9;46bd4d3136346af784094f0f0983faba 1313 88316866 06552798e6792b82f6817eb61d51851f;82804b436d2969b704ac3b0005ea8808 SAMEA4023490 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439221/ERR1439221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439221/ERR1439221_2.fastq.gz 957943 WGS PHESPV0432 RANDOM 64167602;63544594 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ff8aa3800e7852a1f652645126b5855 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439221/ERR1439221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439221/ERR1439221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439221/PHESPV0432.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439221/PHESPV0432.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439221/ERR1439221_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439221/ERR1439221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439221/PHESPV0432.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439221/PHESPV0432.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61736393;61130464 ERS1194600 ERX1509599 GENOMIC 187406728 2016-06-10 PHESPV0432 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439221/PHESPV0432.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439221/PHESPV0432.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439221 PHESPV0432 ERR1439236 PHESPV0447 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439236 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439236 258a49f5a59dfc624760138bb560c8a9;3d8da6bf798898c2e08e69b75c5b210f 1313 72671853 f1b0b493fc53a56f5ec730cdf2135001;37506d149f92af8f911466579c6fd9f7 SAMEA4023505 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439236/ERR1439236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439236/ERR1439236_2.fastq.gz 795768 WGS PHESPV0447 RANDOM 52826335;52385738 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dccae8452cc35c0a0373603f5ed6aadf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439236/ERR1439236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439236/ERR1439236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439236/PHESPV0447.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439236/PHESPV0447.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439236/ERR1439236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439236/ERR1439236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439236/PHESPV0447.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439236/PHESPV0447.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50828035;50402790 ERS1194615 ERX1509614 GENOMIC 155150743 2016-06-10 PHESPV0447 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439236/PHESPV0447.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439236/PHESPV0447.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439236 PHESPV0447 ERR1439254 PHESPV0465 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439254 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439254 3b2cb8c5bc326428bb0e7fd1bc94b746;4a8405fd61109df280dd0fe26fcc1896 1313 99135724 7af16cef146f413c73f4d45ed7628691;4d03e5c2b69f5216c90dc5e29dbcaafd SAMEA4023523 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439254/ERR1439254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439254/ERR1439254_2.fastq.gz 1102950 WGS PHESPV0465 RANDOM 72162262;71089199 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a209752e742495f020b0c27b575b2eef ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439254/ERR1439254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439254/ERR1439254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439254/PHESPV0465.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439254/PHESPV0465.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439254/ERR1439254_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439254/ERR1439254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439254/PHESPV0465.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439254/PHESPV0465.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69342178;68285653 ERS1194633 ERX1509632 GENOMIC 210954428 2016-06-10 PHESPV0465 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439254/PHESPV0465.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439254/PHESPV0465.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439254 PHESPV0465 ERR1439422 PHESPV0633 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439422 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439422 f4947946171e6748fcbd63ed00d73129;5d4e137eb04685e50457d24817455c70 1313 141004990 dc035dfdf454c8334bf7489691afa9a5;7b678e0087850164fc5d503abe3e3483 SAMEA4023691 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439422/ERR1439422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439422/ERR1439422_2.fastq.gz 1550731 WGS PHESPV0633 RANDOM 100501247;103030169 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be66424d969a53fa1f16c0b115f08485 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439422/ERR1439422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439422/ERR1439422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439422/PHESPV0633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439422/PHESPV0633.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439422/ERR1439422_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439422/ERR1439422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439422/PHESPV0633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439422/PHESPV0633.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96472494;99004630 ERS1194801 ERX1509800 GENOMIC 300549036 2016-06-10 PHESPV0633 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439422/PHESPV0633.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439422/PHESPV0633.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439422 PHESPV0633 ERR1439360 PHESPV0571 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439360 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439360 01fb42766a9152716f5e23968328ba1c;db55ef753883ce991def4db148231165 1313 68697233 a179fd143bda3de599c49048264dfa85;3d0a806265029dd804bcbd1e71d196ec SAMEA4023629 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439360/ERR1439360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439360/ERR1439360_2.fastq.gz 759642 WGS PHESPV0571 RANDOM 49878099;49998539 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 738237fda0f53bdfcf88ba741702b15d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439360/ERR1439360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439360/ERR1439360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439360/PHESPV0571.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439360/PHESPV0571.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439360/ERR1439360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439360/ERR1439360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439360/PHESPV0571.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439360/PHESPV0571.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 47972566;48113225 ERS1194739 ERX1509738 GENOMIC 148945422 2016-06-10 PHESPV0571 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439360/PHESPV0571.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439360/PHESPV0571.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439360 PHESPV0571 ERR1439290 PHESPV0501 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439290 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439290 c7e542b54ac008705045af018c78d387;649d9917c003852ca17769c4e16e6669 1313 149785995 2412fc7fc3e5148eafff59e879f469ab;a715c36cfcac17f9a71cb2207f7f0777 SAMEA4023559 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439290/ERR1439290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439290/ERR1439290_2.fastq.gz 1646364 WGS PHESPV0501 RANDOM 108118177;107993048 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e6d85f966996e90d10899199489826dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439290/ERR1439290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439290/ERR1439290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439290/PHESPV0501.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439290/PHESPV0501.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439290/ERR1439290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439290/ERR1439290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439290/PHESPV0501.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439290/PHESPV0501.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103803313;103694003 ERS1194669 ERX1509668 GENOMIC 317712654 2016-06-10 PHESPV0501 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439290/PHESPV0501.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439290/PHESPV0501.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439290 PHESPV0501 ERR1439294 PHESPV0505 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439294 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439294 fdfee98fb8d47aa96aae3c1726552396;f4f5b87d8727a1d078d90fd7c833ffc4 1313 93852455 fe5c9608f41194fbf16d843923519e9e;f59f075a7d46454712578c7cd74501e6 SAMEA4023563 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439294/ERR1439294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439294/ERR1439294_2.fastq.gz 1017544 WGS PHESPV0505 RANDOM 66629688;68433907 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2dc02831dd8989b65f22f85c72649add ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439294/ERR1439294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439294/ERR1439294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439294/PHESPV0505.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439294/PHESPV0505.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439294/ERR1439294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439294/ERR1439294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439294/PHESPV0505.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439294/PHESPV0505.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64032374;65836416 ERS1194673 ERX1509672 GENOMIC 196102543 2016-06-10 PHESPV0505 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439294/PHESPV0505.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439294/PHESPV0505.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439294 PHESPV0505 ERR1439391 PHESPV0602 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439391 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439391 d5ba38ecc34383ee33f1916db62365de;dc8ff2211c19d0c91972eb0819e0feff 1313 69433228 44ce8d48747046c93bcf7cc45774756f;3839832744e9970b10b31eff3f61b397 SAMEA4023660 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439391/ERR1439391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439391/ERR1439391_2.fastq.gz 779162 WGS PHESPV0602 RANDOM 50627795;50331130 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 51ed5773366f10618bb9881b3251ec70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439391/ERR1439391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439391/ERR1439391_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439391/PHESPV0602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439391/PHESPV0602.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439391/ERR1439391_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439391/ERR1439391_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439391/PHESPV0602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439391/PHESPV0602.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48659457;48385462 ERS1194770 ERX1509769 GENOMIC 150979903 2016-06-10 PHESPV0602 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439391/PHESPV0602.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439391/PHESPV0602.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439391 PHESPV0602 ERR1439446 PHESPV0657 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439446 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439446 d75df02df7de8b8381c71d88430ddd0d;337f6dd5c6463f227bc04b8aeef4f6d7 1313 107863451 7ba9745d8e81ff8173503094765a0c8a;b98bf99b1f5e90d77d1b3094b3c43590 SAMEA4023715 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439446/ERR1439446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439446/ERR1439446_2.fastq.gz 1198614 WGS PHESPV0657 RANDOM 77824378;78468961 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b4d61def8e75b94f0aebc0e706f6676d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439446/ERR1439446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439446/ERR1439446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439446/PHESPV0657.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439446/PHESPV0657.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439446/ERR1439446_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439446/ERR1439446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439446/PHESPV0657.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439446/PHESPV0657.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74814017;75473969 ERS1194825 ERX1509824 GENOMIC 233591665 2016-06-10 PHESPV0657 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439446/PHESPV0657.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439446/PHESPV0657.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439446 PHESPV0657 ERR1439455 PHESPV0666 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439455 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439455 86d4c2acbbae233ce23775b60171a31b;6d87dc8b6227f04314551c7e73ea7a15 1313 78493493 b3d216b8c375209faa3b1e9a634e4190;8bfbdd0a26e36f93186cdf7c85603ca0 SAMEA4023724 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439455/ERR1439455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439455/ERR1439455_2.fastq.gz 864228 WGS PHESPV0666 RANDOM 56569976;57201960 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ca2277de788bfc5441a7655f2403603a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439455/ERR1439455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439455/ERR1439455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439455/PHESPV0666.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439455/PHESPV0666.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439455/ERR1439455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439455/ERR1439455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439455/PHESPV0666.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439455/PHESPV0666.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54378463;55021447 ERS1194834 ERX1509833 GENOMIC 169219123 2016-06-10 PHESPV0666 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439455/PHESPV0666.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439455/PHESPV0666.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439455 PHESPV0666 ERR1439589 PHESPV0800 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439589 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439589 93629270d8413ac4edfc113e6f6497c2;61a7303ddeb6e49206103ccf74600860 1313 93259816 32fe74cfd4c94c33569811129dfe69c8;e3b4e44d5ea24c85a0894d54ae4d9bdc SAMEA4023858 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439589/ERR1439589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439589/ERR1439589_2.fastq.gz 1022217 WGS PHESPV0800 RANDOM 64606854;65646616 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6aec09deded40ed540589c80ffbdd38f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439589/ERR1439589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439589/ERR1439589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439589/PHESPV0800.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439589/PHESPV0800.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439589/ERR1439589_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439589/ERR1439589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439589/PHESPV0800.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439589/PHESPV0800.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61985956;63070165 ERS1194968 ERX1509967 GENOMIC 186751996 2016-06-10 PHESPV0800 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439589/PHESPV0800.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439589/PHESPV0800.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439589 PHESPV0800 ERR1439541 PHESPV0752 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439541 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439541 a454a9d832c3f4e26dbf0ce4c5878958;dc547b73b33bcc5127e9d89f08b113fc 1313 130052658 15de54480027bcba7671d78ecd1f06ed;9eac06bbb8af77015f0bd4925619469b SAMEA4023810 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439541/ERR1439541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439541/ERR1439541_2.fastq.gz 1522792 WGS PHESPV0752 RANDOM 87633488;88659797 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 23fe8b0c2bc88bef47114c736e8240cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439541/ERR1439541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439541/ERR1439541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439541/PHESPV0752.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439541/PHESPV0752.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439541/ERR1439541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439541/ERR1439541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439541/PHESPV0752.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439541/PHESPV0752.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92667780;93701005 ERS1194920 ERX1509919 GENOMIC 302410795 2016-06-10 PHESPV0752 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439541/PHESPV0752.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439541/PHESPV0752.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439541 PHESPV0752 ERR1439567 PHESPV0778 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439567 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439567 69cb5b181f561e6d5c1be64f248afbfe;fe61c76dff878060ca80e52ccb339024 1313 75828925 3bef58657be89e2b154a008b5fc94c27;207614973b0290295b06fb3fc32fd329 SAMEA4023836 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439567/ERR1439567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439567/ERR1439567_2.fastq.gz 812288 WGS PHESPV0778 RANDOM 54495739;54805463 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0048582d44fbe7a070fa0e8e2059e5b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439567/ERR1439567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439567/ERR1439567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439567/PHESPV0778.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439567/PHESPV0778.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439567/ERR1439567_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439567/ERR1439567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439567/PHESPV0778.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439567/PHESPV0778.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52450286;52762577 ERS1194946 ERX1509945 GENOMIC 156222168 2016-06-10 PHESPV0778 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439567/PHESPV0778.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439567/PHESPV0778.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439567 PHESPV0778 ERR1439662 PHESPV0873 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439662 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439662 1119c156669fbac2e3a5682951c17119;12842fdee3ea0e671b4243eb415f20ac 1313 204955057 21f4306bff0077a91283111138665651;0a36ef945744cee47aef994ace0ac702 SAMEA4023931 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439662/ERR1439662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439662/ERR1439662_2.fastq.gz 2324972 WGS PHESPV0873 RANDOM 147535897;149199036 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 81be178f41f10fd86234e987763ed9cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439662/ERR1439662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439662/ERR1439662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439662/PHESPV0873.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439662/PHESPV0873.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439662/ERR1439662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439662/ERR1439662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439662/PHESPV0873.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439662/PHESPV0873.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141562716;143241886 ERS1195041 ERX1510040 GENOMIC 443429077 2016-06-10 PHESPV0873 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439662/PHESPV0873.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439662/PHESPV0873.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439662 PHESPV0873 ERR1439704 PHESPV0915 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439704 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439704 cc19f11097a624eaab15830fb5ac1e9f;481640e8b1ae40c1a5b9f0059ca18558 1313 179706783 374e57415960d70f1942b6aa1778b9d5;210c793187ed4a792a90ef2eaa1b6d3c SAMEA4023973 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439704/ERR1439704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439704/ERR1439704_2.fastq.gz 2036581 WGS PHESPV0915 RANDOM 130597370;130728645 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7772fec27d6fc4f4549cac27dd5a9800 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439704/ERR1439704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439704/ERR1439704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439704/PHESPV0915.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439704/PHESPV0915.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439704/ERR1439704_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439704/ERR1439704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439704/PHESPV0915.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439704/PHESPV0915.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125309207;125464735 ERS1195083 ERX1510082 GENOMIC 393176746 2016-06-10 PHESPV0915 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439704/PHESPV0915.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439704/PHESPV0915.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439704 PHESPV0915 ERR1439705 PHESPV0916 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439705 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439705 d523d6ceb8149d544fb690de850e2d73;bcac137a435ecb7c29a72d64351442c4 1313 178252361 1b0c8ece426ff918527c0f4de57bb7ae;9879263c45645ee49062120762292c25 SAMEA4023974 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439705/ERR1439705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439705/ERR1439705_2.fastq.gz 2024865 WGS PHESPV0916 RANDOM 129645562;129651492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69e234094c5a58072c93a48894df47cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439705/ERR1439705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439705/ERR1439705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439705/PHESPV0916.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439705/PHESPV0916.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439705/ERR1439705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439705/ERR1439705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439705/PHESPV0916.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439705/PHESPV0916.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124391114;124426719 ERS1195084 ERX1510083 GENOMIC 390517362 2016-06-10 PHESPV0916 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439705/PHESPV0916.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439705/PHESPV0916.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439705 PHESPV0916 ERR1439719 PHESPV0930 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439719 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439719 b37aaf47e1cabfda32394a7d3dcedacf;71bc3b3e0ca8ea9d22c681f57effde73 1313 157635856 02bf10a27f8c75b1a18bb85f0927f414;ad43074fa11cd9874a2c088f31705c62 SAMEA4023988 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439719/ERR1439719_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439719/ERR1439719_2.fastq.gz 1787906 WGS PHESPV0930 RANDOM 115072889;114684038 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e49779955ecc6c287f1eeca3d1dd3408 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439719/ERR1439719_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439719/ERR1439719_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439719/PHESPV0930.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439719/PHESPV0930.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439719/ERR1439719_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439719/ERR1439719_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439719/PHESPV0930.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439719/PHESPV0930.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110394805;110035723 ERS1195098 ERX1510097 GENOMIC 346029801 2016-06-10 PHESPV0930 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439719/PHESPV0930.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439719/PHESPV0930.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439719 PHESPV0930 ERR1439732 PHESPV0943 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439732 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439732 1f11a20724e92979cdc4499ed13fc952;7849d999ec61e7f61c8c259343ace280 1313 177727934 4bb4d4abc689dfc69200ea04aab5a19e;a6540f6003304f69d6be74e383eee911 SAMEA4024001 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439732/ERR1439732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439732/ERR1439732_2.fastq.gz 2041678 WGS PHESPV0943 RANDOM 129414014;129157515 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 52aabd8681f644ddd5df29ac4e66ae7c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439732/ERR1439732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439732/ERR1439732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439732/PHESPV0943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439732/PHESPV0943.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439732/ERR1439732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439732/ERR1439732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439732/PHESPV0943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439732/PHESPV0943.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124103913;123879485 ERS1195111 ERX1510110 GENOMIC 388426585 2016-06-10 PHESPV0943 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439732/PHESPV0943.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439732/PHESPV0943.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439732 PHESPV0943 ERR1439763 PHESPV0974 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439763 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439763 e551d16ea38559e5bc3542d8a43e38ff;52e9f2097b097caa0927afe9d8fa2ece 1313 132630799 06cc9885c58c7ecbef89f9f8ba6b08c2;fc743c5cf7df6f899483057d3479e2aa SAMEA4024032 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439763/ERR1439763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439763/ERR1439763_2.fastq.gz 1513005 WGS PHESPV0974 RANDOM 95982097;96631850 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 37eca785541ef7be007f7a232dfb8e9d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439763/ERR1439763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439763/ERR1439763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439763/PHESPV0974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439763/PHESPV0974.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439763/ERR1439763_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439763/ERR1439763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439763/PHESPV0974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439763/PHESPV0974.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92026012;92692595 ERS1195142 ERX1510141 GENOMIC 285285554 2016-06-10 PHESPV0974 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439763/PHESPV0974.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439763/PHESPV0974.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439763 PHESPV0974 ERR1439788 PHESPV0999 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439788 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439788 08a59ed2df95f35d14dbc590f6c596a6;97ea018822323133f58e43f5cc4ed795 1313 73397356 207dcd9ee20944efd92066741d315184;cd0588ac39a0afc0292e61b4ae1258d3 SAMEA4024057 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439788/ERR1439788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439788/ERR1439788_2.fastq.gz 811489 WGS PHESPV0999 RANDOM 53120831;53405183 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f4850dc4cb90f6cbdf1306098c9f3b87 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439788/ERR1439788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439788/ERR1439788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439788/PHESPV0999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439788/PHESPV0999.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439788/ERR1439788_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439788/ERR1439788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439788/PHESPV0999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439788/PHESPV0999.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51070946;51367519 ERS1195167 ERX1510166 GENOMIC 156902435 2016-06-10 PHESPV0999 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439788/PHESPV0999.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439788/PHESPV0999.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439788 PHESPV0999 ERR1439773 PHESPV0984 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439773 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439773 de06291796bd038b4a5e665413789e45;2c56ff03e8c12bb894f7f2a751339018 1313 132861110 98478b94a0ca0684fb80aeb54c990cab;3433a54c547c63b36bde8befcd3601cc SAMEA4024042 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439773/ERR1439773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439773/ERR1439773_2.fastq.gz 1463907 WGS PHESPV0984 RANDOM 94556700;97050936 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f94b8441ba76df1c917ae003626f75dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439773/ERR1439773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439773/ERR1439773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439773/PHESPV0984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439773/PHESPV0984.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439773/ERR1439773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439773/ERR1439773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439773/PHESPV0984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439773/PHESPV0984.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90792121;93287517 ERS1195152 ERX1510151 GENOMIC 278270077 2016-06-10 PHESPV0984 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439773/PHESPV0984.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439773/PHESPV0984.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439773 PHESPV0984 ERR1439810 PHESPV1021 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439810 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439810 405e16aaecd8e5e293d3ad1fd1a6ef88;40bdfdd25ba1d06516660f8d5d1a2872 1313 180105679 bd79abea0a150d04cfd6374d6d47187b;cf35a073b15b5ca338aa2b529cee79fe SAMEA4024079 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439810/ERR1439810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439810/ERR1439810_2.fastq.gz 1959909 WGS PHESPV1021 RANDOM 129880085;129669621 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9abff33b7567e1a04112b12c2a720f9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439810/ERR1439810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439810/ERR1439810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439810/PHESPV1021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439810/PHESPV1021.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439810/ERR1439810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439810/ERR1439810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439810/PHESPV1021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439810/PHESPV1021.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124776242;124589118 ERS1195189 ERX1510188 GENOMIC 375773203 2016-06-10 PHESPV1021 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439810/PHESPV1021.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439810/PHESPV1021.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439810 PHESPV1021 ERR1439811 PHESPV1022 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439811 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439811 f2b8e6642f34950dc32471b8d42d162a;94916d8c85187b556e70050b45d98e16 1313 167579896 336fba2b33e4cdb622425048a4d4261c;cac7bde10c8201db581c23add1aa8438 SAMEA4024080 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439811/ERR1439811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439811/ERR1439811_2.fastq.gz 1885583 WGS PHESPV1022 RANDOM 121859696;121284046 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 48830592304ce25a4dd72776947742e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439811/ERR1439811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439811/ERR1439811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439811/PHESPV1022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439811/PHESPV1022.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439811/ERR1439811_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439811/ERR1439811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439811/PHESPV1022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439811/PHESPV1022.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116921799;116375383 ERS1195190 ERX1510189 GENOMIC 360204835 2016-06-10 PHESPV1022 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439811/PHESPV1022.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439811/PHESPV1022.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439811 PHESPV1022 ERR1439814 PHESPV1025 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439814 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439814 a84d8de79930cd599be94c774f90f3eb;ab25c654967584b5a98cac2a87c06e77 1313 154376828 2b9738ce5b20cf763b8972ddbd25bf0c;d5d28a6bc03ac9b31b8eb667aab58f03 SAMEA4024083 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439814/ERR1439814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439814/ERR1439814_2.fastq.gz 1672200 WGS PHESPV1025 RANDOM 109990083;112805920 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f7f3265591849f51678fa93ba64d5b96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439814/ERR1439814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439814/ERR1439814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439814/PHESPV1025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439814/PHESPV1025.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439814/ERR1439814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439814/ERR1439814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439814/PHESPV1025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439814/PHESPV1025.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105635795;108451355 ERS1195193 ERX1510192 GENOMIC 324103992 2016-06-10 PHESPV1025 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439814/PHESPV1025.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439814/PHESPV1025.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439814 PHESPV1025 ERR1439815 PHESPV1026 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439815 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439815 82a7542656dba48badfd3432dc9606c8;54ed4b2c8d2de2be92eda0401d8e68f6 1313 94038019 c70d81b048eeb1dae69d224c416a47bc;92520a75810665b6d7c84f35eeb24c29 SAMEA4024084 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439815/ERR1439815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439815/ERR1439815_2.fastq.gz 1125839 WGS PHESPV1026 RANDOM 63821077;64704184 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 840b2af5a6301bbf9f9e3661f47986d4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439815/ERR1439815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439815/ERR1439815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439815/PHESPV1026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439815/PHESPV1026.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439815/ERR1439815_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439815/ERR1439815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439815/PHESPV1026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439815/PHESPV1026.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67705544;68594088 ERS1195194 ERX1510193 GENOMIC 223973046 2016-06-10 PHESPV1026 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439815/PHESPV1026.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439815/PHESPV1026.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439815 PHESPV1026 ERR1439816 PHESPV1027 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439816 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439816 65e2de1dc2092acf02ca3c5f1100c179;e7bd8c7c818071451baa32ff1edec322 1313 119880724 882f73cb31ff8aec9ae86613e52829b4;7cf1b5bd5e8b79f2753cf825283f35d1 SAMEA4024085 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439816/ERR1439816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439816/ERR1439816_2.fastq.gz 1412189 WGS PHESPV1027 RANDOM 79932576;83255094 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8841fb5bf2b756955c5b4cb6e17fcbf9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439816/ERR1439816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439816/ERR1439816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439816/PHESPV1027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439816/PHESPV1027.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439816/ERR1439816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439816/ERR1439816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439816/PHESPV1027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439816/PHESPV1027.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84648718;87966267 ERS1195195 ERX1510194 GENOMIC 280673479 2016-06-10 PHESPV1027 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439816/PHESPV1027.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439816/PHESPV1027.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439816 PHESPV1027 ERR1439836 PHESPV1047 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439836 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439836 65e53769e427e0557512f82ff32e1f40;79df6ed3fc357541e8ef92d3ad70b150 1313 185178816 c0608ccdd6cc450b9ede0000142b2ee8;a84f16ef099ebbe66a2a53a9b39cd3bb SAMEA4024105 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439836/ERR1439836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439836/ERR1439836_2.fastq.gz 2031369 WGS PHESPV1047 RANDOM 131398520;135297532 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 894ebfa582a30fe23c000f89a7ce2757 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439836/ERR1439836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439836/ERR1439836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439836/PHESPV1047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439836/PHESPV1047.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439836/ERR1439836_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439836/ERR1439836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439836/PHESPV1047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439836/PHESPV1047.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126114565;130013712 ERS1195215 ERX1510214 GENOMIC 387215006 2016-06-10 PHESPV1047 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439836/PHESPV1047.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439836/PHESPV1047.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439836 PHESPV1047 ERR1439832 PHESPV1043 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439832 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439832 d47e75b3446d17d6a62151277d6f22d0;3e38dbcc9158a81debf0f6c2a44022e5 1313 91532146 0c1d8ef449d1bda37f5da25bc70dbae3;9cc4cdcd1d657e9809839e1ad77ad25a SAMEA4024101 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439832/ERR1439832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439832/ERR1439832_2.fastq.gz 1079437 WGS PHESPV1043 RANDOM 61970970;62834932 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 67c1982b1ac0873f6069b848e63e5cb7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439832/ERR1439832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439832/ERR1439832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439832/PHESPV1043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439832/PHESPV1043.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439832/ERR1439832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439832/ERR1439832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439832/PHESPV1043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439832/PHESPV1043.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65715387;66577774 ERS1195211 ERX1510210 GENOMIC 214640157 2016-06-10 PHESPV1043 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439832/PHESPV1043.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439832/PHESPV1043.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439832 PHESPV1043 ERR1439837 PHESPV1048 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439837 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439837 4f0a00517ae00588cf2985096e708b57;e96b0ebb8880339bb6ec253a999faf07 1313 110759283 2241b7b03eaba4d91bfbdaaffdbc7857;0389b6d2b4843ceeb87972da56529d79 SAMEA4024106 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439837/ERR1439837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439837/ERR1439837_2.fastq.gz 1225762 WGS PHESPV1048 RANDOM 78640387;81049335 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c64afd31a5abf1a5f6739d3fb26592ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439837/ERR1439837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439837/ERR1439837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439837/PHESPV1048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439837/PHESPV1048.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439837/ERR1439837_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439837/ERR1439837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439837/PHESPV1048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439837/PHESPV1048.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75575268;77984801 ERS1195216 ERX1510215 GENOMIC 231814623 2016-06-10 PHESPV1048 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439837/PHESPV1048.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439837/PHESPV1048.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439837 PHESPV1048 ERR1439838 PHESPV1049 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439838 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439838 b6c378e4076e67bd594b30258474da1e;293553d820f632fc38bc2dc8d1f2bcb8 1313 119263259 171dd32b8c74f5bb161c377bb039d5bf;028b8db2bc5a5df750f12133bdce1bbb SAMEA4024107 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439838/ERR1439838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439838/ERR1439838_2.fastq.gz 1303224 WGS PHESPV1049 RANDOM 84393144;87548856 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c75e5e962288a18c8d881500f38212be ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439838/ERR1439838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439838/ERR1439838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439838/PHESPV1049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439838/PHESPV1049.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439838/ERR1439838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439838/ERR1439838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439838/PHESPV1049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439838/PHESPV1049.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81134712;84281174 ERS1195217 ERX1510216 GENOMIC 250724236 2016-06-10 PHESPV1049 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439838/PHESPV1049.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439838/PHESPV1049.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439838 PHESPV1049 ERR1439839 PHESPV1050 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439839 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439839 2fc9114da6332f8ed7911e682ebe5e09;f8bfda5d2bf10a2a03e47b62a5ccc40c 1313 136994700 6abe6ceeeb531bdca50959035e33216b;72c256b6abf90552bd55b1293e720048 SAMEA4024108 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439839/ERR1439839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439839/ERR1439839_2.fastq.gz 1510086 WGS PHESPV1050 RANDOM 97480202;100174224 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd4e98ee5af511655dbfbc060e860c64 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439839/ERR1439839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439839/ERR1439839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439839/PHESPV1050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439839/PHESPV1050.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439839/ERR1439839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439839/ERR1439839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439839/PHESPV1050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439839/PHESPV1050.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93589085;96281985 ERS1195218 ERX1510217 GENOMIC 287557651 2016-06-10 PHESPV1050 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439839/PHESPV1050.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439839/PHESPV1050.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439839 PHESPV1050 ERR1439840 PHESPV1051 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439840 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439840 3cdac6e5568b0ba9a1a385134fec38c9;19d942f867ec75546e999c6985092462 1313 246280690 bcef750b7f31f5094d30d7c49d50bb1b;86b624f3966ea84f8f6eaf049a0eadc2 SAMEA4024109 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439840/ERR1439840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439840/ERR1439840_2.fastq.gz 2809338 WGS PHESPV1051 RANDOM 179493452;178538015 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c62d877e39fb3f9f5027a66cab511cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439840/ERR1439840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439840/ERR1439840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439840/PHESPV1051.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439840/PHESPV1051.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439840/ERR1439840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439840/ERR1439840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439840/PHESPV1051.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439840/PHESPV1051.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 172217801;171282385 ERS1195219 ERX1510218 GENOMIC 542219910 2016-06-10 PHESPV1051 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439840/PHESPV1051.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439840/PHESPV1051.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439840 PHESPV1051 ERR1440194 PHESPV1408 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440194 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440194 07a672f37466462096f015be7f3b591c;4ceeca988d037e39c2ea52e408ffbaee 1313 131612524 2eccc036bf8ed400c91ddf6ab853a66f;1ef96b2f275ca6c8df751428ca605411 SAMEA4024463 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440194/ERR1440194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440194/ERR1440194_2.fastq.gz 1433967 WGS PHESPV1408 RANDOM 93904642;94955337 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 79f5c00df932e799e34f56e77b7a2b15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440194/ERR1440194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440194/ERR1440194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440194/PHESPV1408.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440194/PHESPV1408.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440194/ERR1440194_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440194/ERR1440194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440194/PHESPV1408.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440194/PHESPV1408.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90216932;91289026 ERS1195573 ERX1510572 GENOMIC 267670504 2016-06-10 PHESPV1408 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440194/PHESPV1408.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440194/PHESPV1408.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440194 PHESPV1408 ERR1440203 PHESPV1417 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440203 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440203 0fe3ffcaf6810ed8db8095e2d0098335;734ad6b8986aaf6f62a3263963dfaa9b 1313 122185451 c272edd72ada7fd042f909435ebbff6a;baddca7bb8791952867d0081a8884d10 SAMEA4024472 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440203/ERR1440203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440203/ERR1440203_2.fastq.gz 1321596 WGS PHESPV1417 RANDOM 87828213;87705480 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c836cd9429c9a14dedf698106c96fe98 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440203/ERR1440203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440203/ERR1440203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440203/PHESPV1417.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440203/PHESPV1417.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440203/ERR1440203_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440203/ERR1440203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440203/PHESPV1417.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440203/PHESPV1417.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84481275;84383160 ERS1195582 ERX1510581 GENOMIC 250637159 2016-06-10 PHESPV1417 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440203/PHESPV1417.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440203/PHESPV1417.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440203 PHESPV1417 ERR1440244 PHESPV1459 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440244 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440244 3bc076e084aad0cd1157f73a3b20bd1c;f99b83a28d7ab39828aa2d46e5e85a46 1313 144914098 84fcd046663e2e9fd4c839c3cc5a0697;19a3cfaf2bdee790981c242e0642ecbe SAMEA4024513 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440244/ERR1440244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440244/ERR1440244_2.fastq.gz 1580428 WGS PHESPV1459 RANDOM 104416366;103996089 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 25ba0f102996b414bc5f7b6f3f2d2f16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440244/ERR1440244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440244/ERR1440244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440244/PHESPV1459.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440244/PHESPV1459.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440244/ERR1440244_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440244/ERR1440244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440244/PHESPV1459.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440244/PHESPV1459.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100290968;99900409 ERS1195623 ERX1510622 GENOMIC 298001859 2016-06-10 PHESPV1459 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440244/PHESPV1459.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440244/PHESPV1459.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440244 PHESPV1459 ERR1440253 PHESPV1468 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440253 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440253 169d9cf8966940e885f89e62bc71393e;a424c8c96bc826713170bf30f15b3178 1313 157666226 6e5d5a66b7050f8339b7ec595e0d024f;128351e652d27c6e992c816cc5b4de3e SAMEA4024522 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440253/ERR1440253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440253/ERR1440253_2.fastq.gz 1892479 WGS PHESPV1468 RANDOM 106918858;109469710 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a9fdaf7c918566803c411e53b966b701 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440253/ERR1440253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440253/ERR1440253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440253/PHESPV1468.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440253/PHESPV1468.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440253/ERR1440253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440253/ERR1440253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440253/PHESPV1468.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440253/PHESPV1468.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112963317;115496819 ERS1195632 ERX1510631 GENOMIC 375990959 2016-06-10 PHESPV1468 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440253/PHESPV1468.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440253/PHESPV1468.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440253 PHESPV1468 ERR1440312 PHESPV1527 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440312 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440312 cdf90850bc9242440dbba0e871d44e0f;6061907c7d9411d3225fb5911ad63d8d 1313 93432970 b00c92ebb3953bd81fd16efb3e4d8082;db7ba2bbe369f6996aba1504f7350eb1 SAMEA4024581 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440312/ERR1440312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440312/ERR1440312_2.fastq.gz 1091709 WGS PHESPV1527 RANDOM 67620361;70224417 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f7ed5d7a2ee8898da6d5be3513130fa7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440312/ERR1440312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440312/ERR1440312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440312/PHESPV1527.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440312/PHESPV1527.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440312/ERR1440312_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440312/ERR1440312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440312/PHESPV1527.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440312/PHESPV1527.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64958133;67516011 ERS1195691 ERX1510690 GENOMIC 215560364 2016-06-10 PHESPV1527 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440312/PHESPV1527.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440312/PHESPV1527.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440312 PHESPV1527 ERR1440343 PHESPV1558 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440343 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440343 59f95c09d43bbc7a39e1848e3ea08bc0;0f521a54d1c802ce6f83193d1e1db0d7 1313 121027433 bd0b9b44b6d118f79b3db85d917f4a40;48eabebf01ebc20e7e5b625a6e73c107 SAMEA4024612 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440343/ERR1440343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440343/ERR1440343_2.fastq.gz 1427295 WGS PHESPV1558 RANDOM 87829229;90548114 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b57c81c678a4d4bca0b5eec483e07c52 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440343/ERR1440343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440343/ERR1440343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440343/PHESPV1558.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440343/PHESPV1558.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440343/ERR1440343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440343/ERR1440343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440343/PHESPV1558.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440343/PHESPV1558.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84304898;86978758 ERS1195722 ERX1510721 GENOMIC 280210547 2016-06-10 PHESPV1558 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440343/PHESPV1558.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440343/PHESPV1558.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440343 PHESPV1558 ERR1440469 PHESPV1684 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440469 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440469 0276b3c6d188cbc776e2e291917fc5e5;6e8fe49673712bcacdf5eb513242f4bf 1313 144168094 dfba1dda901662b82410ad98d935dab9;e1ae504f0241dfb6380e7004e8356083 SAMEA4024738 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440469/ERR1440469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440469/ERR1440469_2.fastq.gz 1573944 WGS PHESPV1684 RANDOM 103024930;106218144 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be82bdf9d9b6b23fe2ae4af97d1d4736 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440469/ERR1440469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440469/ERR1440469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440469/PHESPV1684.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440469/PHESPV1684.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440469/ERR1440469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440469/ERR1440469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440469/PHESPV1684.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440469/PHESPV1684.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98991526;102163769 ERS1195848 ERX1510847 GENOMIC 309350736 2016-06-10 PHESPV1684 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440469/PHESPV1684.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440469/PHESPV1684.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440469 PHESPV1684 ERR1440535 PHESPV1750 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440535 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440535 550705bb2d5cc3b1f4289ad5cf268dd5;5fbfbd9cfaa5dc9224223e4659c35732 1313 115800719 99145625b115accd24c2264bdd83214b;c71718da73d61309447ead40acbc2af0 SAMEA4024804 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440535/ERR1440535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440535/ERR1440535_2.fastq.gz 1287338 WGS PHESPV1750 RANDOM 83221616;83991216 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 248311882450e9c11f476975dabbaaeb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440535/ERR1440535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440535/ERR1440535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440535/PHESPV1750.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440535/PHESPV1750.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440535/ERR1440535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440535/ERR1440535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440535/PHESPV1750.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440535/PHESPV1750.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79998828;80776085 ERS1195914 ERX1510913 GENOMIC 248066209 2016-06-10 PHESPV1750 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440535/PHESPV1750.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440535/PHESPV1750.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440535 PHESPV1750 ERR1440649 PHESPV1864 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440649 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440649 573a12645d612e47338dc9442586c2ec;693544add050d050a5bbbf05761a26e5 1313 117252197 8eb0b772b39615aaa85957846f4cd90d;a66634316b11643040ef84c469713d00 SAMEA4024918 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440649/ERR1440649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440649/ERR1440649_2.fastq.gz 1315961 WGS PHESPV1864 RANDOM 83037146;87392150 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aca5ac9d79782027500a0c5fd27f202f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440649/ERR1440649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440649/ERR1440649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440649/PHESPV1864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440649/PHESPV1864.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440649/ERR1440649_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440649/ERR1440649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440649/PHESPV1864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440649/PHESPV1864.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79714156;84020383 ERS1196028 ERX1511027 GENOMIC 258447191 2016-06-10 PHESPV1864 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440649/PHESPV1864.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440649/PHESPV1864.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440649 PHESPV1864 ERR1439377 PHESPV0588 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439377 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439377 deadf73595b0243921f720cc788b2444;903d7f9cec9d09a65bbe0dc8f192f2d3 1313 86289191 f2410c45e23db97223ee46b35a1e25ff;0d79222421601808a2f171a9a3276cfd SAMEA4023646 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439377/ERR1439377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439377/ERR1439377_2.fastq.gz 953511 WGS PHESPV0588 RANDOM 62494233;62757102 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 991718c8a5791e62e8506e306c730d61 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439377/ERR1439377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439377/ERR1439377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439377/PHESPV0588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439377/PHESPV0588.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439377/ERR1439377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439377/ERR1439377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439377/PHESPV0588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439377/PHESPV0588.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60071450;60354410 ERS1194756 ERX1509755 GENOMIC 186458692 2016-06-10 PHESPV0588 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439377/PHESPV0588.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439377/PHESPV0588.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439377 PHESPV0588 ERR1439536 PHESPV0747 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439536 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439536 af498eadd8d45d80773d458cc92ecf1a;815858ca25b5f2060a821a4fd9fa1c12 1313 121225788 b283d1f1169574e2b547f01bbf1b8751;4b7f5f8e082e957fb99cb32473c9e522 SAMEA4023805 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439536/ERR1439536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439536/ERR1439536_2.fastq.gz 1450981 WGS PHESPV0747 RANDOM 82472025;83044842 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6fa9fee9cd9dfa1c416c432183643aa3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439536/ERR1439536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439536/ERR1439536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439536/PHESPV0747.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439536/PHESPV0747.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439536/ERR1439536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439536/ERR1439536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439536/PHESPV0747.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439536/PHESPV0747.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87352983;87922995 ERS1194915 ERX1509914 GENOMIC 282976055 2016-06-10 PHESPV0747 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439536/PHESPV0747.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439536/PHESPV0747.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439536 PHESPV0747 ERR1439561 PHESPV0772 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439561 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439561 a34e891c91fdd34cc5c12535facc566f;b6baec1fac99b94733b18535f8c1813e 1313 201000882 9cdafaedb21262aa2c20c2438c6d9e31;28f1760d70cb4955ad4cf0058ba50446 SAMEA4023830 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439561/ERR1439561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439561/ERR1439561_2.fastq.gz 2136521 WGS PHESPV0772 RANDOM 142999774;145451583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7cba7922c55be4f61ed221a69b9235db ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439561/ERR1439561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439561/ERR1439561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439561/PHESPV0772.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439561/PHESPV0772.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439561/ERR1439561_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439561/ERR1439561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439561/PHESPV0772.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439561/PHESPV0772.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137518200;139956303 ERS1194940 ERX1509939 GENOMIC 411125286 2016-06-10 PHESPV0772 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439561/PHESPV0772.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439561/PHESPV0772.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439561 PHESPV0772 ERR1439727 PHESPV0938 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439727 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439727 0dd38e74ee7fd4d01f09606255e46916;05bbffeb63d43127080c8097eb557eb7 1313 156392162 5fd3d6ba78d45e0146c1d64bf83e24aa;c1c172e8a6fab4621d2914c4422e9bb4 SAMEA4023996 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439727/ERR1439727_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439727/ERR1439727_2.fastq.gz 1737768 WGS PHESPV0938 RANDOM 101127522;103340555 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 56c2e1fde3412c38ce7acf40a9db8936 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439727/ERR1439727_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439727/ERR1439727_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439727/PHESPV0938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439727/PHESPV0938.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439727/ERR1439727_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439727/ERR1439727_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439727/PHESPV0938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439727/PHESPV0938.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106641995;108805172 ERS1195106 ERX1510105 GENOMIC 342433561 2016-06-10 PHESPV0938 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439727/PHESPV0938.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439727/PHESPV0938.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439727 PHESPV0938 ERR1439630 PHESPV0841 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439630 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439630 495b7cc12d34e8340c45ce3f726bcae8;890ba998586eb4d8fb7c2bedd842971c 1313 167061370 dd17004179f7400e848f2b84efef2ac8;86bf913c9cefcfaecbaf8169b961f576 SAMEA4023899 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439630/ERR1439630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439630/ERR1439630_2.fastq.gz 1792687 WGS PHESPV0841 RANDOM 120297851;120675608 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac68b500f07ebe343efbd4a5a8d7e5ae ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439630/ERR1439630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439630/ERR1439630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439630/PHESPV0841.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439630/PHESPV0841.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439630/ERR1439630_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439630/ERR1439630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439630/PHESPV0841.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439630/PHESPV0841.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115580899;115960550 ERS1195009 ERX1510008 GENOMIC 347782421 2016-06-10 PHESPV0841 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439630/PHESPV0841.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439630/PHESPV0841.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439630 PHESPV0841 ERR1439783 PHESPV0994 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439783 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439783 ec911522d4f9b0a2b3053f6306d4e992;04de00948c5e8515b78982316dfd4e58 1313 158841176 7edd390d60017c7bc519fbd25d4b58d8;5bd8521df41c534dea416d0799e28a39 SAMEA4024052 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439783/ERR1439783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439783/ERR1439783_2.fastq.gz 1764008 WGS PHESPV0994 RANDOM 104193909;107426757 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 84945334347e68a2b5ca55933f84e9ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439783/ERR1439783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439783/ERR1439783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439783/PHESPV0994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439783/PHESPV0994.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439783/ERR1439783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439783/ERR1439783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439783/PHESPV0994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439783/PHESPV0994.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109857638;113011668 ERS1195162 ERX1510161 GENOMIC 348392826 2016-06-10 PHESPV0994 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439783/PHESPV0994.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439783/PHESPV0994.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439783 PHESPV0994 ERR1439804 PHESPV1015 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439804 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439804 1f105102cc036199a3d80525e0e72829;5e7e8a20edbb29052897d3bf4ca41174 1313 57693906 02603676c4e0573fc5a020d1042af715;492c3e0d78ece391383c8ad35db09126 SAMEA4024073 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439804/ERR1439804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439804/ERR1439804_2.fastq.gz 651998 WGS PHESPV1015 RANDOM 38902587;39242070 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ec4fc841032faa4fa848d69e2ea92385 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439804/ERR1439804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439804/ERR1439804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439804/PHESPV1015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439804/PHESPV1015.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439804/ERR1439804_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439804/ERR1439804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439804/PHESPV1015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439804/PHESPV1015.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 41272463;41613411 ERS1195183 ERX1510182 GENOMIC 129253884 2016-06-10 PHESPV1015 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439804/PHESPV1015.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439804/PHESPV1015.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439804 PHESPV1015 ERR1439835 PHESPV1046 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439835 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439835 f59f916535c36af195b0fc9fffc114fe;2da752944f51adfd554b9d94a1a3c388 1313 144448835 1848b7c59a822b8654a75cd35d5add30;9817e60601e724a8738a1a344de4329c SAMEA4024104 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439835/ERR1439835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439835/ERR1439835_2.fastq.gz 1581647 WGS PHESPV1046 RANDOM 96703764;98110261 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b446b4a50ba57e69ddf2762705434785 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439835/ERR1439835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439835/ERR1439835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439835/PHESPV1046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439835/PHESPV1046.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439835/ERR1439835_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439835/ERR1439835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439835/PHESPV1046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439835/PHESPV1046.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101951404;103342911 ERS1195214 ERX1510213 GENOMIC 312990628 2016-06-10 PHESPV1046 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439835/PHESPV1046.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439835/PHESPV1046.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439835 PHESPV1046 ERR1440604 PHESPV1819 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440604 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440604 7e346af0873a398c3a8746ebfea9e2e8;62f5065fc86be4a6e3115548fafc157d 1313 117597918 0a75268f1bc397d9feeaf9e038eaa577;ef4644d521f82fd629642f8a97341f74 SAMEA4024873 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440604/ERR1440604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440604/ERR1440604_2.fastq.gz 1381890 WGS PHESPV1819 RANDOM 84620094;87159084 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 91ff8f9931c7918aae49a0d60bf8d424 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440604/ERR1440604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440604/ERR1440604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440604/PHESPV1819.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440604/PHESPV1819.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440604/ERR1440604_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440604/ERR1440604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440604/PHESPV1819.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440604/PHESPV1819.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81087799;83592035 ERS1195983 ERX1510982 GENOMIC 264739336 2016-06-10 PHESPV1819 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440604/PHESPV1819.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440604/PHESPV1819.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440604 PHESPV1819 ERR1439878 PHESPV1089 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439878 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439878 0064b64a5c1eab2d92701518ddf288fb;bd9ce7a888d7dae08b0d3a3a432d79b4 1313 80999874 972c5a02ecdd4a989744755830da9170;ccbc4b6c32e5d746c17dd15704807910 SAMEA4024147 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439878/ERR1439878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439878/ERR1439878_2.fastq.gz 878347 WGS PHESPV1089 RANDOM 54016285;54979258 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0220fc0f132b88a71c2f9647a0035bb3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439878/ERR1439878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439878/ERR1439878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439878/PHESPV1089.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439878/PHESPV1089.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439878/ERR1439878_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439878/ERR1439878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439878/PHESPV1089.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439878/PHESPV1089.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57097358;58048990 ERS1195257 ERX1510256 GENOMIC 173611178 2016-06-10 PHESPV1089 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439878/PHESPV1089.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439878/PHESPV1089.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439878 PHESPV1089 ERR1440627 PHESPV1842 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440627 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440627 8f6c6ce0653d1c965e985af3fa3c6a53;b8427cf01f04453fc0d17d7a3c6b904a 1313 44528294 37de5b74a2e161459bb76f5bc5cbddf2;64a8550fe63226b0bae7b123a4f6a88f SAMEA4024896 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440627/ERR1440627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440627/ERR1440627_2.fastq.gz 499618 WGS PHESPV1842 RANDOM 31437827;33381902 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 14d7743c92e7c35751f681b8b3b32f99 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440627/ERR1440627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440627/ERR1440627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440627/PHESPV1842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440627/PHESPV1842.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440627/ERR1440627_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440627/ERR1440627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440627/PHESPV1842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440627/PHESPV1842.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 30220144;32131397 ERS1196006 ERX1511005 GENOMIC 97315384 2016-06-10 PHESPV1842 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440627/PHESPV1842.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440627/PHESPV1842.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440627 PHESPV1842 ERR1440678 PHESPV1893 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440678 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440678 7652a40f59c930b33f4600c76a132fa5;62249eb36c04fdf1cd483cb2df1d0739 1313 131660825 74b6c2ddebf6db89a0528fa35cd8bdf1;8a9a284f2ddecf63d7b4d7090df06aaf SAMEA4024947 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440678/ERR1440678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440678/ERR1440678_2.fastq.gz 1431952 WGS PHESPV1893 RANDOM 93975600;94160360 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 34baf5b2eccabb13f0e0a3e65cfa08ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440678/ERR1440678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440678/ERR1440678_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440678/PHESPV1893.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440678/PHESPV1893.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440678/ERR1440678_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440678/ERR1440678_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440678/PHESPV1893.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440678/PHESPV1893.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90194519;90381531 ERS1196057 ERX1511056 GENOMIC 277390593 2016-06-10 PHESPV1893 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440678/PHESPV1893.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440678/PHESPV1893.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440678 PHESPV1893 ERR1440682 PHESPV1897 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440682 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440682 6e5c97a5316d2d1f6ce70301e576fb85;3f5868fdcec4efc1a25d4eb686b2e4b7 1313 136472594 cfd68025738c8cf5acc84f38ab1b6974;6b2eaf307db6173a42f0142b726548d7 SAMEA4024951 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440682/ERR1440682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440682/ERR1440682_2.fastq.gz 1477815 WGS PHESPV1897 RANDOM 97237628;97490990 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bc18997dc520b12c02043182a720e515 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440682/ERR1440682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440682/ERR1440682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440682/PHESPV1897.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440682/PHESPV1897.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440682/ERR1440682_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440682/ERR1440682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440682/PHESPV1897.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440682/PHESPV1897.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93361229;93609545 ERS1196061 ERX1511060 GENOMIC 285621391 2016-06-10 PHESPV1897 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440682/PHESPV1897.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440682/PHESPV1897.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440682 PHESPV1897 ERR1440695 PHESPV1910 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440695 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440695 c36ac09a517518be383415b3ce748b59;7fa4ce3ad437ccafb8d8e4e77c338619 1313 121915225 abae7a8fbd70ae00fb11e8b8ef97195c;2a26e14e105ee23b93edff23d1d6f885 SAMEA4024964 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440695/ERR1440695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440695/ERR1440695_2.fastq.gz 1306309 WGS PHESPV1910 RANDOM 86481604;87094380 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cc239cc9e4338f6768afdcb069f11e31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440695/ERR1440695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440695/ERR1440695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440695/PHESPV1910.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440695/PHESPV1910.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440695/ERR1440695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440695/ERR1440695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440695/PHESPV1910.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440695/PHESPV1910.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83133655;83739428 ERS1196074 ERX1511073 GENOMIC 253155940 2016-06-10 PHESPV1910 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440695/PHESPV1910.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440695/PHESPV1910.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440695 PHESPV1910 ERR1440685 PHESPV1900 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440685 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440685 6f73ff4dfc554c7fccabe03764620bfb;e5e9bc1f57804eb21c4e417e27756dd5 1313 133266338 bfab0c0914addccd1ac0b4784b91751c;0f17ff867594064222602cb753a91959 SAMEA4024954 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440685/ERR1440685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440685/ERR1440685_2.fastq.gz 1424106 WGS PHESPV1900 RANDOM 95041051;95109347 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8ab7bfc53dcb538281974a9b2f71cfc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440685/ERR1440685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440685/ERR1440685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440685/PHESPV1900.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440685/PHESPV1900.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440685/ERR1440685_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440685/ERR1440685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440685/PHESPV1900.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440685/PHESPV1900.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91323851;91391055 ERS1196064 ERX1511063 GENOMIC 277969105 2016-06-10 PHESPV1900 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440685/PHESPV1900.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440685/PHESPV1900.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440685 PHESPV1900 ERR1440681 PHESPV1896 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440681 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440681 b7bc254a0eb100c66fcb635c0de0ed5e;7d9c79366b30e4c2f1e05387181e4876 1313 123663107 71fac14f54aa818d7bc57e93eacfa1f9;b8e0e6e2ba07f5be08793327c2a056c2 SAMEA4024950 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440681/ERR1440681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440681/ERR1440681_2.fastq.gz 1339475 WGS PHESPV1896 RANDOM 88181967;88537482 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9717a082ad074929f696b5eb69330a91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440681/ERR1440681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440681/ERR1440681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440681/PHESPV1896.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440681/PHESPV1896.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440681/ERR1440681_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440681/ERR1440681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440681/PHESPV1896.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440681/PHESPV1896.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84705702;85058423 ERS1196060 ERX1511059 GENOMIC 260043987 2016-06-10 PHESPV1896 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440681/PHESPV1896.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440681/PHESPV1896.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440681 PHESPV1896 ERR1440702 PHESPV1917 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440702 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440702 5b0ed635e43e08ad7cf36f3314976ed7;46ed87c004a58c6157e8d520379691fd 1313 135781533 4ff8f3dfa488c239c87104e456bb8853;437ae4680d3e6ef7bac2fc52591435f7 SAMEA4024971 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440702/ERR1440702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440702/ERR1440702_2.fastq.gz 1457446 WGS PHESPV1917 RANDOM 96451268;97204719 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b6403986edb2dd0548385dfd20d1e64 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440702/ERR1440702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440702/ERR1440702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440702/PHESPV1917.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440702/PHESPV1917.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440702/ERR1440702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440702/ERR1440702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440702/PHESPV1917.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440702/PHESPV1917.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92665777;93417264 ERS1196081 ERX1511080 GENOMIC 283845781 2016-06-10 PHESPV1917 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440702/PHESPV1917.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440702/PHESPV1917.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440702 PHESPV1917 ERR1440721 PHESPV1936 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440721 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440721 bf54d9ace7f4d68a722043ca3a153d5d;bdf47d2806824187bd9a82917a11e976 1313 137139226 4d701bb40d7efbf7a7aad5533c4a5c7f;765bd6474abad4561fee4f172e0d9fac SAMEA4024990 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440721/ERR1440721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440721/ERR1440721_2.fastq.gz 1466372 WGS PHESPV1936 RANDOM 97459127;97954817 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f39e60354ba8142ab386ed6e97fff96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440721/ERR1440721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440721/ERR1440721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440721/PHESPV1936.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440721/PHESPV1936.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440721/ERR1440721_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440721/ERR1440721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440721/PHESPV1936.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440721/PHESPV1936.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93654700;94149273 ERS1196100 ERX1511099 GENOMIC 286048982 2016-06-10 PHESPV1936 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440721/PHESPV1936.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440721/PHESPV1936.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440721 PHESPV1936 ERR1440722 PHESPV1937 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440722 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440722 1efc553f095a5e4d3bde52f01202b8d7;a079990fef7632f8e1618fe195863ace 1313 116666476 7abcaacdf73c31eb11994b2a327bc739;3083bd1449aaad318363c33eb72cd165 SAMEA4024991 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440722/ERR1440722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440722/ERR1440722_2.fastq.gz 1257842 WGS PHESPV1937 RANDOM 83371617;83357389 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 80e6859191303dc6c3f3731eacf3af90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440722/ERR1440722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440722/ERR1440722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440722/PHESPV1937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440722/PHESPV1937.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440722/ERR1440722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440722/ERR1440722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440722/PHESPV1937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440722/PHESPV1937.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80108632;80093523 ERS1196101 ERX1511100 GENOMIC 244692699 2016-06-10 PHESPV1937 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440722/PHESPV1937.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440722/PHESPV1937.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440722 PHESPV1937 ERR1440706 PHESPV1921 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440706 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440706 8ede762e360da2f9c62bb3140302b7d9;ac3482639785b32014fe6f3f6b341e8f 1313 134416179 4f7ac0c0653a79d06757fa41ea187f37;95da91a5e0172e214bae3166171e99ff SAMEA4024975 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440706/ERR1440706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440706/ERR1440706_2.fastq.gz 1433864 WGS PHESPV1921 RANDOM 94369901;96677102 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 508c396ec21e1d8163f5cddfacd5f75d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440706/ERR1440706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440706/ERR1440706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440706/PHESPV1921.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440706/PHESPV1921.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440706/ERR1440706_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440706/ERR1440706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440706/PHESPV1921.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440706/PHESPV1921.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90642035;92936433 ERS1196085 ERX1511084 GENOMIC 277162253 2016-06-10 PHESPV1921 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440706/PHESPV1921.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440706/PHESPV1921.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440706 PHESPV1921 ERR1440705 PHESPV1920 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440705 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440705 f52fcf968ee4260de3f583f09e6d4606;85eebffec6c919a04298dcb273dc17f2 1313 152707583 a8d5849c452c0eecc61d1b54bff58fa7;35856e15a1e1de9ca32e808eb6cf54d3 SAMEA4024974 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440705/ERR1440705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440705/ERR1440705_2.fastq.gz 1620364 WGS PHESPV1920 RANDOM 107296311;109695736 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline da3f26cbb510763d2433240dd4163036 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440705/ERR1440705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440705/ERR1440705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440705/PHESPV1920.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440705/PHESPV1920.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440705/ERR1440705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440705/ERR1440705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440705/PHESPV1920.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440705/PHESPV1920.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102973984;105359621 ERS1196084 ERX1511083 GENOMIC 314173552 2016-06-10 PHESPV1920 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440705/PHESPV1920.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440705/PHESPV1920.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440705 PHESPV1920 ERR1440703 PHESPV1918 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440703 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440703 924661f8f0fe59278955236f52b9a4a3;3b743af3a1b4464b61da09de09c21b1a 1313 96889544 d86f0bb028ab2b695a7eac084437b072;5b9e32cd070c583e56f8a13bd0108d6c SAMEA4024972 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440703/ERR1440703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440703/ERR1440703_2.fastq.gz 1042898 WGS PHESPV1918 RANDOM 69083458;69303972 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b2821094623e8e922c0c52577a0a003d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440703/ERR1440703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440703/ERR1440703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440703/PHESPV1918.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440703/PHESPV1918.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440703/ERR1440703_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440703/ERR1440703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440703/PHESPV1918.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440703/PHESPV1918.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66433014;66650520 ERS1196082 ERX1511081 GENOMIC 202780104 2016-06-10 PHESPV1918 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440703/PHESPV1918.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440703/PHESPV1918.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440703 PHESPV1918 ERR1440752 PHESPV1967 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440752 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440752 780dcd857a9c3d5e2b6e5dcb5f909f0d;65f271cd01c2cf95bc8cdc3b5df85a1a 1313 110431155 9418202728f3d416e3222b3f5bafd659;621157dbd4e2dad78a710282f6b4d153 SAMEA4025021 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440752/ERR1440752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440752/ERR1440752_2.fastq.gz 1206677 WGS PHESPV1967 RANDOM 78481345;81301786 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7032680b4b8a97a019883fbff712045d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440752/ERR1440752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440752/ERR1440752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440752/PHESPV1967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440752/PHESPV1967.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440752/ERR1440752_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440752/ERR1440752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440752/PHESPV1967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440752/PHESPV1967.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75490003;78292876 ERS1196131 ERX1511130 GENOMIC 235836999 2016-06-10 PHESPV1967 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440752/PHESPV1967.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440752/PHESPV1967.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440752 PHESPV1967 ERR1440758 PHESPV1973 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440758 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440758 758dc92866091955fa1aaefb1b777c73;6af7726c9e243979e4c9c1a81fbc0ace 1313 139521524 1cbd6e91cd54253d7c9d0ead77124a82;b8cc7315b473b51b03810ace96ad6dc1 SAMEA4025027 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440758/ERR1440758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440758/ERR1440758_2.fastq.gz 1573949 WGS PHESPV1973 RANDOM 101613200;102077545 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e93990b9890db1bb9af0d8ed442082c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440758/ERR1440758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440758/ERR1440758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440758/PHESPV1973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440758/PHESPV1973.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440758/ERR1440758_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440758/ERR1440758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440758/PHESPV1973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440758/PHESPV1973.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97568689;98040315 ERS1196137 ERX1511136 GENOMIC 309084172 2016-06-10 PHESPV1973 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440758/PHESPV1973.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440758/PHESPV1973.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440758 PHESPV1973 ERR1440760 PHESPV1975 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440760 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440760 a866ad73d967fd07af5e4bf5925e2d22;ecb7b255bb72fe0d5ff230e041e92ba5 1313 149253910 8e582a017609ca7e4473d1ea44b3053b;e13c7e106baefb1096895bbd280fdf4b SAMEA4025029 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440760/ERR1440760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440760/ERR1440760_2.fastq.gz 1703618 WGS PHESPV1975 RANDOM 108750080;109254478 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5f9318d59cdc9d04ca671c2396022e51 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440760/ERR1440760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440760/ERR1440760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440760/PHESPV1975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440760/PHESPV1975.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440760/ERR1440760_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440760/ERR1440760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440760/PHESPV1975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440760/PHESPV1975.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104277697;104785089 ERS1196139 ERX1511138 GENOMIC 331325547 2016-06-10 PHESPV1975 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440760/PHESPV1975.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440760/PHESPV1975.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440760 PHESPV1975 ERR1440759 PHESPV1974 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440759 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440759 eafc3383a2cbb4d103d530dfc0fba2b4;5ac97c467a4b033a909d58fe5955265e 1313 154418591 4c1fa063b6e790bc11a3189d5c6d3f42;dc82d43b7e774ba3036293e75980485a SAMEA4025028 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440759/ERR1440759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440759/ERR1440759_2.fastq.gz 1711502 WGS PHESPV1974 RANDOM 110293730;114103162 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f9d59a157dde00265f83d6d0fc967749 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440759/ERR1440759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440759/ERR1440759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440759/PHESPV1974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440759/PHESPV1974.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440759/ERR1440759_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440759/ERR1440759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440759/PHESPV1974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440759/PHESPV1974.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105834387;109626352 ERS1196138 ERX1511137 GENOMIC 335563757 2016-06-10 PHESPV1974 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440759/PHESPV1974.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440759/PHESPV1974.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440759 PHESPV1974 ERR1440761 PHESPV1976 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440761 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440761 565705c8e682f231e8d1f75845885b23;d1c9a58398ca7ca136a25416c707ca34 1313 135025914 da14bee2414cd29cc845d4acf2044f59;a6ece787582bbfa4d39cb66c773e8578 SAMEA4025030 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440761/ERR1440761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440761/ERR1440761_2.fastq.gz 1528208 WGS PHESPV1976 RANDOM 97210967;99068298 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b2f2ed916756dcc2cb2247025a1a6f49 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440761/ERR1440761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440761/ERR1440761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440761/PHESPV1976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440761/PHESPV1976.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440761/ERR1440761_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440761/ERR1440761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440761/PHESPV1976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440761/PHESPV1976.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93231957;95084522 ERS1196140 ERX1511139 GENOMIC 293646426 2016-06-10 PHESPV1976 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440761/PHESPV1976.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440761/PHESPV1976.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440761 PHESPV1976 ERR1440762 PHESPV1977 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440762 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440762 0900d7570e53cc740f65d43793293ac6;c8d100ad7548e232353da1b8f4c96ed7 1313 178324932 711d35dc0c9d7164b8880a9c2550c728;22a1c805f02a2481023ab36e63f3d4e5 SAMEA4025031 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440762/ERR1440762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440762/ERR1440762_2.fastq.gz 2011768 WGS PHESPV1977 RANDOM 128879626;130770458 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6bf3e363df313249660a134950dc8306 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440762/ERR1440762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440762/ERR1440762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440762/PHESPV1977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440762/PHESPV1977.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440762/ERR1440762_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440762/ERR1440762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440762/PHESPV1977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440762/PHESPV1977.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123681156;125566356 ERS1196141 ERX1511140 GENOMIC 393196852 2016-06-10 PHESPV1977 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440762/PHESPV1977.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440762/PHESPV1977.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440762 PHESPV1977 ERR1440763 PHESPV1978 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440763 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440763 54de57dec1023681048d53ceae6afb61;9c5ae63b5590fbe00db8080fee2aabb6 1313 154900929 b14ed6fe5c3276511f7e909395f1da11;a75bc1e25684c8c4fa9a2904fe6ec842 SAMEA4025032 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440763/ERR1440763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440763/ERR1440763_2.fastq.gz 1760893 WGS PHESPV1978 RANDOM 112204520;113761360 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f373ce376bfe590cfc8c1d481f6d8ebe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440763/ERR1440763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440763/ERR1440763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440763/PHESPV1978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440763/PHESPV1978.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440763/ERR1440763_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440763/ERR1440763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440763/PHESPV1978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440763/PHESPV1978.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107597097;109151592 ERS1196142 ERX1511141 GENOMIC 341994321 2016-06-10 PHESPV1978 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440763/PHESPV1978.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440763/PHESPV1978.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440763 PHESPV1978 ERR1440764 PHESPV1979 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440764 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440764 6ebc921eddc6ee631448e72b4d5d8426;f2f73f8aa3c3d7b951c0e469e61dbb07 1313 159701604 94cc24fab1137be7517ef1a0b3407513;ce84af0d17ce36cf6551e447b0fe4eba SAMEA4025033 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440764/ERR1440764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440764/ERR1440764_2.fastq.gz 1812717 WGS PHESPV1979 RANDOM 116013554;116911852 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8f97d73ab4fb102a8deeb4a0097886a6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440764/ERR1440764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440764/ERR1440764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440764/PHESPV1979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440764/PHESPV1979.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440764/ERR1440764_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440764/ERR1440764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440764/PHESPV1979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440764/PHESPV1979.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111278335;112174703 ERS1196143 ERX1511142 GENOMIC 353021272 2016-06-10 PHESPV1979 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440764/PHESPV1979.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440764/PHESPV1979.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440764 PHESPV1979 ERR1440766 PHESPV1981 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440766 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440766 806f7e93af7047c90419e2f6e5107b52;bb1d6e63027bb8b8e40e0dd864bcabf8 1313 137056244 5e3951fe871dd57cf3d62108fe39d052;9e5db3995d41f150220e1c0b8ebb505f SAMEA4025035 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440766/ERR1440766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440766/ERR1440766_2.fastq.gz 1516894 WGS PHESPV1981 RANDOM 97757607;101213838 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6e38414d230ddfd3dee7367e9081d747 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440766/ERR1440766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440766/ERR1440766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440766/PHESPV1981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440766/PHESPV1981.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440766/ERR1440766_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440766/ERR1440766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440766/PHESPV1981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440766/PHESPV1981.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93872796;97311895 ERS1196145 ERX1511144 GENOMIC 296806477 2016-06-10 PHESPV1981 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440766/PHESPV1981.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440766/PHESPV1981.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440766 PHESPV1981 ERR1440765 PHESPV1980 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440765 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440765 7a501d3d7bef2f5ded7c4ee0851fb4f9;51c5d70edc870e3b44422edab2780efe 1313 156665276 bea984ef5f1630ec9389d9d11a700adc;b1e809e2d829303429b38b0c5d42ff0e SAMEA4025034 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440765/ERR1440765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440765/ERR1440765_2.fastq.gz 1765879 WGS PHESPV1980 RANDOM 112409059;115399919 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 532fb123f2469655462308380e957857 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440765/ERR1440765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440765/ERR1440765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440765/PHESPV1980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440765/PHESPV1980.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440765/ERR1440765_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440765/ERR1440765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440765/PHESPV1980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440765/PHESPV1980.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107758163;110739284 ERS1196144 ERX1511143 GENOMIC 341550051 2016-06-10 PHESPV1980 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440765/PHESPV1980.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440765/PHESPV1980.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440765 PHESPV1980 ERR1440767 PHESPV1982 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440767 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440767 554d5d9f235ce08e805d827799ae5ec5;978dfad50fba106503d11da33e1920e4 1313 144190662 15b51e359af461c4f8048cc8b33e3da6;1b9f0e0a2427d9a85776cb4ac332c50c SAMEA4025036 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440767/ERR1440767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440767/ERR1440767_2.fastq.gz 1604722 WGS PHESPV1982 RANDOM 104093447;105659827 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2a61f8990b72c8a3cbd5c743dfdf5c46 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440767/ERR1440767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440767/ERR1440767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440767/PHESPV1982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440767/PHESPV1982.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440767/ERR1440767_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440767/ERR1440767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440767/PHESPV1982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440767/PHESPV1982.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99920309;101477214 ERS1196146 ERX1511145 GENOMIC 314317212 2016-06-10 PHESPV1982 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440767/PHESPV1982.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440767/PHESPV1982.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440767 PHESPV1982 ERR1440769 PHESPV1984 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440769 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440769 8754c866281ee15a7fd9ec69d8a86e77;a8e9877d4bee03d4daccb7705a580324 1313 119467938 29b53302326066fa082b59e36308bfba;319429f4bb38e26c278d3f9c4c507d67 SAMEA4025038 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440769/ERR1440769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440769/ERR1440769_2.fastq.gz 1392334 WGS PHESPV1984 RANDOM 87014342;87184172 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b029c755417ee540b2c0388ae707dbbb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440769/ERR1440769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440769/ERR1440769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440769/PHESPV1984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440769/PHESPV1984.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440769/ERR1440769_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440769/ERR1440769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440769/PHESPV1984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440769/PHESPV1984.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83501424;83679442 ERS1196148 ERX1511147 GENOMIC 262551586 2016-06-10 PHESPV1984 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440769/PHESPV1984.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440769/PHESPV1984.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440769 PHESPV1984 ERR1440770 PHESPV1985 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440770 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440770 68a2f112d5949ec3fb90f044e478015c;31f53dc1586cee85a11edf3f6b6cf5d1 1313 130505669 5e4bf61a0d512faf23cd6556685a87e0;69c0582eaaa46196a67df2d5e42cc2f1 SAMEA4025039 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440770/ERR1440770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440770/ERR1440770_2.fastq.gz 1470996 WGS PHESPV1985 RANDOM 94220986;95827671 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3448755ddd3bcfd23e766f8cf9915ed6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440770/ERR1440770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440770/ERR1440770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440770/PHESPV1985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440770/PHESPV1985.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440770/ERR1440770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440770/ERR1440770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440770/PHESPV1985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440770/PHESPV1985.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90479205;92080592 ERS1196149 ERX1511148 GENOMIC 286892878 2016-06-10 PHESPV1985 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440770/PHESPV1985.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440770/PHESPV1985.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440770 PHESPV1985 ERR1440771 PHESPV1986 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440771 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440771 4ba64ca373638f091dac81ad845674b3;fd12b5a8bfb5f1461a41bf6fba8f379e 1313 163948097 f603d7216a5e5555fec56cba990915ad;c95f6507429cae4c8a6eb29cf222a7f8 SAMEA4025040 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440771/ERR1440771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440771/ERR1440771_2.fastq.gz 1843240 WGS PHESPV1986 RANDOM 118637601;120296277 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0715dd6c71ecc53fe78f57d2daff0c22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440771/ERR1440771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440771/ERR1440771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440771/PHESPV1986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440771/PHESPV1986.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440771/ERR1440771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440771/ERR1440771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440771/PHESPV1986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440771/PHESPV1986.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113822080;115476779 ERS1196150 ERX1511149 GENOMIC 361274330 2016-06-10 PHESPV1986 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440771/PHESPV1986.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440771/PHESPV1986.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440771 PHESPV1986 ERR1440772 PHESPV1987 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440772 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440772 8397294c4dc6faf8ad086d9212ceb22d;96fb532aba63e84704f0b164f3296377 1313 144458150 101ce8e46726d40e0317b9ac44b41037;f21128bc0b5b45462ffccf5e723d2b4a SAMEA4025041 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440772/ERR1440772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440772/ERR1440772_2.fastq.gz 1653876 WGS PHESPV1987 RANDOM 105000573;105739107 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e010972d98aef0e6bc5288f47f36c4c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440772/ERR1440772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440772/ERR1440772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440772/PHESPV1987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440772/PHESPV1987.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440772/ERR1440772_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440772/ERR1440772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440772/PHESPV1987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440772/PHESPV1987.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100677343;101420081 ERS1196151 ERX1511150 GENOMIC 319238959 2016-06-10 PHESPV1987 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440772/PHESPV1987.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440772/PHESPV1987.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440772 PHESPV1987 ERR1440776 PHESPV1991 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440776 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440776 9f0658da388185a404c51a33aaf3cc2c;62ad91c0c2612e4b9864649d9d657d34 1313 165006868 5bfae484fe3d94fca180a8141dbd0dbe;149702b88595cb59ab6fd26b8ee0055e SAMEA4025045 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440776/ERR1440776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440776/ERR1440776_2.fastq.gz 1828923 WGS PHESPV1991 RANDOM 117191229;122139863 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 220626b3df937e39522dc3c3dba9e8f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440776/ERR1440776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440776/ERR1440776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440776/PHESPV1991.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440776/PHESPV1991.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440776/ERR1440776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440776/ERR1440776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440776/PHESPV1991.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440776/PHESPV1991.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112422975;117345817 ERS1196155 ERX1511154 GENOMIC 357142027 2016-06-10 PHESPV1991 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440776/PHESPV1991.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440776/PHESPV1991.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440776 PHESPV1991 ERR1440775 PHESPV1990 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440775 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440775 8465dc9052032fd0b0b32a7eec3b7335;eb71004e5ffd465614e6f0a482dbc420 1313 153850608 4faf00c039be6bfbfe35ad8ce9d35734;a38d74dd5e8522dcb7c1b07c3ec023ba SAMEA4025044 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440775/ERR1440775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440775/ERR1440775_2.fastq.gz 1756326 WGS PHESPV1990 RANDOM 111496464;112813101 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 99da6618b270f92818454db2de17e0b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440775/ERR1440775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440775/ERR1440775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440775/PHESPV1990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440775/PHESPV1990.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440775/ERR1440775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440775/ERR1440775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440775/PHESPV1990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440775/PHESPV1990.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106906167;108219708 ERS1196154 ERX1511153 GENOMIC 339442762 2016-06-10 PHESPV1990 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440775/PHESPV1990.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440775/PHESPV1990.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440775 PHESPV1990 ERR1440783 PHESPV1998 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440783 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440783 53cc4e02f3c593c2ecaaac86eef9e254;1069cd589b66149dcac2a11890b9d122 1313 118825081 d55d64ba6887b73f2b20bf4dffbd0434;a7af8703d574f513d7f01e238becc290 SAMEA4025052 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440783/ERR1440783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440783/ERR1440783_2.fastq.gz 1350332 WGS PHESPV1998 RANDOM 86258388;86832559 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a2705e003bf23e23ca38bd7f992421b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440783/ERR1440783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440783/ERR1440783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440783/PHESPV1998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440783/PHESPV1998.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440783/ERR1440783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440783/ERR1440783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440783/PHESPV1998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440783/PHESPV1998.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82841725;83412820 ERS1196162 ERX1511161 GENOMIC 261503672 2016-06-10 PHESPV1998 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440783/PHESPV1998.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440783/PHESPV1998.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440783 PHESPV1998 ERR1438847 PHESPV0057 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438847 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438847 7d2062f9040e0282287162938f4d9276;fafe406ac8d98725474048db7f617668 1313 91609313 b38481985f9f4ed7e15ca13d89adae9d;6fc4101d69183aa1f731a31ce9a55070 SAMEA4023116 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438847/ERR1438847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438847/ERR1438847_2.fastq.gz 1069333 WGS PHESPV0057 RANDOM 60934442;64147135 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee926fb0ddc8302b1ad4c64f4ebaee10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438847/ERR1438847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438847/ERR1438847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438847/PHESPV0057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438847/PHESPV0057.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438847/ERR1438847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438847/ERR1438847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438847/PHESPV0057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438847/PHESPV0057.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64629359;67810938 ERS1194226 ERX1509225 GENOMIC 212550365 2016-06-10 PHESPV0057 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438847/PHESPV0057.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438847/PHESPV0057.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438847 PHESPV0057 ERR1438911 PHESPV0121 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438911 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438911 962947ba08b350e447c958baa8a658d0;235ddfca447f147f41d62b2e19ca8e7c 1313 142567742 23d8d0319587e93e3cd0df5cfb9ee5ea;eb24bb33232aa408943eb93ecfbbbd69 SAMEA4023180 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438911/ERR1438911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438911/ERR1438911_2.fastq.gz 1620957 WGS PHESPV0121 RANDOM 95040750;98506067 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8ae94af9ae474360aa70c371f7677aa2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438911/ERR1438911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438911/ERR1438911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438911/PHESPV0121.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438911/PHESPV0121.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438911/ERR1438911_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438911/ERR1438911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438911/PHESPV0121.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438911/PHESPV0121.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100371500;103807485 ERS1194290 ERX1509289 GENOMIC 321532718 2016-06-10 PHESPV0121 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438911/PHESPV0121.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438911/PHESPV0121.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438911 PHESPV0121 ERR1439282 PHESPV0493 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439282 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439282 60f64e4f299799f2edcc4afe19f27db4;adb72d05e170d1ec6673b86b1c386185 1313 239364888 5f907d76788efcebc076555d3294e0b6;91cdc2737dde3186f7ac73e0ab4579f1 SAMEA4023551 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439282/ERR1439282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439282/ERR1439282_2.fastq.gz 2953497 WGS PHESPV0493 RANDOM 161365738;166541332 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 31c590a0c61b0c579e12cdc76dc3ad72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439282/ERR1439282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439282/ERR1439282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439282/PHESPV0493.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439282/PHESPV0493.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439282/ERR1439282_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439282/ERR1439282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439282/PHESPV0493.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439282/PHESPV0493.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 170371420;175509683 ERS1194661 ERX1509660 GENOMIC 577528692 2016-06-10 PHESPV0493 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439282/PHESPV0493.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439282/PHESPV0493.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439282 PHESPV0493 ERR1439406 PHESPV0617 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439406 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439406 c572f64032a0ee153532a53fe93a5f73;77672a5f8553b995e6eb8c93afa84a46 1313 240043861 26ce8c0e8e7a4b3289b7896244bcaacd;e3867448c1a6fed65f5ca4c079f5ec5a SAMEA4023675 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439406/ERR1439406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439406/ERR1439406_2.fastq.gz 3009076 WGS PHESPV0617 RANDOM 162966080;168118279 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5b300112dabb881fe8f7f667a6c4ad4e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439406/ERR1439406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439406/ERR1439406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439406/PHESPV0617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439406/PHESPV0617.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439406/ERR1439406_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439406/ERR1439406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439406/PHESPV0617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439406/PHESPV0617.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 172126646;177284455 ERS1194785 ERX1509784 GENOMIC 590268412 2016-06-10 PHESPV0617 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439406/PHESPV0617.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439406/PHESPV0617.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439406 PHESPV0617 ERR1439474 PHESPV0685 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439474 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439474 f6d66cf876df412e434200a23867b298;4b31bfe58e54360e64b8691a9a6a938c 1313 104138797 99ea473914f8a8db03842112d6c39547;3b7f3ae30b6e3c8a95431e5e1db2c6fd SAMEA4023743 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439474/ERR1439474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439474/ERR1439474_2.fastq.gz 1258125 WGS PHESPV0685 RANDOM 70201257;72866440 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 318d26388f49d09c521f3b4460196df6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439474/ERR1439474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439474/ERR1439474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439474/PHESPV0685.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439474/PHESPV0685.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439474/ERR1439474_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439474/ERR1439474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439474/PHESPV0685.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439474/PHESPV0685.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74527633;77246346 ERS1194853 ERX1509852 GENOMIC 246186172 2016-06-10 PHESPV0685 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439474/PHESPV0685.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439474/PHESPV0685.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439474 PHESPV0685 ERR1439481 PHESPV0692 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439481 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439481 e727f2bfe3b5de924f1a2fc87a67b27a;31f7e033d27cd1e11c0a5059bf774032 1313 109462723 b24a289f760c85f2787ef23ae3334a89;877ff74f13d77e9154ce9866518bfbeb SAMEA4023750 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439481/ERR1439481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439481/ERR1439481_2.fastq.gz 1323487 WGS PHESPV0692 RANDOM 73692832;76692871 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 324f12996fd69015d4e8f74da346ed34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439481/ERR1439481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439481/ERR1439481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439481/PHESPV0692.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439481/PHESPV0692.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439481/ERR1439481_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439481/ERR1439481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439481/PHESPV0692.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439481/PHESPV0692.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78177773;81221655 ERS1194860 ERX1509859 GENOMIC 258983452 2016-06-10 PHESPV0692 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439481/PHESPV0692.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439481/PHESPV0692.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439481 PHESPV0692 ERR1439485 PHESPV0696 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439485 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439485 83a533bfae6b9ab1ebc2e8fb81736dfe;4785719f41f7958d17ec0e2ecfa53e09 1313 98307925 faaff247d32d1b14712ebc221c7b9d3d;041b99d59d03c598ff26ca7c5d278d4c SAMEA4023754 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439485/ERR1439485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439485/ERR1439485_2.fastq.gz 1182204 WGS PHESPV0696 RANDOM 65863942;68996103 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d02d26ecdb897d43aa3072cd15e1593c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439485/ERR1439485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439485/ERR1439485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439485/PHESPV0696.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439485/PHESPV0696.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439485/ERR1439485_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439485/ERR1439485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439485/PHESPV0696.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439485/PHESPV0696.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69937892;73099777 ERS1194864 ERX1509863 GENOMIC 230986309 2016-06-10 PHESPV0696 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439485/PHESPV0696.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439485/PHESPV0696.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439485 PHESPV0696 ERR1439495 PHESPV0706 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439495 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439495 ff0af34034cd4007db342ad6a1c67fd4;a24ad878fc49cab3167d07b6c21e493a 1313 98719151 ed011c0f9ffe47aab747c2005c8a2ccd;9e547d20dc2897acfa620ea411bbe9f3 SAMEA4023764 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439495/ERR1439495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439495/ERR1439495_2.fastq.gz 1186647 WGS PHESPV0706 RANDOM 65714001;69630692 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5f35790f37a8fc6ba0dc7ed394d9d9d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439495/ERR1439495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439495/ERR1439495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439495/PHESPV0706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439495/PHESPV0706.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439495/ERR1439495_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439495/ERR1439495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439495/PHESPV0706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439495/PHESPV0706.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69791138;73740605 ERS1194874 ERX1509873 GENOMIC 231856039 2016-06-10 PHESPV0706 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439495/PHESPV0706.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439495/PHESPV0706.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439495 PHESPV0706 ERR1439496 PHESPV0707 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439496 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439496 b21fb9b20d26f2dd1d81bdc8ccba0499;7af3ea875b934060fd11e9477d284e30 1313 118437574 f561aae6e37d2ebb99fc0c29f7a20643;1939c5aab5853f4b9deb2b4bbe913bda SAMEA4023765 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439496/ERR1439496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439496/ERR1439496_2.fastq.gz 1432951 WGS PHESPV0707 RANDOM 79650345;83027351 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2dc55f44ec4c11e80897df87640af476 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439496/ERR1439496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439496/ERR1439496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439496/PHESPV0707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439496/PHESPV0707.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439496/ERR1439496_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439496/ERR1439496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439496/PHESPV0707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439496/PHESPV0707.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84473360;87904863 ERS1194875 ERX1509874 GENOMIC 280407038 2016-06-10 PHESPV0707 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439496/PHESPV0707.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439496/PHESPV0707.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439496 PHESPV0707 ERR1439515 PHESPV0726 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439515 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439515 9d69edb9f0e24f28319916fc91ebb5da;02e4ba9d1d3bb366d1bf8b2102c3090c 1313 156938348 83e80ca7aed0f5e36931f9c0d23d7825;011c5da5e87062e49d61ddc2b51a3cbb SAMEA4023784 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439515/ERR1439515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439515/ERR1439515_2.fastq.gz 1886021 WGS PHESPV0726 RANDOM 107008393;107667050 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dd9f4de11d9cf9fa7b39a6dc35077a88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439515/ERR1439515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439515/ERR1439515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439515/PHESPV0726.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439515/PHESPV0726.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439515/ERR1439515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439515/ERR1439515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439515/PHESPV0726.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439515/PHESPV0726.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113190343;113854285 ERS1194894 ERX1509893 GENOMIC 368217155 2016-06-10 PHESPV0726 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439515/PHESPV0726.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439515/PHESPV0726.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439515 PHESPV0726 ERR1439534 PHESPV0745 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439534 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439534 d0cfe9e0af17a6a2db2f1a9c6c9c1dc1;e35bcf2eda8f587f6beca1e3381efde9 1313 142476483 76680d5b5ceee7ae3571736fa87ed545;e933bd827dd7cddaf8af893afc3b5d0b SAMEA4023803 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439534/ERR1439534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439534/ERR1439534_2.fastq.gz 1708202 WGS PHESPV0745 RANDOM 96606863;97618853 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17bd39be4efeca75cfcaef09521cde52 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439534/ERR1439534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439534/ERR1439534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439534/PHESPV0745.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439534/PHESPV0745.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439534/ERR1439534_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439534/ERR1439534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439534/PHESPV0745.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439534/PHESPV0745.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102275863;103297019 ERS1194913 ERX1509912 GENOMIC 333154559 2016-06-10 PHESPV0745 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439534/PHESPV0745.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439534/PHESPV0745.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439534 PHESPV0745 ERR1439517 PHESPV0728 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439517 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439517 4683f6990942060fca079fac9c472c76;da9eafa7cbd713fa8ead28886bc57d1d 1313 102412300 dfb684019f42814da70bc665b8997cb1;7109d38316be4ea6c5169884f67396a1 SAMEA4023786 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439517/ERR1439517_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439517/ERR1439517_2.fastq.gz 1223943 WGS PHESPV0728 RANDOM 69105346;69999881 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f6f2205c5664ccb0185757cef2b2dce9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439517/ERR1439517_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439517/ERR1439517_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439517/PHESPV0728.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439517/PHESPV0728.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439517/ERR1439517_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439517/ERR1439517_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439517/PHESPV0728.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439517/PHESPV0728.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73284775;74169120 ERS1194896 ERX1509895 GENOMIC 238542284 2016-06-10 PHESPV0728 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439517/PHESPV0728.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439517/PHESPV0728.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439517 PHESPV0728 ERR1439543 PHESPV0754 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439543 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439543 9ad5b8704d7361c694bfaeb9e329b9a6;76203b71713ae282dae5ef8477f2703b 1313 85167158 8cdc26409e9030fb2b4d761b39eb1a0c;0d0b5a2010ddcc0f562495d244665be9 SAMEA4023812 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439543/ERR1439543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439543/ERR1439543_2.fastq.gz 976785 WGS PHESPV0754 RANDOM 56503321;58259983 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 889cb16341544d6a5061662d35c87edd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439543/ERR1439543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439543/ERR1439543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439543/PHESPV0754.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439543/PHESPV0754.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439543/ERR1439543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439543/ERR1439543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439543/PHESPV0754.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439543/PHESPV0754.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59897716;61642754 ERS1194922 ERX1509921 GENOMIC 193690491 2016-06-10 PHESPV0754 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439543/PHESPV0754.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439543/PHESPV0754.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439543 PHESPV0754 ERR1439892 PHESPV1103 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439892 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439892 bdf7f0102742ca1c7dfd8bb823d86e1e;a36898316ec5e25fe461d396ac336b8a 1313 157972924 7867e8710941cf67b1012461ce2eb8a7;a7d7cf96d1f6d5fb9536e2735c2c1726 SAMEA4024161 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439892/ERR1439892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439892/ERR1439892_2.fastq.gz 1776375 WGS PHESPV1103 RANDOM 105901827;107569305 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 19b342066a8860ec57920ded9e1a00e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439892/ERR1439892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439892/ERR1439892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439892/PHESPV1103.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439892/PHESPV1103.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439892/ERR1439892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439892/ERR1439892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439892/PHESPV1103.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439892/PHESPV1103.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111697612;113382214 ERS1195271 ERX1510270 GENOMIC 352485629 2016-06-10 PHESPV1103 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439892/PHESPV1103.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439892/PHESPV1103.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439892 PHESPV1103 ERR1439897 PHESPV1108 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439897 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439897 f1e55e45c0c38dd748d9066189fd77db;18fef7c9e39f7fac416efc110788fc47 1313 262827002 feec4e3ebc2152b53af663fccbafd81f;45a9c8a85f249411f4e2079684140732 SAMEA4024166 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439897/ERR1439897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439897/ERR1439897_2.fastq.gz 2953987 WGS PHESPV1108 RANDOM 176845256;179161463 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6e2ad20f312fae6a4512ecde8039016c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439897/ERR1439897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439897/ERR1439897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439897/PHESPV1108.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439897/PHESPV1108.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439897/ERR1439897_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439897/ERR1439897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439897/PHESPV1108.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439897/PHESPV1108.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 185840030;188188365 ERS1195276 ERX1510275 GENOMIC 586530731 2016-06-10 PHESPV1108 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439897/PHESPV1108.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439897/PHESPV1108.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439897 PHESPV1108 ERR1439900 PHESPV1111 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439900 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439900 874a49b9975063883e6c087b24d37634;93ffedca19c88c0c9f58fc5226599319 1313 146509029 fa3ba3ae0b9a7b6b4bff4df6f4c49e7d;226485cb57f4442e1905cc109980bb04 SAMEA4024169 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439900/ERR1439900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439900/ERR1439900_2.fastq.gz 1631318 WGS PHESPV1111 RANDOM 97969317;99913708 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b1eaeaa3bd08364c0cc26f6c9dd94e91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439900/ERR1439900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439900/ERR1439900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439900/PHESPV1111.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439900/PHESPV1111.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439900/ERR1439900_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439900/ERR1439900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439900/PHESPV1111.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439900/PHESPV1111.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103377447;105332759 ERS1195279 ERX1510278 GENOMIC 323594452 2016-06-10 PHESPV1111 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439900/PHESPV1111.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439900/PHESPV1111.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439900 PHESPV1111 ERR1439904 PHESPV1115 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439904 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439904 5d3339d75c3dc08066e3c34af0ac0860;d8ba1bf0a7f842b9db41d207d8c354c1 1313 126636700 82f7979c62e46bc1e9f42d3860443ec9;d979155a265dd78e61fdd225c4f32772 SAMEA4024173 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439904/ERR1439904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439904/ERR1439904_2.fastq.gz 1412351 WGS PHESPV1115 RANDOM 84721373;86847916 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 75ac0c7b41ff65f7be391b4c92798606 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439904/ERR1439904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439904/ERR1439904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439904/PHESPV1115.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439904/PHESPV1115.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439904/ERR1439904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439904/ERR1439904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439904/PHESPV1115.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439904/PHESPV1115.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89462127;91592722 ERS1195283 ERX1510282 GENOMIC 280236422 2016-06-10 PHESPV1115 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439904/PHESPV1115.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439904/PHESPV1115.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439904 PHESPV1115 ERR1439909 PHESPV1120 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439909 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439909 e090284007f4c4242dfe309a727cbd3c;6c46ead1bec1f3f07d6be8107e234f28 1313 153422269 0423877d2a3f0c6e056e268d1253dc27;25c8be9806092f8fb25daf8332a96102 SAMEA4024178 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439909/ERR1439909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439909/ERR1439909_2.fastq.gz 1701832 WGS PHESPV1120 RANDOM 100614815;106344961 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7cc1584af4a706cb1fa1382eb9add01d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439909/ERR1439909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439909/ERR1439909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439909/PHESPV1120.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439909/PHESPV1120.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439909/ERR1439909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439909/ERR1439909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439909/PHESPV1120.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439909/PHESPV1120.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106201093;111881791 ERS1195288 ERX1510287 GENOMIC 337085008 2016-06-10 PHESPV1120 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439909/PHESPV1120.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439909/PHESPV1120.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439909 PHESPV1120 ERR1439912 PHESPV1123 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439912 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439912 9a0dbc13587580d6523968ec6178ab85;25a6faf220b2ad7abdaf20048ee93bd7 1313 156607120 4cfc49dde8349a21596fb76d2e6b8de2;49b6f01a561bc7eced8ab14b8f81d18c SAMEA4024181 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439912/ERR1439912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439912/ERR1439912_2.fastq.gz 1753563 WGS PHESPV1123 RANDOM 104744930;107221525 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17a0b97f10c6c31e41c0dc87891dcac0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439912/ERR1439912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439912/ERR1439912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439912/PHESPV1123.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439912/PHESPV1123.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439912/ERR1439912_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439912/ERR1439912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439912/PHESPV1123.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439912/PHESPV1123.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110492790;112968838 ERS1195291 ERX1510290 GENOMIC 348007696 2016-06-10 PHESPV1123 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439912/PHESPV1123.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439912/PHESPV1123.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439912 PHESPV1123 ERR1439915 PHESPV1126 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439915 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439915 f05a7c47fb351a8b7a95e092e0d3acf3;fa086ec9d81792bd82b4832e93f0c8b2 1313 142869885 872963b626d2e5f1c53324c5616dd3ed;167fdad6914e79b38f422ee4eba2b473 SAMEA4024184 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439915/ERR1439915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439915/ERR1439915_2.fastq.gz 1598381 WGS PHESPV1126 RANDOM 95711042;97533317 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac6eb022ffe68f7f296f6381ac4c65f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439915/ERR1439915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439915/ERR1439915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439915/PHESPV1126.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439915/PHESPV1126.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439915/ERR1439915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439915/ERR1439915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439915/PHESPV1126.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439915/PHESPV1126.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101009718;102839632 ERS1195294 ERX1510293 GENOMIC 317192861 2016-06-10 PHESPV1126 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439915/PHESPV1126.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439915/PHESPV1126.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439915 PHESPV1126 ERR1439920 PHESPV1131 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439920 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439920 4c457fe8ac33ea11331fda1165029b44;a9d9471b39267d2c5eb515307e690450 1313 106056029 0723f3ac43d77db7bbc9611de09e3b88;011a7a6b79940b92b368d7505f50a823 SAMEA4024189 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439920/ERR1439920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439920/ERR1439920_2.fastq.gz 1263995 WGS PHESPV1131 RANDOM 71256965;73662881 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fc391cff8bef9ac4ed9227ad05b3e25f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439920/ERR1439920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439920/ERR1439920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439920/PHESPV1131.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439920/PHESPV1131.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439920/ERR1439920_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439920/ERR1439920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439920/PHESPV1131.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439920/PHESPV1131.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75550587;77938393 ERS1195299 ERX1510298 GENOMIC 251327581 2016-06-10 PHESPV1131 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439920/PHESPV1131.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439920/PHESPV1131.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439920 PHESPV1131 ERR1439921 PHESPV1132 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439921 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439921 4a9b77dd9e03fd7aa61428f1ff200f38;4f47c243fa06170ce1030b7c78173858 1313 137971155 74e354ef3d2a2a1dfa0533c694050fee;5d843ab61cb4415ca64b339c9cf7d92c SAMEA4024190 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439921/ERR1439921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439921/ERR1439921_2.fastq.gz 1611365 WGS PHESPV1132 RANDOM 90943402;96597739 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a61174a81aff388b039b7c6181716702 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439921/ERR1439921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439921/ERR1439921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439921/PHESPV1132.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439921/PHESPV1132.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439921/ERR1439921_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439921/ERR1439921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439921/PHESPV1132.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439921/PHESPV1132.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96230159;101843216 ERS1195300 ERX1510299 GENOMIC 319944445 2016-06-10 PHESPV1132 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439921/PHESPV1132.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439921/PHESPV1132.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439921 PHESPV1132 ERR1439938 PHESPV1149 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439938 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439938 3b5742f54b8fb9f64a9b06903a3f7496;630af5fdd0aeeb58cd670feca7995c4d 1313 154862889 af93c872884d2b34cff9731248bc7c48;9b09355f5c26d3daf87dcac1757e8d92 SAMEA4024207 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439938/ERR1439938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439938/ERR1439938_2.fastq.gz 1818835 WGS PHESPV1149 RANDOM 102037471;107445126 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1a4580531167be74e1ab2abf666ae11e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439938/ERR1439938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439938/ERR1439938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439938/PHESPV1149.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439938/PHESPV1149.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439938/ERR1439938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439938/ERR1439938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439938/PHESPV1149.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439938/PHESPV1149.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107871489;113243584 ERS1195317 ERX1510316 GENOMIC 361103666 2016-06-10 PHESPV1149 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439938/PHESPV1149.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439938/PHESPV1149.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439938 PHESPV1149 ERR1439936 PHESPV1147 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439936 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439936 acbd828553c02e2575fcdd9075795c0c;2cdc2967323a4e2d5cd535b3cbc29eeb 1313 88596648 baa190ac897a2f011ab0e06419de74f3;859d63cfe396932aca478d4e8ab0e269 SAMEA4024205 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439936/ERR1439936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439936/ERR1439936_2.fastq.gz 1035198 WGS PHESPV1147 RANDOM 58672570;62271718 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 551aada345c409741de0746738a1a3c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439936/ERR1439936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439936/ERR1439936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439936/PHESPV1147.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439936/PHESPV1147.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439936/ERR1439936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439936/ERR1439936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439936/PHESPV1147.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439936/PHESPV1147.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62261008;65819486 ERS1195315 ERX1510314 GENOMIC 205628121 2016-06-10 PHESPV1147 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439936/PHESPV1147.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439936/PHESPV1147.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439936 PHESPV1147 ERR1439933 PHESPV1144 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439933 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439933 b1d40359e6bc7e88d0ecc879b2aa92f8;ff682b6f4d3985b13aaa8ffec0626421 1313 77736897 e1765ee67d31c462192893326b914ae7;a37ecd3c9d863ee6cb0e60ae619a0b99 SAMEA4024202 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439933/ERR1439933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439933/ERR1439933_2.fastq.gz 917259 WGS PHESPV1144 RANDOM 51941628;54126918 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e2a9235a7451c62078010b8b0e0e735 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439933/ERR1439933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439933/ERR1439933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439933/PHESPV1144.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439933/PHESPV1144.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439933/ERR1439933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439933/ERR1439933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439933/PHESPV1144.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439933/PHESPV1144.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55172955;57339081 ERS1195312 ERX1510311 GENOMIC 182277722 2016-06-10 PHESPV1144 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439933/PHESPV1144.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439933/PHESPV1144.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439933 PHESPV1144 ERR1439931 PHESPV1142 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439931 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439931 0fc512b1e18957f4fa322497497f173b;c404aed740e60bc4370cbd2a592bced1 1313 121882080 abf7e7a234d89a46808651b77665a8dd;7fffc025fd8d8a2074c37e46e3b61a81 SAMEA4024200 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439931/ERR1439931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439931/ERR1439931_2.fastq.gz 1412868 WGS PHESPV1142 RANDOM 80068674;85717728 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 34a244b5a395fb166045eee407499c88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439931/ERR1439931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439931/ERR1439931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439931/PHESPV1142.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439931/PHESPV1142.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439931/ERR1439931_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439931/ERR1439931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439931/PHESPV1142.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439931/PHESPV1142.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84776237;90391033 ERS1195310 ERX1510309 GENOMIC 280494625 2016-06-10 PHESPV1142 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439931/PHESPV1142.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439931/PHESPV1142.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439931 PHESPV1142 ERR1439928 PHESPV1139 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439928 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439928 a59f163293d98465bc5e7e7fa15c5090;3f6311bb118110a8845bb346d4816109 1313 84821252 a84f5d5ef089a7f643b38dbd110490fc;6c9871da8152b82bf3fbbd5382eaad10 SAMEA4024197 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439928/ERR1439928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439928/ERR1439928_2.fastq.gz 1000333 WGS PHESPV1139 RANDOM 56363369;59492440 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eb9cc4087d01d7fdb0b9dd6fd595f1a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439928/ERR1439928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439928/ERR1439928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439928/PHESPV1139.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439928/PHESPV1139.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439928/ERR1439928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439928/ERR1439928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439928/PHESPV1139.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439928/PHESPV1139.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59840209;62932359 ERS1195307 ERX1510306 GENOMIC 198732470 2016-06-10 PHESPV1139 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439928/PHESPV1139.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439928/PHESPV1139.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439928 PHESPV1139 ERR1439968 PHESPV1179 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439968 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439968 f27e73c22d17b165ba131280a1eb52be;b6e8aeb426108bf5152c9a7944e1f026 1313 116654178 bc980869d47b16adec0abc7f5d504d0c;b0d7fc2758f3904dfdba3517fd4b44db SAMEA4024237 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439968/ERR1439968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439968/ERR1439968_2.fastq.gz 1330215 WGS PHESPV1179 RANDOM 77522288;80322031 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1d0cdc0286500d54cab8d6900b56838 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439968/ERR1439968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439968/ERR1439968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439968/PHESPV1179.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439968/PHESPV1179.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439968/ERR1439968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439968/ERR1439968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439968/PHESPV1179.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439968/PHESPV1179.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81951153;84689844 ERS1195347 ERX1510346 GENOMIC 264135681 2016-06-10 PHESPV1179 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439968/PHESPV1179.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439968/PHESPV1179.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439968 PHESPV1179 ERR1439975 PHESPV1186 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439975 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439975 db64b0d0364f82272c2c69af49cd3539;475b6c51626ca37500866e2bd41e4552 1313 114098285 1406d79e09a062677eb4799eeff8cb98;a816a395c5fde98b344730356e682345 SAMEA4024244 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439975/ERR1439975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439975/ERR1439975_2.fastq.gz 1310551 WGS PHESPV1186 RANDOM 75689070;78898113 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 40fc9d8a47fa4c4b758c35400b2d81ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439975/ERR1439975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439975/ERR1439975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439975/PHESPV1186.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439975/PHESPV1186.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439975/ERR1439975_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439975/ERR1439975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439975/PHESPV1186.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439975/PHESPV1186.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80072002;83221038 ERS1195354 ERX1510353 GENOMIC 260292952 2016-06-10 PHESPV1186 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439975/PHESPV1186.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439975/PHESPV1186.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439975 PHESPV1186 ERR1439980 PHESPV1191 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439980 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439980 b5df910647b76ca986a6a03aafa66dc4;e43c1f30851c8bdb9f87a10824647e0d 1313 132133507 de573da3db0266250712a1948bbbb262;e9d8b47818eb5f7bc39f27702db4382a SAMEA4024249 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439980/ERR1439980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439980/ERR1439980_2.fastq.gz 1518913 WGS PHESPV1191 RANDOM 87641033;91051868 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8df6ce152734bb1236e3d101aba8bd49 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439980/ERR1439980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439980/ERR1439980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439980/PHESPV1191.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439980/PHESPV1191.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439980/ERR1439980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439980/ERR1439980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439980/PHESPV1191.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439980/PHESPV1191.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92692569;96041245 ERS1195359 ERX1510358 GENOMIC 301584271 2016-06-10 PHESPV1191 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439980/PHESPV1191.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439980/PHESPV1191.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439980 PHESPV1191 ERR1439996 PHESPV1207 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439996 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439996 e0c8e135e10fd7e34db5c84135476e71;72ca564464058243f98a508a92ef3bf7 1313 103657866 45cf394d6595918e2b40dd4a05d5c601;d8d929a657c091c154dc5cd151f63641 SAMEA4024265 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439996/ERR1439996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439996/ERR1439996_2.fastq.gz 1182548 WGS PHESPV1207 RANDOM 68146705;72153865 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 770e4601c21ecd5bd157dba36e218b4d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439996/ERR1439996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439996/ERR1439996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439996/PHESPV1207.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439996/PHESPV1207.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439996/ERR1439996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439996/ERR1439996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439996/PHESPV1207.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439996/PHESPV1207.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72177392;76108772 ERS1195375 ERX1510374 GENOMIC 234540660 2016-06-10 PHESPV1207 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439996/PHESPV1207.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439996/PHESPV1207.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439996 PHESPV1207 ERR1440003 PHESPV1214 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440003 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440003 62aa24ff38a18c09966e698dffe98ccb;8304f388cb938ea91cd3ca37a17c186a 1313 110253142 8f5e3ff5471b1de7e7198d31601ec056;96f39fcf6d2c85946c3fdbf8210997c7 SAMEA4024272 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440003/ERR1440003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440003/ERR1440003_2.fastq.gz 1258691 WGS PHESPV1214 RANDOM 73099371;76301927 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8270a2c41a78497c51dd0ea6ac31942a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440003/ERR1440003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440003/ERR1440003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440003/PHESPV1214.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440003/PHESPV1214.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440003/ERR1440003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440003/ERR1440003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440003/PHESPV1214.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440003/PHESPV1214.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77347837;80485681 ERS1195382 ERX1510381 GENOMIC 249947734 2016-06-10 PHESPV1214 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440003/PHESPV1214.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440003/PHESPV1214.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440003 PHESPV1214 ERR1440016 PHESPV1227 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440016 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440016 8f4752c71c066a3d88c731d1f62c7bb6;226918bab684edf8047c7233edc67efc 1313 127355756 c9c8bbf2e7f16d607edb8e5cc3d5a899;032e7c69bef8aa5231386f82762d6215 SAMEA4024285 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440016/ERR1440016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440016/ERR1440016_2.fastq.gz 1469342 WGS PHESPV1227 RANDOM 84639948;87940804 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8a8c47c6935b7ea1f85be7c42df899e3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440016/ERR1440016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440016/ERR1440016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440016/PHESPV1227.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440016/PHESPV1227.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440016/ERR1440016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440016/ERR1440016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440016/PHESPV1227.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440016/PHESPV1227.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89489559;92733291 ERS1195395 ERX1510394 GENOMIC 291789867 2016-06-10 PHESPV1227 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440016/PHESPV1227.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440016/PHESPV1227.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440016 PHESPV1227 ERR1440021 PHESPV1232 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440021 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440021 166b75b25e90e1b7b7e8fff5d677436e;8bf1a56b4c49bb26c622b2af9d12ecab 1313 241845295 1a5e951d6279b2b97f33a2383764c698;dfbab4838a9b446eedc723726932a78e SAMEA4024290 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440021/ERR1440021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440021/ERR1440021_2.fastq.gz 2576560 WGS PHESPV1232 RANDOM 162246357;162175427 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7ae06c2bb8758649bc47952a1e179453 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440021/ERR1440021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440021/ERR1440021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440021/PHESPV1232.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440021/PHESPV1232.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440021/ERR1440021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440021/ERR1440021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440021/PHESPV1232.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440021/PHESPV1232.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 170275632;170189656 ERS1195400 ERX1510399 GENOMIC 510512188 2016-06-10 PHESPV1232 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440021/PHESPV1232.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440021/PHESPV1232.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440021 PHESPV1232 ERR1440022 PHESPV1233 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440022 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440022 2682abd645ee4ea040abcb2ac3cd382d;23314ad903ca85e4f429223a46e5bdf4 1313 94023072 e6232a37d64b5d99e8db1a8c010a6dc0;d814eeb4b29d3dcba44e310deb96c0f1 SAMEA4024291 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440022/ERR1440022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440022/ERR1440022_2.fastq.gz 1091267 WGS PHESPV1233 RANDOM 63363975;64274124 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a6b3a6578b49bcd5e126eef9f4c607c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440022/ERR1440022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440022/ERR1440022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440022/PHESPV1233.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440022/PHESPV1233.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440022/ERR1440022_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440022/ERR1440022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440022/PHESPV1233.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440022/PHESPV1233.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67125883;68026186 ERS1195401 ERX1510400 GENOMIC 216584923 2016-06-10 PHESPV1233 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440022/PHESPV1233.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440022/PHESPV1233.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440022 PHESPV1233 ERR1440037 PHESPV1248 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440037 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440037 8677e8cf776ddc52b761240c9d41423c;4758b8f0274f219ea74ab5717dfd0b9e 1313 120384974 d68b51ce34247a64e45ce58e0f60c708;263928243c6c8a4e380760fa9c28fea0 SAMEA4024306 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440037/ERR1440037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440037/ERR1440037_2.fastq.gz 1324490 WGS PHESPV1248 RANDOM 80901641;82134263 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c92633956a51c12747965f1108fedf70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440037/ERR1440037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440037/ERR1440037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440037/PHESPV1248.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440037/PHESPV1248.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440037/ERR1440037_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440037/ERR1440037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440037/PHESPV1248.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440037/PHESPV1248.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85371299;86572101 ERS1195416 ERX1510415 GENOMIC 262588344 2016-06-10 PHESPV1248 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440037/PHESPV1248.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440037/PHESPV1248.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440037 PHESPV1248 ERR1440025 PHESPV1236 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440025 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440025 37005fcfd036993f936a30c8a3c67048;174113a123148f32d419c6c6ae910983 1313 115201979 e3612a9803766171ed1edc2078a1020a;da18d356e7e59d8000fe044d90d77cd7 SAMEA4024294 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440025/ERR1440025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440025/ERR1440025_2.fastq.gz 1252741 WGS PHESPV1236 RANDOM 75521279;79792686 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c0026389981f6e14894d94d907a3989 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440025/ERR1440025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440025/ERR1440025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440025/PHESPV1236.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440025/PHESPV1236.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440025/ERR1440025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440025/ERR1440025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440025/PHESPV1236.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440025/PHESPV1236.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79777179;83971034 ERS1195404 ERX1510403 GENOMIC 247535583 2016-06-10 PHESPV1236 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440025/PHESPV1236.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440025/PHESPV1236.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440025 PHESPV1236 ERR1440041 PHESPV1252 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440041 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440041 4bbb9ccad71a5628b3e34bf6cec377c1;78440eb95553cf3c11d1e2a8a130f6f2 1313 58034850 76bf56e2d714095a8ce9372023868e69;907eb84347b16bb6de076995ebbd4871 SAMEA4024310 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440041/ERR1440041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440041/ERR1440041_2.fastq.gz 676040 WGS PHESPV1252 RANDOM 38467914;40339194 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 12fdcce9123947973ca18167893aa933 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440041/ERR1440041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440041/ERR1440041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440041/PHESPV1252.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440041/PHESPV1252.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440041/ERR1440041_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440041/ERR1440041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440041/PHESPV1252.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440041/PHESPV1252.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 40936948;42738802 ERS1195420 ERX1510419 GENOMIC 134039211 2016-06-10 PHESPV1252 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440041/PHESPV1252.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440041/PHESPV1252.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440041 PHESPV1252 ERR1440043 PHESPV1254 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440043 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440043 160c9ff6ca162719d9004a81b2021fff;36567393e1262c6c68154de000e8f15a 1313 220331770 2bf21792987b419522678e5dd09bfc9a;af6ddccdccc04960c0725ca36f8c13fd SAMEA4024312 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440043/ERR1440043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440043/ERR1440043_2.fastq.gz 2445194 WGS PHESPV1254 RANDOM 148228253;150349306 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2df838074731817cfa40cfc1de74955b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440043/ERR1440043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440043/ERR1440043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440043/PHESPV1254.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440043/PHESPV1254.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440043/ERR1440043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440043/ERR1440043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440043/PHESPV1254.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440043/PHESPV1254.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 155843063;157931109 ERS1195422 ERX1510421 GENOMIC 484970628 2016-06-10 PHESPV1254 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440043/PHESPV1254.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440043/PHESPV1254.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440043 PHESPV1254 ERR1440044 PHESPV1255 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440044 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440044 59789bd8cf6283ea653efbccbb9264ad;5cd956cbd6253aea58222d1c4dca87c5 1313 119049271 78e2d4ddfa6f1d20e1fe99e5b4d73c11;fea3577f62a933d1e37a21977392d352 SAMEA4024313 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440044/ERR1440044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440044/ERR1440044_2.fastq.gz 1313998 WGS PHESPV1255 RANDOM 79826210;81406034 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5cdd3c3745c8b50afe22822ecc2b25ab ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440044/ERR1440044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440044/ERR1440044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440044/PHESPV1255.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440044/PHESPV1255.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440044/ERR1440044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440044/ERR1440044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440044/PHESPV1255.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440044/PHESPV1255.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84253919;85794533 ERS1195423 ERX1510422 GENOMIC 260294427 2016-06-10 PHESPV1255 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440044/PHESPV1255.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440044/PHESPV1255.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440044 PHESPV1255 ERR1440065 PHESPV1276 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440065 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440065 bd9b7c09fbb2cb24e579e932d1b7a5f8;c61a44589516daed433621f04d9ad9a9 1313 135666574 f9c2611bffb63912a56863203611934d;3f735a9d3fcefe4868a4fc307732dadd SAMEA4024334 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440065/ERR1440065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440065/ERR1440065_2.fastq.gz 1564399 WGS PHESPV1276 RANDOM 89996223;93738897 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1aabcbec432d54fba502b74fc7758eb9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440065/ERR1440065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440065/ERR1440065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440065/PHESPV1276.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440065/PHESPV1276.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440065/ERR1440065_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440065/ERR1440065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440065/PHESPV1276.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440065/PHESPV1276.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95149420;98852358 ERS1195444 ERX1510443 GENOMIC 310720794 2016-06-10 PHESPV1276 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440065/PHESPV1276.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440065/PHESPV1276.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440065 PHESPV1276 ERR1440057 PHESPV1268 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440057 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440057 f8912a5ade7bddf5a45a8e40d354f76d;36e438c500a5263949d22ec052efcaf3 1313 67165641 d94a128a6645953a2a02d6aeeb3d9790;e1b4693ac6f18fee20c685f90396a0bc SAMEA4024326 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440057/ERR1440057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440057/ERR1440057_2.fastq.gz 767277 WGS PHESPV1268 RANDOM 43665557;47029773 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 58377add1b7738a3c6f48bd6af2b4f8e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440057/ERR1440057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440057/ERR1440057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440057/PHESPV1268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440057/PHESPV1268.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440057/ERR1440057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440057/ERR1440057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440057/PHESPV1268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440057/PHESPV1268.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 46419890;49687043 ERS1195436 ERX1510435 GENOMIC 151867620 2016-06-10 PHESPV1268 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440057/PHESPV1268.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440057/PHESPV1268.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440057 PHESPV1268 ERR1440067 PHESPV1278 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440067 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440067 3a2bc8a83c70aca4152438403ef71f0c;dc3c1554cf7f2dcde991bb04d9028081 1313 126502849 fc6332000573ff81ae2373ebe18a9293;10bf9ad116b8e5e677cc645da2731714 SAMEA4024336 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440067/ERR1440067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440067/ERR1440067_2.fastq.gz 1451090 WGS PHESPV1278 RANDOM 83972016;87237393 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9931b35962cd88c568435229c01f168 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440067/ERR1440067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440067/ERR1440067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440067/PHESPV1278.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440067/PHESPV1278.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440067/ERR1440067_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440067/ERR1440067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440067/PHESPV1278.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440067/PHESPV1278.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88773776;91998484 ERS1195446 ERX1510445 GENOMIC 288173767 2016-06-10 PHESPV1278 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440067/PHESPV1278.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440067/PHESPV1278.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440067 PHESPV1278 ERR1440089 PHESPV1300 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440089 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440089 aa96c2be520d546f51ce2670da46ebcc;205ba5aaf5ea0380f0e9b0910cf81158 1313 126524345 362f03209c75424cb24058b02dc4f72d;d16b54cdf3d1ff0632b581fe340a0ba6 SAMEA4024358 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440089/ERR1440089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440089/ERR1440089_2.fastq.gz 1455441 WGS PHESPV1300 RANDOM 83781967;87513828 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1747d03257f5d17a657909966ea1f16c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440089/ERR1440089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440089/ERR1440089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440089/PHESPV1300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440089/PHESPV1300.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440089/ERR1440089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440089/ERR1440089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440089/PHESPV1300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440089/PHESPV1300.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88603940;92287553 ERS1195468 ERX1510467 GENOMIC 289039887 2016-06-10 PHESPV1300 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440089/PHESPV1300.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440089/PHESPV1300.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440089 PHESPV1300 ERR1440083 PHESPV1294 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440083 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440083 6e9b63154cd3a81d9eda921ca8867be4;663888948a11da8d6a58d82d60050fba 1313 111645058 596297b29e0e5855fd7460f7c8682d46;f61311ba0b01b5b286b3cebd2527050e SAMEA4024352 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440083/ERR1440083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440083/ERR1440083_2.fastq.gz 1276259 WGS PHESPV1294 RANDOM 74392250;76742627 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a8767bafb3afe6565a3c597aba28b451 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440083/ERR1440083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440083/ERR1440083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440083/PHESPV1294.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440083/PHESPV1294.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440083/ERR1440083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440083/ERR1440083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440083/PHESPV1294.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440083/PHESPV1294.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78685031;81012291 ERS1195462 ERX1510461 GENOMIC 253512394 2016-06-10 PHESPV1294 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440083/PHESPV1294.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440083/PHESPV1294.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440083 PHESPV1294 ERR1440086 PHESPV1297 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440086 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440086 d4011a59abd376c9fe718510b04acc30;86fe4dc94b7364ce1643775da0572527 1313 81471440 cff4bc4114471d285b0feb11062cfa36;c5f2c25093da6124a3a1b496dcc66580 SAMEA4024355 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440086/ERR1440086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440086/ERR1440086_2.fastq.gz 948724 WGS PHESPV1297 RANDOM 53913125;56173026 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c842ceaf676f2f4faa9d56fc3ef70c8e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440086/ERR1440086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440086/ERR1440086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440086/PHESPV1297.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440086/PHESPV1297.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440086/ERR1440086_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440086/ERR1440086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440086/PHESPV1297.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440086/PHESPV1297.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57221345;59394579 ERS1195465 ERX1510464 GENOMIC 188046623 2016-06-10 PHESPV1297 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440086/PHESPV1297.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440086/PHESPV1297.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440086 PHESPV1297 ERR1440094 PHESPV1305 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440094 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440094 f3049626db3e9dab9688d8dde4f5d572;a86b4e35d3ea31dc31427657e6bd9510 1313 121789260 3c4061644f044515704371cb02583c04;19b601cbc5bc014074414e42d0dce9ba SAMEA4024363 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440094/ERR1440094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440094/ERR1440094_2.fastq.gz 1378577 WGS PHESPV1305 RANDOM 81061732;83857246 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d85e9b546f295d81680b01f56a73268c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440094/ERR1440094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440094/ERR1440094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440094/PHESPV1305.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440094/PHESPV1305.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440094/ERR1440094_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440094/ERR1440094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440094/PHESPV1305.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440094/PHESPV1305.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85715100;88411051 ERS1195473 ERX1510472 GENOMIC 273691875 2016-06-10 PHESPV1305 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440094/PHESPV1305.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440094/PHESPV1305.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440094 PHESPV1305 ERR1440099 PHESPV1310 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440099 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440099 a37f066e1698d7a969bd5c9de9a17f6f;bf44e87dd2653149761cbdd41cae5eb9 1313 69388579 d61c5192c0c0c2f8de62194d02de52d6;ffe4309108938d505989ce3a969067e5 SAMEA4024368 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440099/ERR1440099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440099/ERR1440099_2.fastq.gz 766389 WGS PHESPV1310 RANDOM 45471304;47881594 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8653e1a1e7cca756351767b669352cf8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440099/ERR1440099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440099/ERR1440099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440099/PHESPV1310.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440099/PHESPV1310.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440099/ERR1440099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440099/ERR1440099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440099/PHESPV1310.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440099/PHESPV1310.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48237426;50568869 ERS1195478 ERX1510477 GENOMIC 151833114 2016-06-10 PHESPV1310 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440099/PHESPV1310.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440099/PHESPV1310.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440099 PHESPV1310 ERR1440100 PHESPV1311 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440100 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440100 5267919c16ce56d2b39dc3aa154754a7;7a48ac0fa1e99e7c2b19c656f2ffc8c5 1313 90146901 42b67ca52ea727120aa8a18dde8e7971;610b425f68179cedfa99fdb849902353 SAMEA4024369 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440100/ERR1440100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440100/ERR1440100_2.fastq.gz 1012368 WGS PHESPV1311 RANDOM 59847412;61779654 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 826088a7fd818117024da9ae098ea7b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440100/ERR1440100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440100/ERR1440100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440100/PHESPV1311.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440100/PHESPV1311.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440100/ERR1440100_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440100/ERR1440100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440100/PHESPV1311.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440100/PHESPV1311.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63378250;65222829 ERS1195479 ERX1510478 GENOMIC 200824793 2016-06-10 PHESPV1311 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440100/PHESPV1311.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440100/PHESPV1311.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440100 PHESPV1311 ERR1440119 PHESPV1330 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440119 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440119 34e6f034357307d895627d6059c77654;ae6c4b507a9a1f60cc64b0cbc29f6950 1313 225359413 7f4ca67f591dd56dd24e195c13bcdfac;fa033238736c64c944861ded41f0d087 SAMEA4024388 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440119/ERR1440119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440119/ERR1440119_2.fastq.gz 2543384 WGS PHESPV1330 RANDOM 149799046;155811238 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a4d7c4e30259794a0211302e9881b9c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440119/ERR1440119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440119/ERR1440119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440119/PHESPV1330.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440119/PHESPV1330.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440119/ERR1440119_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440119/ERR1440119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440119/PHESPV1330.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440119/PHESPV1330.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 157726507;163592598 ERS1195498 ERX1510497 GENOMIC 504971324 2016-06-10 PHESPV1330 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440119/PHESPV1330.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440119/PHESPV1330.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440119 PHESPV1330 ERR1440131 PHESPV1343 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440131 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440131 741aeba2ac4cac9efd95d26227cb4c3d;e9dc2eaa81a1606247441cae19557137 1313 138194655 c8b8da0e19f5ed99fce07c4a35d6a17f;675bb08e44efc8feb750f4ef827e7ac9 SAMEA4024400 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440131/ERR1440131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440131/ERR1440131_2.fastq.gz 1554530 WGS PHESPV1343 RANDOM 91843296;95318489 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 64b534e6596a35764ceabbeef84364b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440131/ERR1440131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440131/ERR1440131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440131/PHESPV1343.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440131/PHESPV1343.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440131/ERR1440131_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440131/ERR1440131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440131/PHESPV1343.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440131/PHESPV1343.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97032261;100411166 ERS1195510 ERX1510509 GENOMIC 308672044 2016-06-10 PHESPV1343 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440131/PHESPV1343.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440131/PHESPV1343.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440131 PHESPV1343 ERR1440139 PHESPV1352 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440139 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440139 2801dc5cafe91b3d1089e6478536825e;f7205cfe7a0a50575092228786c9d75d 1313 114875442 f01579f7d1d70c660c017874bc94ce7f;2c5c3ee7453e78858131787d040f9863 SAMEA4024408 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440139/ERR1440139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440139/ERR1440139_2.fastq.gz 1297494 WGS PHESPV1352 RANDOM 76519810;79192387 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c82330bacb6c52c23260442845b1c792 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440139/ERR1440139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440139/ERR1440139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440139/PHESPV1352.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440139/PHESPV1352.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440139/ERR1440139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440139/ERR1440139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440139/PHESPV1352.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440139/PHESPV1352.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80961890;83542631 ERS1195518 ERX1510517 GENOMIC 257636432 2016-06-10 PHESPV1352 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440139/PHESPV1352.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440139/PHESPV1352.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440139 PHESPV1352 ERR1440160 PHESPV1373 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440160 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440160 9938d2643da005727562c60c8056e3ec;c33bb76a6e133fd755ed2b7eddd2aa55 1313 127801578 cc4bc295ece5b199f3ff1c49bee01142;894bb974a493e23b14de856883571346 SAMEA4024429 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440160/ERR1440160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440160/ERR1440160_2.fastq.gz 1458110 WGS PHESPV1373 RANDOM 84885219;88502925 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d773c635f88483518342b5ab1b742ea1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440160/ERR1440160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440160/ERR1440160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440160/PHESPV1373.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440160/PHESPV1373.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440160/ERR1440160_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440160/ERR1440160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440160/PHESPV1373.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440160/PHESPV1373.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89796415;93302466 ERS1195539 ERX1510538 GENOMIC 289586540 2016-06-10 PHESPV1373 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440160/PHESPV1373.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440160/PHESPV1373.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440160 PHESPV1373 ERR1440142 PHESPV1355 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440142 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440142 dc8506bdd98625f7d4777f3e3c6a3bd0;228b58978a5b41cc6309f978bb7ffd28 1313 119443929 7fa1539702ddb80d2b348c07378f4483;282b7e914f09ac705444c075ee89fee6 SAMEA4024411 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440142/ERR1440142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440142/ERR1440142_2.fastq.gz 1366019 WGS PHESPV1355 RANDOM 79395325;82719593 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 91c81d48262987fa571cfd42ac712ae3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440142/ERR1440142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440142/ERR1440142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440142/PHESPV1355.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440142/PHESPV1355.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440142/ERR1440142_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440142/ERR1440142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440142/PHESPV1355.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440142/PHESPV1355.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84033082;87251299 ERS1195521 ERX1510520 GENOMIC 271343207 2016-06-10 PHESPV1355 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440142/PHESPV1355.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440142/PHESPV1355.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440142 PHESPV1355 ERR1440162 PHESPV1375 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440162 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440162 b558287d54783a9c38032939643834cd;20b224360cc7f6dd24f28b01becdf7f2 1313 90423052 fbadfc39f3c4488d14cfe8906ef69305;a304a0c10a8b14e2eb89007efdb9084b SAMEA4024431 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440162/ERR1440162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440162/ERR1440162_2.fastq.gz 1026208 WGS PHESPV1375 RANDOM 60010444;62718177 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8131643d636518cc11c51403a25be02b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440162/ERR1440162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440162/ERR1440162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440162/PHESPV1375.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440162/PHESPV1375.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440162/ERR1440162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440162/ERR1440162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440162/PHESPV1375.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440162/PHESPV1375.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63605600;66222710 ERS1195541 ERX1510540 GENOMIC 203789457 2016-06-10 PHESPV1375 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440162/PHESPV1375.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440162/PHESPV1375.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440162 PHESPV1375 ERR1440164 PHESPV1377 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440164 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440164 1066510d0639f2ece740d99a6653baf6;16937f27f8b3595668161d4a1afe5e16 1313 137386346 deaf28029cfc04fce81d2a4095fed116;f4fad0091f5e51646f4eb77b88842d07 SAMEA4024433 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440164/ERR1440164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440164/ERR1440164_2.fastq.gz 1524757 WGS PHESPV1377 RANDOM 90250027;94944945 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2bb2c3eb32c52bd1e102d010ac70d5ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440164/ERR1440164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440164/ERR1440164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440164/PHESPV1377.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440164/PHESPV1377.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440164/ERR1440164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440164/ERR1440164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440164/PHESPV1377.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440164/PHESPV1377.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95353671;99930234 ERS1195543 ERX1510542 GENOMIC 302247077 2016-06-10 PHESPV1377 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440164/PHESPV1377.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440164/PHESPV1377.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440164 PHESPV1377 ERR1440171 PHESPV1384 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440171 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440171 3964bd93b7967bda5cbd2045d2eb8769;b5c3472f8cbdd239651c2067d9a1d8a0 1313 128999919 ed9897efeaca40c476e324b47130e0f0;16d209cfd3d6458f4ad8f49a3667ce62 SAMEA4024440 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440171/ERR1440171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440171/ERR1440171_2.fastq.gz 1459589 WGS PHESPV1384 RANDOM 85879602;88805583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 47979d0486dcde1fe849b4e0f0f25477 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440171/ERR1440171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440171/ERR1440171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440171/PHESPV1384.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440171/PHESPV1384.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440171/ERR1440171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440171/ERR1440171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440171/PHESPV1384.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440171/PHESPV1384.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90787449;93610477 ERS1195550 ERX1510549 GENOMIC 289775302 2016-06-10 PHESPV1384 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440171/PHESPV1384.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440171/PHESPV1384.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440171 PHESPV1384 ERR1440180 PHESPV1393 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440180 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440180 fe2e30e0f0642c76e6975547a126bc9f;ef33f0cf0300004118f085a87416dad1 1313 112649342 aa9b1039b7308a57842f7375e022a116;6708eef13a47ef2dbfd337cd37ef4c72 SAMEA4024449 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440180/ERR1440180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440180/ERR1440180_2.fastq.gz 1175538 WGS PHESPV1393 RANDOM 74534140;76185323 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a3fd5a6764470fd80a4e9d00c8d88d56 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440180/ERR1440180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440180/ERR1440180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440180/PHESPV1393.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440180/PHESPV1393.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440180/ERR1440180_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440180/ERR1440180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440180/PHESPV1393.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440180/PHESPV1393.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78556089;80156031 ERS1195559 ERX1510558 GENOMIC 231763000 2016-06-10 PHESPV1393 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440180/PHESPV1393.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440180/PHESPV1393.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440180 PHESPV1393 ERR1440181 PHESPV1394 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440181 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440181 375876f245a9bf3bac31051bcbe7d69e;03d16f7af610d56f73b677b0fa3f2a7c 1313 139145907 9d74d6dc401bc04968e4541cdf6b8e8c;597373119f33319d9b0a52dcbb269471 SAMEA4024450 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440181/ERR1440181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440181/ERR1440181_2.fastq.gz 1440291 WGS PHESPV1394 RANDOM 90550744;95001875 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ae762abbf7276912eb16e5896339f8cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440181/ERR1440181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440181/ERR1440181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440181/PHESPV1394.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440181/PHESPV1394.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440181/ERR1440181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440181/ERR1440181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440181/PHESPV1394.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440181/PHESPV1394.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95337448;99684300 ERS1195560 ERX1510559 GENOMIC 282995913 2016-06-10 PHESPV1394 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440181/PHESPV1394.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440181/PHESPV1394.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440181 PHESPV1394 ERR1440188 PHESPV1402 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440188 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440188 3c49635fe04ce6e3849d43d81f53c850;10d0494881130baddc037b849b6f4aa6 1313 155274062 7aa4ee073599a9b5e5f2074a6b05b0b5;e9c37a5eac6cb491e36f7b523ac4c7d2 SAMEA4024457 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440188/ERR1440188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440188/ERR1440188_2.fastq.gz 1616397 WGS PHESPV1402 RANDOM 102512993;105170795 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e09dfd004c45f8583153302fce61f51f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440188/ERR1440188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440188/ERR1440188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440188/PHESPV1402.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440188/PHESPV1402.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440188/ERR1440188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440188/ERR1440188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440188/PHESPV1402.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440188/PHESPV1402.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107855552;110431384 ERS1195567 ERX1510566 GENOMIC 318424940 2016-06-10 PHESPV1402 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440188/PHESPV1402.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440188/PHESPV1402.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440188 PHESPV1402 ERR1440241 PHESPV1455 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440241 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440241 0d50848689ae3fa4533355b9057bfcd8;97d4b22f977348540cd5ecfff006ff30 1313 170066561 bd95ecb0ae270cad5f525d43051df9e3;555d2cf7f1b2ab63063fbdbe028a6653 SAMEA4024510 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440241/ERR1440241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440241/ERR1440241_2.fastq.gz 2018893 WGS PHESPV1455 RANDOM 111960986;120230627 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c86c5f3ec3fb0fb66918a9c1d9cf51a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440241/ERR1440241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440241/ERR1440241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440241/PHESPV1455.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440241/PHESPV1455.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440241/ERR1440241_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440241/ERR1440241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440241/PHESPV1455.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440241/PHESPV1455.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118411152;126581216 ERS1195620 ERX1510619 GENOMIC 400435065 2016-06-10 PHESPV1455 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440241/PHESPV1455.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440241/PHESPV1455.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440241 PHESPV1455 ERR1440199 PHESPV1413 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440199 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440199 55865f784b421e997340f288a932eab0;04545aada8e6a9a6442ec2b8d75be1c7 1313 139653739 ef0b1a6afc8a7a54f2f65e2d52f6ec41;3c909e0679595f23feba4200470c0637 SAMEA4024468 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440199/ERR1440199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440199/ERR1440199_2.fastq.gz 1609961 WGS PHESPV1413 RANDOM 92665582;96300274 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6a9262a680f9745d1a69e8ecaa065213 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440199/ERR1440199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440199/ERR1440199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440199/PHESPV1413.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440199/PHESPV1413.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440199/ERR1440199_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440199/ERR1440199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440199/PHESPV1413.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440199/PHESPV1413.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97926371;101509441 ERS1195578 ERX1510577 GENOMIC 319065450 2016-06-10 PHESPV1413 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440199/PHESPV1413.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440199/PHESPV1413.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440199 PHESPV1413 ERR1440242 PHESPV1456 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440242 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440242 1c3990752f8154d2292206ea1f773b9c;f9d4db6863b7f9a66429129c9ee2ea47 1313 163125571 d37767f11fdc4d6c1b691e50bf847e84;a2c8bce8ca286397ea30fce7b7fad918 SAMEA4024511 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440242/ERR1440242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440242/ERR1440242_2.fastq.gz 1926526 WGS PHESPV1456 RANDOM 107194479;115493239 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c0ecc0abf9a794830af2d50918e97cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440242/ERR1440242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440242/ERR1440242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440242/PHESPV1456.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440242/PHESPV1456.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440242/ERR1440242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440242/ERR1440242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440242/PHESPV1456.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440242/PHESPV1456.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113400151;121599471 ERS1195621 ERX1510620 GENOMIC 382018643 2016-06-10 PHESPV1456 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440242/PHESPV1456.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440242/PHESPV1456.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440242 PHESPV1456 ERR1440264 PHESPV1479 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440264 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440264 7de201c016a69b2dedff44307f5957ac;3634b306a65ed78ec5a7f69cb1bcca67 1313 136058179 89d51b86aba1827328bd6ac169d39c3f;033678efef21ef7fff5d4e4f42699a8c SAMEA4024533 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440264/ERR1440264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440264/ERR1440264_2.fastq.gz 1640945 WGS PHESPV1479 RANDOM 92178455;94719389 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5915dad9a875b2ca0dbfffd9ac185eca ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440264/ERR1440264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440264/ERR1440264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440264/PHESPV1479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440264/PHESPV1479.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440264/ERR1440264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440264/ERR1440264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440264/PHESPV1479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440264/PHESPV1479.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97561935;100099234 ERS1195643 ERX1510642 GENOMIC 326081224 2016-06-10 PHESPV1479 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440264/PHESPV1479.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440264/PHESPV1479.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440264 PHESPV1479 ERR1440267 PHESPV1482 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440267 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440267 f608c14c876df7b402f5b1bc0245efa6;c22f570803faefea98b6f621a49989b8 1313 144905713 c53cb318cf7d28a67cc88b9914315ae1;73a71eba501e258f7c038edb4a766055 SAMEA4024536 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440267/ERR1440267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440267/ERR1440267_2.fastq.gz 1735733 WGS PHESPV1482 RANDOM 97279465;101428379 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 88de4dc93a4f823a07a8b1471e627e10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440267/ERR1440267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440267/ERR1440267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440267/PHESPV1482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440267/PHESPV1482.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440267/ERR1440267_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440267/ERR1440267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440267/PHESPV1482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440267/PHESPV1482.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102895562;107035146 ERS1195646 ERX1510645 GENOMIC 344683681 2016-06-10 PHESPV1482 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440267/PHESPV1482.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440267/PHESPV1482.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440267 PHESPV1482 ERR1440272 PHESPV1487 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440272 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440272 ede76e8069c67c83f6f244111f7d1549;eae949e921f30a47b1620dff4499467b 1313 166005412 c501be4d36cf46fc3b974a9037f5d00f;82cb25aa3f2e609088d81649662ef152 SAMEA4024541 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440272/ERR1440272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440272/ERR1440272_2.fastq.gz 1988532 WGS PHESPV1487 RANDOM 111811487;115887299 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e0a14ff14b31222c163e6ab9b8ab8f48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440272/ERR1440272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440272/ERR1440272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440272/PHESPV1487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440272/PHESPV1487.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440272/ERR1440272_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440272/ERR1440272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440272/PHESPV1487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440272/PHESPV1487.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118183314;122250334 ERS1195651 ERX1510650 GENOMIC 394956374 2016-06-10 PHESPV1487 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440272/PHESPV1487.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440272/PHESPV1487.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440272 PHESPV1487 ERR1440269 PHESPV1484 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440269 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440269 010c4fe16b7aab788fb4edf73478cdd6;9d5dc0e1700ee40a54f2b4b641bf2a41 1313 195648299 76a95243f80cf1ecd7ed3444fe2cc4b6;6452d0695cc786133e84cc8cfb000426 SAMEA4024538 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440269/ERR1440269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440269/ERR1440269_2.fastq.gz 2357257 WGS PHESPV1484 RANDOM 131732496;136307037 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aa0c856e66530f827431572e9494b4c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440269/ERR1440269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440269/ERR1440269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440269/PHESPV1484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440269/PHESPV1484.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440269/ERR1440269_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440269/ERR1440269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440269/PHESPV1484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440269/PHESPV1484.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 139077694;143639565 ERS1195648 ERX1510647 GENOMIC 468247333 2016-06-10 PHESPV1484 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440269/PHESPV1484.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440269/PHESPV1484.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440269 PHESPV1484 ERR1440273 PHESPV1488 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440273 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440273 252e9c08565481c2b6f6c35c00f3283e;62c083b350d0c83f8b33d919e29d6292 1313 156923311 6d23149ee56cdb90ebb17685c2b61303;583498965fd4f93f240d6476e3b70a11 SAMEA4024542 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440273/ERR1440273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440273/ERR1440273_2.fastq.gz 1883570 WGS PHESPV1488 RANDOM 105410908;109949642 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 89b4f6ba6b4e7f3522ff10f25d6c7dc1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440273/ERR1440273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440273/ERR1440273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440273/PHESPV1488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440273/PHESPV1488.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440273/ERR1440273_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440273/ERR1440273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440273/PHESPV1488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440273/PHESPV1488.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111488385;116006445 ERS1195652 ERX1510651 GENOMIC 374105393 2016-06-10 PHESPV1488 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440273/PHESPV1488.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440273/PHESPV1488.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440273 PHESPV1488 ERR1440289 PHESPV1504 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440289 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440289 d547cbc4bee2b6da3bc26af6526adbdc;4fd0f83eef33d74e63ddc46a4dddfc64 1313 136234091 b7d7881041d0439e4014294afc7057d4;ec7423c9a067d203df352c519192fb37 SAMEA4024558 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440289/ERR1440289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440289/ERR1440289_2.fastq.gz 1625658 WGS PHESPV1504 RANDOM 90435841;95724588 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a932ae2a10d42c6285edca78454636ae ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440289/ERR1440289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440289/ERR1440289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440289/PHESPV1504.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440289/PHESPV1504.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440289/ERR1440289_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440289/ERR1440289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440289/PHESPV1504.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440289/PHESPV1504.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95738720;101003285 ERS1195668 ERX1510667 GENOMIC 322595511 2016-06-10 PHESPV1504 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440289/PHESPV1504.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440289/PHESPV1504.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440289 PHESPV1504 ERR1440290 PHESPV1505 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440290 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440290 4b42f11b2381206186362905a3e6c464;1adfbec8069a066965ee2f43415705dc 1313 176121518 ff9254345703482ae40463be3d6ad2de;07477cab6f72512a1a1c047487f623a8 SAMEA4024559 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440290/ERR1440290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440290/ERR1440290_2.fastq.gz 2125882 WGS PHESPV1505 RANDOM 119740926;121937350 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c4d2b35417191c3f8882dc669b0cf11c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440290/ERR1440290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440290/ERR1440290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440290/PHESPV1505.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440290/PHESPV1505.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440290/ERR1440290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440290/ERR1440290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440290/PHESPV1505.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440290/PHESPV1505.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126438693;128637415 ERS1195669 ERX1510668 GENOMIC 422485929 2016-06-10 PHESPV1505 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440290/PHESPV1505.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440290/PHESPV1505.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440290 PHESPV1505 ERR1440291 PHESPV1506 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440291 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440291 fa7e29b0fc22e55b49a263dfd8a99644;d068da7f55b71cef1928105ad06effd9 1313 174574777 bf4e37c6d84484b4a2648216b03bdfda;756107059b9d07e5be94cafd6b29b4b7 SAMEA4024560 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440291/ERR1440291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440291/ERR1440291_2.fastq.gz 2115133 WGS PHESPV1506 RANDOM 118555049;121169077 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a41b705b32740997c3e934abe8a3b08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440291/ERR1440291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440291/ERR1440291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440291/PHESPV1506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440291/PHESPV1506.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440291/ERR1440291_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440291/ERR1440291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440291/PHESPV1506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440291/PHESPV1506.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125211218;127831979 ERS1195670 ERX1510669 GENOMIC 420363434 2016-06-10 PHESPV1506 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440291/PHESPV1506.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440291/PHESPV1506.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440291 PHESPV1506 ERR1440545 PHESPV1760 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440545 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440545 8cf4cd4e8bdf688cf1ce5c2bea09a611;07edab03126573553a003b10bd8719c3 1313 118001117 bc2fc663b0a40beccc78f2d6831f4ca9;277d82ecbeed66d6bff2eef4a969a3ca SAMEA4024814 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440545/ERR1440545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440545/ERR1440545_2.fastq.gz 1315369 WGS PHESPV1760 RANDOM 85083761;85708402 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d36f354cb04b3b1edf3ede94e958f69a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440545/ERR1440545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440545/ERR1440545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440545/PHESPV1760.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440545/PHESPV1760.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440545/ERR1440545_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440545/ERR1440545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440545/PHESPV1760.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440545/PHESPV1760.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81774777;82408479 ERS1195924 ERX1510923 GENOMIC 255054982 2016-06-10 PHESPV1760 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440545/PHESPV1760.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440545/PHESPV1760.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440545 PHESPV1760 ERR1439202 PHESPV0413 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439202 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439202 622d260f8955f083a32ea2721a7f430c;1f4007277f06574b22781a4146de2e53 1313 109720036 0d6f8b195ab8cc2351f1735ba2879b66;ec0326ec7e6259d60c72ae9f534db021 SAMEA4023471 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439202/ERR1439202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439202/ERR1439202_2.fastq.gz 1202689 WGS PHESPV0413 RANDOM 79640028;78948892 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5682eb6f1cfb37c2baa0d4d13b1d5280 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439202/ERR1439202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439202/ERR1439202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439202/PHESPV0413.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439202/PHESPV0413.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439202/ERR1439202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439202/ERR1439202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439202/PHESPV0413.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439202/PHESPV0413.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76616361;75939893 ERS1194581 ERX1509580 GENOMIC 233817221 2016-06-10 PHESPV0413 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439202/PHESPV0413.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439202/PHESPV0413.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439202 PHESPV0413 ERR1439544 PHESPV0755 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439544 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439544 25f8c6d3dae2f5d5d0a16da3b2d141cb;200ff71270b0c0b73e7e843edbe4428a 1313 182038535 531f9a93991caa821c848691b053236a;1b5eaec460233b8f8980b20b2ad1cd9a SAMEA4023813 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439544/ERR1439544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439544/ERR1439544_2.fastq.gz 2029094 WGS PHESPV0755 RANDOM 119366586;122561750 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5cd762003c5d8259bc48ebd60a64fd90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439544/ERR1439544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439544/ERR1439544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439544/PHESPV0755.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439544/PHESPV0755.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439544/ERR1439544_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439544/ERR1439544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439544/PHESPV0755.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439544/PHESPV0755.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125780758;128945028 ERS1194923 ERX1509922 GENOMIC 400943310 2016-06-10 PHESPV0755 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439544/PHESPV0755.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439544/PHESPV0755.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439544 PHESPV0755 ERR1439416 PHESPV0627 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439416 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439416 544014865811b8ca2efaa854dc0c2c43;a5fd903da5c8d88f7a0962eaa4805655 1313 108107484 3ba0e7f0081eebb366c15f2efc128b53;2c9df66546c17e454b685e8e708a111f SAMEA4023685 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439416/ERR1439416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439416/ERR1439416_2.fastq.gz 1181155 WGS PHESPV0627 RANDOM 77521134;78830753 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5d8bf1c221a373d84c2c07e4edbd1508 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439416/ERR1439416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439416/ERR1439416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439416/PHESPV0627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439416/PHESPV0627.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439416/ERR1439416_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439416/ERR1439416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439416/PHESPV0627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439416/PHESPV0627.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74559429;75880205 ERS1194795 ERX1509794 GENOMIC 231296884 2016-06-10 PHESPV0627 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439416/PHESPV0627.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439416/PHESPV0627.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439416 PHESPV0627 ERR1439385 PHESPV0596 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439385 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439385 f6081e0f266035a23208b9171939a487;f32ec96fd4e14f9079d193fc59bbd984 1313 101110497 56ffe9438b601f624cf615c106d30211;77d74fb58201ceb0e85eda41b1ee5bac SAMEA4023654 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439385/ERR1439385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439385/ERR1439385_2.fastq.gz 1119662 WGS PHESPV0596 RANDOM 73333945;73445473 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed95bbb9873dbacc5162b30088949549 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439385/ERR1439385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439385/ERR1439385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439385/PHESPV0596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439385/PHESPV0596.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439385/ERR1439385_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439385/ERR1439385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439385/PHESPV0596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439385/PHESPV0596.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70510012;70638814 ERS1194764 ERX1509763 GENOMIC 219601150 2016-06-10 PHESPV0596 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439385/PHESPV0596.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439385/PHESPV0596.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439385 PHESPV0596 ERR1439205 PHESPV0416 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439205 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439205 a1c734ce58356d37ad35a0a1686b027e;102c6dcaf93cce8b50d1e2b741b47f53 1313 108793498 f30d098fe5b35e807618580ebf55fe0e;f850074f8d102fe4d33e648ff74bc3fd SAMEA4023474 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439205/ERR1439205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439205/ERR1439205_2.fastq.gz 1181540 WGS PHESPV0416 RANDOM 78974247;78176276 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30ee344b306d396eec6c0ff86dcc52f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439205/ERR1439205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439205/ERR1439205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439205/PHESPV0416.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439205/PHESPV0416.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439205/ERR1439205_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439205/ERR1439205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439205/PHESPV0416.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439205/PHESPV0416.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76000655;75213936 ERS1194584 ERX1509583 GENOMIC 230999356 2016-06-10 PHESPV0416 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439205/PHESPV0416.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439205/PHESPV0416.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439205 PHESPV0416 ERR1439726 PHESPV0937 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439726 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439726 926820569f5d3fd599f3a425c0263176;3386290bf18a975a83bb1679e4ab9014 1313 204143487 5d4f0998e2756e9e89d815f6ce1810cd;f802153eabfe6002df92a42951b6d7d5 SAMEA4023995 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439726/ERR1439726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439726/ERR1439726_2.fastq.gz 2270704 WGS PHESPV0937 RANDOM 133582568;137594777 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd1c62c695c1e33886cf305df068e599 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439726/ERR1439726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439726/ERR1439726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439726/PHESPV0937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439726/PHESPV0937.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439726/ERR1439726_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439726/ERR1439726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439726/PHESPV0937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439726/PHESPV0937.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 140586402;144545839 ERS1195105 ERX1510104 GENOMIC 448416436 2016-06-10 PHESPV0937 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439726/PHESPV0937.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439726/PHESPV0937.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439726 PHESPV0937 ERR1439885 PHESPV1096 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439885 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439885 85436115a616d82c85517ea807d05c2e;5f0945de413ae36d6b66223e0648e360 1313 116850028 ad914c40177b6b928b440e7cf436fd91;9d4a346e12a62f312cbc3bd417835220 SAMEA4024154 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439885/ERR1439885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439885/ERR1439885_2.fastq.gz 1252394 WGS PHESPV1096 RANDOM 77054064;79923975 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 385240b5658c15102d991ea1effdac36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439885/ERR1439885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439885/ERR1439885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439885/PHESPV1096.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439885/PHESPV1096.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439885/ERR1439885_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439885/ERR1439885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439885/PHESPV1096.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439885/PHESPV1096.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81307427;84142569 ERS1195264 ERX1510263 GENOMIC 247283963 2016-06-10 PHESPV1096 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439885/PHESPV1096.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439885/PHESPV1096.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439885 PHESPV1096 ERR1440196 PHESPV1410 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440196 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440196 241754cc19780136960891c2f56b8ea4;b4d147e75e22473eb253177ab009a1d8 1313 115244073 2f16e8f05207be470b9ef4952de52307;e1c012304c038821518e7151aed1f139 SAMEA4024465 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440196/ERR1440196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440196/ERR1440196_2.fastq.gz 1299302 WGS PHESPV1410 RANDOM 76889387;79397013 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ded3610df9ce7ab5159cb6f8be863dd2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440196/ERR1440196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440196/ERR1440196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440196/PHESPV1410.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440196/PHESPV1410.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440196/ERR1440196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440196/ERR1440196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440196/PHESPV1410.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440196/PHESPV1410.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81264955;83742030 ERS1195575 ERX1510574 GENOMIC 257329378 2016-06-10 PHESPV1410 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440196/PHESPV1410.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440196/PHESPV1410.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440196 PHESPV1410 ERR1440366 PHESPV1581 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440366 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440366 c1f1d090253db4abf653b35e7daceeb4;59348a6ecda91d7c69db708b8f0abbfc 1313 143766940 e8c66db7b0016a760a5cfb024f9b04d4;e3c6989fc38d2c976bfdbcf7da3aca17 SAMEA4024635 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440366/ERR1440366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440366/ERR1440366_2.fastq.gz 1683114 WGS PHESPV1581 RANDOM 104413673;107820932 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1290af7dacc5ad5a8d03e64eca380c3e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440366/ERR1440366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440366/ERR1440366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440366/PHESPV1581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440366/PHESPV1581.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440366/ERR1440366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440366/ERR1440366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440366/PHESPV1581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440366/PHESPV1581.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100135969;103504923 ERS1195745 ERX1510744 GENOMIC 332848687 2016-06-10 PHESPV1581 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440366/PHESPV1581.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440366/PHESPV1581.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440366 PHESPV1581 ERR1440618 PHESPV1833 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440618 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440618 5512c4c88797565c830b14b9fe71c936;8324696add29157e882fefcda1c23933 1313 99984265 5870b04a6a80784590f60b2606a39177;05eb702003b82a8c81c3939b6c780434 SAMEA4024887 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440618/ERR1440618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440618/ERR1440618_2.fastq.gz 1138149 WGS PHESPV1833 RANDOM 71246729;74571616 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 60d43ce057b2de78dff4032dea27c5c9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440618/ERR1440618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440618/ERR1440618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440618/PHESPV1833.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440618/PHESPV1833.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440618/ERR1440618_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440618/ERR1440618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440618/PHESPV1833.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440618/PHESPV1833.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68426833;71701827 ERS1195997 ERX1510996 GENOMIC 223089144 2016-06-10 PHESPV1833 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440618/PHESPV1833.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440618/PHESPV1833.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440618 PHESPV1833 ERR1440628 PHESPV1843 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440628 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440628 f036c6095e49fbdc34801ecf047aa701;2973ae6760fefc6b8e73febae3ffa024 1313 101888602 d6b8713515f8910a4a18208c202c2382;48c09aa093895a4d06e66a4a8d3434ff SAMEA4024897 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440628/ERR1440628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440628/ERR1440628_2.fastq.gz 1138883 WGS PHESPV1843 RANDOM 72418621;75573275 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8ddfa01425c00cb6ea73f0e496c9cdba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440628/ERR1440628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440628/ERR1440628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440628/PHESPV1843.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440628/PHESPV1843.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440628/ERR1440628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440628/ERR1440628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440628/PHESPV1843.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440628/PHESPV1843.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69576572;72686592 ERS1196007 ERX1511006 GENOMIC 223324478 2016-06-10 PHESPV1843 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440628/PHESPV1843.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440628/PHESPV1843.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440628 PHESPV1843 ERR1440666 PHESPV1881 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440666 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440666 bcc88ba7c5675a2d8065583495f57d0a;454166a4f479dc4223b72cf300adfcb7 1313 109103107 3a7991705ad92a88b2d321de746f9d51;52929b965bca172b6182318d6f18fae0 SAMEA4024935 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440666/ERR1440666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440666/ERR1440666_2.fastq.gz 1179305 WGS PHESPV1881 RANDOM 78022404;77855762 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2da73988ad955e9ab72d4597df3211a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440666/ERR1440666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440666/ERR1440666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440666/PHESPV1881.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440666/PHESPV1881.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440666/ERR1440666_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440666/ERR1440666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440666/PHESPV1881.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440666/PHESPV1881.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75002186;74833326 ERS1196045 ERX1511044 GENOMIC 228949712 2016-06-10 PHESPV1881 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440666/PHESPV1881.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440666/PHESPV1881.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440666 PHESPV1881 ERR1440677 PHESPV1892 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440677 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440677 1565532911d2ee587b50ffbd2e28bbca;d1304ccd87b10d44b61c892c9c935a19 1313 85772653 1485dfce350503e9ea1ad7ca215424b2;6a4fc1c19469ca2a42daf29ec28db414 SAMEA4024946 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440677/ERR1440677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440677/ERR1440677_2.fastq.gz 940020 WGS PHESPV1892 RANDOM 61512200;61355492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 92e7eaa2fccc341213fa5da77cfed283 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440677/ERR1440677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440677/ERR1440677_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440677/PHESPV1892.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440677/PHESPV1892.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440677/ERR1440677_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440677/ERR1440677_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440677/PHESPV1892.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440677/PHESPV1892.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59102495;58945103 ERS1196056 ERX1511055 GENOMIC 181541482 2016-06-10 PHESPV1892 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440677/PHESPV1892.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440677/PHESPV1892.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440677 PHESPV1892 ERR1440680 PHESPV1895 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440680 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440680 34058ff8ac81607e60c9881ee7c72723;b2b3d4f238a06f085be33bf603432e3a 1313 129645258 e6924d3b116814145dca46bb789e88aa;ecee41eb8126c37e76a1378d18398902 SAMEA4024949 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440680/ERR1440680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440680/ERR1440680_2.fastq.gz 1388931 WGS PHESPV1895 RANDOM 92256281;92624478 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline de4a8a445f83c6ca094dae38084ff608 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440680/ERR1440680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440680/ERR1440680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440680/PHESPV1895.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440680/PHESPV1895.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440680/ERR1440680_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440680/ERR1440680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440680/PHESPV1895.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440680/PHESPV1895.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88685864;89055246 ERS1196059 ERX1511058 GENOMIC 271149047 2016-06-10 PHESPV1895 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440680/PHESPV1895.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440680/PHESPV1895.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440680 PHESPV1895 ERR1440683 PHESPV1898 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440683 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440683 6f5c1cd6927afd1990335b37e812b859;654a42f50a5dd8a6879b4e677152da53 1313 144298612 c00452f319ca2226b2e9e0c48be5af37;87abd0f6662fc05043f4487127d7fa64 SAMEA4024952 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440683/ERR1440683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440683/ERR1440683_2.fastq.gz 1547339 WGS PHESPV1898 RANDOM 102724258;102934734 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0461d650a4303c457a40cfc89245a918 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440683/ERR1440683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440683/ERR1440683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440683/PHESPV1898.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440683/PHESPV1898.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440683/ERR1440683_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440683/ERR1440683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440683/PHESPV1898.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440683/PHESPV1898.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98641484;98851763 ERS1196062 ERX1511061 GENOMIC 300378687 2016-06-10 PHESPV1898 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440683/PHESPV1898.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440683/PHESPV1898.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440683 PHESPV1898 ERR1440684 PHESPV1899 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440684 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440684 679bdb5187f2a568c82b2aa8864c4650;b0d4e4ec17ca55cf90a07f1c67929e40 1313 106605613 94ccb2120f218aa51798845675b392e9;31e9928e02f9613008a422692e24a9b5 SAMEA4024953 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440684/ERR1440684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440684/ERR1440684_2.fastq.gz 1137498 WGS PHESPV1899 RANDOM 75199321;76444442 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f4ee42f6d15989cded25d7ba20a88b2b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440684/ERR1440684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440684/ERR1440684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440684/PHESPV1899.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440684/PHESPV1899.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440684/ERR1440684_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440684/ERR1440684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440684/PHESPV1899.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440684/PHESPV1899.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72281260;73521434 ERS1196063 ERX1511062 GENOMIC 220057508 2016-06-10 PHESPV1899 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440684/PHESPV1899.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440684/PHESPV1899.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440684 PHESPV1899 ERR1440693 PHESPV1908 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440693 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440693 ecc04a08224f875273ce558c91a7d25a;a13daafe95b1046c5b2c12f9e0671079 1313 120025956 158c778c99b647f8715229703730b710;e2b312e1a142cf0c892dc55f86e1da63 SAMEA4024962 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440693/ERR1440693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440693/ERR1440693_2.fastq.gz 1284536 WGS PHESPV1908 RANDOM 84482365;86146178 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline df9f5d20fe8745693f887ecbd4258e83 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440693/ERR1440693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440693/ERR1440693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440693/PHESPV1908.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440693/PHESPV1908.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440693/ERR1440693_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440693/ERR1440693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440693/PHESPV1908.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440693/PHESPV1908.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81153312;82811570 ERS1196072 ERX1511071 GENOMIC 247653304 2016-06-10 PHESPV1908 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440693/PHESPV1908.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440693/PHESPV1908.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440693 PHESPV1908 ERR1440696 PHESPV1911 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440696 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440696 00382aff313770d9b53f000574bcc833;d540d25637c351ba85cc7099c877a4df 1313 80056548 d0b856e9a68460216940148302028a61;e23c09e6c5750e74e82159004ada22df SAMEA4024965 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440696/ERR1440696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440696/ERR1440696_2.fastq.gz 857674 WGS PHESPV1911 RANDOM 57028471;57314420 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e683cd95a47c9b7e013bbdbd594d624 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440696/ERR1440696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440696/ERR1440696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440696/PHESPV1911.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440696/PHESPV1911.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440696/ERR1440696_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440696/ERR1440696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440696/PHESPV1911.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440696/PHESPV1911.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54832284;55112648 ERS1196075 ERX1511074 GENOMIC 167084798 2016-06-10 PHESPV1911 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440696/PHESPV1911.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440696/PHESPV1911.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440696 PHESPV1911 ERR1440724 PHESPV1939 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440724 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440724 541e7637bd92ee406befc20d48ce33a9;2df2dbcbadf41995705292519e834580 1313 156612046 d42c3636cb8da2a0c3726d9f8ffc031a;269d017c13e72e26e33f04835fdec324 SAMEA4024993 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440724/ERR1440724_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440724/ERR1440724_2.fastq.gz 1670835 WGS PHESPV1939 RANDOM 110403631;112469575 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b9002419a8929cf8c5a927668d0aa332 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440724/ERR1440724_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440724/ERR1440724_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440724/PHESPV1939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440724/PHESPV1939.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440724/ERR1440724_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440724/ERR1440724_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440724/PHESPV1939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440724/PHESPV1939.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105996314;108050021 ERS1196103 ERX1511102 GENOMIC 324351925 2016-06-10 PHESPV1939 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440724/PHESPV1939.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440724/PHESPV1939.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440724 PHESPV1939 ERR1440787 PHESPV2002 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440787 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440787 4552876c1094b16dde28594259a23c5e;eaa7abffedeb8e43ce89e2e49394732a 1313 137838938 0b04cd87cc979c7b2faaeb592ff23100;e4bae1444d5f6098e22f3ab89c65bfc0 SAMEA4025056 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440787/ERR1440787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440787/ERR1440787_2.fastq.gz 1530586 WGS PHESPV2002 RANDOM 98297620;101682135 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8f773afcef395a213635e819527d1550 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440787/ERR1440787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440787/ERR1440787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440787/PHESPV2002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440787/PHESPV2002.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440787/ERR1440787_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440787/ERR1440787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440787/PHESPV2002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440787/PHESPV2002.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94337873;97701184 ERS1196166 ERX1511165 GENOMIC 298246480 2016-06-10 PHESPV2002 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440787/PHESPV2002.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440787/PHESPV2002.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440787 PHESPV2002 ERR1439014 PHESPV0225 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439014 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439014 c8fb2fcae271e6b142acd6d1ff2e1cfc;e9702588afe0250a67828ff2773eac4f 1313 332765093 50aa52f44c5d96788a6203cb4d1c7a23;951053e04454b11bb0c9eb5b86b9f4fa SAMEA4023283 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439014/ERR1439014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439014/ERR1439014_2.fastq.gz 2619939 WGS PHESPV0225 RANDOM 206141659;209174578 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0561b986acf063886adee6208fc88af8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439014/ERR1439014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439014/ERR1439014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439014/PHESPV0225.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439014/PHESPV0225.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439014/ERR1439014_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439014/ERR1439014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439014/PHESPV0225.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439014/PHESPV0225.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 213986510;216971821 ERS1194393 ERX1509392 GENOMIC 505763351 2016-06-10 PHESPV0225 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439014/PHESPV0225.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439014/PHESPV0225.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439014 PHESPV0225 ERR1439090 PHESPV0301 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439090 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439090 54be05de46c9d5b91264c7dd8205a6dd;edf5929e9aa1a9d1249d48e4dbd6dd77 1313 151991806 54e6929b03a8124e80e6398542239897;ef04c0e288db760953750a84f36f4751 SAMEA4023359 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439090/ERR1439090_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439090/ERR1439090_2.fastq.gz 1655292 WGS PHESPV0301 RANDOM 109106782;110468493 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 45e4442ac368ad69d695cb2563730fac ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439090/ERR1439090_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439090/ERR1439090_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439090/PHESPV0301.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439090/PHESPV0301.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439090/ERR1439090_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439090/ERR1439090_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439090/PHESPV0301.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439090/PHESPV0301.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104738980;106111943 ERS1194469 ERX1509468 GENOMIC 322870248 2016-06-10 PHESPV0301 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439090/PHESPV0301.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439090/PHESPV0301.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439090 PHESPV0301 ERR1439157 PHESPV0368 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439157 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439157 76420f56ec596aaa486dc7c14a7c7ef9;ba37db48d5d05f6f17e2c20c21123007 1313 139613400 8cfaa9e3bbe43f1c526e9447b1bc2ae8;57be60f3a558558b8b4f57b781fd591e SAMEA4023426 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439157/ERR1439157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439157/ERR1439157_2.fastq.gz 1506169 WGS PHESPV0368 RANDOM 101099385;100365071 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7ac7a7e37bbe73056f8d91b1e88e77bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439157/ERR1439157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439157/ERR1439157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439157/PHESPV0368.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439157/PHESPV0368.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439157/ERR1439157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439157/ERR1439157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439157/PHESPV0368.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439157/PHESPV0368.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97226047;96507977 ERS1194536 ERX1509535 GENOMIC 295377591 2016-06-10 PHESPV0368 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439157/PHESPV0368.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439157/PHESPV0368.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439157 PHESPV0368 ERR1439226 PHESPV0437 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439226 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439226 b32db939fe2191d01551befbde011a5f;e204b396f80cd136384302c3d9ea20e1 1313 134622162 7294ad7f13dc5f7afc773a5f0988c6c6;f661e8c1c526216046949dfdab5ee8b7 SAMEA4023495 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439226/ERR1439226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439226/ERR1439226_2.fastq.gz 1465921 WGS PHESPV0437 RANDOM 97786800;96907180 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ec44c4f72530f0f9c072bc0276da18cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439226/ERR1439226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439226/ERR1439226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439226/PHESPV0437.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439226/PHESPV0437.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439226/ERR1439226_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439226/ERR1439226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439226/PHESPV0437.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439226/PHESPV0437.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94030013;93172648 ERS1194605 ERX1509604 GENOMIC 287366420 2016-06-10 PHESPV0437 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439226/PHESPV0437.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439226/PHESPV0437.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439226 PHESPV0437 ERR1439171 PHESPV0382 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439171 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439171 5121e19621ddbf459631147ca70cd736;69be5d9a406e2c200e02c40a8752dd4c 1313 133447298 bedf1186d543ba8309eced9c03f1a91a;1d590500cd232dee7149b089cd03e8f7 SAMEA4023440 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439171/ERR1439171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439171/ERR1439171_2.fastq.gz 1438791 WGS PHESPV0382 RANDOM 96663510;96061307 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a575b7e44d907575cc9a07afc742165d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439171/ERR1439171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439171/ERR1439171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439171/PHESPV0382.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439171/PHESPV0382.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439171/ERR1439171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439171/ERR1439171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439171/PHESPV0382.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439171/PHESPV0382.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92994308;92408458 ERS1194550 ERX1509549 GENOMIC 283114595 2016-06-10 PHESPV0382 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439171/PHESPV0382.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439171/PHESPV0382.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439171 PHESPV0382 ERR1439300 PHESPV0511 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439300 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439300 ddb6d87014c30943ed68ad07b750989d;f1b51235cb4e3223da55685b27be3be6 1313 160701232 280c83c38ba69dc0ee3d029779df99f1;6b24baef38a0a0c525fb0061e105a101 SAMEA4023569 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439300/ERR1439300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439300/ERR1439300_2.fastq.gz 1714595 WGS PHESPV0511 RANDOM 115754016;116073173 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 329f6fd7acbf92045508565fdfa1907d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439300/ERR1439300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439300/ERR1439300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439300/PHESPV0511.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439300/PHESPV0511.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439300/ERR1439300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439300/ERR1439300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439300/PHESPV0511.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439300/PHESPV0511.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111224895;111552124 ERS1194679 ERX1509678 GENOMIC 334918891 2016-06-10 PHESPV0511 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439300/PHESPV0511.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439300/PHESPV0511.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439300 PHESPV0511 ERR1439441 PHESPV0652 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439441 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439441 ebb7dc73ddd34908924de08e542a1401;32160c042891aa8d706cdfc62b1f800e 1313 101034989 f74f2b2d199e749b6cec0f2f62bf693d;466bba42309907437ad5434c6500c216 SAMEA4023710 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439441/ERR1439441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439441/ERR1439441_2.fastq.gz 1102093 WGS PHESPV0652 RANDOM 72022999;73905225 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 359ab512032d91938b39732daa780db8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439441/ERR1439441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439441/ERR1439441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439441/PHESPV0652.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439441/PHESPV0652.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439441/ERR1439441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439441/ERR1439441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439441/PHESPV0652.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439441/PHESPV0652.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69208981;71094080 ERS1194820 ERX1509819 GENOMIC 214655227 2016-06-10 PHESPV0652 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439441/PHESPV0652.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439441/PHESPV0652.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439441 PHESPV0652 ERR1439471 PHESPV0682 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439471 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439471 fbb83a8709b93564fc657bb55fdf9f77;60d03a5532de099b3a8d9afbf000a914 1313 159724049 14fdb0cd352278de75c06dcf61944076;c4e76bc23348d9617434d21a3baa6692 SAMEA4023740 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439471/ERR1439471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439471/ERR1439471_2.fastq.gz 1765959 WGS PHESPV0682 RANDOM 111090418;112025670 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c4b4948c57309d645c4431d79ce5807f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439471/ERR1439471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439471/ERR1439471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439471/PHESPV0682.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439471/PHESPV0682.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439471/ERR1439471_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439471/ERR1439471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439471/PHESPV0682.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439471/PHESPV0682.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106403915;107411480 ERS1194850 ERX1509849 GENOMIC 323225507 2016-06-10 PHESPV0682 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439471/PHESPV0682.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439471/PHESPV0682.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439471 PHESPV0682 ERR1439553 PHESPV0764 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439553 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439553 590399b486c547f8cddf947d8b29c636;f006cff3deaaf38b6a6e927b7cbd4139 1313 131167415 90d7bf0b4bd934ad2921df3f6659d50b;c811b43b4ebb500ff7cb8f8783448d2c SAMEA4023822 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439553/ERR1439553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439553/ERR1439553_2.fastq.gz 1444320 WGS PHESPV0764 RANDOM 91071114;92022254 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d2aeafd09606d86709f83d8604f7cd4e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439553/ERR1439553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439553/ERR1439553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439553/PHESPV0764.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439553/PHESPV0764.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439553/ERR1439553_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439553/ERR1439553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439553/PHESPV0764.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439553/PHESPV0764.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87355755;88354384 ERS1194932 ERX1509931 GENOMIC 264622999 2016-06-10 PHESPV0764 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439553/PHESPV0764.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439553/PHESPV0764.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439553 PHESPV0764 ERR1439539 PHESPV0750 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439539 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439539 41c3d0573c4f9afe8425c7c2e6723ff4;4a2faef8e746caf310569c5dcfb112a0 1313 149233301 26767465cd9bf7f35a9844da01a46de4;c31bf02c6b7433aa63efa62f32161509 SAMEA4023808 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439539/ERR1439539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439539/ERR1439539_2.fastq.gz 1785752 WGS PHESPV0750 RANDOM 101532295;102367118 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6edb046bc8b469ddf495f9989fd8ee9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439539/ERR1439539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439539/ERR1439539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439539/PHESPV0750.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439539/PHESPV0750.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439539/ERR1439539_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439539/ERR1439539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439539/PHESPV0750.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439539/PHESPV0750.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107411609;108256861 ERS1194918 ERX1509917 GENOMIC 348397772 2016-06-10 PHESPV0750 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439539/PHESPV0750.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439539/PHESPV0750.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439539 PHESPV0750 ERR1439559 PHESPV0770 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439559 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439559 51a2c433cfac90afe68340cf24859d84;536ff4fe11840c41fd500d6665a9de1d 1313 183720103 bc1ad0016f6c1e0360d5ac016e228125;2246af77cc4e124ff56087997636983a SAMEA4023828 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439559/ERR1439559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439559/ERR1439559_2.fastq.gz 1992511 WGS PHESPV0770 RANDOM 133100418;131952822 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fd3b6fe2bb740f97ffdf8aad8576aadd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439559/ERR1439559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439559/ERR1439559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439559/PHESPV0770.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439559/PHESPV0770.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439559/ERR1439559_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439559/ERR1439559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439559/PHESPV0770.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439559/PHESPV0770.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127928743;126791747 ERS1194938 ERX1509937 GENOMIC 384408725 2016-06-10 PHESPV0770 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439559/PHESPV0770.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439559/PHESPV0770.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439559 PHESPV0770 ERR1439606 PHESPV0817 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439606 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439606 38d1ef44d799889317e887468782f7ab;1cbcc0d270df92f8aeb79387e5e4d4f0 1313 109360698 19b485852c81a759e7e6ed80b53909d9;e1d2ff11b0e9581f3fe236940357f16f SAMEA4023875 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439606/ERR1439606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439606/ERR1439606_2.fastq.gz 1159231 WGS PHESPV0817 RANDOM 78323497;79391156 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b7b5e8128f8f8c054e23af76e629264d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439606/ERR1439606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439606/ERR1439606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439606/PHESPV0817.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439606/PHESPV0817.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439606/ERR1439606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439606/ERR1439606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439606/PHESPV0817.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439606/PHESPV0817.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75434472;76493288 ERS1194985 ERX1509984 GENOMIC 227065736 2016-06-10 PHESPV0817 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439606/PHESPV0817.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439606/PHESPV0817.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439606 PHESPV0817 ERR1439587 PHESPV0798 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439587 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439587 23333fc7eb78002be5bd9a9cbc0ec4c4;c65d764e4f884bb2dffa85a8c6b13e86 1313 131096272 ac4971c9d5b4e4aaa3b810cfa19b6cdf;90e5a171afc891da319aebaa50a7af9a SAMEA4023856 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439587/ERR1439587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439587/ERR1439587_2.fastq.gz 1433204 WGS PHESPV0798 RANDOM 90474782;92455020 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d5294959e99c142cfad6cdc48d29e919 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439587/ERR1439587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439587/ERR1439587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439587/PHESPV0798.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439587/PHESPV0798.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439587/ERR1439587_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439587/ERR1439587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439587/PHESPV0798.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439587/PHESPV0798.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86797748;88834064 ERS1194966 ERX1509965 GENOMIC 262889737 2016-06-10 PHESPV0798 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439587/PHESPV0798.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439587/PHESPV0798.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439587 PHESPV0798 ERR1439574 PHESPV0785 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439574 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439574 eb22ee129416a3699c83c299b7eae494;6549466c22f1406b2de80409307ca624 1313 131428498 06787d089c4da4120d5c9248895d908e;9e6e96dccdf6f42072add50d9df34757 SAMEA4023843 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439574/ERR1439574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439574/ERR1439574_2.fastq.gz 1423918 WGS PHESPV0785 RANDOM 89677567;93543113 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 31e98d4b48652c367fb811a716db95fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439574/ERR1439574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439574/ERR1439574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439574/PHESPV0785.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439574/PHESPV0785.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439574/ERR1439574_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439574/ERR1439574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439574/PHESPV0785.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439574/PHESPV0785.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85985954;89880414 ERS1194953 ERX1509952 GENOMIC 259540059 2016-06-10 PHESPV0785 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439574/PHESPV0785.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439574/PHESPV0785.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439574 PHESPV0785 ERR1439565 PHESPV0776 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439565 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439565 5ba4a4c621b4e10e54f3e8b87f96ae92;b6dbf74187c0b625f2970c5ae3bbe64a 1313 145720420 7dc1f64938e72cc3828ee84db9249bb0;cbbe752c2af428400690d050cb8e2f3a SAMEA4023834 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439565/ERR1439565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439565/ERR1439565_2.fastq.gz 1551810 WGS PHESPV0776 RANDOM 105237707;105007967 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5d234e69d3707ee6ed972a8ba9bd870 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439565/ERR1439565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439565/ERR1439565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439565/PHESPV0776.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439565/PHESPV0776.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439565/ERR1439565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439565/ERR1439565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439565/PHESPV0776.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439565/PHESPV0776.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101228804;100998916 ERS1194944 ERX1509943 GENOMIC 303451625 2016-06-10 PHESPV0776 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439565/PHESPV0776.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439565/PHESPV0776.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439565 PHESPV0776 ERR1439564 PHESPV0775 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439564 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439564 a7bfc06be804015a1a61194c8325d908;86b5e0f0765e61fa97ac1d2dd3108a01 1313 163835937 c34a3eae203e55c308d9f042e57b6561;1bc56dc91e6d7e657d40b5db0165ae84 SAMEA4023833 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439564/ERR1439564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439564/ERR1439564_2.fastq.gz 1787938 WGS PHESPV0775 RANDOM 112682988;115994965 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 25bb12b2df829e47aaf6f093cc99ae0c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439564/ERR1439564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439564/ERR1439564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439564/PHESPV0775.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439564/PHESPV0775.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439564/ERR1439564_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439564/ERR1439564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439564/PHESPV0775.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439564/PHESPV0775.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107900742;111266216 ERS1194943 ERX1509942 GENOMIC 326363005 2016-06-10 PHESPV0775 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439564/PHESPV0775.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439564/PHESPV0775.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439564 PHESPV0775 ERR1439614 PHESPV0825 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439614 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439614 1028c43e998db0d9be8675c52f4d3ae6;bd881b5095a1d1e0aedc458d3d9486b7 1313 140921722 b292b63f92e397b21f9bc4e3e2aef93d;ce03ac9c5b2e5f869853ab2f54e1767f SAMEA4023883 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439614/ERR1439614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439614/ERR1439614_2.fastq.gz 1545434 WGS PHESPV0825 RANDOM 101028824;101766978 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1b06e8145ab3604752ef7c08e09d328f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439614/ERR1439614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439614/ERR1439614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439614/PHESPV0825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439614/PHESPV0825.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439614/ERR1439614_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439614/ERR1439614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439614/PHESPV0825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439614/PHESPV0825.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96977569;97716432 ERS1194993 ERX1509992 GENOMIC 288867619 2016-06-10 PHESPV0825 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439614/PHESPV0825.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439614/PHESPV0825.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439614 PHESPV0825 ERR1439623 PHESPV0834 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439623 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439623 c7167c1c0006c255b20bd2e041f2f6a1;112d418b8353c7438a758b5ea61c3787 1313 229998039 872d44d298027826e58a286f703fc5ee;275e5fe08cf0eb0265031e4f4c768626 SAMEA4023892 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439623/ERR1439623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439623/ERR1439623_2.fastq.gz 2459121 WGS PHESPV0834 RANDOM 165188054;165470115 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a107792101c33cb6dd5c25f970981264 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439623/ERR1439623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439623/ERR1439623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439623/PHESPV0834.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439623/PHESPV0834.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439623/ERR1439623_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439623/ERR1439623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439623/PHESPV0834.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439623/PHESPV0834.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 159044969;159321416 ERS1195002 ERX1510001 GENOMIC 479829501 2016-06-10 PHESPV0834 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439623/PHESPV0834.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439623/PHESPV0834.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439623 PHESPV0834 ERR1439658 PHESPV0869 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439658 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439658 0e57a5a4fa859ba4b507a1954f9c132e;02ed3dafbe60159ef24ad4c32f609efc 1313 195249750 96475c364730011d5ca743f502cdfec7;15d523c9ed5dfe1c0e10dd3d79999b8f SAMEA4023927 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439658/ERR1439658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439658/ERR1439658_2.fastq.gz 2265528 WGS PHESPV0869 RANDOM 142318561;141711170 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eba172e8a83b9c24df6100e35db800b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439658/ERR1439658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439658/ERR1439658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439658/PHESPV0869.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439658/PHESPV0869.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439658/ERR1439658_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439658/ERR1439658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439658/PHESPV0869.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439658/PHESPV0869.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136483614;135902538 ERS1195037 ERX1510036 GENOMIC 429316110 2016-06-10 PHESPV0869 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439658/PHESPV0869.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439658/PHESPV0869.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439658 PHESPV0869 ERR1439665 PHESPV0876 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439665 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439665 b62109ab7473626e5c209ffabd99e45b;2ed6dbc884345f5264da2a699e9e7824 1313 188945887 14c1d6fa217f6d2adfcbfae2e54d39d3;e27424a3967ba05e2b273cdcdab9c8b2 SAMEA4023934 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439665/ERR1439665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439665/ERR1439665_2.fastq.gz 2106390 WGS PHESPV0876 RANDOM 136943457;137459466 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62f00c10f2078492deb0247b21b6b9cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439665/ERR1439665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439665/ERR1439665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439665/PHESPV0876.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439665/PHESPV0876.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439665/ERR1439665_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439665/ERR1439665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439665/PHESPV0876.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439665/PHESPV0876.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131492967;132029316 ERS1195044 ERX1510043 GENOMIC 411487639 2016-06-10 PHESPV0876 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439665/PHESPV0876.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439665/PHESPV0876.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439665 PHESPV0876 ERR1439679 PHESPV0890 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439679 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439679 0449c097179317bfab97abb13da05b49;2d9d33afdaf9f26dd35cd8361d2eaf4e 1313 189149258 16660c7c3cdf577f5d0a0b42ed479f85;36e1eb574f4d7051f09d28442ffd5c9e SAMEA4023948 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439679/ERR1439679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439679/ERR1439679_2.fastq.gz 2120211 WGS PHESPV0890 RANDOM 135026575;138470127 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e37dd0290c429b3e62b513825487318a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439679/ERR1439679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439679/ERR1439679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439679/PHESPV0890.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439679/PHESPV0890.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439679/ERR1439679_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439679/ERR1439679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439679/PHESPV0890.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439679/PHESPV0890.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129542188;132998298 ERS1195058 ERX1510057 GENOMIC 404370324 2016-06-10 PHESPV0890 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439679/PHESPV0890.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439679/PHESPV0890.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439679 PHESPV0890 ERR1439684 PHESPV0895 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439684 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439684 909d8460fb55cc382a97858f28ba0d29;c06919048df7c0fda5d4c4e04776bf57 1313 176042019 d877017ca9e518ba652ddf54ed6bc446;6728d5bedc6c06077b78742987278697 SAMEA4023953 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439684/ERR1439684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439684/ERR1439684_2.fastq.gz 1969987 WGS PHESPV0895 RANDOM 126695612;128759646 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d0d2c2753d5e405f3fdaa10e1cf50e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439684/ERR1439684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439684/ERR1439684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439684/PHESPV0895.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439684/PHESPV0895.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439684/ERR1439684_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439684/ERR1439684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439684/PHESPV0895.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439684/PHESPV0895.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121560766;123640022 ERS1195063 ERX1510062 GENOMIC 379914219 2016-06-10 PHESPV0895 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439684/PHESPV0895.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439684/PHESPV0895.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439684 PHESPV0895 ERR1439690 PHESPV0901 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439690 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439690 ea37333165337d795dbed6b5d202badb;c2ca42241cc6d843f23dc9b3e3f7037f 1313 164152721 56cf277bf3fe280f3fae3bf1c1bf74e0;60420bbb5ba14af5a08d41fb66c786fb SAMEA4023959 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439690/ERR1439690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439690/ERR1439690_2.fastq.gz 1868523 WGS PHESPV0901 RANDOM 118850665;119336429 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 24ce372b608b1dc5c1963b8a3b95bd91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439690/ERR1439690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439690/ERR1439690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439690/PHESPV0901.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439690/PHESPV0901.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439690/ERR1439690_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439690/ERR1439690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439690/PHESPV0901.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439690/PHESPV0901.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113898251;114409786 ERS1195069 ERX1510068 GENOMIC 356953399 2016-06-10 PHESPV0901 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439690/PHESPV0901.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439690/PHESPV0901.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439690 PHESPV0901 ERR1439698 PHESPV0909 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439698 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439698 9f5cb4da8e27bf6de5a3e84263753ad8;8ebe935c213249073c8a8ad1a0b412a4 1313 179412640 37407cc20ef5db866092f9b57b941c42;3b01972545d2c66684fe00ca319b1013 SAMEA4023967 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439698/ERR1439698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439698/ERR1439698_2.fastq.gz 2018008 WGS PHESPV0909 RANDOM 130481586;130368583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 43a108e319a4a86695ea66ec1f2b1474 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439698/ERR1439698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439698/ERR1439698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439698/PHESPV0909.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439698/PHESPV0909.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439698/ERR1439698_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439698/ERR1439698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439698/PHESPV0909.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439698/PHESPV0909.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125248485;125154157 ERS1195077 ERX1510076 GENOMIC 391744476 2016-06-10 PHESPV0909 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439698/PHESPV0909.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439698/PHESPV0909.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439698 PHESPV0909 ERR1439725 PHESPV0936 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439725 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439725 ecb62a833012fb8816cd121ad2373c24;f27b043ed7328f1e230608327be64dd6 1313 187167604 9289a5830d836c3e35e9d20f4cc6ebf2;fa337bb462d99f04df9bd561a7196a72 SAMEA4023994 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439725/ERR1439725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439725/ERR1439725_2.fastq.gz 2110986 WGS PHESPV0936 RANDOM 136188849;135854973 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 16ccdc9edfbb53953f4ba40d147e90c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439725/ERR1439725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439725/ERR1439725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439725/PHESPV0936.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439725/PHESPV0936.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439725/ERR1439725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439725/ERR1439725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439725/PHESPV0936.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439725/PHESPV0936.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130737523;130428864 ERS1195104 ERX1510103 GENOMIC 409339221 2016-06-10 PHESPV0936 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439725/PHESPV0936.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439725/PHESPV0936.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439725 PHESPV0936 ERR1439745 PHESPV0956 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439745 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439745 c0a676aa1eb9bafd18f757f1ae1791eb;f4b5321a72b8f65c09ad73cbc6ff916f 1313 214314951 9e2bf98365983e814b259fc9fbdbb3a3;df74236c9ae1ead4b3c34936d82f3e0f SAMEA4024014 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439745/ERR1439745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439745/ERR1439745_2.fastq.gz 2386136 WGS PHESPV0956 RANDOM 151512999;157367509 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0416f603388b989e4cc4bf0897950a1d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439745/ERR1439745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439745/ERR1439745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439745/PHESPV0956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439745/PHESPV0956.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439745/ERR1439745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439745/ERR1439745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439745/PHESPV0956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439745/PHESPV0956.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 145479938;151330396 ERS1195124 ERX1510123 GENOMIC 454846494 2016-06-10 PHESPV0956 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439745/PHESPV0956.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439745/PHESPV0956.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439745 PHESPV0956 ERR1439791 PHESPV1002 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439791 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439791 480b79121b0cf583aad29298c578df87;c113c2fc57540b1ecfd8b92631b975c4 1313 171951844 0256d29789dbd4aa78ba5f1afc1efbd1;d7d1773668d21b4e94012998f617b290 SAMEA4024060 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439791/ERR1439791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439791/ERR1439791_2.fastq.gz 1894218 WGS PHESPV1002 RANDOM 123429965;125195897 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cfd053db0412f7c9e384170d9c664d27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439791/ERR1439791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439791/ERR1439791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439791/PHESPV1002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439791/PHESPV1002.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439791/ERR1439791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439791/ERR1439791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439791/PHESPV1002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439791/PHESPV1002.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118473572;120247942 ERS1195170 ERX1510169 GENOMIC 364296929 2016-06-10 PHESPV1002 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439791/PHESPV1002.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439791/PHESPV1002.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439791 PHESPV1002 ERR1439847 PHESPV1058 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439847 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439847 37cab2eeb34165cd13585cebfac4101b;31c5605fb816f668e63c93841e1dc8e0 1313 153135610 f369a33b559ef810d5e1d2f9932b0242;68424fbc6f9f6e07362dad55be041ddf SAMEA4024116 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439847/ERR1439847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439847/ERR1439847_2.fastq.gz 1679615 WGS PHESPV1058 RANDOM 108797011;112315641 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0ea1f43e5b1def11748f4622416fbe19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439847/ERR1439847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439847/ERR1439847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439847/PHESPV1058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439847/PHESPV1058.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439847/ERR1439847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439847/ERR1439847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439847/PHESPV1058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439847/PHESPV1058.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104402545;107914763 ERS1195226 ERX1510225 GENOMIC 322156773 2016-06-10 PHESPV1058 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439847/PHESPV1058.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439847/PHESPV1058.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439847 PHESPV1058 ERR1439853 PHESPV1064 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439853 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439853 e402fb60bb1660343ecb35abb9bcca94;ed22d565d3e205b35204b390b389560d 1313 161694600 df8c7f8c4bb69001e47b7a8865a006b3;9997d3ed00fd8c902a007db3f0d00f47 SAMEA4024122 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439853/ERR1439853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439853/ERR1439853_2.fastq.gz 1801417 WGS PHESPV1064 RANDOM 116978706;117382523 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d8f051bfea392789b2440be7833a398c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439853/ERR1439853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439853/ERR1439853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439853/PHESPV1064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439853/PHESPV1064.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439853/ERR1439853_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439853/ERR1439853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439853/PHESPV1064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439853/PHESPV1064.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112250393;112672205 ERS1195232 ERX1510231 GENOMIC 345333826 2016-06-10 PHESPV1064 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439853/PHESPV1064.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439853/PHESPV1064.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439853 PHESPV1064 ERR1440200 PHESPV1414 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440200 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440200 7b929f3be780f7ec4b8f36a678e94e66;9c6decca09a8983d02d971e3b7246e2b 1313 135554146 0e87bf4c13c5719af2c0fa1072cacbb1;f995f5bf01f4c215d955f2e54462149f SAMEA4024469 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440200/ERR1440200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440200/ERR1440200_2.fastq.gz 1472075 WGS PHESPV1414 RANDOM 96687666;97896890 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d5507f3c818d82be234fadbd31ff7e3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440200/ERR1440200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440200/ERR1440200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440200/PHESPV1414.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440200/PHESPV1414.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440200/ERR1440200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440200/ERR1440200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440200/PHESPV1414.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440200/PHESPV1414.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92870415;94101938 ERS1195579 ERX1510578 GENOMIC 275754348 2016-06-10 PHESPV1414 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440200/PHESPV1414.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440200/PHESPV1414.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440200 PHESPV1414 ERR1440252 PHESPV1467 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440252 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440252 acbad933531471618fdf057b823be310;3fac5ae3f2368ef5f82d60e0d3551f08 1313 116239879 7a9c9423c4ff0471cda4770282e8bf53;6b8982963414759aa7127f7ba34824ea SAMEA4024521 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440252/ERR1440252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440252/ERR1440252_2.fastq.gz 1243570 WGS PHESPV1467 RANDOM 84640533;86135849 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b561a72345510c5256821ba355405734 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440252/ERR1440252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440252/ERR1440252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440252/PHESPV1467.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440252/PHESPV1467.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440252/ERR1440252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440252/ERR1440252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440252/PHESPV1467.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440252/PHESPV1467.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97433534;98870287 ERS1195631 ERX1510630 GENOMIC 248714000 2016-06-10 PHESPV1467 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440252/PHESPV1467.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440252/PHESPV1467.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440252 PHESPV1467 ERR1440308 PHESPV1523 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440308 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440308 6a305ea82d6cca04b6681567d7e6097b;d0327ba7f9c4aa5a2c6d944fab518500 1313 199967000 de34b674a3166a422f7d4b92334e08a6;0ec535f8b1a054e5080c88d63980ba61 SAMEA4024577 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440308/ERR1440308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440308/ERR1440308_2.fastq.gz 2168158 WGS PHESPV1523 RANDOM 143503598;149311637 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aaba722c4db67eaa1325cd327225137d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440308/ERR1440308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440308/ERR1440308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440308/PHESPV1523.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440308/PHESPV1523.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440308/ERR1440308_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440308/ERR1440308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440308/PHESPV1523.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440308/PHESPV1523.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 165676218;171309874 ERS1195687 ERX1510686 GENOMIC 433631600 2016-06-10 PHESPV1523 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440308/PHESPV1523.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440308/PHESPV1523.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440308 PHESPV1523 ERR1440249 PHESPV1464 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440249 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440249 a1ef11bef7066a21aa8336989b06ee8b;b49efb951088ba88758421def7e1179a 1313 181480023 7c8d438e13adaae7a81904a0875c9100;d7bcd1b52fb028f297a104ddacd9cd42 SAMEA4024518 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440249/ERR1440249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440249/ERR1440249_2.fastq.gz 1948645 WGS PHESPV1464 RANDOM 132236845;134953617 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 81699540996c1aeb356e4c500dad817f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440249/ERR1440249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440249/ERR1440249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440249/PHESPV1464.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440249/PHESPV1464.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440249/ERR1440249_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440249/ERR1440249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440249/PHESPV1464.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440249/PHESPV1464.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 151694768;154311842 ERS1195628 ERX1510627 GENOMIC 389729000 2016-06-10 PHESPV1464 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440249/PHESPV1464.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440249/PHESPV1464.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440249 PHESPV1464 ERR1440247 PHESPV1462 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440247 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440247 458d56e4920928f4276c6343b8fef8ba;87c6ef90e53e422a13eb558220830e4f 1313 183070933 28e03d25190c6cef0611425d8432eb4a;276c2dc9bb23b1da3460bc48b4bb3b19 SAMEA4024516 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440247/ERR1440247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440247/ERR1440247_2.fastq.gz 1965191 WGS PHESPV1462 RANDOM 133178412;135834533 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 241d8cbe98b06b2bada8b168c74b48dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440247/ERR1440247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440247/ERR1440247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440247/PHESPV1462.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440247/PHESPV1462.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440247/ERR1440247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440247/ERR1440247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440247/PHESPV1462.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440247/PHESPV1462.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 152960525;155528684 ERS1195626 ERX1510625 GENOMIC 393038200 2016-06-10 PHESPV1462 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440247/PHESPV1462.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440247/PHESPV1462.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440247 PHESPV1462 ERR1440432 PHESPV1647 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440432 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440432 36f0f6dafe8bb0ff4c484cd2f1ce86cd;b01654dfe04d7e2de4fe4baf0777a23a 1313 160049833 a34c073e2449d5a52533ff38365954ad;ba7d5f754fb55ad7c62a4e76eba452ca SAMEA4024701 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440432/ERR1440432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440432/ERR1440432_2.fastq.gz 1788503 WGS PHESPV1647 RANDOM 114268639;117594567 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 452929141f28b4ce198023faafdd3ef8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440432/ERR1440432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440432/ERR1440432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440432/PHESPV1647.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440432/PHESPV1647.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440432/ERR1440432_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440432/ERR1440432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440432/PHESPV1647.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440432/PHESPV1647.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109573258;112891323 ERS1195811 ERX1510810 GENOMIC 339962652 2016-06-10 PHESPV1647 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440432/PHESPV1647.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440432/PHESPV1647.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440432 PHESPV1647 ERR1440599 PHESPV1814 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440599 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440599 84f51437fd9517e98b00bd049cbdd1a0;23f2bfadb51d4eef19e9b49decce1470 1313 111121236 997fb072a05d174efbf24258140defcc;f20d55517929fb65386681aa1be3787f SAMEA4024868 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440599/ERR1440599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440599/ERR1440599_2.fastq.gz 1252151 WGS PHESPV1814 RANDOM 79501667;82248744 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d748229157bc215f7d823b3f961d395 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440599/ERR1440599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440599/ERR1440599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440599/PHESPV1814.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440599/PHESPV1814.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440599/ERR1440599_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440599/ERR1440599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440599/PHESPV1814.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440599/PHESPV1814.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76345829;79049535 ERS1195978 ERX1510977 GENOMIC 246290978 2016-06-10 PHESPV1814 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440599/PHESPV1814.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440599/PHESPV1814.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440599 PHESPV1814 ERR1440605 PHESPV1820 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440605 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440605 794ce6d70dc273f7fbd449cacf7869db;51c50e60bcbc71d64cab16106483949b 1313 109361321 5ef91b7f495996bc1c54deebe4abaee6;d41460702bcccf42860e090694588d3a SAMEA4024874 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440605/ERR1440605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440605/ERR1440605_2.fastq.gz 1240227 WGS PHESPV1820 RANDOM 78105222;81196332 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ffa1e2197cd2eab8b517c2a2d161f568 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440605/ERR1440605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440605/ERR1440605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440605/PHESPV1820.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440605/PHESPV1820.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440605/ERR1440605_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440605/ERR1440605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440605/PHESPV1820.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440605/PHESPV1820.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75009333;78056932 ERS1195984 ERX1510983 GENOMIC 243142653 2016-06-10 PHESPV1820 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440605/PHESPV1820.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440605/PHESPV1820.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440605 PHESPV1820 ERR1440608 PHESPV1823 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440608 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440608 673db299b2bc4d45789d1dd38b7f0a1a;d38ca083359f70052c67e5902b7c0e0f 1313 119500338 84f898e0e57496feedaf0ea85dc651ed;b44e70fea16c34b9f1d2fcadb6f0879e SAMEA4024877 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440608/ERR1440608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440608/ERR1440608_2.fastq.gz 1351741 WGS PHESPV1823 RANDOM 85237770;88746108 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4193a14532638723e75b43354488171b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440608/ERR1440608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440608/ERR1440608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440608/PHESPV1823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440608/PHESPV1823.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440608/ERR1440608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440608/ERR1440608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440608/PHESPV1823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440608/PHESPV1823.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81856477;85321281 ERS1195987 ERX1510986 GENOMIC 265352324 2016-06-10 PHESPV1823 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440608/PHESPV1823.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440608/PHESPV1823.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440608 PHESPV1823 ERR1440615 PHESPV1830 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440615 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440615 a52e99c5e59d35cbf23637ae7e038511;e7b09b750ea43869cad230e626b1c91b 1313 104037766 93e6eeb9ddba3c321f49b64bc5c58fc8;8ad5bee6a6d460264ab800c70d1854ce SAMEA4024884 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440615/ERR1440615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440615/ERR1440615_2.fastq.gz 1210872 WGS PHESPV1830 RANDOM 74576700;77365258 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8f292044eee68992d1ed928c3b6624da ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440615/ERR1440615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440615/ERR1440615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440615/PHESPV1830.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440615/PHESPV1830.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440615/ERR1440615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440615/ERR1440615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440615/PHESPV1830.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440615/PHESPV1830.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71576650;74325970 ERS1195994 ERX1510993 GENOMIC 233573899 2016-06-10 PHESPV1830 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440615/PHESPV1830.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440615/PHESPV1830.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440615 PHESPV1830 ERR1440619 PHESPV1834 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440619 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440619 86c6aa7c075c9278061141411413d3b7;47821eb2adfa38e315e3cf98bdbde284 1313 122378146 040d8de78d6e9c1a3cbad9846392dcf4;cfaf2503ef32369e8072242a8297582c SAMEA4024888 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440619/ERR1440619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440619/ERR1440619_2.fastq.gz 1394060 WGS PHESPV1834 RANDOM 87143687;91245355 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5dbb277153a13ae5eb8cc3d3c69acee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440619/ERR1440619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440619/ERR1440619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440619/PHESPV1834.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440619/PHESPV1834.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440619/ERR1440619_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440619/ERR1440619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440619/PHESPV1834.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440619/PHESPV1834.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83652665;87697952 ERS1195998 ERX1510997 GENOMIC 273608185 2016-06-10 PHESPV1834 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440619/PHESPV1834.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440619/PHESPV1834.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440619 PHESPV1834 ERR1438879 PHESPV0089 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438879 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438879 ebfc147891db3344d286f1fddd5f09ee;05af9f089202832846a6a499d65f7e83 1313 129328481 87fd204c60371dc6d877d57814ee1ede;9d180cb64207a9a7996be27da3f1eda8 SAMEA4023148 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438879/ERR1438879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438879/ERR1438879_2.fastq.gz 1515070 WGS PHESPV0089 RANDOM 86201294;90280158 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2e0629108a53e0f5cb6a7045e7bb58d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438879/ERR1438879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438879/ERR1438879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438879/PHESPV0089.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438879/PHESPV0089.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438879/ERR1438879_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438879/ERR1438879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438879/PHESPV0089.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438879/PHESPV0089.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91230142;95290482 ERS1194258 ERX1509257 GENOMIC 301136747 2016-06-10 PHESPV0089 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438879/PHESPV0089.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438879/PHESPV0089.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438879 PHESPV0089 ERR1439489 PHESPV0700 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439489 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439489 7d70b6a048b23fe4c2a85eaa2f210dcc;76c1b4c187feb88a73e21d972dffdb3a 1313 101546741 2ba97bb82185eee6df28970fdf4a5204;589703755f5abd19b9132edf255e9913 SAMEA4023758 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439489/ERR1439489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439489/ERR1439489_2.fastq.gz 1219509 WGS PHESPV0700 RANDOM 68088147;71221225 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 68c9a79a6f6b762102f6989bd8d84364 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439489/ERR1439489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439489/ERR1439489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439489/PHESPV0700.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439489/PHESPV0700.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439489/ERR1439489_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439489/ERR1439489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439489/PHESPV0700.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439489/PHESPV0700.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72279826;75458143 ERS1194868 ERX1509867 GENOMIC 238370783 2016-06-10 PHESPV0700 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439489/PHESPV0700.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439489/PHESPV0700.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439489 PHESPV0700 ERR1439852 PHESPV1063 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439852 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439852 f60a2159ce2c831aa94b2763b1b1b066;2ac5171b56aaf3559b709b1776185d54 1313 158676577 6d740bede1b099c3dce087db621c9e4d;a215fefa0cea3cdb86099b9b9ca45844 SAMEA4024121 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439852/ERR1439852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439852/ERR1439852_2.fastq.gz 1767375 WGS PHESPV1063 RANDOM 114750316;115075583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 64ccaca7f786d9a2c129ff752e31ae03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439852/ERR1439852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439852/ERR1439852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439852/PHESPV1063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439852/PHESPV1063.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439852/ERR1439852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439852/ERR1439852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439852/PHESPV1063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439852/PHESPV1063.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110095827;110441249 ERS1195231 ERX1510230 GENOMIC 338354395 2016-06-10 PHESPV1063 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439852/PHESPV1063.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439852/PHESPV1063.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439852 PHESPV1063 ERR1439875 PHESPV1086 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439875 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439875 c637e5ef7b7551511442d5d896ffea8d;0e012b8d268033f7d8e5a8239b7ae6eb 1313 174349816 c2b2d5ae60ec6822160f507296a22945;044a11527129354bf2cafc2c9af5ac83 SAMEA4024144 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439875/ERR1439875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439875/ERR1439875_2.fastq.gz 1977053 WGS PHESPV1086 RANDOM 127389445;126823819 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 666442e03b818f4d2decad12a4b462d3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439875/ERR1439875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439875/ERR1439875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439875/PHESPV1086.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439875/PHESPV1086.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439875/ERR1439875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439875/ERR1439875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439875/PHESPV1086.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439875/PHESPV1086.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122229219;121691646 ERS1195254 ERX1510253 GENOMIC 384667386 2016-06-10 PHESPV1086 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439875/PHESPV1086.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439875/PHESPV1086.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439875 PHESPV1086 ERR1439858 PHESPV1069 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439858 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439858 6530ce6d8a73c07a0ae5450ed2d0481d;ae08d542fc77f19173772753efd4b920 1313 137946770 ac6984a0926de8bde241241329e64b55;7b640050ece6b722ca0ee5e501b8acbf SAMEA4024127 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439858/ERR1439858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439858/ERR1439858_2.fastq.gz 1538138 WGS PHESPV1069 RANDOM 99553572;100179063 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline db84b6f0edb2e767b4f72cc8ac9a9c9e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439858/ERR1439858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439858/ERR1439858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439858/PHESPV1069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439858/PHESPV1069.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439858/ERR1439858_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439858/ERR1439858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439858/PHESPV1069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439858/PHESPV1069.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95548393;96189467 ERS1195237 ERX1510236 GENOMIC 293296912 2016-06-10 PHESPV1069 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439858/PHESPV1069.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439858/PHESPV1069.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439858 PHESPV1069 ERR1439881 PHESPV1092 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439881 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439881 d6146173b9d400d877a3beedef59f2de;67a74bd7ef7b12941c9fdb84fea1d27b 1313 128583936 bfe801c62877723151823a1d883ccb5f;fc3dd7596d06961a9f6fe113af1f9ff6 SAMEA4024150 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439881/ERR1439881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439881/ERR1439881_2.fastq.gz 1401805 WGS PHESPV1092 RANDOM 92202726;92613534 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30bd715d32013f368408e3044259b517 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439881/ERR1439881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439881/ERR1439881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439881/PHESPV1092.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439881/PHESPV1092.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439881/ERR1439881_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439881/ERR1439881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439881/PHESPV1092.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439881/PHESPV1092.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88575016;89013800 ERS1195260 ERX1510259 GENOMIC 263675046 2016-06-10 PHESPV1092 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439881/PHESPV1092.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439881/PHESPV1092.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439881 PHESPV1092 ERR1439886 PHESPV1097 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439886 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439886 ae543c02e74f3be831d50f5d8fef436e;a7f2d798617b23dd57ec923232b8399e 1313 108861293 b222e497be827afeede36aab2112901f;40ce9edfbc2c1dcb7bf2321319862a44 SAMEA4024155 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439886/ERR1439886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439886/ERR1439886_2.fastq.gz 1194419 WGS PHESPV1097 RANDOM 77971809;78398253 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a850301e36703fd6f369ddcfc69f12d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439886/ERR1439886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439886/ERR1439886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439886/PHESPV1097.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439886/PHESPV1097.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439886/ERR1439886_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439886/ERR1439886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439886/PHESPV1097.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439886/PHESPV1097.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74932311;75379683 ERS1195265 ERX1510264 GENOMIC 221239552 2016-06-10 PHESPV1097 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439886/PHESPV1097.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439886/PHESPV1097.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439886 PHESPV1097 ERR1439999 PHESPV1210 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439999 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439999 75f68b42eb5a743ffb54925ab879d3b8;9df382340a5430e487e746180fb0275f 1313 112298734 e5a96eaec8b331a0875be657ee91bdf4;9c5a0d9c4a94927fe63bf7b3ea455625 SAMEA4024268 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439999/ERR1439999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439999/ERR1439999_2.fastq.gz 1263926 WGS PHESPV1210 RANDOM 72886938;78455045 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5482309eb25064bda7560ff24f58759a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439999/ERR1439999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439999/ERR1439999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439999/PHESPV1210.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439999/PHESPV1210.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439999/ERR1439999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439999/ERR1439999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439999/PHESPV1210.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439999/PHESPV1210.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77152012;82614835 ERS1195378 ERX1510377 GENOMIC 250396942 2016-06-10 PHESPV1210 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439999/PHESPV1210.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439999/PHESPV1210.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439999 PHESPV1210 ERR1440027 PHESPV1238 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440027 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440027 7f4b476e5bf0e56a31500c9fad0cdcf4;aafd40e03184b8a069ee2e1c7ea9a33e 1313 117366732 653a1e1ed6717ffcb4f230fd6b218e34;f191479a7d49e5e67111d8e4025db5b6 SAMEA4024296 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440027/ERR1440027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440027/ERR1440027_2.fastq.gz 1292529 WGS PHESPV1238 RANDOM 78665648;80039657 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4000a254fffbb7ba948ac76a9ad84cce ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440027/ERR1440027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440027/ERR1440027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440027/PHESPV1238.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440027/PHESPV1238.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440027/ERR1440027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440027/ERR1440027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440027/PHESPV1238.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440027/PHESPV1238.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83034344;84376505 ERS1195406 ERX1510405 GENOMIC 256079158 2016-06-10 PHESPV1238 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440027/PHESPV1238.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440027/PHESPV1238.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440027 PHESPV1238 ERR1440064 PHESPV1275 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440064 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440064 24e2205be5e5d20fd09d20b627664ae4;61d7b4bf09444c746ae2ec52725ad812 1313 125461953 654a09e787f7a620cfc8e392d272e7af;9af7eaa910ecf7168791c172a5d8ea64 SAMEA4024333 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440064/ERR1440064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440064/ERR1440064_2.fastq.gz 1443594 WGS PHESPV1275 RANDOM 82970997;86138653 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 132fc90de975bebb4e261660334f8122 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440064/ERR1440064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440064/ERR1440064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440064/PHESPV1275.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440064/PHESPV1275.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440064/ERR1440064_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440064/ERR1440064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440064/PHESPV1275.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440064/PHESPV1275.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87736706;90866817 ERS1195443 ERX1510442 GENOMIC 286526846 2016-06-10 PHESPV1275 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440064/PHESPV1275.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440064/PHESPV1275.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440064 PHESPV1275 ERR1440093 PHESPV1304 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440093 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440093 b6a229897b96d9f89d11e2a2eed5dee2;70293cd38e9e0be559541042f175266e 1313 119594685 fc2ec69cc2d82b51839fa527e9839e01;5c6698406d563e857d32d5f1a9dedab0 SAMEA4024362 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440093/ERR1440093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440093/ERR1440093_2.fastq.gz 1292094 WGS PHESPV1304 RANDOM 85356060;86376866 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b9d26bff2272c80309f31eeea80836a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440093/ERR1440093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440093/ERR1440093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440093/PHESPV1304.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440093/PHESPV1304.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440093/ERR1440093_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440093/ERR1440093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440093/PHESPV1304.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440093/PHESPV1304.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82045250;83086484 ERS1195472 ERX1510471 GENOMIC 244625291 2016-06-10 PHESPV1304 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440093/PHESPV1304.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440093/PHESPV1304.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440093 PHESPV1304 ERR1440202 PHESPV1416 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440202 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440202 4719a50f4d2350b3c7d91fe0ea5a8c45;7af288837ca4fb30b9dac39ab5d8db21 1313 162236469 7978bdaba7b2df92fba3fe467507c96d;b0ca5b0d93b32d02d3c072f8741f422a SAMEA4024471 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440202/ERR1440202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440202/ERR1440202_2.fastq.gz 1774988 WGS PHESPV1416 RANDOM 116028505;116853912 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f0518610456db8b69e5b34d3a660f5e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440202/ERR1440202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440202/ERR1440202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440202/PHESPV1416.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440202/PHESPV1416.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440202/ERR1440202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440202/ERR1440202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440202/PHESPV1416.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440202/PHESPV1416.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111344130;112197287 ERS1195581 ERX1510580 GENOMIC 329892698 2016-06-10 PHESPV1416 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440202/PHESPV1416.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440202/PHESPV1416.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440202 PHESPV1416 ERR1440198 PHESPV1412 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440198 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440198 03e9af321e0950f55b4e22e43c970a9f;391fad08c51232c5bb20c5a3aaa63977 1313 123832296 620d445ae08d38d93d42bef4628b0e2b;a34bfcca08ff69a2ccc34f58871d2dd1 SAMEA4024467 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440198/ERR1440198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440198/ERR1440198_2.fastq.gz 1341241 WGS PHESPV1412 RANDOM 88391578;89290670 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f1393e911798a1b2b5fc7f08042e5c0d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440198/ERR1440198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440198/ERR1440198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440198/PHESPV1412.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440198/PHESPV1412.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440198/ERR1440198_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440198/ERR1440198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440198/PHESPV1412.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440198/PHESPV1412.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84981261;85901027 ERS1195577 ERX1510576 GENOMIC 251800998 2016-06-10 PHESPV1412 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440198/PHESPV1412.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440198/PHESPV1412.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440198 PHESPV1412 ERR1440206 PHESPV1420 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440206 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440206 8d04012d3aa8e4ba811d379cc5908d20;69782b64c8d203c3651937ad2f5d3ec9 1313 136082339 8317312a681959e193985e1492a2b828;3d9442fe36a795882ad08a6dad51bca6 SAMEA4024475 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440206/ERR1440206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440206/ERR1440206_2.fastq.gz 1468496 WGS PHESPV1420 RANDOM 97431131;97931989 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a70c8c8b40f48ca0760d4b3f1340418 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440206/ERR1440206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440206/ERR1440206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440206/PHESPV1420.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440206/PHESPV1420.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440206/ERR1440206_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440206/ERR1440206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440206/PHESPV1420.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440206/PHESPV1420.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93597629;94123678 ERS1195585 ERX1510584 GENOMIC 277624631 2016-06-10 PHESPV1420 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440206/PHESPV1420.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440206/PHESPV1420.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440206 PHESPV1420 ERR1440213 PHESPV1427 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440213 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440213 f8d565d46bf9eb1f119c8c89aa9e2479;f40b5d78a554fcc5b4d1dd3017f9d7c0 1313 123756882 946bfa67eacc679da873342904dc0b02;391c9c0e62ef50a5025a747bc77a94d7 SAMEA4024482 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440213/ERR1440213_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440213/ERR1440213_2.fastq.gz 1341137 WGS PHESPV1427 RANDOM 88979443;88816945 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0de2ba9aad1b1bc8707211903a7ac292 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440213/ERR1440213_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440213/ERR1440213_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440213/PHESPV1427.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440213/PHESPV1427.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440213/ERR1440213_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440213/ERR1440213_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440213/PHESPV1427.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440213/PHESPV1427.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85551990;85412560 ERS1195592 ERX1510591 GENOMIC 253603939 2016-06-10 PHESPV1427 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440213/PHESPV1427.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440213/PHESPV1427.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440213 PHESPV1427 ERR1440215 PHESPV1429 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440215 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440215 5e70e4a29f53eb24bdc1bb8ea2b27120;e337548f3398d66c64dfdbc15d3c2ea5 1313 109184945 1aea429a934ab6a5762426e4efc85761;4e265a978f2abf82bd2a843ba8c16751 SAMEA4024484 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440215/ERR1440215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440215/ERR1440215_2.fastq.gz 1191366 WGS PHESPV1429 RANDOM 78351876;78578072 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 27cf99465b3ba0836afa748bd6edff43 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440215/ERR1440215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440215/ERR1440215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440215/PHESPV1429.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440215/PHESPV1429.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440215/ERR1440215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440215/ERR1440215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440215/PHESPV1429.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440215/PHESPV1429.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75334158;75580311 ERS1195594 ERX1510593 GENOMIC 222989390 2016-06-10 PHESPV1429 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440215/PHESPV1429.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440215/PHESPV1429.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440215 PHESPV1429 ERR1440218 PHESPV1432 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440218 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440218 33efbc354b30d4e90958204e05e29b6a;95f5104a3e63c9027e53674ebd27caf6 1313 126842714 b488991a554e04509a8208489f7ed5b7;ce329bdc9c381fbbeb22f58734e7881e SAMEA4024487 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440218/ERR1440218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440218/ERR1440218_2.fastq.gz 1358937 WGS PHESPV1432 RANDOM 90544419;91433918 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6d2d1c3736948fc12248bf2284f09a25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440218/ERR1440218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440218/ERR1440218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440218/PHESPV1432.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440218/PHESPV1432.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440218/ERR1440218_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440218/ERR1440218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440218/PHESPV1432.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440218/PHESPV1432.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87053527;87966351 ERS1195597 ERX1510596 GENOMIC 258887124 2016-06-10 PHESPV1432 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440218/PHESPV1432.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440218/PHESPV1432.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440218 PHESPV1432 ERR1440216 PHESPV1430 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440216 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440216 0a349d16fcc197cce43f77620e940e89;2de4fce393d7873081d7beb64c27d252 1313 110268389 2c260a511510fc07c3cb5529f5dae05a;54ce6d0d33c36e0c2f562def0afd7896 SAMEA4024485 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440216/ERR1440216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440216/ERR1440216_2.fastq.gz 1194885 WGS PHESPV1430 RANDOM 79054164;79383691 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42015b3e7e6aa53e2085cff0deed3a5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440216/ERR1440216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440216/ERR1440216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440216/PHESPV1430.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440216/PHESPV1430.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440216/ERR1440216_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440216/ERR1440216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440216/PHESPV1430.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440216/PHESPV1430.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76035682;76386023 ERS1195595 ERX1510594 GENOMIC 225687701 2016-06-10 PHESPV1430 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440216/PHESPV1430.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440216/PHESPV1430.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440216 PHESPV1430 ERR1440234 PHESPV1448 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440234 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440234 f6205a8b2c1b471e8a0f0fcbb608dc97;0224f08629d7cc033ed79e2a99f5d4ef 1313 128942183 e8b5086fb87547a31f152c6470815447;196a204a4f0cc99a94d5ed52fc933275 SAMEA4024503 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440234/ERR1440234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440234/ERR1440234_2.fastq.gz 1388592 WGS PHESPV1448 RANDOM 91600164;93209419 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c8f4b193881d52d23e19e31bdab4f886 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440234/ERR1440234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440234/ERR1440234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440234/PHESPV1448.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440234/PHESPV1448.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440234/ERR1440234_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440234/ERR1440234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440234/PHESPV1448.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440234/PHESPV1448.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88017860;89648924 ERS1195613 ERX1510612 GENOMIC 260887014 2016-06-10 PHESPV1448 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440234/PHESPV1448.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440234/PHESPV1448.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440234 PHESPV1448 ERR1440248 PHESPV1463 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440248 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440248 6be23a75878127272ae061b9c3ead235;928ec612d76b660eb7ddf9c3ebb0b2ba 1313 135529929 7cb2b982c195467af50d361b232fcb35;5800c1704b009dad05131563cc79a704 SAMEA4024517 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440248/ERR1440248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440248/ERR1440248_2.fastq.gz 1480825 WGS PHESPV1463 RANDOM 97290282;97524544 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 282ee6230a8f0c35e032d1c6356991c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440248/ERR1440248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440248/ERR1440248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440248/PHESPV1463.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440248/PHESPV1463.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440248/ERR1440248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440248/ERR1440248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440248/PHESPV1463.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440248/PHESPV1463.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93453334;93717159 ERS1195627 ERX1510626 GENOMIC 277606047 2016-06-10 PHESPV1463 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440248/PHESPV1463.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440248/PHESPV1463.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440248 PHESPV1463 ERR1440280 PHESPV1495 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440280 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440280 e24f4a56568913eeb75dbe695ca0ffb5;9a77cc58b3dc87cc7d026448a28820e1 1313 105138397 a8d5790afb43b9f9da60a65d28233bd3;5f666d1accac91201ac53838d62faf8c SAMEA4024549 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440280/ERR1440280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440280/ERR1440280_2.fastq.gz 1126473 WGS PHESPV1495 RANDOM 74288418;76043704 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f714dbbca927983bb4ecb37e8ab6cf7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440280/ERR1440280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440280/ERR1440280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440280/PHESPV1495.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440280/PHESPV1495.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440280/ERR1440280_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440280/ERR1440280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440280/PHESPV1495.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440280/PHESPV1495.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71439203;73208106 ERS1195659 ERX1510658 GENOMIC 209573472 2016-06-10 PHESPV1495 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440280/PHESPV1495.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440280/PHESPV1495.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440280 PHESPV1495 ERR1440310 PHESPV1525 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440310 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440310 781860494f1b733dadade57f0677318c;254c9b4c2e695f048b9e07efd06b65ed 1313 139338379 978a2cbf7a77b4c55f0054b2e8813ec8;288a7c82983b2f884ebbbc3aa419a3f3 SAMEA4024579 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440310/ERR1440310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440310/ERR1440310_2.fastq.gz 1466755 WGS PHESPV1525 RANDOM 97249035;101671989 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 57e14c07f5d289dc0f671dda45cfd846 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440310/ERR1440310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440310/ERR1440310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440310/PHESPV1525.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440310/PHESPV1525.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440310/ERR1440310_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440310/ERR1440310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440310/PHESPV1525.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440310/PHESPV1525.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93443260;97869601 ERS1195689 ERX1510688 GENOMIC 278734757 2016-06-10 PHESPV1525 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440310/PHESPV1525.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440310/PHESPV1525.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440310 PHESPV1525 ERR1440311 PHESPV1526 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440311 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440311 141cdd632ced1b9f3bcff217f1d58756;11707983bca35ee7e7ebc33e7537fe28 1313 150235983 351e249b53d113cbed7d3a54887b1cb0;376c13d662e1e9889d38a64767d5c752 SAMEA4024580 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440311/ERR1440311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440311/ERR1440311_2.fastq.gz 1618845 WGS PHESPV1526 RANDOM 108060683;108051992 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dced188ac790a33133d9fb50ea79d777 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440311/ERR1440311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440311/ERR1440311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440311/PHESPV1526.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440311/PHESPV1526.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440311/ERR1440311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440311/ERR1440311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440311/PHESPV1526.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440311/PHESPV1526.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103832133;103852063 ERS1195690 ERX1510689 GENOMIC 309758152 2016-06-10 PHESPV1526 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440311/PHESPV1526.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440311/PHESPV1526.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440311 PHESPV1526 ERR1440316 PHESPV1531 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440316 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440316 b2bdbc80dffdae5701e6b1d1ced5a012;359980a80d735dea2acda88bc45c81c4 1313 187532934 cb36b3768f711da874e91430a1714d6e;ba5c2d82a65efe8120b509f9139c5e37 SAMEA4024585 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440316/ERR1440316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440316/ERR1440316_2.fastq.gz 2178511 WGS PHESPV1531 RANDOM 134441825;140658215 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee4bd760bc61347f8cdcdcd19257f491 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440316/ERR1440316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440316/ERR1440316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440316/PHESPV1531.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440316/PHESPV1531.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440316/ERR1440316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440316/ERR1440316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440316/PHESPV1531.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440316/PHESPV1531.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128906342;135079055 ERS1195695 ERX1510694 GENOMIC 429228807 2016-06-10 PHESPV1531 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440316/PHESPV1531.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440316/PHESPV1531.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440316 PHESPV1531 ERR1440318 PHESPV1533 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440318 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440318 7126c7be711b4befe91adb0e960b10bc;7508a396a4b1de0494ccf6eca8297822 1313 174105034 b64d3276a5612f77f0faa709b056e66f;d8abc0d45157c16d1f72746174ec2d42 SAMEA4024587 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440318/ERR1440318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440318/ERR1440318_2.fastq.gz 2065530 WGS PHESPV1533 RANDOM 126811051;129948019 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a86d3773801408913da707bdeb85591 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440318/ERR1440318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440318/ERR1440318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440318/PHESPV1533.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440318/PHESPV1533.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440318/ERR1440318_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440318/ERR1440318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440318/PHESPV1533.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440318/PHESPV1533.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121578204;124684028 ERS1195697 ERX1510696 GENOMIC 405469202 2016-06-10 PHESPV1533 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440318/PHESPV1533.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440318/PHESPV1533.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440318 PHESPV1533 ERR1440321 PHESPV1536 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440321 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440321 d873197ece76e8a0e8401af18fe33788;aa9275bd3a3b1c741b37390880f57186 1313 140454752 51bf29f80033723dfb74d097cf094cac;de1c051591143ab491a804ee21938f12 SAMEA4024590 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440321/ERR1440321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440321/ERR1440321_2.fastq.gz 1515419 WGS PHESPV1536 RANDOM 98497961;102424333 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 02e7f89b27709dcde1e6335b65add948 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440321/ERR1440321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440321/ERR1440321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440321/PHESPV1536.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440321/PHESPV1536.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440321/ERR1440321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440321/ERR1440321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440321/PHESPV1536.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440321/PHESPV1536.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94552873;98495590 ERS1195700 ERX1510699 GENOMIC 281634827 2016-06-10 PHESPV1536 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440321/PHESPV1536.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440321/PHESPV1536.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440321 PHESPV1536 ERR1440327 PHESPV1542 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440327 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440327 1bab38d375fe6be2335c0d2a52131449;9a963f5f06848932f2851d146271c2ea 1313 123411105 bcc892b76298240871eaaad7d790b992;6069d40b7e0dd73b9db5287c24e8ae86 SAMEA4024596 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440327/ERR1440327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440327/ERR1440327_2.fastq.gz 1436966 WGS PHESPV1542 RANDOM 89584260;92270430 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b7751719b7582df54ed994fbd3633a75 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440327/ERR1440327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440327/ERR1440327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440327/PHESPV1542.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440327/PHESPV1542.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440327/ERR1440327_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440327/ERR1440327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440327/PHESPV1542.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440327/PHESPV1542.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86026161;88676975 ERS1195706 ERX1510705 GENOMIC 284371817 2016-06-10 PHESPV1542 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440327/PHESPV1542.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440327/PHESPV1542.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440327 PHESPV1542 ERR1440344 PHESPV1559 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440344 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440344 98a81e8127c2d4c55f64927dbb7eb254;5a782242f44465beaab27dda81682800 1313 123431924 4b65d7b90475a4c86c4e8d7d27669301;70de84f108b5b539c9daa6afc1f09695 SAMEA4024613 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440344/ERR1440344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440344/ERR1440344_2.fastq.gz 1446616 WGS PHESPV1559 RANDOM 89482032;92326460 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62baff4b456f61834f83cb11b6907633 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440344/ERR1440344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440344/ERR1440344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440344/PHESPV1559.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440344/PHESPV1559.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440344/ERR1440344_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440344/ERR1440344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440344/PHESPV1559.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440344/PHESPV1559.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85908839;88710935 ERS1195723 ERX1510722 GENOMIC 284446877 2016-06-10 PHESPV1559 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440344/PHESPV1559.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440344/PHESPV1559.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440344 PHESPV1559 ERR1440365 PHESPV1580 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440365 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440365 8ce0d0222d462021017c4abf60fd0d82;4b69710c180984497a472199f812e208 1313 106432830 a4612c87b50af98904e81882e058a376;a745f985e7685c781f77aa66bdf7e08e SAMEA4024634 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440365/ERR1440365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440365/ERR1440365_2.fastq.gz 1225496 WGS PHESPV1580 RANDOM 77003330;79354995 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f0198fb8d9aab0fdbaa198ad5bbca92b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440365/ERR1440365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440365/ERR1440365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440365/PHESPV1580.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440365/PHESPV1580.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440365/ERR1440365_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440365/ERR1440365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440365/PHESPV1580.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440365/PHESPV1580.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74017732;76327679 ERS1195744 ERX1510743 GENOMIC 241743968 2016-06-10 PHESPV1580 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440365/PHESPV1580.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440365/PHESPV1580.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440365 PHESPV1580 ERR1440368 PHESPV1583 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440368 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440368 07b26268e9e45e32b170064efa948dc8;2bfc860ebae281d68e48b6fd60a20970 1313 182659523 0af9f2e1ddf2a5a250c39907332e2021;cdd5e8b190b13dd4c34eb1437cef8c80 SAMEA4024637 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440368/ERR1440368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440368/ERR1440368_2.fastq.gz 2157580 WGS PHESPV1583 RANDOM 132828522;136142482 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8f16cabe9b003282f4c7b3b6a3fd2e73 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440368/ERR1440368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440368/ERR1440368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440368/PHESPV1583.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440368/PHESPV1583.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440368/ERR1440368_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440368/ERR1440368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440368/PHESPV1583.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440368/PHESPV1583.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127373062;130656025 ERS1195747 ERX1510746 GENOMIC 424119013 2016-06-10 PHESPV1583 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440368/PHESPV1583.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440368/PHESPV1583.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440368 PHESPV1583 ERR1440371 PHESPV1586 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440371 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440371 5500f9a4350666d2a3f3352f93695bc6;362591183ea6b535e99c796e372d7c1f 1313 131996267 9a8a062c3f3b2d5358d44a6ed677df3d;a4acf85ab01e74c66758da71795da603 SAMEA4024640 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440371/ERR1440371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440371/ERR1440371_2.fastq.gz 1555575 WGS PHESPV1586 RANDOM 96187165;98614661 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 60204814cd581798eec5194a67fdce3b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440371/ERR1440371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440371/ERR1440371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440371/PHESPV1586.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440371/PHESPV1586.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440371/ERR1440371_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440371/ERR1440371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440371/PHESPV1586.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440371/PHESPV1586.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92290696;94681789 ERS1195750 ERX1510749 GENOMIC 306181385 2016-06-10 PHESPV1586 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440371/PHESPV1586.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440371/PHESPV1586.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440371 PHESPV1586 ERR1440376 PHESPV1591 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440376 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440376 8bef37d10f686b1d4118894a2fbb5bae;497ab223bd441ecbf02c864dc3191b1b 1313 173112257 dffd38899e1a4c7d2ed2d417ce329488;feab7641dee1b7798f107dc3e636e6e3 SAMEA4024645 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440376/ERR1440376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440376/ERR1440376_2.fastq.gz 2021592 WGS PHESPV1591 RANDOM 124797577;129863048 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 137f36cce5905d5542be486b652a1a96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440376/ERR1440376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440376/ERR1440376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440376/PHESPV1591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440376/PHESPV1591.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440376/ERR1440376_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440376/ERR1440376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440376/PHESPV1591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440376/PHESPV1591.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119646720;124673332 ERS1195755 ERX1510754 GENOMIC 398501129 2016-06-10 PHESPV1591 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440376/PHESPV1591.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440376/PHESPV1591.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440376 PHESPV1591 ERR1440407 PHESPV1622 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440407 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440407 797625ee7316d49172a51cc4e95b68a9;78e8910b8905eead1381ba7047995350 1313 108882660 82eaab0c8f2700b78ef02210e721d1c5;6ca8819763550f226ee8facd501449ed SAMEA4024676 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440407/ERR1440407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440407/ERR1440407_2.fastq.gz 1209257 WGS PHESPV1622 RANDOM 78381311;79802897 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f4b8b8fa775a1f433dad3d68a83fabb5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440407/ERR1440407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440407/ERR1440407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440407/PHESPV1622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440407/PHESPV1622.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440407/ERR1440407_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440407/ERR1440407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440407/PHESPV1622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440407/PHESPV1622.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75359492;76780990 ERS1195786 ERX1510785 GENOMIC 234647899 2016-06-10 PHESPV1622 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440407/PHESPV1622.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440407/PHESPV1622.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440407 PHESPV1622 ERR1440403 PHESPV1618 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440403 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440403 76bebc4d836ba224b0812c02fead2200;c288fe2836905da7b915d86f699d6fc8 1313 184817692 e9df1d032b3d8c7bc41fdd24bcb96375;2e4994881d04d1b45b9bf981c98026ad SAMEA4024672 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440403/ERR1440403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440403/ERR1440403_2.fastq.gz 2137447 WGS PHESPV1618 RANDOM 132168051;138513178 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3db1fd4b3b8eaa6b10c57b10bd55bd2d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440403/ERR1440403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440403/ERR1440403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440403/PHESPV1618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440403/PHESPV1618.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440403/ERR1440403_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440403/ERR1440403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440403/PHESPV1618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440403/PHESPV1618.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126707447;133001406 ERS1195782 ERX1510781 GENOMIC 419242429 2016-06-10 PHESPV1618 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440403/PHESPV1618.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440403/PHESPV1618.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440403 PHESPV1618 ERR1440419 PHESPV1634 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440419 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440419 6e669b1c6b1e088e8dfe3f0011d90140;1ecc7c6f5086476842e61ec9bdd1c474 1313 129745373 7403cfb022eee481ed6bb83573bef499;49b9e8d66eff5a4411aeb2ae857c7ab1 SAMEA4024688 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440419/ERR1440419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440419/ERR1440419_2.fastq.gz 1432636 WGS PHESPV1634 RANDOM 93455434;95154312 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 413b29f3378341aba4cbbc088b8a26dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440419/ERR1440419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440419/ERR1440419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440419/PHESPV1634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440419/PHESPV1634.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440419/ERR1440419_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440419/ERR1440419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440419/PHESPV1634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440419/PHESPV1634.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89884850;91580676 ERS1195798 ERX1510797 GENOMIC 280578780 2016-06-10 PHESPV1634 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440419/PHESPV1634.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440419/PHESPV1634.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440419 PHESPV1634 ERR1440470 PHESPV1685 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440470 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440470 2076cfeeda96277cf53ad2a91af18f65;58c537d61124250c15dcde57c06ccca7 1313 90995613 2ae9f7e8a9e70393f405b3a378555e45;7c95d6a2381959652a97105b699f5037 SAMEA4024739 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440470/ERR1440470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440470/ERR1440470_2.fastq.gz 986958 WGS PHESPV1685 RANDOM 65327400;66899887 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c8951a995d22d521a8144ce9793a1ae ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440470/ERR1440470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440470/ERR1440470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440470/PHESPV1685.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440470/PHESPV1685.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440470/ERR1440470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440470/ERR1440470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440470/PHESPV1685.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440470/PHESPV1685.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62846340;64408916 ERS1195849 ERX1510848 GENOMIC 194534729 2016-06-10 PHESPV1685 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440470/PHESPV1685.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440470/PHESPV1685.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440470 PHESPV1685 ERR1440475 PHESPV1690 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440475 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440475 aeee2a27dfba7b895da79a89cd34c368;a80de3a5fa178711f6c67028ae1e3bce 1313 115591434 7b15685814b7cc3f9853d6958abf8d77;a3871153cb26f1959149173b929edd55 SAMEA4024744 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440475/ERR1440475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440475/ERR1440475_2.fastq.gz 1272124 WGS PHESPV1690 RANDOM 83015831;84839313 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 506a5d2af4fe5c81b388dfd44dff83cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440475/ERR1440475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440475/ERR1440475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440475/PHESPV1690.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440475/PHESPV1690.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440475/ERR1440475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440475/ERR1440475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440475/PHESPV1690.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440475/PHESPV1690.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79892821;81713903 ERS1195854 ERX1510853 GENOMIC 248910405 2016-06-10 PHESPV1690 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440475/PHESPV1690.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440475/PHESPV1690.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440475 PHESPV1690 ERR1440477 PHESPV1692 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440477 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440477 f7d1bfcc2eef6f46d871d80231bbbc53;cc8956128c96d80b2f526f4468e2b942 1313 135158196 187b3c9c0d0b46e674a8ab5ab87671c6;98c2e7a42324f29d6cae51fae698983e SAMEA4024746 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440477/ERR1440477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440477/ERR1440477_2.fastq.gz 1490779 WGS PHESPV1692 RANDOM 97229169;98145276 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e735126b4792a8b06ea5a1ca771e35e4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440477/ERR1440477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440477/ERR1440477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440477/PHESPV1692.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440477/PHESPV1692.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440477/ERR1440477_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440477/ERR1440477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440477/PHESPV1692.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440477/PHESPV1692.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93415380;94346002 ERS1195856 ERX1510855 GENOMIC 289805969 2016-06-10 PHESPV1692 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440477/PHESPV1692.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440477/PHESPV1692.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440477 PHESPV1692 ERR1440590 PHESPV1805 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440590 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440590 49850580000e4f2282ff52dfe931333e;108bfc5293f13e4287f1d7748de383fa 1313 160218153 382c0c21bf8f060d17bd7473697e37e8;dc2f91b499a97468563125dced8a5d15 SAMEA4024859 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440590/ERR1440590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440590/ERR1440590_2.fastq.gz 1760687 WGS PHESPV1805 RANDOM 115058805;118071572 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 927da6edf162f7971ab69d731c4cbf5f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440590/ERR1440590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440590/ERR1440590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440590/PHESPV1805.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440590/PHESPV1805.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440590/ERR1440590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440590/ERR1440590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440590/PHESPV1805.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440590/PHESPV1805.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110500425;113504382 ERS1195969 ERX1510968 GENOMIC 346973246 2016-06-10 PHESPV1805 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440590/PHESPV1805.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440590/PHESPV1805.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440590 PHESPV1805 ERR1440570 PHESPV1785 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440570 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440570 016f55051a57341d025fb14338ab6e95;c84c32ae7beff4122249f7a9e5ddd5b2 1313 181424436 a24789ebc65f4c588a4524d37aa6b67d;615e397e31179a44a81c1be3b10312f6 SAMEA4024839 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440570/ERR1440570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440570/ERR1440570_2.fastq.gz 2112047 WGS PHESPV1785 RANDOM 132129870;134949616 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eccfdddbf6117d60212aa1bdcfc2aecb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440570/ERR1440570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440570/ERR1440570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440570/PHESPV1785.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440570/PHESPV1785.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440570/ERR1440570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440570/ERR1440570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440570/PHESPV1785.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440570/PHESPV1785.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126817554;129573158 ERS1195949 ERX1510948 GENOMIC 417907446 2016-06-10 PHESPV1785 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440570/PHESPV1785.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440570/PHESPV1785.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440570 PHESPV1785 ERR1438916 PHESPV0126 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438916 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438916 b43d09ed38f8100599f0c39f007b7636;13c05bfe3f354c75adf745c785f00c0a 1313 178528146 cda15d151cfd17ea959617b987a684af;af655d9b9f1525bbd9a1f20ba086cdbf SAMEA4023185 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438916/ERR1438916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438916/ERR1438916_2.fastq.gz 1973599 WGS PHESPV0126 RANDOM 116643577;124002229 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac444ab7c811a3a30d8aa627d62cea01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438916/ERR1438916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438916/ERR1438916_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438916/PHESPV0126.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438916/PHESPV0126.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438916/ERR1438916_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438916/ERR1438916_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438916/PHESPV0126.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438916/PHESPV0126.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122950094;130248254 ERS1194295 ERX1509294 GENOMIC 390920449 2016-06-10 PHESPV0126 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438916/PHESPV0126.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438916/PHESPV0126.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438916 PHESPV0126 ERR1439776 PHESPV0987 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439776 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439776 991db6fd818c8d0038b322619cc8d517;fc451b51b64f761e686083bcb23e840b 1313 189832340 5afdd3da86324a561425a9c7c2a7a1b2;ad764b533d796e9810276a0fad2c8777 SAMEA4024045 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439776/ERR1439776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439776/ERR1439776_2.fastq.gz 2060760 WGS PHESPV0987 RANDOM 125675137;129082663 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b7525175d7aacab6d3d206716221415 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439776/ERR1439776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439776/ERR1439776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439776/PHESPV0987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439776/PHESPV0987.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439776/ERR1439776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439776/ERR1439776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439776/PHESPV0987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439776/PHESPV0987.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132299228;135578352 ERS1195155 ERX1510154 GENOMIC 407523218 2016-06-10 PHESPV0987 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439776/PHESPV0987.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439776/PHESPV0987.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439776 PHESPV0987 ERR1440019 PHESPV1230 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440019 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440019 b2d04b223f52f258963bba63e9ce3f6c;5df8934fcde613c9f65ef4ab3897ceb7 1313 145831262 7cbd39754efe640bcb19339e16bf0fb4;3690935de884dfa4a838ba2ca009d03e SAMEA4024288 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440019/ERR1440019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440019/ERR1440019_2.fastq.gz 1590636 WGS PHESPV1230 RANDOM 104953541;104875290 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 738a77cc20320617b102393fa9276fd3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440019/ERR1440019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440019/ERR1440019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440019/PHESPV1230.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440019/PHESPV1230.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440019/ERR1440019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440019/ERR1440019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440019/PHESPV1230.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440019/PHESPV1230.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100776107;100728369 ERS1195398 ERX1510397 GENOMIC 300524841 2016-06-10 PHESPV1230 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440019/PHESPV1230.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440019/PHESPV1230.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440019 PHESPV1230 ERR1438854 PHESPV0064 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438854 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438854 197e7d15987be3b10838002dcc77500c;37db290b826f9e8869bb1ef010bdd0b6 1313 84592843 d6ed73a21b7e1aeaf1ea78230100ac18;e1d020f44df637f9323c28df4aae58e1 SAMEA4023123 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438854/ERR1438854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438854/ERR1438854_2.fastq.gz 987197 WGS PHESPV0064 RANDOM 56121735;59315055 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 104e277cc3ae96aadeb68652d61f9667 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438854/ERR1438854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438854/ERR1438854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438854/PHESPV0064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438854/PHESPV0064.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438854/ERR1438854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438854/ERR1438854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438854/PHESPV0064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438854/PHESPV0064.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59564976;62719359 ERS1194233 ERX1509232 GENOMIC 196220323 2016-06-10 PHESPV0064 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438854/PHESPV0064.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438854/PHESPV0064.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438854 PHESPV0064 ERR1439035 PHESPV0246 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439035 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439035 adb4546e5a8e43319e82716b9300d03c;51285323f875a44a20fa4b1ddfa8e512 1313 87303725 05fc8f3a751f4f96bfbcca8cbb2eb967;8b5f3ceaf99efe27230cab6fccce789b SAMEA4023304 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439035/ERR1439035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439035/ERR1439035_2.fastq.gz 731112 WGS PHESPV0246 RANDOM 52566301;55629318 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c55839654336557554a7c67bb6488bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439035/ERR1439035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439035/ERR1439035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439035/PHESPV0246.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439035/PHESPV0246.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439035/ERR1439035_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439035/ERR1439035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439035/PHESPV0246.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439035/PHESPV0246.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55139973;58199883 ERS1194414 ERX1509413 GENOMIC 143021108 2016-06-10 PHESPV0246 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439035/PHESPV0246.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439035/PHESPV0246.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439035 PHESPV0246 ERR1440114 PHESPV1325 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440114 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440114 928c493d5fb2dc962cd909508435f0c2;687d44e17c6a51f675156272107dedca 1313 128324239 50026e9d21fe67f514f21fce87c53d74;2a19ae816f4569988e6352f4b1830d19 SAMEA4024383 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440114/ERR1440114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440114/ERR1440114_2.fastq.gz 1410740 WGS PHESPV1325 RANDOM 92516910;92215212 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ca33ba3bc20f8f71f2fbfe75aa45dd3f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440114/ERR1440114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440114/ERR1440114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440114/PHESPV1325.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440114/PHESPV1325.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440114/ERR1440114_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440114/ERR1440114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440114/PHESPV1325.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440114/PHESPV1325.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88903402;88634134 ERS1195493 ERX1510492 GENOMIC 265635915 2016-06-10 PHESPV1325 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440114/PHESPV1325.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440114/PHESPV1325.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440114 PHESPV1325 ERR1440197 PHESPV1411 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440197 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440197 1060892e1d602cd822586e0dc45268b7;7a836529a0de9013ddf1f1ebc7ece68c 1313 147300685 8b2e8e9634bbdf7e2dcd7993eaa6bd8c;e3505f111994e5c5a72ee50e0013091d SAMEA4024466 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440197/ERR1440197_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440197/ERR1440197_2.fastq.gz 1585905 WGS PHESPV1411 RANDOM 105038541;106278679 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4db0670a279eeea6dee19b4dfb018b3a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440197/ERR1440197_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440197/ERR1440197_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440197/PHESPV1411.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440197/PHESPV1411.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440197/ERR1440197_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440197/ERR1440197_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440197/PHESPV1411.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440197/PHESPV1411.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100864762;102131408 ERS1195576 ERX1510575 GENOMIC 299700741 2016-06-10 PHESPV1411 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440197/PHESPV1411.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440197/PHESPV1411.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440197 PHESPV1411 ERR1440210 PHESPV1424 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440210 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440210 b45fda606286e7c3d79f0aa385d7408e;cfd6753639316b8d03b6a9f214dc0218 1313 150031427 62af6b354844e77d36086679f4864e6f;f529bfaee27320ed0e70b24926251136 SAMEA4024479 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440210/ERR1440210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440210/ERR1440210_2.fastq.gz 1622219 WGS PHESPV1424 RANDOM 107929801;107715732 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a77b9aee89d02c14639c2ab7d8b60a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440210/ERR1440210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440210/ERR1440210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440210/PHESPV1424.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440210/PHESPV1424.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440210/ERR1440210_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440210/ERR1440210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440210/PHESPV1424.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440210/PHESPV1424.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103665980;103488517 ERS1195589 ERX1510588 GENOMIC 308497849 2016-06-10 PHESPV1424 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440210/PHESPV1424.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440210/PHESPV1424.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440210 PHESPV1424 ERR1440227 PHESPV1441 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440227 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440227 f2d6156f644881cab39cd03b37f8dbdc;4757707a182dfdc2971d5c249cf468a0 1313 119831948 0c003b68b082c07f446d5f0691ee8568;c5cb28a7ab738ef111993c9f85bd1f7d SAMEA4024496 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440227/ERR1440227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440227/ERR1440227_2.fastq.gz 1294659 WGS PHESPV1441 RANDOM 85784695;86263059 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0fa2aa59fa7f75b0f9bc46c21355a353 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440227/ERR1440227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440227/ERR1440227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440227/PHESPV1441.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440227/PHESPV1441.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440227/ERR1440227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440227/ERR1440227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440227/PHESPV1441.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440227/PHESPV1441.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82499047;82997688 ERS1195606 ERX1510605 GENOMIC 244730213 2016-06-10 PHESPV1441 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440227/PHESPV1441.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440227/PHESPV1441.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440227 PHESPV1441 ERR1440284 PHESPV1499 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440284 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440284 ce8df0c219a4102c0d4030086e1d422f;113bfa23e84f99f674ec4cd76a526e04 1313 137754176 00421e90fff40193b3341af86ea24a9d;4a62d0ecc3872ce6d90ab4e62f93de7d SAMEA4024553 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440284/ERR1440284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440284/ERR1440284_2.fastq.gz 1492087 WGS PHESPV1499 RANDOM 98626768;99206066 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f69035217c5e75a1a00daf8dff5a3983 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440284/ERR1440284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440284/ERR1440284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440284/PHESPV1499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440284/PHESPV1499.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440284/ERR1440284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440284/ERR1440284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440284/PHESPV1499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440284/PHESPV1499.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94726690;95327676 ERS1195663 ERX1510662 GENOMIC 281009303 2016-06-10 PHESPV1499 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440284/PHESPV1499.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440284/PHESPV1499.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440284 PHESPV1499 ERR1440322 PHESPV1537 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440322 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440322 538bb9cc99009bdbb7be3cafd0caba6b;af6b482c9b5c4f8774e60326a3d2ea40 1313 126360232 1f7abc6e74a47eceefb5a372f39477ef;d2920e735d5e70d2b7be9b610b70ba79 SAMEA4024591 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440322/ERR1440322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440322/ERR1440322_2.fastq.gz 1345049 WGS PHESPV1537 RANDOM 88579300;91934074 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c89f0d0877d3c5bacb5751141e4cd15d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440322/ERR1440322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440322/ERR1440322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440322/PHESPV1537.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440322/PHESPV1537.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440322/ERR1440322_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440322/ERR1440322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440322/PHESPV1537.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440322/PHESPV1537.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85162168;88528767 ERS1195701 ERX1510700 GENOMIC 253243904 2016-06-10 PHESPV1537 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440322/PHESPV1537.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440322/PHESPV1537.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440322 PHESPV1537 ERR1440331 PHESPV1546 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440331 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440331 d38734f6504ac4f3b1cdc9c716934bcc;b68b449ee8b3bba0154fe699e2b0f577 1313 113381883 53b2ac19e7bd649b111339aa5f9ecabc;cf76b880dae9f5e250b770d45568c0af SAMEA4024600 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440331/ERR1440331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440331/ERR1440331_2.fastq.gz 1315583 WGS PHESPV1546 RANDOM 80861447;85612957 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f84686ef47d49c354f16322cf6718232 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440331/ERR1440331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440331/ERR1440331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440331/PHESPV1546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440331/PHESPV1546.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440331/ERR1440331_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440331/ERR1440331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440331/PHESPV1546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440331/PHESPV1546.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77620084;82302745 ERS1195710 ERX1510709 GENOMIC 258454172 2016-06-10 PHESPV1546 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440331/PHESPV1546.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440331/PHESPV1546.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440331 PHESPV1546 ERR1440329 PHESPV1544 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440329 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440329 69b27316b4432d1fd4c18862a495d6ff;c18fe8e87bd917bc13925d1618f26f65 1313 140134633 997be4ed9db662345e114124abe7dd7b;db8e8d7e04fb97f4fe07c284a418063c SAMEA4024598 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440329/ERR1440329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440329/ERR1440329_2.fastq.gz 1613424 WGS PHESPV1544 RANDOM 99944328;105489883 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc8c3e5f249c1a629ace9334a03da746 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440329/ERR1440329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440329/ERR1440329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440329/PHESPV1544.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440329/PHESPV1544.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440329/ERR1440329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440329/ERR1440329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440329/PHESPV1544.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440329/PHESPV1544.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95847553;101325187 ERS1195708 ERX1510707 GENOMIC 316708416 2016-06-10 PHESPV1544 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440329/PHESPV1544.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440329/PHESPV1544.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440329 PHESPV1544 ERR1440339 PHESPV1554 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440339 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440339 85601e1e60b04a8f6bd5990a42552562;514fff64a937906801b381e407db2c76 1313 110621325 b2c124230baefd0ea5669888fa596a87;1dd3bdef72d89d385717ae99f7e5833e SAMEA4024608 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440339/ERR1440339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440339/ERR1440339_2.fastq.gz 1207945 WGS PHESPV1554 RANDOM 74087176;75248739 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline abb484f63bf1e7577f09b9af577f2463 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440339/ERR1440339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440339/ERR1440339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440339/PHESPV1554.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440339/PHESPV1554.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440339/ERR1440339_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440339/ERR1440339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440339/PHESPV1554.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440339/PHESPV1554.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78214453;79357512 ERS1195718 ERX1510717 GENOMIC 238956385 2016-06-10 PHESPV1554 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440339/PHESPV1554.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440339/PHESPV1554.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440339 PHESPV1554 ERR1440350 PHESPV1565 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440350 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440350 7dc16455a94859f69b0705263488d39f;d31c6b16878875b45510a8aaf6f941f6 1313 235118352 73c1841ed3d93d73078a3ac2f08a8596;c045eda9aa013bdabcd489c73bd1e3c6 SAMEA4024619 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440350/ERR1440350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440350/ERR1440350_2.fastq.gz 2615740 WGS PHESPV1565 RANDOM 154879974;160757582 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f078d423c70f9dfe53a3b06acdef785d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440350/ERR1440350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440350/ERR1440350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440350/PHESPV1565.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440350/PHESPV1565.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440350/ERR1440350_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440350/ERR1440350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440350/PHESPV1565.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440350/PHESPV1565.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 162817742;168617048 ERS1195729 ERX1510728 GENOMIC 517055902 2016-06-10 PHESPV1565 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440350/PHESPV1565.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440350/PHESPV1565.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440350 PHESPV1565 ERR1440383 PHESPV1598 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440383 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440383 1c5c1cafa98a8d25dd8dace2e10b853a;b4db678f10536519fb0ca2b9e68b52b8 1313 180693745 b37a1f6a33a4219d4bdd14c69e592e16;7b043b64f7a03c1051fcb3b00c5b7760 SAMEA4024652 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440383/ERR1440383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440383/ERR1440383_2.fastq.gz 2069094 WGS PHESPV1598 RANDOM 128135753;136367838 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 088a49ff58673ad32b9e8f115cb03349 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440383/ERR1440383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440383/ERR1440383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440383/PHESPV1598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440383/PHESPV1598.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440383/ERR1440383_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440383/ERR1440383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440383/PHESPV1598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440383/PHESPV1598.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122897732;131068332 ERS1195762 ERX1510761 GENOMIC 408083023 2016-06-10 PHESPV1598 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440383/PHESPV1598.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440383/PHESPV1598.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440383 PHESPV1598 ERR1440451 PHESPV1666 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440451 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440451 5968a7c070e9b95c450e05ef53fad948;674552bd87e78e40c7b8282051a2b0cb 1313 131675608 aee5a35c23e77a037b045cebdc79c48e;eae5300fd3723ad7488fc994e2523211 SAMEA4024720 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440451/ERR1440451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440451/ERR1440451_2.fastq.gz 1455278 WGS PHESPV1666 RANDOM 94861222;95524618 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c3112b74237ca6bd4b73230fefae39d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440451/ERR1440451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440451/ERR1440451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440451/PHESPV1666.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440451/PHESPV1666.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440451/ERR1440451_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440451/ERR1440451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440451/PHESPV1666.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440451/PHESPV1666.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91159693;91838984 ERS1195830 ERX1510829 GENOMIC 282859974 2016-06-10 PHESPV1666 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440451/PHESPV1666.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440451/PHESPV1666.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440451 PHESPV1666 ERR1440384 PHESPV1599 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440384 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440384 c25b12fabfc6208f1e5d9909d6fd9595;fd61a048c1c4bda30832d08e9511f844 1313 162470379 a6967e8dee4aca461b1a99cc082a6387;0c004d0c38a4486e2d9ddcae7ae5006d SAMEA4024653 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440384/ERR1440384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440384/ERR1440384_2.fastq.gz 1872445 WGS PHESPV1599 RANDOM 114737174;123253823 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b74b598d0ac84ad585e1d2bf6d770968 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440384/ERR1440384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440384/ERR1440384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440384/PHESPV1599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440384/PHESPV1599.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440384/ERR1440384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440384/ERR1440384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440384/PHESPV1599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440384/PHESPV1599.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109958378;118398699 ERS1195763 ERX1510762 GENOMIC 367847098 2016-06-10 PHESPV1599 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440384/PHESPV1599.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440384/PHESPV1599.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440384 PHESPV1599 ERR1440480 PHESPV1695 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440480 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440480 c145d45c38cda99b5f14cb561386b5a1;9477d29d7d68ae402efbe678cf03446d 1313 158706918 8571f1bd53a0a4708144ed62be025cb7;cbb7fd919dc9a65f18d598bba14a8d9c SAMEA4024749 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440480/ERR1440480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440480/ERR1440480_2.fastq.gz 1760324 WGS PHESPV1695 RANDOM 114673891;115049496 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a8e24c8c4ff824cb782fa1f08fcd89fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440480/ERR1440480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440480/ERR1440480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440480/PHESPV1695.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440480/PHESPV1695.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440480/ERR1440480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440480/ERR1440480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440480/PHESPV1695.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440480/PHESPV1695.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110070361;110465956 ERS1195859 ERX1510858 GENOMIC 342280696 2016-06-10 PHESPV1695 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440480/PHESPV1695.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440480/PHESPV1695.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440480 PHESPV1695 ERR1440858 PHESPV2073 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440858 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440858 157cbc314be9cad8043650f5c9fcd9c3;b4626b2faa3e96ca69b1030d582110df 1313 438813069 aaece9468addc7c567022de04d4cfa17;89c009794c933cc0ee824b91aec886cd SAMEA4025127 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440858/ERR1440858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440858/ERR1440858_2.fastq.gz 4898387 WGS PHESPV2073 RANDOM 312205993;325481484 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 956502cd67d89beaa2e97649ba66255e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440858/ERR1440858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440858/ERR1440858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440858/PHESPV2073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440858/PHESPV2073.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440858/ERR1440858_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440858/ERR1440858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440858/PHESPV2073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440858/PHESPV2073.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 298324169;311630608 ERS1196237 ERX1511236 GENOMIC 962730779 2016-06-10 PHESPV2073 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440858/PHESPV2073.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440858/PHESPV2073.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440858 PHESPV2073 ERR1440859 PHESPV2074 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440859 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440859 6a42ada000d0b0261bc97ba643b573ff;f5b660be6ca16307a8f69b6bbd2297b3 1313 284176809 e1a0c1b111651ab410169ec1a9f123ba;cc97bc5c2736a767016548b6ba37cdd3 SAMEA4025128 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440859/ERR1440859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440859/ERR1440859_2.fastq.gz 3251831 WGS PHESPV2074 RANDOM 206375890;208957818 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 324365298ca36cc03fb8819335b95476 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440859/ERR1440859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440859/ERR1440859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440859/PHESPV2074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440859/PHESPV2074.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440859/ERR1440859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440859/ERR1440859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440859/PHESPV2074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440859/PHESPV2074.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 197677642;200272136 ERS1196238 ERX1511237 GENOMIC 637769015 2016-06-10 PHESPV2074 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440859/PHESPV2074.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440859/PHESPV2074.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440859 PHESPV2074 ERR1438861 PHESPV0071 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438861 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438861 574629f9b7e8884e24a72cb0162f414d;c4e3434c685ede89927b648cca3f23d6 1313 110731849 534ce9b70b6cd3dd331b4fcf3410fe50;547b379a91acd2729ed8a491852d7fc2 SAMEA4023130 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438861/ERR1438861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438861/ERR1438861_2.fastq.gz 1304922 WGS PHESPV0071 RANDOM 74234478;77079597 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a4a2a738cd47f0ed36212d50966ef476 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438861/ERR1438861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438861/ERR1438861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438861/PHESPV0071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438861/PHESPV0071.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438861/ERR1438861_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438861/ERR1438861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438861/PHESPV0071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438861/PHESPV0071.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78639161;81433251 ERS1194240 ERX1509239 GENOMIC 259147036 2016-06-10 PHESPV0071 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438861/PHESPV0071.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438861/PHESPV0071.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438861 PHESPV0071 ERR1439217 PHESPV0428 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439217 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439217 75371457276734a20fc27b33ec0a8d8a;81b462151c22084a200ed82fbc68fda6 1313 114763208 e83f34e378944403eaf36f4516d35f71;d717d529824fb17c89764ddaab418e7c SAMEA4023486 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439217/ERR1439217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439217/ERR1439217_2.fastq.gz 1254560 WGS PHESPV0428 RANDOM 83384410;82310245 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f55a10de76509bf888153f69dc5634ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439217/ERR1439217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439217/ERR1439217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439217/PHESPV0428.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439217/PHESPV0428.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439217/ERR1439217_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439217/ERR1439217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439217/PHESPV0428.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439217/PHESPV0428.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80224577;79163104 ERS1194596 ERX1509595 GENOMIC 243444845 2016-06-10 PHESPV0428 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439217/PHESPV0428.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439217/PHESPV0428.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439217 PHESPV0428 ERR1439383 PHESPV0594 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439383 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439383 9f9446110466f67e319c8f71f5da420b;47337d79756b9ee6358506271894eb9a 1313 102447575 cfc1024fd5dd924b8f6d013c7995f76f;b524aff82136eeccb1f9b8e951fc038f SAMEA4023652 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439383/ERR1439383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439383/ERR1439383_2.fastq.gz 1141266 WGS PHESPV0594 RANDOM 74563236;74292376 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 02d33d394b353d8686bfda3d0760c0b3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439383/ERR1439383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439383/ERR1439383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439383/PHESPV0594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439383/PHESPV0594.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439383/ERR1439383_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439383/ERR1439383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439383/PHESPV0594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439383/PHESPV0594.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71688873;71440356 ERS1194762 ERX1509761 GENOMIC 223387085 2016-06-10 PHESPV0594 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439383/PHESPV0594.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439383/PHESPV0594.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439383 PHESPV0594 ERR1439341 PHESPV0552 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439341 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439341 ed786f2d8d9fbc465df5b8e6e05e0579;f60f332b96dc9b7132e180243d3ef49a 1313 114337190 e12c218f55b635db2ad3cf03efcccad5;84073be0440efc2dda89b3043ebc5aba SAMEA4023610 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439341/ERR1439341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439341/ERR1439341_2.fastq.gz 1268198 WGS PHESPV0552 RANDOM 82303297;83212113 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90c89b6e263e48e9c4c7e6b52d153d90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439341/ERR1439341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439341/ERR1439341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439341/PHESPV0552.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439341/PHESPV0552.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439341/ERR1439341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439341/ERR1439341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439341/PHESPV0552.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439341/PHESPV0552.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79108927;80032479 ERS1194720 ERX1509719 GENOMIC 246421062 2016-06-10 PHESPV0552 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439341/PHESPV0552.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439341/PHESPV0552.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439341 PHESPV0552 ERR1439396 PHESPV0607 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439396 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439396 acfdea3d2256126042c03eb6899ee413;e0867e619c39650420163ff6d0d09340 1313 93503299 297ddd53d33371956ec60ade50e5114e;fe73fc3c2bfda9ba17c23de57dfa5771 SAMEA4023665 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439396/ERR1439396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439396/ERR1439396_2.fastq.gz 1038032 WGS PHESPV0607 RANDOM 67446016;68034463 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eb5f0b55551effa846e7fafdafc7ebe0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439396/ERR1439396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439396/ERR1439396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439396/PHESPV0607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439396/PHESPV0607.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439396/ERR1439396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439396/ERR1439396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439396/PHESPV0607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439396/PHESPV0607.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64800965;65403932 ERS1194775 ERX1509774 GENOMIC 200565571 2016-06-10 PHESPV0607 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439396/PHESPV0607.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439396/PHESPV0607.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439396 PHESPV0607 ERR1439426 PHESPV0637 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439426 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439426 72a3579c935893ba1e198470513a1f1a;96bcac6d801ac203b9f35ad262b4dbfc 1313 144647482 84d7429f81782fb37aab983413f9f9aa;02e3b557b677bbe17f480abd5ba7be0e SAMEA4023695 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439426/ERR1439426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439426/ERR1439426_2.fastq.gz 1611929 WGS PHESPV0637 RANDOM 94931608;97184228 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c2db4d5ee3a76f62c759211e433119e3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439426/ERR1439426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439426/ERR1439426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439426/PHESPV0637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439426/PHESPV0637.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439426/ERR1439426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439426/ERR1439426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439426/PHESPV0637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439426/PHESPV0637.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100194780;102406750 ERS1194805 ERX1509804 GENOMIC 318489740 2016-06-10 PHESPV0637 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439426/PHESPV0637.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439426/PHESPV0637.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439426 PHESPV0637 ERR1439428 PHESPV0639 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439428 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439428 05e59c1948aeaaca227da57ffb9140c6;638de14e139a8aaf2d10c822e7d5fb98 1313 171693910 7886beb04014e9d2397d1484f982906b;0c6d26dc5407c85ee19ab6de1ef6487e SAMEA4023697 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439428/ERR1439428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439428/ERR1439428_2.fastq.gz 2118697 WGS PHESPV0639 RANDOM 114485379;121549391 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0113f4780fe21d8586fc43eb1fe4525a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439428/ERR1439428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439428/ERR1439428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439428/PHESPV0639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439428/PHESPV0639.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439428/ERR1439428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439428/ERR1439428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439428/PHESPV0639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439428/PHESPV0639.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121229332;128257301 ERS1194807 ERX1509806 GENOMIC 414112729 2016-06-10 PHESPV0639 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439428/PHESPV0639.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439428/PHESPV0639.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439428 PHESPV0639 ERR1439598 PHESPV0809 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439598 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439598 9cc7ffc069d39d34a20ce65d21c1132c;bcc1a4191f5821de0290d7910d7f811c 1313 192529063 546b24504164fd7a1af64008e61d2176;2e3e228eaffd3401975e4758e9f74d9a SAMEA4023867 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439598/ERR1439598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439598/ERR1439598_2.fastq.gz 2143053 WGS PHESPV0809 RANDOM 124502314;126948377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1f77409fb6a94acb3bca8745b3887b0b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439598/ERR1439598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439598/ERR1439598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439598/PHESPV0809.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439598/PHESPV0809.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439598/ERR1439598_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439598/ERR1439598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439598/PHESPV0809.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439598/PHESPV0809.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131092159;133486958 ERS1194977 ERX1509976 GENOMIC 422246757 2016-06-10 PHESPV0809 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439598/PHESPV0809.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439598/PHESPV0809.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439598 PHESPV0809 ERR1439610 PHESPV0821 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439610 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439610 d0c2566806efaaed83a896e8496991cb;ca08e9d189f6098b90e1d8a9d46539ab 1313 116570109 da689e6697fe0decb08560d0b5ed20f7;afc01b227bb6fd5736a79697af1f46a3 SAMEA4023879 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439610/ERR1439610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439610/ERR1439610_2.fastq.gz 1249903 WGS PHESPV0821 RANDOM 83835997;83914145 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dda03c7f86e64131b3aaf8e95874aebf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439610/ERR1439610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439610/ERR1439610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439610/PHESPV0821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439610/PHESPV0821.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439610/ERR1439610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439610/ERR1439610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439610/PHESPV0821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439610/PHESPV0821.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80715205;80804621 ERS1194989 ERX1509988 GENOMIC 240789777 2016-06-10 PHESPV0821 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439610/PHESPV0821.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439610/PHESPV0821.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439610 PHESPV0821 ERR1439620 PHESPV0831 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439620 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439620 468caadfcdc5fd41ea80c891d622a0d2;b698dfa137d3fe531214d0b4a342c689 1313 182937948 72c976e0abe564a2e894bc96375d600c;a409739fbacc5ac6dc3a6ec8e975cfa1 SAMEA4023889 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439620/ERR1439620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439620/ERR1439620_2.fastq.gz 2008587 WGS PHESPV0831 RANDOM 116883543;122118855 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ef51a06361a7ba607db44b743bc2327 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439620/ERR1439620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439620/ERR1439620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439620/PHESPV0831.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439620/PHESPV0831.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439620/ERR1439620_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439620/ERR1439620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439620/PHESPV0831.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439620/PHESPV0831.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123122436;128244419 ERS1194999 ERX1509998 GENOMIC 395132598 2016-06-10 PHESPV0831 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439620/PHESPV0831.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439620/PHESPV0831.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439620 PHESPV0831 ERR1440096 PHESPV1307 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440096 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440096 028436c39a9acd249457c72a0ee0c287;58825c2d209c790e982a157b89446d75 1313 171875558 440deac2d4fd27d04c1a6c1ee622cb35;056249909a572d47a61360a0439742dc SAMEA4024365 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440096/ERR1440096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440096/ERR1440096_2.fastq.gz 1881830 WGS PHESPV1307 RANDOM 123738718;123587945 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 203d583df884829772e6f5ccf6a1e793 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440096/ERR1440096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440096/ERR1440096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440096/PHESPV1307.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440096/PHESPV1307.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440096/ERR1440096_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440096/ERR1440096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440096/PHESPV1307.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440096/PHESPV1307.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118765408;118642416 ERS1195475 ERX1510474 GENOMIC 355305991 2016-06-10 PHESPV1307 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440096/PHESPV1307.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440096/PHESPV1307.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440096 PHESPV1307 ERR1440235 PHESPV1449 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440235 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440235 da143d68cfc6d2a46a7ee423f9de292a;719919c8ebbe6559569d42117fe147ae 1313 161432901 8cfc49ee83e31119b5c62671032fc394;218a8d07eaa6996002b347920da84fb2 SAMEA4024504 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440235/ERR1440235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440235/ERR1440235_2.fastq.gz 1739495 WGS PHESPV1449 RANDOM 106120812;110654015 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c8e82f64c6c51bef2662b6aec6b8c16e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440235/ERR1440235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440235/ERR1440235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440235/PHESPV1449.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440235/PHESPV1449.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440235/ERR1440235_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440235/ERR1440235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440235/PHESPV1449.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440235/PHESPV1449.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111813524;116271101 ERS1195614 ERX1510613 GENOMIC 343175197 2016-06-10 PHESPV1449 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440235/PHESPV1449.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440235/PHESPV1449.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440235 PHESPV1449 ERR1440315 PHESPV1530 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440315 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440315 f1bdb14080cf5f0df58285347b23a0c5;2b71a637203f900120ee4429c209bba4 1313 182624433 f94ef8d83ac66fcf85b8499d241da3af;c57dd975386a4add21d49b980821c41f SAMEA4024584 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440315/ERR1440315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440315/ERR1440315_2.fastq.gz 2138059 WGS PHESPV1530 RANDOM 131936025;136667780 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50a433e18a80a0ccec1993e538379cf3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440315/ERR1440315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440315/ERR1440315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440315/PHESPV1530.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440315/PHESPV1530.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440315/ERR1440315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440315/ERR1440315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440315/PHESPV1530.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440315/PHESPV1530.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126537211;131229726 ERS1195694 ERX1510693 GENOMIC 421012415 2016-06-10 PHESPV1530 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440315/PHESPV1530.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440315/PHESPV1530.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440315 PHESPV1530 ERR1440358 PHESPV1573 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440358 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440358 44333097d0b3349c524b4123a0e1d0d4;0a6b3c858b686e3362c3ceb826a953fd 1313 168430713 bc53bfad07cccbbebfb39de509f75c88;cf137250db42548451ec94fe89cd3887 SAMEA4024627 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440358/ERR1440358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440358/ERR1440358_2.fastq.gz 1957177 WGS PHESPV1573 RANDOM 120774785;126997024 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline af05da0475383fd9a318a15247fe652c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440358/ERR1440358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440358/ERR1440358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440358/PHESPV1573.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440358/PHESPV1573.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440358/ERR1440358_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440358/ERR1440358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440358/PHESPV1573.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440358/PHESPV1573.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115776922;121954907 ERS1195737 ERX1510736 GENOMIC 386483685 2016-06-10 PHESPV1573 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440358/PHESPV1573.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440358/PHESPV1573.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440358 PHESPV1573 ERR1440471 PHESPV1686 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440471 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440471 f27150e84df841743c42308097c55c7e;e95a20088d0c645df81991ea9b95b814 1313 124041415 6d1b680e1504b8ea713a507c4eec8975;f0e266ffb6680bf9a203f261e87a569b SAMEA4024740 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440471/ERR1440471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440471/ERR1440471_2.fastq.gz 1338861 WGS PHESPV1686 RANDOM 88985315;89207707 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 35dfb35c4c73bec411960b434ef1574a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440471/ERR1440471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440471/ERR1440471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440471/PHESPV1686.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440471/PHESPV1686.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440471/ERR1440471_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440471/ERR1440471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440471/PHESPV1686.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440471/PHESPV1686.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85599247;85844025 ERS1195850 ERX1510849 GENOMIC 254078128 2016-06-10 PHESPV1686 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440471/PHESPV1686.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440471/PHESPV1686.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440471 PHESPV1686 ERR1440613 PHESPV1828 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440613 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440613 38c63b8d2d17ce7d24daa8e05ba615c1;34c5f745729836a8ff70f56af294092d 1313 66824871 eb06f8a7819e3110fe129ffc0fc40fd7;19007cdc52227eb2cbd67b134f2eb46b SAMEA4024882 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440613/ERR1440613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440613/ERR1440613_2.fastq.gz 753511 WGS PHESPV1828 RANDOM 47480135;49899142 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 738a0a8d6d2f03d000d928c06f82b1d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440613/ERR1440613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440613/ERR1440613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440613/PHESPV1828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440613/PHESPV1828.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440613/ERR1440613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440613/ERR1440613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440613/PHESPV1828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440613/PHESPV1828.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 45608969;47988323 ERS1195992 ERX1510991 GENOMIC 147315029 2016-06-10 PHESPV1828 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440613/PHESPV1828.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440613/PHESPV1828.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440613 PHESPV1828 ERR1440616 PHESPV1831 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440616 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440616 2c3a3f3e00addc2c3673a6df43d95772;c19ab6509d1fbe5c1ef118184c55beb1 1313 137741204 4efe5481dc39af9b77e98a5645dd7d80;3cacb88de526ebcc6cb4680f69e42701 SAMEA4024885 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440616/ERR1440616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440616/ERR1440616_2.fastq.gz 1562441 WGS PHESPV1831 RANDOM 96831077;103207507 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ee0b7a725ed554645e4b48a497648da ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440616/ERR1440616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440616/ERR1440616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440616/PHESPV1831.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440616/PHESPV1831.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440616/ERR1440616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440616/ERR1440616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440616/PHESPV1831.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440616/PHESPV1831.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92807715;99118607 ERS1195995 ERX1510994 GENOMIC 302774398 2016-06-10 PHESPV1831 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440616/PHESPV1831.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440616/PHESPV1831.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440616 PHESPV1831 ERR1440631 PHESPV1846 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440631 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440631 6722a8d56842c30985a4a48c7509196c;6ed11c55df26b87c0f9f4acfd65fe13f 1313 74337220 81ba3294dd63420b5c11ac9f6cd6739e;2d9ea76fd63f915024df54831885aa03 SAMEA4024900 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440631/ERR1440631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440631/ERR1440631_2.fastq.gz 846617 WGS PHESPV1846 RANDOM 52922342;55430136 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 527a5bfa2b7695600cb879a96fb81312 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440631/ERR1440631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440631/ERR1440631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440631/PHESPV1846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440631/PHESPV1846.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440631/ERR1440631_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440631/ERR1440631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440631/PHESPV1846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440631/PHESPV1846.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50817259;53284992 ERS1196010 ERX1511009 GENOMIC 164098965 2016-06-10 PHESPV1846 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440631/PHESPV1846.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440631/PHESPV1846.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440631 PHESPV1846 ERR1440625 PHESPV1840 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440625 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440625 3c071e84c55f342a7cb4bacce0840c88;55196bfed9b88140738a5e990a209c70 1313 100392227 c3a6e89a103588ccb13c63a3d1790468;520858174d0e496f367dfb0a8f8c54a2 SAMEA4024894 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440625/ERR1440625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440625/ERR1440625_2.fastq.gz 1149638 WGS PHESPV1840 RANDOM 71875741;74526274 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 70c21871c3750ef9e21c00d1039b7006 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440625/ERR1440625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440625/ERR1440625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440625/PHESPV1840.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440625/PHESPV1840.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440625/ERR1440625_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440625/ERR1440625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440625/PHESPV1840.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440625/PHESPV1840.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69012591;71624223 ERS1196004 ERX1511003 GENOMIC 223616969 2016-06-10 PHESPV1840 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440625/PHESPV1840.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440625/PHESPV1840.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440625 PHESPV1840 ERR1440636 PHESPV1851 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440636 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440636 994cd1af686d5da892a9f02c2c733d48;e52d0b861d4517fcda904b0865186530 1313 117679636 3bf14207f1b723859eac14163d1b3cf2;e4a3bb8f44b9e380717cd3c67707213d SAMEA4024905 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440636/ERR1440636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440636/ERR1440636_2.fastq.gz 1339651 WGS PHESPV1851 RANDOM 84283114;87239733 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9fb5de45566b84573428a5c1776d48e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440636/ERR1440636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440636/ERR1440636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440636/PHESPV1851.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440636/PHESPV1851.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440636/ERR1440636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440636/ERR1440636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440636/PHESPV1851.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440636/PHESPV1851.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80942290;83858234 ERS1196015 ERX1511014 GENOMIC 262256577 2016-06-10 PHESPV1851 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440636/PHESPV1851.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440636/PHESPV1851.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440636 PHESPV1851 ERR1440662 PHESPV1877 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440662 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440662 f753c100131a72f9670bcb5e11d1d54c;cc9847b7abd34f567d3246db19c9b317 1313 48428059 89e9a3d36b82e1657634ec6590aee57c;438d77bb8465e82630a36e8f66b49952 SAMEA4024931 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440662/ERR1440662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440662/ERR1440662_2.fastq.gz 551008 WGS PHESPV1877 RANDOM 34379448;36286897 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ca70d49af357218d79709b6f76118ebf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440662/ERR1440662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440662/ERR1440662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440662/PHESPV1877.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440662/PHESPV1877.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440662/ERR1440662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440662/ERR1440662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440662/PHESPV1877.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440662/PHESPV1877.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 33024187;34895089 ERS1196041 ERX1511040 GENOMIC 107088628 2016-06-10 PHESPV1877 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440662/PHESPV1877.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440662/PHESPV1877.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440662 PHESPV1877 ERR1440639 PHESPV1854 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440639 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440639 28358245212ce7256cd8ef1e41308748;a6af9e264ea197f2fa930228075d902f 1313 110904050 e1a6107daceb6e97ddad0e721cb78d4b;9ebe872beb6c66e32ff5fc63cf81a852 SAMEA4024908 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440639/ERR1440639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440639/ERR1440639_2.fastq.gz 1254428 WGS PHESPV1854 RANDOM 79235187;82237881 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d709e51f31f26f708693280ebc19ee7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440639/ERR1440639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440639/ERR1440639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440639/PHESPV1854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440639/PHESPV1854.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440639/ERR1440639_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440639/ERR1440639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440639/PHESPV1854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440639/PHESPV1854.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76118644;79082318 ERS1196018 ERX1511017 GENOMIC 245711553 2016-06-10 PHESPV1854 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440639/PHESPV1854.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440639/PHESPV1854.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440639 PHESPV1854 ERR1440664 PHESPV1879 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440664 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440664 177367579187783146e6ded08db22b35;d53837a370fb59f2ec74b5f28425222f 1313 88204715 c306ef8b5d0fa24c16c17d5736c848c9;4eae619bc9ca4bb384fe9a32c7da0935 SAMEA4024933 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440664/ERR1440664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440664/ERR1440664_2.fastq.gz 1011387 WGS PHESPV1879 RANDOM 62996930;65878888 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed56aa55f9174d07254527b18b765e5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440664/ERR1440664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440664/ERR1440664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440664/PHESPV1879.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440664/PHESPV1879.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440664/ERR1440664_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440664/ERR1440664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440664/PHESPV1879.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440664/PHESPV1879.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60473234;63306247 ERS1196043 ERX1511042 GENOMIC 197518716 2016-06-10 PHESPV1879 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440664/PHESPV1879.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440664/PHESPV1879.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440664 PHESPV1879 ERR1440694 PHESPV1909 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440694 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440694 d0a35ab616d93af136c0027388b95c0c;d9f5a62fb6d51612044bc919bc196505 1313 120124447 65ab9713f5c1c4ac0641a99c8507c029;174def1a3d7ece36555079c9f666132c SAMEA4024963 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440694/ERR1440694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440694/ERR1440694_2.fastq.gz 1302862 WGS PHESPV1909 RANDOM 85816979;85939479 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eb2f715377aa391c01b33c534af7cca7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440694/ERR1440694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440694/ERR1440694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440694/PHESPV1909.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440694/PHESPV1909.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440694/ERR1440694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440694/ERR1440694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440694/PHESPV1909.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440694/PHESPV1909.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82439894;82559765 ERS1196073 ERX1511072 GENOMIC 253407409 2016-06-10 PHESPV1909 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440694/PHESPV1909.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440694/PHESPV1909.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440694 PHESPV1909 ERR1438994 PHESPV0205 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438994 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438994 a470798e37bd7ede0568f6a2d536936f;7a80ba7598d8248a822790c8840986b8 1313 148805466 ad97f2d6dc193ae075a1036ea7a48cea;fafdd74d04c6f26da07e63d826dfa1dd SAMEA4023263 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438994/ERR1438994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438994/ERR1438994_2.fastq.gz 1656587 WGS PHESPV0205 RANDOM 97932185;102171926 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9bf94ca9a286e3cbcc198dcf0c4a926 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438994/ERR1438994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438994/ERR1438994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438994/PHESPV0205.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438994/PHESPV0205.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438994/ERR1438994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438994/ERR1438994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438994/PHESPV0205.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438994/PHESPV0205.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103385926;107559344 ERS1194373 ERX1509372 GENOMIC 327869078 2016-06-10 PHESPV0205 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438994/PHESPV0205.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438994/PHESPV0205.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438994 PHESPV0205 ERR1438999 PHESPV0210 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438999 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438999 e0191afa7423b5f4bd7df27752272437;9fd876f0c6e3ae4b38ad88dcbe5f7279 1313 171417900 cd1aee24913841cfd680492b97ddc24b;7871488c933ed7c0bde1445f8b0f9ddd SAMEA4023268 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438999/ERR1438999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438999/ERR1438999_2.fastq.gz 1941510 WGS PHESPV0210 RANDOM 114892115;116994303 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fb9b7b2688930ddf3383ac7a6bc46156 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438999/ERR1438999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438999/ERR1438999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438999/PHESPV0210.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438999/PHESPV0210.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438999/ERR1438999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438999/ERR1438999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438999/PHESPV0210.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438999/PHESPV0210.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121121235;123189215 ERS1194378 ERX1509377 GENOMIC 385129503 2016-06-10 PHESPV0210 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438999/PHESPV0210.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438999/PHESPV0210.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438999 PHESPV0210 ERR1438997 PHESPV0208 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438997 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438997 46bcaae4bc8df4a27b04ba382e2ade66;56c4e9170387af71b8c6310dbf6ef23f 1313 132080470 e088cc34c04c513072896da5a6a49ad6;496582eac9989e1fdc607a8dd37677f3 SAMEA4023266 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438997/ERR1438997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438997/ERR1438997_2.fastq.gz 1499486 WGS PHESPV0208 RANDOM 88683935;90353507 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 518da46bcd05d01f76cecbeb0babce32 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438997/ERR1438997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438997/ERR1438997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438997/PHESPV0208.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438997/PHESPV0208.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438997/ERR1438997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438997/ERR1438997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438997/PHESPV0208.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438997/PHESPV0208.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93693199;95336199 ERS1194376 ERX1509375 GENOMIC 297480106 2016-06-10 PHESPV0208 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438997/PHESPV0208.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438997/PHESPV0208.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438997 PHESPV0208 ERR1438991 PHESPV0202 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438991 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438991 1c3a2826d35b9f24fcb69832a1fd4de6;659c3e40bf8d7f6853c4b2f6082505f6 1313 129267693 e2c191f55fa5985e894fe4a0b71d4007;ecd690ba3066ae46c8806336e5c617e3 SAMEA4023260 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438991/ERR1438991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438991/ERR1438991_2.fastq.gz 1466632 WGS PHESPV0202 RANDOM 86741089;88556253 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 428eee81fda7410d1a17504eccd76877 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438991/ERR1438991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438991/ERR1438991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438991/PHESPV0202.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438991/PHESPV0202.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438991/ERR1438991_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438991/ERR1438991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438991/PHESPV0202.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438991/PHESPV0202.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91636909;93420803 ERS1194370 ERX1509369 GENOMIC 291000842 2016-06-10 PHESPV0202 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438991/PHESPV0202.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438991/PHESPV0202.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438991 PHESPV0202 ERR1438984 PHESPV0195 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438984 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438984 651db5b621e96fa4a8745573d58c8053;90d6183ce12d4a0191fdb51b2be1a087 1313 179725270 60fce32d372fdf1de6aa8eba0750035e;fd34cf4ac3f7f2505a5ce74c0545b0c5 SAMEA4023253 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438984/ERR1438984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438984/ERR1438984_2.fastq.gz 2014869 WGS PHESPV0195 RANDOM 119357703;123103347 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e262590dcc109f79eb801ce7afea4b6d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438984/ERR1438984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438984/ERR1438984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438984/PHESPV0195.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438984/PHESPV0195.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438984/ERR1438984_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438984/ERR1438984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438984/PHESPV0195.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438984/PHESPV0195.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125767856;129464229 ERS1194363 ERX1509362 GENOMIC 399117374 2016-06-10 PHESPV0195 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438984/PHESPV0195.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438984/PHESPV0195.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438984 PHESPV0195 ERR1440333 PHESPV1548 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440333 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440333 cf8290cf5a76f5601d2ba6c2cf74a5d4;cdccad766e01a3d0be86b8242ec1e5c6 1313 134888306 5bd06428bc9810d8ab5e4d776598c79c;47900952f1c42d06ce1d9b4361dedaba SAMEA4024602 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440333/ERR1440333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440333/ERR1440333_2.fastq.gz 1458433 WGS PHESPV1548 RANDOM 89252740;92373561 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a624f169e11bb9d4f768f44e86a30f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440333/ERR1440333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440333/ERR1440333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440333/PHESPV1548.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440333/PHESPV1548.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440333/ERR1440333_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440333/ERR1440333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440333/PHESPV1548.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440333/PHESPV1548.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94090242;97151890 ERS1195712 ERX1510711 GENOMIC 287963693 2016-06-10 PHESPV1548 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440333/PHESPV1548.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440333/PHESPV1548.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440333 PHESPV1548 ERR1440700 PHESPV1915 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440700 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440700 038cddb61199999200dddfc23cd9aed1;267c67a65c20f619781ea9c0077f6022 1313 135596659 5beb7fadac38ad59aee159f60bbba369;425bad299dbd415a7bfe221b2a670bed SAMEA4024969 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440700/ERR1440700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440700/ERR1440700_2.fastq.gz 1471405 WGS PHESPV1915 RANDOM 96578760;97214583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 402d0ac629d7d23a0154d8fdfcdd61cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440700/ERR1440700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440700/ERR1440700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440700/PHESPV1915.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440700/PHESPV1915.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440700/ERR1440700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440700/ERR1440700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440700/PHESPV1915.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440700/PHESPV1915.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92753673;93387181 ERS1196079 ERX1511078 GENOMIC 285815730 2016-06-10 PHESPV1915 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440700/PHESPV1915.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440700/PHESPV1915.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440700 PHESPV1915 ERR1440679 PHESPV1894 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440679 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440679 60ab561aa53bd87693f33ea8976b82bd;591d47a18fa7cf312cbcc39329b31ae3 1313 124637670 fd7bd154847c64978c06399a281f412e;c496e2c3922505e4be0071fa68a71d3d SAMEA4024948 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440679/ERR1440679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440679/ERR1440679_2.fastq.gz 1331267 WGS PHESPV1894 RANDOM 88314976;89288888 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8e2305849b2291a4df9df18d129aa92a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440679/ERR1440679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440679/ERR1440679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440679/PHESPV1894.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440679/PHESPV1894.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440679/ERR1440679_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440679/ERR1440679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440679/PHESPV1894.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440679/PHESPV1894.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84845965;85811040 ERS1196058 ERX1511057 GENOMIC 258867018 2016-06-10 PHESPV1894 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440679/PHESPV1894.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440679/PHESPV1894.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440679 PHESPV1894 ERR1440673 PHESPV1888 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440673 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440673 faeacdbe049149fce0ae02320127ca66;6223d04ddc0aa4c1d8e5cfb4f34a7b86 1313 164243647 5b82a85383fe9e53c3b9ae8178e845f2;d8da82fe5eb4177c3c9284b48dbd7863 SAMEA4024942 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440673/ERR1440673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440673/ERR1440673_2.fastq.gz 1763089 WGS PHESPV1888 RANDOM 116458002;117533533 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b98be2a13357c9137a20e793040dc67a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440673/ERR1440673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440673/ERR1440673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440673/PHESPV1888.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440673/PHESPV1888.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440673/ERR1440673_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440673/ERR1440673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440673/PHESPV1888.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440673/PHESPV1888.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111786491;112856809 ERS1196052 ERX1511051 GENOMIC 342314129 2016-06-10 PHESPV1888 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440673/PHESPV1888.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440673/PHESPV1888.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440673 PHESPV1888 ERR1440777 PHESPV1992 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440777 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440777 a97a2a9e61dc2f2d10db6b6151af788a;324d92a9cf616d8d70bf18e491736c2a 1313 155105775 68485b5059e9b4594eb364578644613b;2cd9e706fbc319876a59ab49e4bfd5c4 SAMEA4025046 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440777/ERR1440777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440777/ERR1440777_2.fastq.gz 1745676 WGS PHESPV1992 RANDOM 112167123;113983529 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cb85fd18e121fc91c352b00b461a54c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440777/ERR1440777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440777/ERR1440777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440777/PHESPV1992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440777/PHESPV1992.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440777/ERR1440777_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440777/ERR1440777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440777/PHESPV1992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440777/PHESPV1992.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107635512;109451665 ERS1196156 ERX1511155 GENOMIC 342511848 2016-06-10 PHESPV1992 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440777/PHESPV1992.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440777/PHESPV1992.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440777 PHESPV1992 ERR1440786 PHESPV2001 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440786 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440786 0c87cf1738395f82ed672b23f9519f06;a36bdd552676b4d7dd4525bac3405753 1313 148986893 7aa8d84b31abdd59f004d5c7cebda5e6;8d2cd636d25ce6a2550556a2b6394ec6 SAMEA4025055 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440786/ERR1440786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440786/ERR1440786_2.fastq.gz 1681986 WGS PHESPV2001 RANDOM 108128264;109056165 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dec01b90025aa1473a164694af3b3f6e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440786/ERR1440786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440786/ERR1440786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440786/PHESPV2001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440786/PHESPV2001.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440786/ERR1440786_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440786/ERR1440786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440786/PHESPV2001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440786/PHESPV2001.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103739841;104668039 ERS1196165 ERX1511164 GENOMIC 328525363 2016-06-10 PHESPV2001 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440786/PHESPV2001.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440786/PHESPV2001.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440786 PHESPV2001 ERR1438810 PHESPV0020 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438810 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438810 44d3b4924993d3046201c4d49acb80e0;206b7498e1ebb6ed33b7a6704ffcddd0 1313 120495484 b7eeb0cbb9e0d862c95a8d49c74f3be9;cff9609d665f82f0bec4c92b590f0997 SAMEA4023079 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438810/ERR1438810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438810/ERR1438810_2.fastq.gz 1499407 WGS PHESPV0020 RANDOM 81074134;84180610 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 73ebc5f239448f0029c9523c39ed3ad2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438810/ERR1438810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438810/ERR1438810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438810/PHESPV0020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438810/PHESPV0020.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438810/ERR1438810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438810/ERR1438810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438810/PHESPV0020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438810/PHESPV0020.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86084781;89155401 ERS1194189 ERX1509188 GENOMIC 294054381 2016-06-10 PHESPV0020 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438810/PHESPV0020.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438810/PHESPV0020.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438810 PHESPV0020 ERR1440788 PHESPV2003 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440788 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440788 ec2dbd43bbbb284d73f0dd5207d0fbd9;1d3ac15bf4870b3252d684f7c3a43c1b 1313 147123386 6725bad41c694a1353022b97deb94147;1d9b8c897e0d591077b650f8dbdb347a SAMEA4025057 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440788/ERR1440788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440788/ERR1440788_2.fastq.gz 1665612 WGS PHESPV2003 RANDOM 106873941;107647244 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 629f98e0da1152908ba1b574a6be21ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440788/ERR1440788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440788/ERR1440788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440788/PHESPV2003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440788/PHESPV2003.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440788/ERR1440788_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440788/ERR1440788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440788/PHESPV2003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440788/PHESPV2003.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102479133;103247836 ERS1196167 ERX1511166 GENOMIC 324417733 2016-06-10 PHESPV2003 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440788/PHESPV2003.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440788/PHESPV2003.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440788 PHESPV2003 ERR1439579 PHESPV0790 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439579 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439579 1be81e81f1264d63d70b1a6ff69b046b;1fec9917fe7f5cf6903a6daa80f25887 1313 384188775 f36e948d3dbc6cb868b7a8bd3d28f8e4;b7267cbcce0d3f0ed3ab50f7bbf0e0b9 SAMEA4023848 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439579/ERR1439579_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439579/ERR1439579_2.fastq.gz 3049103 WGS PHESPV0790 RANDOM 237913034;240864254 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 735de9fdd1bae3ee6e116192faf1ad75 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439579/ERR1439579_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439579/ERR1439579_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439579/PHESPV0790.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439579/PHESPV0790.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439579/ERR1439579_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439579/ERR1439579_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439579/PHESPV0790.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439579/PHESPV0790.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 246985816;249893122 ERS1194958 ERX1509957 GENOMIC 589716044 2016-06-10 PHESPV0790 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439579/PHESPV0790.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439579/PHESPV0790.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439579 PHESPV0790 ERR1439376 PHESPV0587 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439376 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439376 1a8843492330b3eb26efaf0f9fb3539a;3524bbad0a04d3f9cbd0024bee2e63a9 1313 159824002 9cedd557e05e3bec286aac116d722f49;4edf497d443ef79303732fbcc76aa2cf SAMEA4023645 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439376/ERR1439376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439376/ERR1439376_2.fastq.gz 1983946 WGS PHESPV0587 RANDOM 107217568;112683028 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4fc6cf620f597ecf16d92fd7ab60cc10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439376/ERR1439376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439376/ERR1439376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439376/PHESPV0587.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439376/PHESPV0587.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439376/ERR1439376_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439376/ERR1439376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439376/PHESPV0587.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439376/PHESPV0587.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113591348;119047704 ERS1194755 ERX1509754 GENOMIC 388710245 2016-06-10 PHESPV0587 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439376/PHESPV0587.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439376/PHESPV0587.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439376 PHESPV0587 ERR1440047 PHESPV1258 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440047 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440047 8b9c8b7765e2fe8c5cf43f3ee3150d89;4aeb5b0bb52e67aa6c940f4b1e4ee6a8 1313 132805337 5bdc00735fc2f8c074cd4b7c7ca0879a;7573943979d734ef9ee6dd8af598d4d0 SAMEA4024316 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440047/ERR1440047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440047/ERR1440047_2.fastq.gz 1543348 WGS PHESPV1258 RANDOM 89388216;90129522 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 715d18db7879f296b11d86a0f17ac2af ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440047/ERR1440047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440047/ERR1440047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440047/PHESPV1258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440047/PHESPV1258.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440047/ERR1440047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440047/ERR1440047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440047/PHESPV1258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440047/PHESPV1258.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94438491;95173213 ERS1195426 ERX1510425 GENOMIC 306167495 2016-06-10 PHESPV1258 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440047/PHESPV1258.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440047/PHESPV1258.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440047 PHESPV1258 ERR1440189 PHESPV1403 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440189 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440189 f1c1d2b164060fc69e714462f31cc98c;52ca99a6a6dd96e31615e8ca50235f08 1313 129523073 dd5e1299271601c747dee517de8be2ff;ba1dbd6e6ee1bf74c367fe877423353e SAMEA4024458 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440189/ERR1440189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440189/ERR1440189_2.fastq.gz 1486366 WGS PHESPV1403 RANDOM 85230189;90662229 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 917fdcce57a0275701e0c27757a10143 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440189/ERR1440189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440189/ERR1440189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440189/PHESPV1403.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440189/PHESPV1403.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440189/ERR1440189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440189/ERR1440189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440189/PHESPV1403.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440189/PHESPV1403.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90209754;95482169 ERS1195568 ERX1510567 GENOMIC 294349220 2016-06-10 PHESPV1403 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440189/PHESPV1403.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440189/PHESPV1403.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440189 PHESPV1403 ERR1440177 PHESPV1390 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440177 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440177 97510dd95740687fc5e6d6bf5e3277e8;86fc76ad3128d428b06d9f906222c41a 1313 163947401 ad176373c4f9bd5d08214a15a1be2e1d;42dd2796f0f72bb8459bbb78cbcb8f74 SAMEA4024446 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440177/ERR1440177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440177/ERR1440177_2.fastq.gz 1701726 WGS PHESPV1390 RANDOM 108504484;110648396 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b51042625271ed248ac66901ed787f8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440177/ERR1440177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440177/ERR1440177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440177/PHESPV1390.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440177/PHESPV1390.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440177/ERR1440177_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440177/ERR1440177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440177/PHESPV1390.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440177/PHESPV1390.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114055844;116125791 ERS1195556 ERX1510555 GENOMIC 335319599 2016-06-10 PHESPV1390 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440177/PHESPV1390.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440177/PHESPV1390.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440177 PHESPV1390 ERR1440288 PHESPV1503 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440288 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440288 54c37d8225bc63efce45d7691f2ef4e0;8b61c5dc542aad36fd58524f142bd1fc 1313 159564901 d2e07f4b69c06a07ab1718f7459a2ff3;7bf3c9acd3e5d0474295db0750d4afea SAMEA4024557 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440288/ERR1440288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440288/ERR1440288_2.fastq.gz 1944493 WGS PHESPV1503 RANDOM 108505536;110677678 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 65858d0f5e2f998ea61b079ac3104f95 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440288/ERR1440288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440288/ERR1440288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440288/PHESPV1503.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440288/PHESPV1503.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440288/ERR1440288_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440288/ERR1440288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440288/PHESPV1503.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440288/PHESPV1503.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114740751;116932477 ERS1195667 ERX1510666 GENOMIC 386601326 2016-06-10 PHESPV1503 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440288/PHESPV1503.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440288/PHESPV1503.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440288 PHESPV1503 ERR1440271 PHESPV1486 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440271 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440271 b9f79aeb200f2afdae2b3adbc4342001;ab0a87f1a8644e4c40e4f41786b33bff 1313 179407977 5a82aabadeceee36623ad1c3c35185f1;23f39a45af6521fa22350cf13639437f SAMEA4024540 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440271/ERR1440271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440271/ERR1440271_2.fastq.gz 2142887 WGS PHESPV1486 RANDOM 120936787;125030695 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a873d1ff72a8df7ae87fc5634bff1f7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440271/ERR1440271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440271/ERR1440271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440271/PHESPV1486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440271/PHESPV1486.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440271/ERR1440271_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440271/ERR1440271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440271/PHESPV1486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440271/PHESPV1486.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127713230;131780072 ERS1195650 ERX1510649 GENOMIC 425597560 2016-06-10 PHESPV1486 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440271/PHESPV1486.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440271/PHESPV1486.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440271 PHESPV1486 ERR1440320 PHESPV1535 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440320 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440320 6ab4169f9a8cff0391cda897618cc7a5;2790f4e82304a22f6913fe479b38cfa1 1313 137404703 fc10a5ff73c43f187a3e4114eab2b8cb;b163c6339892adb04e3fdbe08385d9a5 SAMEA4024589 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440320/ERR1440320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440320/ERR1440320_2.fastq.gz 1475676 WGS PHESPV1535 RANDOM 96328751;100037580 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e07cfe6895c81cec73a835f15fc8caa6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440320/ERR1440320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440320/ERR1440320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440320/PHESPV1535.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440320/PHESPV1535.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440320/ERR1440320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440320/ERR1440320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440320/PHESPV1535.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440320/PHESPV1535.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92522461;96239895 ERS1195699 ERX1510698 GENOMIC 274822499 2016-06-10 PHESPV1535 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440320/PHESPV1535.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440320/PHESPV1535.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440320 PHESPV1535 ERR1440334 PHESPV1549 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440334 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440334 55190b3e57cb1a69b38e8ef2094f1d2f;d588e0ae3289ceeddbcf7efabe2cf0d8 1313 153730119 406864677f3eaffdce3d9e30a057651a;0192ba8a40594d48705b10649ff7ecf5 SAMEA4024603 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440334/ERR1440334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440334/ERR1440334_2.fastq.gz 1813585 WGS PHESPV1549 RANDOM 111310094;114982156 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6f43197069dd2e55c9b74bfa7f141443 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440334/ERR1440334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440334/ERR1440334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440334/PHESPV1549.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440334/PHESPV1549.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440334/ERR1440334_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440334/ERR1440334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440334/PHESPV1549.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440334/PHESPV1549.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106617096;110244597 ERS1195713 ERX1510712 GENOMIC 354820114 2016-06-10 PHESPV1549 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440334/PHESPV1549.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440334/PHESPV1549.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440334 PHESPV1549 ERR1440335 PHESPV1550 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440335 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440335 78b652ac91180930368f556bd3fd2c6c;f1bc810a6ebed13c8b2eb18e7b955b9d 1313 185007880 a5f4f678a7aaafa080bf9b6ca0ca476e;131f1ff5e65c5b7dc8d267bd60504e7f SAMEA4024604 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440335/ERR1440335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440335/ERR1440335_2.fastq.gz 2175189 WGS PHESPV1550 RANDOM 134079140;137955834 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3fb99714260015144ec627a296021aa4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440335/ERR1440335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440335/ERR1440335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440335/PHESPV1550.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440335/PHESPV1550.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440335/ERR1440335_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440335/ERR1440335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440335/PHESPV1550.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440335/PHESPV1550.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128589614;132432262 ERS1195714 ERX1510713 GENOMIC 428069219 2016-06-10 PHESPV1550 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440335/PHESPV1550.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440335/PHESPV1550.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440335 PHESPV1550 ERR1440345 PHESPV1560 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440345 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440345 c8f28692984cd839121f8051466df552;82245e10dc2288433161d3a4d42deceb 1313 111311587 0e0b214cb50cd0c56a74bc0ee4980e81;9866482dba3e237f676ce69b7364dca0 SAMEA4024614 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440345/ERR1440345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440345/ERR1440345_2.fastq.gz 1287263 WGS PHESPV1560 RANDOM 79522335;83976380 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 99519139260618bcd9cd6a9a53318213 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440345/ERR1440345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440345/ERR1440345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440345/PHESPV1560.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440345/PHESPV1560.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440345/ERR1440345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440345/ERR1440345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440345/PHESPV1560.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440345/PHESPV1560.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76389352;80779161 ERS1195724 ERX1510723 GENOMIC 253551015 2016-06-10 PHESPV1560 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440345/PHESPV1560.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440345/PHESPV1560.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440345 PHESPV1560 ERR1440348 PHESPV1563 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440348 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440348 1c78efd5c0b88fd90762f68b0c5ced90;adea0f3cee78d60d0644e8189bc50c4e 1313 142189232 06f6b67da05f5252a0c0ddbd79991f2a;a811f85b1fbbcf08a5ac10accb9e99ef SAMEA4024617 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440348/ERR1440348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440348/ERR1440348_2.fastq.gz 1658508 WGS PHESPV1563 RANDOM 103088146;106347492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 83c362de66ba1fea20280fbddc3003b5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440348/ERR1440348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440348/ERR1440348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440348/PHESPV1563.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440348/PHESPV1563.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440348/ERR1440348_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440348/ERR1440348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440348/PHESPV1563.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440348/PHESPV1563.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98871906;102081084 ERS1195727 ERX1510726 GENOMIC 326747347 2016-06-10 PHESPV1563 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440348/PHESPV1563.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440348/PHESPV1563.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440348 PHESPV1563 ERR1440355 PHESPV1570 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440355 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440355 c029a9dcae4fbf4d2bc7f924f978090f;ef731f8ef5eec8b98f183897dbbdc941 1313 136394687 f4fae09f8a1c5626d37c780765d44321;86d189326070e37fdb342df66327795a SAMEA4024624 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440355/ERR1440355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440355/ERR1440355_2.fastq.gz 1583419 WGS PHESPV1570 RANDOM 98986373;101754754 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c74be131039f5b2f4d311bf94490e21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440355/ERR1440355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440355/ERR1440355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440355/PHESPV1570.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440355/PHESPV1570.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440355/ERR1440355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440355/ERR1440355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440355/PHESPV1570.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440355/PHESPV1570.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94987663;97714639 ERS1195734 ERX1510733 GENOMIC 311467209 2016-06-10 PHESPV1570 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440355/PHESPV1570.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440355/PHESPV1570.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440355 PHESPV1570 ERR1440392 PHESPV1607 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440392 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440392 22b92f6145141807a7c49099bd72dcd9;778856826672089dabbe29b6c74fc797 1313 158957780 b4ce10494e8c85ad193755ce7a5c9e39;993340c97b85320d4d6d4b2632146bf8 SAMEA4024661 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440392/ERR1440392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440392/ERR1440392_2.fastq.gz 1721369 WGS PHESPV1607 RANDOM 112590225;117346732 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9887d4154d6257754c765d26322f0653 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440392/ERR1440392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440392/ERR1440392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440392/PHESPV1607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440392/PHESPV1607.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440392/ERR1440392_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440392/ERR1440392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440392/PHESPV1607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440392/PHESPV1607.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108130771;112856031 ERS1195771 ERX1510770 GENOMIC 335024948 2016-06-10 PHESPV1607 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440392/PHESPV1607.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440392/PHESPV1607.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440392 PHESPV1607 ERR1440372 PHESPV1587 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440372 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440372 e6d4fe9e895db264fe7c91cf6416e975;0b7fa1b377f62d29b44a794073b80ae3 1313 164358819 5c76157b657f0ddfbf16550aa46fe48d;bb29e2aae9bd1564e0aaa7e7111ef504 SAMEA4024641 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440372/ERR1440372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440372/ERR1440372_2.fastq.gz 1874675 WGS PHESPV1587 RANDOM 114690676;125435584 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5fc6ceb47560faf73e36c4e14e3ef9b2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440372/ERR1440372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440372/ERR1440372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440372/PHESPV1587.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440372/PHESPV1587.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440372/ERR1440372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440372/ERR1440372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440372/PHESPV1587.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440372/PHESPV1587.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109894396;120552754 ERS1195751 ERX1510750 GENOMIC 368258141 2016-06-10 PHESPV1587 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440372/PHESPV1587.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440372/PHESPV1587.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440372 PHESPV1587 ERR1440396 PHESPV1611 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440396 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440396 232fe20245c044c12c735c3b55c1dfc2;81e4a49d872e0f8c2f67cdc6c8034482 1313 165062974 12d3edf0cf9d5546fed3e77eb7c8ff93;66c478257fca688d22e844cdccd4f761 SAMEA4024665 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440396/ERR1440396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440396/ERR1440396_2.fastq.gz 1904289 WGS PHESPV1611 RANDOM 117221925;124712552 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5f3ab4bfc325bfe6a66e3623989b6c9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440396/ERR1440396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440396/ERR1440396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440396/PHESPV1611.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440396/PHESPV1611.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440396/ERR1440396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440396/ERR1440396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440396/PHESPV1611.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440396/PHESPV1611.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112323220;119745224 ERS1195775 ERX1510774 GENOMIC 373727341 2016-06-10 PHESPV1611 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440396/PHESPV1611.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440396/PHESPV1611.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440396 PHESPV1611 ERR1440397 PHESPV1612 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440397 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440397 5471829348ad5e22391e1411e1d581fc;dc02cb0c8aaa39a00d8dfa6b340ee2cb 1313 123926333 230eb2d8f164f5014043ae6b7ed644b5;41d40f22133d16c8356cb80a02649c17 SAMEA4024666 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440397/ERR1440397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440397/ERR1440397_2.fastq.gz 1360925 WGS PHESPV1612 RANDOM 89084752;90822522 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 73bd45105444c56fe4620afe22811a4a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440397/ERR1440397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440397/ERR1440397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440397/PHESPV1612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440397/PHESPV1612.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440397/ERR1440397_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440397/ERR1440397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440397/PHESPV1612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440397/PHESPV1612.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85693912;87422894 ERS1195776 ERX1510775 GENOMIC 266197788 2016-06-10 PHESPV1612 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440397/PHESPV1612.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440397/PHESPV1612.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440397 PHESPV1612 ERR1440410 PHESPV1625 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440410 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440410 37ab1152c7f4fe301c65960a0d7d06bd;462902e0aad83766aee77a23ce6585e0 1313 116140342 a484a79ccb0ace7067782f0c844bdab5;024ef8351d92017749bb7becd7272028 SAMEA4024679 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440410/ERR1440410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440410/ERR1440410_2.fastq.gz 1290251 WGS PHESPV1625 RANDOM 83770472;84916898 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 18a766f0e211acbf992d6980e850f093 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440410/ERR1440410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440410/ERR1440410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440410/PHESPV1625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440410/PHESPV1625.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440410/ERR1440410_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440410/ERR1440410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440410/PHESPV1625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440410/PHESPV1625.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80577227;81730688 ERS1195789 ERX1510788 GENOMIC 250393774 2016-06-10 PHESPV1625 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440410/PHESPV1625.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440410/PHESPV1625.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440410 PHESPV1625 ERR1440445 PHESPV1660 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440445 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440445 82e7be73503c3b9bd13728ec4a89b854;592704e25f7a09ea6b573c56a51ef1e7 1313 165831911 eb33b816ee351bcefdc49276cf629d4e;c67db61a890f2c3f90af97c714ae9f7f SAMEA4024714 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440445/ERR1440445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440445/ERR1440445_2.fastq.gz 1810887 WGS PHESPV1660 RANDOM 119113426;120963671 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f18eb7706dd15ccb939b40a64d85ed11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440445/ERR1440445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440445/ERR1440445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440445/PHESPV1660.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440445/PHESPV1660.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440445/ERR1440445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440445/ERR1440445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440445/PHESPV1660.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440445/PHESPV1660.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114399620;116246178 ERS1195824 ERX1510823 GENOMIC 350463270 2016-06-10 PHESPV1660 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440445/PHESPV1660.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440445/PHESPV1660.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440445 PHESPV1660 ERR1440474 PHESPV1689 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440474 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440474 bd3d3e5f13ff11613e6bcfc2f1416eb5;f643eb046b2485b0a96a56552477c85a 1313 96000535 e88947264bec8483688873bef3e27427;c0df0f80f9b294bbb4e677b10b57c5fb SAMEA4024743 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440474/ERR1440474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440474/ERR1440474_2.fastq.gz 1076132 WGS PHESPV1689 RANDOM 69321381;69776683 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8eba6e27c698efea6c1200a181b77a4f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440474/ERR1440474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440474/ERR1440474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440474/PHESPV1689.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440474/PHESPV1689.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440474/ERR1440474_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440474/ERR1440474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440474/PHESPV1689.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440474/PHESPV1689.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66588004;67057065 ERS1195853 ERX1510852 GENOMIC 207147311 2016-06-10 PHESPV1689 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440474/PHESPV1689.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440474/PHESPV1689.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440474 PHESPV1689 ERR1440450 PHESPV1665 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440450 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440450 4481405291d26ce11372bba127486346;7330133659cf31e8925a08e60f5dcd4e 1313 147182763 e80c055404f1f6f1cf0ecee53e5c3c97;badf3f18cb34eef10bc4353801319ff5 SAMEA4024719 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440450/ERR1440450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440450/ERR1440450_2.fastq.gz 1629047 WGS PHESPV1665 RANDOM 106469486;107723224 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a53603811d1dc15a86aa65844770329a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440450/ERR1440450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440450/ERR1440450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440450/PHESPV1665.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440450/PHESPV1665.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440450/ERR1440450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440450/ERR1440450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440450/PHESPV1665.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440450/PHESPV1665.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102277766;103530845 ERS1195829 ERX1510828 GENOMIC 318706236 2016-06-10 PHESPV1665 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440450/PHESPV1665.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440450/PHESPV1665.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440450 PHESPV1665 ERR1440508 PHESPV1723 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440508 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440508 8642f14c8c781e1f34bd79f3d5069be5;425ffe01c5bf98bcd88e9fb2e45d50a2 1313 88162734 cfabafc939a8e624df4cda992d6c3069;9e2036c6dfe3f0bc5411bb7933dbafed SAMEA4024777 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440508/ERR1440508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440508/ERR1440508_2.fastq.gz 974271 WGS PHESPV1723 RANDOM 62763411;64552548 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 657837f31e86c7acda0bd62dd03784ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440508/ERR1440508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440508/ERR1440508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440508/PHESPV1723.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440508/PHESPV1723.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440508/ERR1440508_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440508/ERR1440508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440508/PHESPV1723.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440508/PHESPV1723.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60277064;62062929 ERS1195887 ERX1510886 GENOMIC 186922386 2016-06-10 PHESPV1723 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440508/PHESPV1723.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440508/PHESPV1723.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440508 PHESPV1723 ERR1438989 PHESPV0200 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438989 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438989 7c1a978137c1ab0a1d934bd6809e5c78;a0ac13f116c474324e443c4cb11b8b07 1313 147598476 4271916c27ac210f2499e4bf4c4c2138;e94040eac1cb89b25d4318d8e4de1233 SAMEA4023258 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438989/ERR1438989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438989/ERR1438989_2.fastq.gz 1668478 WGS PHESPV0200 RANDOM 99067364;100795320 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7f05d9acc7d9f2b18a3261788c873928 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438989/ERR1438989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438989/ERR1438989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438989/PHESPV0200.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438989/PHESPV0200.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438989/ERR1438989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438989/ERR1438989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438989/PHESPV0200.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438989/PHESPV0200.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104555904;106259967 ERS1194368 ERX1509367 GENOMIC 331086876 2016-06-10 PHESPV0200 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438989/PHESPV0200.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438989/PHESPV0200.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438989 PHESPV0200 ERR1439085 PHESPV0296 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439085 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439085 a3e4c2b9a45c6d05a0eea20dc590fdca;af7225e5041107b01f9f690fb77ef5d7 1313 147908828 8633b0421f35f2bb110f077d35ac2eb8;1f856310669a33e69fbe2ff3920ef191 SAMEA4023354 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439085/ERR1439085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439085/ERR1439085_2.fastq.gz 1614935 WGS PHESPV0296 RANDOM 107615411;106386274 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4a55a79132518e4807529efa4873eb8f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439085/ERR1439085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439085/ERR1439085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439085/PHESPV0296.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439085/PHESPV0296.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439085/ERR1439085_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439085/ERR1439085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439085/PHESPV0296.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439085/PHESPV0296.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103407337;102202118 ERS1194464 ERX1509463 GENOMIC 316532864 2016-06-10 PHESPV0296 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439085/PHESPV0296.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439085/PHESPV0296.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439085 PHESPV0296 ERR1439107 PHESPV0318 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439107 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439107 3afb57ae14c4429adebfa6355c5bd8a2;0153ecba1770569a4da94b0ef37d07ee 1313 205611768 5336014daf5ed44f6ea5c6f4443620ba;23daa984e30ad146fea6850870b89d3c SAMEA4023376 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439107/ERR1439107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439107/ERR1439107_2.fastq.gz 2242219 WGS PHESPV0318 RANDOM 148831478;147529340 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac6e88885b7483148ad7fcce19840b8b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439107/ERR1439107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439107/ERR1439107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439107/PHESPV0318.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439107/PHESPV0318.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439107/ERR1439107_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439107/ERR1439107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439107/PHESPV0318.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439107/PHESPV0318.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 143105267;141817023 ERS1194486 ERX1509485 GENOMIC 438622755 2016-06-10 PHESPV0318 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439107/PHESPV0318.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439107/PHESPV0318.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439107 PHESPV0318 ERR1439228 PHESPV0439 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439228 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439228 45b22d3ead2e203e686be37e8842d681;348377f9b60fa3c8ff4479fbf927c82a 1313 82066443 775ad838466c712de68689174208c0bc;058be358d1b6741351d0b23b4e17822d SAMEA4023497 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439228/ERR1439228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439228/ERR1439228_2.fastq.gz 900616 WGS PHESPV0439 RANDOM 59296215;59346276 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9dcb05bbe5c7b4b823310ee728a18151 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439228/ERR1439228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439228/ERR1439228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439228/PHESPV0439.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439228/PHESPV0439.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439228/ERR1439228_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439228/ERR1439228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439228/PHESPV0439.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439228/PHESPV0439.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57006375;57068781 ERS1194607 ERX1509606 GENOMIC 173697139 2016-06-10 PHESPV0439 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439228/PHESPV0439.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439228/PHESPV0439.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439228 PHESPV0439 ERR1439362 PHESPV0573 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439362 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439362 921fc2293411678ff297f152839c25d3;6d305edb1e4dd40f4740bc8bcbc17886 1313 85497703 22715f46a1ef20a7965f659ba45d9bc0;f00b1d29430178384dccd07d510d7330 SAMEA4023631 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439362/ERR1439362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439362/ERR1439362_2.fastq.gz 939299 WGS PHESPV0573 RANDOM 61570572;62336046 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62192e284732bf527ccef6d1f105d703 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439362/ERR1439362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439362/ERR1439362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439362/PHESPV0573.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439362/PHESPV0573.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439362/ERR1439362_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439362/ERR1439362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439362/PHESPV0573.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439362/PHESPV0573.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59172999;59950804 ERS1194741 ERX1509740 GENOMIC 183680365 2016-06-10 PHESPV0573 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439362/PHESPV0573.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439362/PHESPV0573.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439362 PHESPV0573 ERR1439366 PHESPV0577 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439366 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439366 0069e1717dc6df04553ba29856c7c5ec;c03464f93b256b2da47addec16962ed8 1313 130636438 e3291dd5adff49cf4a638c11b0c6089e;a3f78790f51025bf419e025233e178c5 SAMEA4023635 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439366/ERR1439366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439366/ERR1439366_2.fastq.gz 1450903 WGS PHESPV0577 RANDOM 94883393;94738576 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 601e69d9bdad6eaa47981d98236c78af ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439366/ERR1439366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439366/ERR1439366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439366/PHESPV0577.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439366/PHESPV0577.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439366/ERR1439366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439366/ERR1439366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439366/PHESPV0577.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439366/PHESPV0577.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91164371;91044449 ERS1194745 ERX1509744 GENOMIC 284592793 2016-06-10 PHESPV0577 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439366/PHESPV0577.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439366/PHESPV0577.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439366 PHESPV0577 ERR1439433 PHESPV0644 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439433 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439433 825af29e5f43232ae2dad818ad590440;4127aab8b2d273ea25fd366aa838a1e9 1313 97471473 9d96ed08ee8a53139fb52238e937ac28;f6e175604fff7f1bb314aa9ede2122ce SAMEA4023702 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439433/ERR1439433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439433/ERR1439433_2.fastq.gz 1080423 WGS PHESPV0644 RANDOM 70406391;70982203 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 04ce694e1ae07944d9d456121ff577d6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439433/ERR1439433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439433/ERR1439433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439433/PHESPV0644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439433/PHESPV0644.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439433/ERR1439433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439433/ERR1439433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439433/PHESPV0644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439433/PHESPV0644.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67658124;68248019 ERS1194812 ERX1509811 GENOMIC 211016056 2016-06-10 PHESPV0644 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439433/PHESPV0644.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439433/PHESPV0644.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439433 PHESPV0644 ERR1439465 PHESPV0676 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439465 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439465 ba42f3c979519719205979c0023d0bf7;ded1a8f5d0d243052c20a30c638062a9 1313 97767066 44dbffe9fb14f1365c72da39e4cb8f5e;b3a80caef9f317497bcb5618a37d65ba SAMEA4023734 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439465/ERR1439465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439465/ERR1439465_2.fastq.gz 1069932 WGS PHESPV0676 RANDOM 69782273;71466447 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c475f840f81ef4e3f9225e845986d8ba ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439465/ERR1439465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439465/ERR1439465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439465/PHESPV0676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439465/PHESPV0676.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439465/ERR1439465_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439465/ERR1439465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439465/PHESPV0676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439465/PHESPV0676.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67048249;68736474 ERS1194844 ERX1509843 GENOMIC 207876935 2016-06-10 PHESPV0676 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439465/PHESPV0676.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439465/PHESPV0676.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439465 PHESPV0676 ERR1439613 PHESPV0824 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439613 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439613 b9a82376a470ab1f59e687fc8a6751da;acbe900c4a390f5af5dd8ca56b50cadc 1313 250967833 644737c03216be5a36de647c42ae377e;ee8744e0f064d3c1046ad495663f5df0 SAMEA4023882 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439613/ERR1439613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439613/ERR1439613_2.fastq.gz 2790534 WGS PHESPV0824 RANDOM 164444530;171062589 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f2366eeaf42e986209070ecb728d5fcb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439613/ERR1439613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439613/ERR1439613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439613/PHESPV0824.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439613/PHESPV0824.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439613/ERR1439613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439613/ERR1439613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439613/PHESPV0824.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439613/PHESPV0824.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 172882728;179427373 ERS1194992 ERX1509991 GENOMIC 551449843 2016-06-10 PHESPV0824 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439613/PHESPV0824.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439613/PHESPV0824.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439613 PHESPV0824 ERR1439689 PHESPV0900 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439689 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439689 a51b435e454832e2a7360d41e1a46e2d;548adc7bca80d69e65585f6ccf718726 1313 204229548 b19521f6d1875874ee52bb765430ae43;6d9823c5cc5fcb499fb717d7dfca5b63 SAMEA4023958 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439689/ERR1439689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439689/ERR1439689_2.fastq.gz 2246906 WGS PHESPV0900 RANDOM 132736874;139431266 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 73bd58e753a4a8a075e3411451318abe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439689/ERR1439689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439689/ERR1439689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439689/PHESPV0900.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439689/PHESPV0900.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439689/ERR1439689_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439689/ERR1439689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439689/PHESPV0900.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439689/PHESPV0900.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 139675448;146270359 ERS1195068 ERX1510067 GENOMIC 443427544 2016-06-10 PHESPV0900 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439689/PHESPV0900.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439689/PHESPV0900.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439689 PHESPV0900 ERR1439712 PHESPV0923 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439712 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439712 96c1971041601e3c8660f6d857e59363;ab4bed3e6a2f2f11a928e95cfd4588fa 1313 178697634 7b13c4e83df96b9fd741260388c7a63b;475a768d2b032673a3c96c51c4d4d068 SAMEA4023981 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439712/ERR1439712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439712/ERR1439712_2.fastq.gz 2019401 WGS PHESPV0923 RANDOM 130153626;130158734 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f584c149f9aa4ec5fbe10a71b863ffd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439712/ERR1439712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439712/ERR1439712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439712/PHESPV0923.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439712/PHESPV0923.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439712/ERR1439712_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439712/ERR1439712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439712/PHESPV0923.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439712/PHESPV0923.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124931336;124960641 ERS1195091 ERX1510090 GENOMIC 392115488 2016-06-10 PHESPV0923 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439712/PHESPV0923.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439712/PHESPV0923.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439712 PHESPV0923 ERR1439736 PHESPV0947 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439736 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439736 950e6fa23c4ffac6a2d7954b27cfafbd;b69139dc37c5effa20b354453b43f6c7 1313 157331206 d657d843531c9fa2aec021e6c5c96c50;9c5e899eec73b24db18cb4524d25fb5e SAMEA4024005 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439736/ERR1439736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439736/ERR1439736_2.fastq.gz 1927573 WGS PHESPV0947 RANDOM 105972298;109607857 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cfa3eb19dd488127f218f27a6f1cf225 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439736/ERR1439736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439736/ERR1439736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439736/PHESPV0947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439736/PHESPV0947.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439736/ERR1439736_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439736/ERR1439736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439736/PHESPV0947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439736/PHESPV0947.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112067859;115638937 ERS1195115 ERX1510114 GENOMIC 382847486 2016-06-10 PHESPV0947 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439736/PHESPV0947.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439736/PHESPV0947.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439736 PHESPV0947 ERR1439714 PHESPV0925 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439714 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439714 a12f25bad137987871c2eb297d93d503;07eaad5601a2647624d5d9632f84b89a 1313 171353422 9ea636904a693a0f53fd4f61aab8e7ce;121ef50352e446b75996c64013e8cab3 SAMEA4023983 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439714/ERR1439714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439714/ERR1439714_2.fastq.gz 1937798 WGS PHESPV0925 RANDOM 125007809;124705657 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9fc59bac1dcef86614d744b95f93053d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439714/ERR1439714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439714/ERR1439714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439714/PHESPV0925.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439714/PHESPV0925.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439714/ERR1439714_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439714/ERR1439714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439714/PHESPV0925.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439714/PHESPV0925.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119955852;119679967 ERS1195093 ERX1510092 GENOMIC 376038117 2016-06-10 PHESPV0925 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439714/PHESPV0925.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439714/PHESPV0925.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439714 PHESPV0925 ERR1439740 PHESPV0951 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439740 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439740 a0a32406a76b7b6d60d31dd1da98a827;2720494a397110210a59f8f847f14d22 1313 147908672 3117091c15b6b913f5534ebb85fddf7a;14127cf4dd6aff71eeb309525d9c64f9 SAMEA4024009 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439740/ERR1439740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439740/ERR1439740_2.fastq.gz 1668648 WGS PHESPV0951 RANDOM 107880530;107747778 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90f06195654caf6c3679d8e027e80807 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439740/ERR1439740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439740/ERR1439740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439740/PHESPV0951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439740/PHESPV0951.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439740/ERR1439740_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439740/ERR1439740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439740/PHESPV0951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439740/PHESPV0951.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103528014;103421383 ERS1195119 ERX1510118 GENOMIC 324671990 2016-06-10 PHESPV0951 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439740/PHESPV0951.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439740/PHESPV0951.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439740 PHESPV0951 ERR1439821 PHESPV1032 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439821 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439821 aa3b14fdca13f6ac2418c51bc35edf9d;3feee0566151b7df2f79912bc819cee2 1313 124352554 15929af049d387be1fcaa37739f042d0;6a7904b4df3d6cefe64a4a205ee0d040 SAMEA4024090 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439821/ERR1439821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439821/ERR1439821_2.fastq.gz 1350578 WGS PHESPV1032 RANDOM 89730291;90202160 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b8cb2c8ec958b7945145cf2bb40e8c9c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439821/ERR1439821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439821/ERR1439821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439821/PHESPV1032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439821/PHESPV1032.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439821/ERR1439821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439821/ERR1439821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439821/PHESPV1032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439821/PHESPV1032.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86331256;86812216 ERS1195200 ERX1510199 GENOMIC 264398158 2016-06-10 PHESPV1032 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439821/PHESPV1032.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439821/PHESPV1032.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439821 PHESPV1032 ERR1439882 PHESPV1093 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439882 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439882 b074db5d40c459082b9cc0fc76553c6d;03773d63a2da39f7eb6885d9efdc7b3d 1313 109844682 7b121a40d60ab6fcdcfca28d320d73ee;ce16f743a236d6cf25ca18422c5acba2 SAMEA4024151 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439882/ERR1439882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439882/ERR1439882_2.fastq.gz 1203388 WGS PHESPV1093 RANDOM 73555554;74700832 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6967a890ec009bcb8af0cd31d20878f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439882/ERR1439882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439882/ERR1439882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439882/PHESPV1093.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439882/PHESPV1093.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439882/ERR1439882_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439882/ERR1439882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439882/PHESPV1093.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439882/PHESPV1093.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77651580;78781989 ERS1195261 ERX1510260 GENOMIC 238136139 2016-06-10 PHESPV1093 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439882/PHESPV1093.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439882/PHESPV1093.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439882 PHESPV1093 ERR1440031 PHESPV1242 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440031 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440031 7d26e6deff0eff2f6da11402049c2333;380082615dc7e0d917ee6a809cc04b9d 1313 135552876 4e42950509404c4e4a423d1d9519b537;7e9c2cba018ece363bf340107dfcf232 SAMEA4024300 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440031/ERR1440031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440031/ERR1440031_2.fastq.gz 1548284 WGS PHESPV1242 RANDOM 90126734;92903701 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0388cfa735cf31b88cff65ff861682dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440031/ERR1440031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440031/ERR1440031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440031/PHESPV1242.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440031/PHESPV1242.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440031/ERR1440031_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440031/ERR1440031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440031/PHESPV1242.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440031/PHESPV1242.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95224733;97973006 ERS1195410 ERX1510409 GENOMIC 307411939 2016-06-10 PHESPV1242 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440031/PHESPV1242.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440031/PHESPV1242.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440031 PHESPV1242 ERR1440214 PHESPV1428 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440214 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440214 c7d88e8a93e37c32ca5cc534cb9f682d;efe6cadae0d784dc00967298756e9d9a 1313 103810134 3df77b6006415cfef2630f0581f69a26;7d698506dcf733bd0b7e73d7debc5449 SAMEA4024483 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440214/ERR1440214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440214/ERR1440214_2.fastq.gz 1122551 WGS PHESPV1428 RANDOM 68768515;70885851 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d1034a356d45aab9894ed2d2166de3a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440214/ERR1440214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440214/ERR1440214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440214/PHESPV1428.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440214/PHESPV1428.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440214/ERR1440214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440214/ERR1440214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440214/PHESPV1428.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440214/PHESPV1428.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72615630;74691790 ERS1195593 ERX1510592 GENOMIC 221677438 2016-06-10 PHESPV1428 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440214/PHESPV1428.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440214/PHESPV1428.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440214 PHESPV1428 ERR1440283 PHESPV1498 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440283 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440283 1635348e2a4c9c56f9db7af2a65e6090;27e8add2e33485932858030832b0be4a 1313 136367653 eff5a90f820ce6691cc2bf6b3157b016;3edc39f1fa2bf20f6e1bbff43a5e8d13 SAMEA4024552 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440283/ERR1440283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440283/ERR1440283_2.fastq.gz 1510733 WGS PHESPV1498 RANDOM 98384868;98011365 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f52d83feeca1a032c89d32a85baca212 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440283/ERR1440283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440283/ERR1440283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440283/PHESPV1498.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440283/PHESPV1498.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440283/ERR1440283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440283/ERR1440283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440283/PHESPV1498.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440283/PHESPV1498.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94429392;94088445 ERS1195662 ERX1510661 GENOMIC 280527892 2016-06-10 PHESPV1498 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440283/PHESPV1498.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440283/PHESPV1498.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440283 PHESPV1498 ERR1440307 PHESPV1522 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440307 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440307 bc105f5b63bea247099c5e09c9a23a57;9adc0a222522efd8dea6708db84be888 1313 137341064 e5d32143c7ecf856cd7a879b769f21ce;dd0700385bb4abb8ffa86f5062ddb801 SAMEA4024576 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440307/ERR1440307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440307/ERR1440307_2.fastq.gz 1481959 WGS PHESPV1522 RANDOM 98652210;98763792 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 990047ebf12a0799d4249f5cc7a827e2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440307/ERR1440307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440307/ERR1440307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440307/PHESPV1522.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440307/PHESPV1522.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440307/ERR1440307_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440307/ERR1440307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440307/PHESPV1522.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440307/PHESPV1522.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94825468;94963200 ERS1195686 ERX1510685 GENOMIC 281525710 2016-06-10 PHESPV1522 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440307/PHESPV1522.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440307/PHESPV1522.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440307 PHESPV1522 ERR1440663 PHESPV1878 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440663 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440663 2001ee6a5e7844c5df0b8f9bdac4a3f5;cb7210596a1a8092b76e9da15b0adcaa 1313 157069037 4cc21a8ef9fccc34e45416c1bb6ca4e5;82d77d7015c6490f0c5bfa9d38b2134b SAMEA4024932 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440663/ERR1440663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440663/ERR1440663_2.fastq.gz 1790355 WGS PHESPV1878 RANDOM 111966966;116977679 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ffb270e3781ca21addaec5cd98cf1af1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440663/ERR1440663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440663/ERR1440663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440663/PHESPV1878.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440663/PHESPV1878.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440663/ERR1440663_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440663/ERR1440663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440663/PHESPV1878.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440663/PHESPV1878.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107336681;112290689 ERS1196042 ERX1511041 GENOMIC 350540811 2016-06-10 PHESPV1878 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440663/PHESPV1878.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440663/PHESPV1878.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440663 PHESPV1878 ERR1440617 PHESPV1832 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440617 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440617 b97333d5cba18e1e6d9c0b8b4f34e14e;090ee1c45a062346f7cd2f4973f9292b 1313 135056223 ebd6ccba93b5982049d3e1d0571678ac;3cd10bb799285a3bf211a9b1666dd309 SAMEA4024886 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440617/ERR1440617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440617/ERR1440617_2.fastq.gz 1523693 WGS PHESPV1832 RANDOM 95989801;100687433 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4a0fd849326666632d8872386495e3a3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440617/ERR1440617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440617/ERR1440617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440617/PHESPV1832.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440617/PHESPV1832.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440617/ERR1440617_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440617/ERR1440617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440617/PHESPV1832.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440617/PHESPV1832.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92095948;96735658 ERS1195996 ERX1510995 GENOMIC 300047383 2016-06-10 PHESPV1832 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440617/PHESPV1832.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440617/PHESPV1832.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440617 PHESPV1832 ERR1440439 PHESPV1654 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440439 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440439 39e6a09dc84de2f25f790270a2bfc0a0;f0e1f543f83086147cab4ff2c11f1524 1313 165571056 a7ea3a9a4f1c6703cd55090837f8d7c1;15f084c657a425c796f98565f7838417 SAMEA4024708 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440439/ERR1440439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440439/ERR1440439_2.fastq.gz 1783031 WGS PHESPV1654 RANDOM 116761116;122728507 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fadb31016cf045149290588852b7c875 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440439/ERR1440439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440439/ERR1440439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440439/PHESPV1654.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440439/PHESPV1654.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440439/ERR1440439_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440439/ERR1440439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440439/PHESPV1654.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440439/PHESPV1654.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112180200;118100731 ERS1195818 ERX1510817 GENOMIC 349552321 2016-06-10 PHESPV1654 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440439/PHESPV1654.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440439/PHESPV1654.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440439 PHESPV1654 ERR1440338 PHESPV1553 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440338 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440338 eed2ebb9b2530e420fff7b51ca3606f4;1978d87fa47e9580630aa03435fa0e3f 1313 160333704 725f236fe351d4eac14e4656ec8f08e7;4c19a386c7ecc48c65e5efa908ca9f24 SAMEA4024607 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440338/ERR1440338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440338/ERR1440338_2.fastq.gz 1853758 WGS PHESPV1553 RANDOM 114981530;120782778 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7dcf614ff989f1e4dba9b7c82bd5fbe9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440338/ERR1440338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440338/ERR1440338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440338/PHESPV1553.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440338/PHESPV1553.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440338/ERR1440338_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440338/ERR1440338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440338/PHESPV1553.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440338/PHESPV1553.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110231306;115986355 ERS1195717 ERX1510716 GENOMIC 366147987 2016-06-10 PHESPV1553 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440338/PHESPV1553.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440338/PHESPV1553.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440338 PHESPV1553 ERR1438799 PHESPV0009 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438799 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438799 0f36a2eb024f834827ce6fa5a5d850c1;949d7d246cb34778a76a39866d078ffd 1313 53215758 877c0ffb89f60320c9bde94699f73549;2eed29a2cc16de78fd324040bbb68ed2 SAMEA4023068 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438799/ERR1438799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438799/ERR1438799_2.fastq.gz 601442 WGS PHESPV0009 RANDOM 35038621;36940921 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8c313d2e34cff385562c16ec410608cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438799/ERR1438799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438799/ERR1438799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438799/PHESPV0009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438799/PHESPV0009.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438799/ERR1438799_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438799/ERR1438799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438799/PHESPV0009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438799/PHESPV0009.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 37248373;39118895 ERS1194178 ERX1509177 GENOMIC 119104239 2016-06-10 PHESPV0009 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438799/PHESPV0009.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438799/PHESPV0009.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438799 PHESPV0009 ERR1440597 PHESPV1812 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440597 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440597 85277ff0a4cfc313abd5da48df405a56;68ee4ea7416c118a3aa5b14eab98aa40 1313 101136917 12959b9fc9c74be73a1d77b0e13a4bfc;85c31e72e287b6e37e7c63e6b810395a SAMEA4024866 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440597/ERR1440597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440597/ERR1440597_2.fastq.gz 1176348 WGS PHESPV1812 RANDOM 67721739;68999903 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ef767f569bf85862644d6f33570e8ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440597/ERR1440597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440597/ERR1440597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440597/PHESPV1812.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440597/PHESPV1812.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440597/ERR1440597_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440597/ERR1440597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440597/PHESPV1812.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440597/PHESPV1812.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71733890;73007651 ERS1195976 ERX1510975 GENOMIC 233395934 2016-06-10 PHESPV1812 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440597/PHESPV1812.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440597/PHESPV1812.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440597 PHESPV1812 ERR1438978 PHESPV0188 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438978 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438978 564c2d06c00599593bf30b2c2608170b;00735eabeb68ac34dc4e81673f801b30 1313 124041586 f2eeb0ccba28a8db4884f5f7b5370834;d0ae2f11820297bb602b65dd604bcf16 SAMEA4023247 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438978/ERR1438978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438978/ERR1438978_2.fastq.gz 1531638 WGS PHESPV0188 RANDOM 84258001;86374610 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a5b5ab67ba90930201f4d27c8fb3436 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438978/ERR1438978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438978/ERR1438978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438978/PHESPV0188.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438978/PHESPV0188.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438978/ERR1438978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438978/ERR1438978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438978/PHESPV0188.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438978/PHESPV0188.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89295639;91368546 ERS1194357 ERX1509356 GENOMIC 304411419 2016-06-10 PHESPV0188 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438978/PHESPV0188.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438978/PHESPV0188.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438978 PHESPV0188 ERR1438995 PHESPV0206 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438995 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438995 2298e5e7bc73e49b27ddbc06d569d0fe;d1bb7800593c35bbc4aefe46aa953f06 1313 96839951 bf5b928aa40ce4590f7ec0f36ff361eb;de6d128f1bbe2f2f73ecbdf74375891e SAMEA4023264 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438995/ERR1438995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438995/ERR1438995_2.fastq.gz 1190180 WGS PHESPV0206 RANDOM 65609694;67390730 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 33967e2073c8c5cd162a99a89879c9a6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438995/ERR1438995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438995/ERR1438995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438995/PHESPV0206.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438995/PHESPV0206.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438995/ERR1438995_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438995/ERR1438995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438995/PHESPV0206.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438995/PHESPV0206.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69630485;71355005 ERS1194374 ERX1509373 GENOMIC 236504390 2016-06-10 PHESPV0206 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438995/PHESPV0206.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438995/PHESPV0206.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438995 PHESPV0206 ERR1439566 PHESPV0777 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439566 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439566 3c09d6db966366acf1b2e8a28fbfec86;bf8d7618a8d10a0e0a7d9fc4c82b8198 1313 160157730 78c5cda24fbef677f3aa2210394d95bc;1f685299fb3b8aeb5200d6a57dcaeaee SAMEA4023835 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439566/ERR1439566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439566/ERR1439566_2.fastq.gz 1777552 WGS PHESPV0777 RANDOM 111772083;112063639 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5f2c561c79c068028b57b158ce607935 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439566/ERR1439566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439566/ERR1439566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439566/PHESPV0777.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439566/PHESPV0777.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439566/ERR1439566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439566/ERR1439566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439566/PHESPV0777.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439566/PHESPV0777.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107037288;107401895 ERS1194945 ERX1509944 GENOMIC 324325107 2016-06-10 PHESPV0777 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439566/PHESPV0777.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439566/PHESPV0777.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439566 PHESPV0777 ERR1439480 PHESPV0691 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439480 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439480 56ddb5f81cf6782c4c376a6b0a9b6083;27bf5e962f285c2fa801782305a43f7b 1313 124559390 a7238817f8acb6f75687f74d9c1ce377;5d44fc99308057c40f2e6174d2016a35 SAMEA4023749 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439480/ERR1439480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439480/ERR1439480_2.fastq.gz 1495644 WGS PHESPV0691 RANDOM 83890711;86728603 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4dfec1c14bdb7891d4164140845e274b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439480/ERR1439480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439480/ERR1439480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439480/PHESPV0691.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439480/PHESPV0691.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439480/ERR1439480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439480/ERR1439480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439480/PHESPV0691.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439480/PHESPV0691.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88907674;91811324 ERS1194859 ERX1509858 GENOMIC 292617098 2016-06-10 PHESPV0691 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439480/PHESPV0691.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439480/PHESPV0691.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439480 PHESPV0691 ERR1439599 PHESPV0810 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439599 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439599 1a970963c99141efb785154dfa242148;1a4095ee3e807ddb8c2b938ef8235c06 1313 152438599 40a4a0e96c9693b888b9406100880959;ca640863852534d9a03e67f1a2ea940a SAMEA4023868 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439599/ERR1439599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439599/ERR1439599_2.fastq.gz 1624939 WGS PHESPV0810 RANDOM 110027549;110134347 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 22fb8b2d84759626b28e7f6a76595d63 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439599/ERR1439599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439599/ERR1439599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439599/PHESPV0810.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439599/PHESPV0810.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439599/ERR1439599_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439599/ERR1439599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439599/PHESPV0810.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439599/PHESPV0810.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105835378;105943834 ERS1194978 ERX1509977 GENOMIC 318471983 2016-06-10 PHESPV0810 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439599/PHESPV0810.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439599/PHESPV0810.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439599 PHESPV0810 ERR1439602 PHESPV0813 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439602 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439602 a315d966ed90a24092eade3cfc9a92da;278d1515f8b65c2a34ce1132c884e0f0 1313 158365190 6c868c3a0d63000b29e923d78385a76b;c6378e96ccb55afb16f153e9c3288c69 SAMEA4023871 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439602/ERR1439602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439602/ERR1439602_2.fastq.gz 1676170 WGS PHESPV0813 RANDOM 112812764;115252437 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad1699ab4edfe85962749a062df883f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439602/ERR1439602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439602/ERR1439602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439602/PHESPV0813.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439602/PHESPV0813.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439602/ERR1439602_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439602/ERR1439602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439602/PHESPV0813.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439602/PHESPV0813.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108425485;110842738 ERS1194981 ERX1509980 GENOMIC 326518183 2016-06-10 PHESPV0813 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439602/PHESPV0813.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439602/PHESPV0813.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439602 PHESPV0813 ERR1439578 PHESPV0789 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439578 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439578 d1de482b3c513a30ba05bcf5497dba1b;be2dd40d29173635d70733510b9f626c 1313 405453807 1fe571cb4ae4544d219a0837a9672854;0c1a51b3fb69e1a7defba2ede034eee1 SAMEA4023847 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439578/ERR1439578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439578/ERR1439578_2.fastq.gz 3216778 WGS PHESPV0789 RANDOM 250937222;253817108 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4cecff74157e472ca1a8627d69c5c008 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439578/ERR1439578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439578/ERR1439578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439578/PHESPV0789.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439578/PHESPV0789.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439578/ERR1439578_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439578/ERR1439578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439578/PHESPV0789.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439578/PHESPV0789.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 260439138;263285407 ERS1194957 ERX1509956 GENOMIC 622376050 2016-06-10 PHESPV0789 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439578/PHESPV0789.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439578/PHESPV0789.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439578 PHESPV0789 ERR1439608 PHESPV0819 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439608 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439608 c14b114a5515931cfe8cdeccf5082626;b157021b9d8d71070ecb8353ab34bcf3 1313 120903405 ca5bf4f7d83d2804b58ce03167300fde;8bae65b9ec80c99e7046f4d42aff0506 SAMEA4023877 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439608/ERR1439608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439608/ERR1439608_2.fastq.gz 1286035 WGS PHESPV0819 RANDOM 86644791;87576517 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9ea36571ade8bad43fb31c1555120827 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439608/ERR1439608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439608/ERR1439608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439608/PHESPV0819.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439608/PHESPV0819.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439608/ERR1439608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439608/ERR1439608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439608/PHESPV0819.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439608/PHESPV0819.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83453677;84376802 ERS1194987 ERX1509986 GENOMIC 250893760 2016-06-10 PHESPV0819 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439608/PHESPV0819.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439608/PHESPV0819.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439608 PHESPV0819 ERR1439605 PHESPV0816 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439605 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439605 ff6f2cec517b69c5d364475fceaca699;41f4a720a985d9074765163369332ce7 1313 230678860 fc5580fb9d543b4659c6fe9a6a5c4b11;4f4993e730959ee0d7362b8f7ccc4be3 SAMEA4023874 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439605/ERR1439605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439605/ERR1439605_2.fastq.gz 2457749 WGS PHESPV0816 RANDOM 164960792;166560175 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 11402395f3f0dbcf977bb147d29fe84f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439605/ERR1439605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439605/ERR1439605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439605/PHESPV0816.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439605/PHESPV0816.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439605/ERR1439605_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439605/ERR1439605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439605/PHESPV0816.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439605/PHESPV0816.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 158817321;160403367 ERS1194984 ERX1509983 GENOMIC 480114713 2016-06-10 PHESPV0816 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439605/PHESPV0816.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439605/PHESPV0816.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439605 PHESPV0816 ERR1439700 PHESPV0911 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439700 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439700 198a5528e62d20e3487c9063f408fc77;9df96c95e4c02cd767934ae759135e29 1313 169652995 5d8f1ee3fbeb547dd346153fd1692cee;1d07d987af56a5f4a49914f3cd18f9f2 SAMEA4023969 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439700/ERR1439700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439700/ERR1439700_2.fastq.gz 1902644 WGS PHESPV0911 RANDOM 123285915;123309147 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0614a0414958bbf99294c09c5aae806b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439700/ERR1439700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439700/ERR1439700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439700/PHESPV0911.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439700/PHESPV0911.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439700/ERR1439700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439700/ERR1439700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439700/PHESPV0911.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439700/PHESPV0911.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118285206;118328089 ERS1195079 ERX1510078 GENOMIC 369418774 2016-06-10 PHESPV0911 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439700/PHESPV0911.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439700/PHESPV0911.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439700 PHESPV0911 ERR1439733 PHESPV0944 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439733 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439733 ea20b11f174b2ac93022aef933c79cbf;f54c2019108836463badb5d9b9d0e7b9 1313 158771510 a796a97a98022c09bf84d8f3df45119f;69177db6aa980b28f29217cd78efda33 SAMEA4024002 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439733/ERR1439733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439733/ERR1439733_2.fastq.gz 1785724 WGS PHESPV0944 RANDOM 115798624;115661703 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 077db39798d2bcd26784e5d12fec0fef ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439733/ERR1439733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439733/ERR1439733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439733/PHESPV0944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439733/PHESPV0944.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439733/ERR1439733_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439733/ERR1439733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439733/PHESPV0944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439733/PHESPV0944.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111145482;111038532 ERS1195112 ERX1510111 GENOMIC 348080217 2016-06-10 PHESPV0944 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439733/PHESPV0944.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439733/PHESPV0944.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439733 PHESPV0944 ERR1439823 PHESPV1034 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439823 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439823 be11a4b705f19db23584431c4c6e04b1;9bf440dc6b214546ad6d4dc08775bf23 1313 131864161 74987602d5b623c6dd08849db1a8b849;3f59c0a3bb4993a51e54e1e8d1e3a89c SAMEA4024092 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439823/ERR1439823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439823/ERR1439823_2.fastq.gz 1424002 WGS PHESPV1034 RANDOM 87254119;90560269 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b011037b3aa8417764749fd0d9d9313c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439823/ERR1439823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439823/ERR1439823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439823/PHESPV1034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439823/PHESPV1034.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439823/ERR1439823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439823/ERR1439823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439823/PHESPV1034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439823/PHESPV1034.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92015451;95264091 ERS1195202 ERX1510201 GENOMIC 281176291 2016-06-10 PHESPV1034 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439823/PHESPV1034.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439823/PHESPV1034.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439823 PHESPV1034 ERR1439872 PHESPV1083 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439872 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439872 3e7375328a97e55fe64d386dbbbde55d;7ec78444ca5ce5831e9842f8f64dbfae 1313 48284681 707e6967ad90d550f661bfa129c1164b;6f237bb13f0807e5e759666227314f66 SAMEA4024141 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439872/ERR1439872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439872/ERR1439872_2.fastq.gz 541380 WGS PHESPV1083 RANDOM 32113800;33380734 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cb3c9ab2b5e1a87a272db55ff81a2646 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439872/ERR1439872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439872/ERR1439872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439872/PHESPV1083.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439872/PHESPV1083.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439872/ERR1439872_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439872/ERR1439872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439872/PHESPV1083.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439872/PHESPV1083.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 34143291;35388131 ERS1195251 ERX1510250 GENOMIC 107182921 2016-06-10 PHESPV1083 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439872/PHESPV1083.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439872/PHESPV1083.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439872 PHESPV1083 ERR1439908 PHESPV1119 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439908 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439908 64b3e2867d2eab890d6944b7e13c2207;cb45a025b9d67e899769d036536fe499 1313 152124989 080aa19c088a58fff0eb0c17f4fbfea7;8f675619e1aed0f15340920aa95203bc SAMEA4024177 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439908/ERR1439908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439908/ERR1439908_2.fastq.gz 1694952 WGS PHESPV1119 RANDOM 102121602;103407760 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cef047b1b3d58e1d66b430c3d01d6255 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439908/ERR1439908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439908/ERR1439908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439908/PHESPV1119.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439908/PHESPV1119.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439908/ERR1439908_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439908/ERR1439908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439908/PHESPV1119.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439908/PHESPV1119.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107709179;109004323 ERS1195287 ERX1510286 GENOMIC 336260624 2016-06-10 PHESPV1119 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439908/PHESPV1119.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439908/PHESPV1119.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439908 PHESPV1119 ERR1440191 PHESPV1405 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440191 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440191 81838d8f28959d78fd421ac1c0044f2e;bc6ec2d779c0ac21383e0a1cca78063c 1313 138161346 5fbec80864a8f14bf95c47c4692256bf;bf411a743dc6ebc23895e24072999f54 SAMEA4024460 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440191/ERR1440191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440191/ERR1440191_2.fastq.gz 1510376 WGS PHESPV1405 RANDOM 92663772;94276042 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 162cbcfaa4d45b94df3dcfb038e0cd7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440191/ERR1440191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440191/ERR1440191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440191/PHESPV1405.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440191/PHESPV1405.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440191/ERR1440191_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440191/ERR1440191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440191/PHESPV1405.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440191/PHESPV1405.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97717618;99308675 ERS1195570 ERX1510569 GENOMIC 298852767 2016-06-10 PHESPV1405 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440191/PHESPV1405.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440191/PHESPV1405.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440191 PHESPV1405 ERR1440667 PHESPV1882 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440667 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440667 4f6063f0909b1430a46e2ca79978ba9c;8d25d93726b49c5405c46f4eee94323b 1313 107219970 03a78c896d5b3a839de5c30d6dd33361;d25bf60656575525f24864c4fe8a5ad8 SAMEA4024936 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440667/ERR1440667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440667/ERR1440667_2.fastq.gz 1160260 WGS PHESPV1882 RANDOM 76585278;76785717 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 457ce22b00182d06fd728d2e578f1683 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440667/ERR1440667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440667/ERR1440667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440667/PHESPV1882.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440667/PHESPV1882.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440667/ERR1440667_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440667/ERR1440667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440667/PHESPV1882.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440667/PHESPV1882.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73608606;73804857 ERS1196046 ERX1511045 GENOMIC 226322337 2016-06-10 PHESPV1882 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440667/PHESPV1882.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440667/PHESPV1882.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440667 PHESPV1882 ERR1440723 PHESPV1938 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440723 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440723 49cab8cd40c94e84529c1406e6ba0d83;7ae4c2ef230d920f1852c13df452c14a 1313 152848510 f9791a8c5ac2f35c6f1cd6190d10ade7;81819ffd58ff916abf85d9508f1db247 SAMEA4024992 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440723/ERR1440723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440723/ERR1440723_2.fastq.gz 1629642 WGS PHESPV1938 RANDOM 108607395;109084667 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dab9b1d14b5aa001cf31f3a2c965a71f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440723/ERR1440723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440723/ERR1440723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440723/PHESPV1938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440723/PHESPV1938.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440723/ERR1440723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440723/ERR1440723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440723/PHESPV1938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440723/PHESPV1938.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104311909;104786788 ERS1196102 ERX1511101 GENOMIC 317800968 2016-06-10 PHESPV1938 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440723/PHESPV1938.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440723/PHESPV1938.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440723 PHESPV1938 ERR1440709 PHESPV1924 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440709 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440709 c9c93723154b2beddae6dcc824bd5c48;2d7e4aa83f9df3eb96226b34afcf43f7 1313 150550889 0b27097111b7c822b084173582e030e4;490c21414f007531ec64b39b1d16cace SAMEA4024978 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440709/ERR1440709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440709/ERR1440709_2.fastq.gz 1619251 WGS PHESPV1924 RANDOM 106755258;108078885 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4e1fa26cfa6cb2ed61290796f3ab5e1f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440709/ERR1440709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440709/ERR1440709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440709/PHESPV1924.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440709/PHESPV1924.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440709/ERR1440709_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440709/ERR1440709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440709/PHESPV1924.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440709/PHESPV1924.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102497825;103814660 ERS1196088 ERX1511087 GENOMIC 315652840 2016-06-10 PHESPV1924 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440709/PHESPV1924.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440709/PHESPV1924.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440709 PHESPV1924 ERR1440708 PHESPV1923 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440708 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440708 9a1d093dda3ff9cbba044fb6bbb6f5f6;d3dadf8b14d674b7417d3e19141b5ab1 1313 116510695 fd8bf0a3ea9ec2a594ccf4bf43f1998f;92ab723201d45615c40c8d243f548f07 SAMEA4024977 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440708/ERR1440708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440708/ERR1440708_2.fastq.gz 1245454 WGS PHESPV1923 RANDOM 82634585;83608623 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a60c155e92b6cb5539e5273af7c66874 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440708/ERR1440708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440708/ERR1440708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440708/PHESPV1923.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440708/PHESPV1923.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440708/ERR1440708_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440708/ERR1440708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440708/PHESPV1923.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440708/PHESPV1923.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79408478;80373277 ERS1196087 ERX1511086 GENOMIC 242981013 2016-06-10 PHESPV1923 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440708/PHESPV1923.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440708/PHESPV1923.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440708 PHESPV1923 ERR1440725 PHESPV1940 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440725 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440725 6f13d6096528495edc26ae9cb00daccc;c94cc1c5afe4c90a3761057cf6003585 1313 114391838 56850a881ba7f665e199c54f8c8b94af;517515a96883b98679a18b97104c74e7 SAMEA4024994 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440725/ERR1440725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440725/ERR1440725_2.fastq.gz 1240727 WGS PHESPV1940 RANDOM 81993208;81728682 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline acf0fd6ea55f68feca4b3ca12848fcdf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440725/ERR1440725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440725/ERR1440725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440725/PHESPV1940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440725/PHESPV1940.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440725/ERR1440725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440725/ERR1440725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440725/PHESPV1940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440725/PHESPV1940.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78799010;78534214 ERS1196104 ERX1511103 GENOMIC 241826712 2016-06-10 PHESPV1940 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440725/PHESPV1940.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440725/PHESPV1940.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440725 PHESPV1940 ERR1440851 PHESPV2066 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440851 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440851 e6b899f781d12adeced5b12181baded6;0b7a2c8fd3241711d2fb92935dae2cf2 1313 162535095 005a8f0f712a9d6eeeb04ed1b09a483e;c0e668acca10ac8387fec0daeb9857ef SAMEA4025120 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440851/ERR1440851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440851/ERR1440851_2.fastq.gz 1767605 WGS PHESPV2066 RANDOM 117274014;117090027 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fcad0ea1346a0c05a23557d2208b5bdf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440851/ERR1440851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440851/ERR1440851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440851/PHESPV2066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440851/PHESPV2066.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440851/ERR1440851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440851/ERR1440851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440851/PHESPV2066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440851/PHESPV2066.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112628578;112465950 ERS1196230 ERX1511229 GENOMIC 337787701 2016-06-10 PHESPV2066 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440851/PHESPV2066.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440851/PHESPV2066.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440851 PHESPV2066 ERR1440852 PHESPV2067 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440852 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440852 f31e5ee0b868906f38872ec2a0cc3b5f;bc58223bfccedd43f8a89f4411be4794 1313 145683589 2867f8d975f3a51dc0ed2cc0ce6fff31;3b4e695e2e208cc5bfbb08d60cacd3e5 SAMEA4025121 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440852/ERR1440852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440852/ERR1440852_2.fastq.gz 1568819 WGS PHESPV2067 RANDOM 105615908;104635934 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b19f5b42b4b2212049a79ea6c73a68eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440852/ERR1440852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440852/ERR1440852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440852/PHESPV2067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440852/PHESPV2067.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440852/ERR1440852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440852/ERR1440852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440852/PHESPV2067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440852/PHESPV2067.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101542310;100584159 ERS1196231 ERX1511230 GENOMIC 304446888 2016-06-10 PHESPV2067 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440852/PHESPV2067.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440852/PHESPV2067.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440852 PHESPV2067 ERR1440854 PHESPV2069 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440854 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440854 5bb87460d736c397ccf456714eaa8641;a03385329bceb28d415fa2eb5b0f0cbc 1313 169539703 b04667966c3d5029dac35f4289c10249;56ad13c7f5465f9e9380f4f98e57401c SAMEA4025123 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440854/ERR1440854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440854/ERR1440854_2.fastq.gz 1843246 WGS PHESPV2069 RANDOM 123028055;121802651 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 22d0056abc2e587e4764dadc2a6529b5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440854/ERR1440854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440854/ERR1440854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440854/PHESPV2069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440854/PHESPV2069.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440854/ERR1440854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440854/ERR1440854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440854/PHESPV2069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440854/PHESPV2069.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118185550;116990939 ERS1196233 ERX1511232 GENOMIC 355900769 2016-06-10 PHESPV2069 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440854/PHESPV2069.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440854/PHESPV2069.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440854 PHESPV2069 ERR1440855 PHESPV2070 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440855 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440855 cc322287e13d8613512189a8cef4a996;96cc087c2fb462ce753c2736e992dc69 1313 173350677 b709326dcbdd9dd43901180fd6f85f2d;bdf232d1f9ce01b32a06ce82bc396ca6 SAMEA4025124 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440855/ERR1440855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440855/ERR1440855_2.fastq.gz 1891321 WGS PHESPV2070 RANDOM 125493806;124642488 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 779cc010c2c959c23e09957bb2160fc2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440855/ERR1440855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440855/ERR1440855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440855/PHESPV2070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440855/PHESPV2070.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440855/ERR1440855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440855/ERR1440855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440855/PHESPV2070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440855/PHESPV2070.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120536765;119714907 ERS1196234 ERX1511233 GENOMIC 363761147 2016-06-10 PHESPV2070 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440855/PHESPV2070.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440855/PHESPV2070.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440855 PHESPV2070 ERR1438809 PHESPV0019 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438809 ab8108a56724f93f694aefc24fde6e96;422772393d54db42c2d6ddbcd354323e 1313 131323287 19412140725bffbbcdfd24e441c9fb84;2b567a830f4075e0c07ac6e703d5a541 SAMEA4023078 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438809/ERR1438809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438809/ERR1438809_2.fastq.gz 1641708 WGS PHESPV0019 RANDOM 88242807;91581765 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e7e6f33ae76724c0bb4062123d4ecd0f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438809/ERR1438809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438809/ERR1438809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438809/PHESPV0019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438809/PHESPV0019.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438809/ERR1438809_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438809/ERR1438809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438809/PHESPV0019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438809/PHESPV0019.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93631672;96938456 ERS1194188 ERX1509187 GENOMIC 322139028 2016-06-10 PHESPV0019 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438809/PHESPV0019.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438809/PHESPV0019.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438809 PHESPV0019 ERR1439331 PHESPV0542 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439331 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439331 266fd70e0cd0f297e3745dae6534d2f2;84384c9ca81b02e84153b3e5f9b8f297 1313 233083087 cda7fd83921c05ceefe1b8713214ff86;f53a455166cb9a99e566ec2765d73b3a SAMEA4023600 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439331/ERR1439331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439331/ERR1439331_2.fastq.gz 2870008 WGS PHESPV0542 RANDOM 157827466;161766694 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c4d09d442ff20f84574c818af860cbb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439331/ERR1439331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439331/ERR1439331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439331/PHESPV0542.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439331/PHESPV0542.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439331/ERR1439331_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439331/ERR1439331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439331/PHESPV0542.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439331/PHESPV0542.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 166567385;170464138 ERS1194710 ERX1509709 GENOMIC 561073135 2016-06-10 PHESPV0542 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439331/PHESPV0542.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439331/PHESPV0542.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439331 PHESPV0542 ERR1439899 PHESPV1110 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439899 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439899 3410a51ceeb8c4da4e75beb056eac154;9677474a2108cb1fa010899007be3129 1313 122232134 e97e3968dab81fc459b4fe541200d8ba;30e8f735f44aa4a009d6a7e819781039 SAMEA4024168 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439899/ERR1439899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439899/ERR1439899_2.fastq.gz 1364692 WGS PHESPV1110 RANDOM 81642786;83426604 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0cf0c72a05d477d873044cd1b017902c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439899/ERR1439899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439899/ERR1439899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439899/PHESPV1110.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439899/PHESPV1110.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439899/ERR1439899_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439899/ERR1439899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439899/PHESPV1110.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439899/PHESPV1110.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86227571;88013931 ERS1195278 ERX1510277 GENOMIC 270693250 2016-06-10 PHESPV1110 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439899/PHESPV1110.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439899/PHESPV1110.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439899 PHESPV1110 ERR1439902 PHESPV1113 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439902 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439902 e881f13213e4c5da9cc5253ae81c132e;75fced190224595562ab7c46c306c5e8 1313 130594881 bc4b89a5768f85baa3f44d820ab7c3b3;84097110b9de43211a51e697e00ba38b SAMEA4024171 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439902/ERR1439902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439902/ERR1439902_2.fastq.gz 1457898 WGS PHESPV1113 RANDOM 87327471;88979145 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9669d2484783cab6e11d32931f1bb97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439902/ERR1439902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439902/ERR1439902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439902/PHESPV1113.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439902/PHESPV1113.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439902/ERR1439902_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439902/ERR1439902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439902/PHESPV1113.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439902/PHESPV1113.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92187770;93839279 ERS1195281 ERX1510280 GENOMIC 289264758 2016-06-10 PHESPV1113 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439902/PHESPV1113.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439902/PHESPV1113.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439902 PHESPV1113 ERR1439932 PHESPV1143 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439932 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439932 2cf323b4ddc83436e8b6fbcc490ec4b2;bb8dd47d442d3d507d9f8806e6dc5748 1313 89344221 3b77f89a1535d5cd9137d320e990fb2f;369919ef9828cdd3cd84a1060c244934 SAMEA4024201 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439932/ERR1439932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439932/ERR1439932_2.fastq.gz 1054911 WGS PHESPV1143 RANDOM 59625259;62136912 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d58ace01742f492a8b6a3a0bea377e88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439932/ERR1439932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439932/ERR1439932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439932/PHESPV1143.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439932/PHESPV1143.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439932/ERR1439932_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439932/ERR1439932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439932/PHESPV1143.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439932/PHESPV1143.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63282952;65768144 ERS1195311 ERX1510310 GENOMIC 209658759 2016-06-10 PHESPV1143 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439932/PHESPV1143.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439932/PHESPV1143.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439932 PHESPV1143 ERR1439944 PHESPV1155 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439944 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439944 1a0784cc46a94ee93cbdd907a7b08c16;65ce90439cbdc6b19617a25c93b5806a 1313 118495048 355abde2f93abbef0e0edbd77c920104;217138f8aca05fb5847b7a293d52c80c SAMEA4024213 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439944/ERR1439944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439944/ERR1439944_2.fastq.gz 1307023 WGS PHESPV1155 RANDOM 77866021;81722137 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 77e75c7a4b92c97d02da9a60a2356a1f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439944/ERR1439944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439944/ERR1439944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439944/PHESPV1155.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439944/PHESPV1155.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439944/ERR1439944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439944/ERR1439944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439944/PHESPV1155.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439944/PHESPV1155.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82282752;86088143 ERS1195323 ERX1510322 GENOMIC 259133054 2016-06-10 PHESPV1155 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439944/PHESPV1155.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439944/PHESPV1155.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439944 PHESPV1155 ERR1440045 PHESPV1256 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440045 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440045 d867c9c732c1d64e4e8026eaad1171be;67f28e86dcc93cb8ae85f6718e119c03 1313 195053309 9a45857990bc8be059d319af67d88238;0408bb9fdc947b2aa2863e5ba2073567 SAMEA4024314 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440045/ERR1440045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440045/ERR1440045_2.fastq.gz 2164284 WGS PHESPV1256 RANDOM 130973465;133034005 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a61c428507ec32208f5f105a025c5d39 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440045/ERR1440045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440045/ERR1440045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440045/PHESPV1256.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440045/PHESPV1256.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440045/ERR1440045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440045/ERR1440045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440045/PHESPV1256.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440045/PHESPV1256.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137814151;139845732 ERS1195424 ERX1510423 GENOMIC 429027099 2016-06-10 PHESPV1256 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440045/PHESPV1256.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440045/PHESPV1256.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440045 PHESPV1256 ERR1440323 PHESPV1538 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440323 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440323 05524425945485f4883f6eb282661be2;19f89d7260fc0266da686421f6184626 1313 186664285 58b32726b06ad6dc21b13a0fc0b61d7d;3d0e6431f9b44f617508946d50c754cd SAMEA4024592 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440323/ERR1440323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440323/ERR1440323_2.fastq.gz 2187745 WGS PHESPV1538 RANDOM 135677561;138659198 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50a0a34d459309d6d2e4a23da1f5a467 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440323/ERR1440323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440323/ERR1440323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440323/PHESPV1538.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440323/PHESPV1538.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440323/ERR1440323_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440323/ERR1440323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440323/PHESPV1538.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440323/PHESPV1538.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130149287;133105760 ERS1195702 ERX1510701 GENOMIC 429131716 2016-06-10 PHESPV1538 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440323/PHESPV1538.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440323/PHESPV1538.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440323 PHESPV1538 ERR1440186 PHESPV1400 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440186 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440186 a8be09cb1de4de4a0cfe28dd598bfea7;795f6f1718a7ee844df3d5c74cd70b99 1313 162835937 1c9283fe32c8bf7d1f3a8c90286cfc1f;4441c94e5a282a1fe79f8d4e0ea0d5bb SAMEA4024455 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440186/ERR1440186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440186/ERR1440186_2.fastq.gz 1683749 WGS PHESPV1400 RANDOM 105880813;111114918 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 04d5e17c79bb96d02cce57f8d4fddc5d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440186/ERR1440186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440186/ERR1440186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440186/PHESPV1400.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440186/PHESPV1400.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440186/ERR1440186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440186/ERR1440186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440186/PHESPV1400.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440186/PHESPV1400.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111402699;116534424 ERS1195565 ERX1510564 GENOMIC 330711443 2016-06-10 PHESPV1400 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440186/PHESPV1400.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440186/PHESPV1400.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440186 PHESPV1400 ERR1440324 PHESPV1539 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440324 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440324 d9e1cc200f0c92d79d71fc6b0c818035;d5f281681c265bcff415041c48cddebf 1313 147088798 f1af89192008a7978a2f9a140263d47f;6f281019ffddad9e176e0ff341bac0e6 SAMEA4024593 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440324/ERR1440324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440324/ERR1440324_2.fastq.gz 1728090 WGS PHESPV1539 RANDOM 106831952;110193255 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 972dba6b9d5c37a1635ca82294a29bbd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440324/ERR1440324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440324/ERR1440324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440324/PHESPV1539.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440324/PHESPV1539.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440324/ERR1440324_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440324/ERR1440324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440324/PHESPV1539.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440324/PHESPV1539.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102417199;105741533 ERS1195703 ERX1510702 GENOMIC 340528854 2016-06-10 PHESPV1539 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440324/PHESPV1539.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440324/PHESPV1539.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440324 PHESPV1539 ERR1440349 PHESPV1564 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440349 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440349 fd81099b64dcf9aef07cf90d589a518b;784565a2a73037c449f1d7bf0e24d05f 1313 162153513 ee5ed47e0ac11ccf5f1eca53c15c1ca7;881b573a27bd58bcbf51f8b06e9b08db SAMEA4024618 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440349/ERR1440349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440349/ERR1440349_2.fastq.gz 1891046 WGS PHESPV1564 RANDOM 117255705;121817565 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96fcafe2b6b9b6489f78ba033aa15d5e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440349/ERR1440349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440349/ERR1440349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440349/PHESPV1564.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440349/PHESPV1564.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440349/ERR1440349_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440349/ERR1440349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440349/PHESPV1564.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440349/PHESPV1564.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112426688;116943717 ERS1195728 ERX1510727 GENOMIC 374373346 2016-06-10 PHESPV1564 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440349/PHESPV1564.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440349/PHESPV1564.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440349 PHESPV1564 ERR1440342 PHESPV1557 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440342 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440342 8452d432852384823e77f7cdce67ccc6;63ce619eaaae167e11e2b8c15303c48b 1313 189834719 7314caaa827ac1c2dd2291e44316cac4;ab6c117c94ef26b518845714dc1298e6 SAMEA4024611 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440342/ERR1440342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440342/ERR1440342_2.fastq.gz 2221796 WGS PHESPV1557 RANDOM 137014928;142236322 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c2ed15224748601c1cd9bd3da27bdeb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440342/ERR1440342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440342/ERR1440342_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440342/PHESPV1557.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440342/PHESPV1557.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440342/ERR1440342_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440342/ERR1440342_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440342/PHESPV1557.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440342/PHESPV1557.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131448883;136644655 ERS1195721 ERX1510720 GENOMIC 439041027 2016-06-10 PHESPV1557 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440342/PHESPV1557.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440342/PHESPV1557.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440342 PHESPV1557 ERR1440427 PHESPV1642 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440427 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440427 c326f3a331856a5bfb0247bccf72c216;e735a5620887c22a6941d3468af10bf5 1313 125914677 82db5fb855d9e9d334ae2d7240508c92;75ef99f49cf1f50caddb41889625f15f SAMEA4024696 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440427/ERR1440427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440427/ERR1440427_2.fastq.gz 1390456 WGS PHESPV1642 RANDOM 90490079;92436249 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d6e72e4c428bac891bdc5042103f8116 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440427/ERR1440427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440427/ERR1440427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440427/PHESPV1642.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440427/PHESPV1642.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440427/ERR1440427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440427/ERR1440427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440427/PHESPV1642.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440427/PHESPV1642.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87041634;88978591 ERS1195806 ERX1510805 GENOMIC 271588928 2016-06-10 PHESPV1642 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440427/PHESPV1642.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440427/PHESPV1642.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440427 PHESPV1642 ERR1440354 PHESPV1569 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440354 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440354 79ea64605a0e01e5d560785334da0855;1d759f1ea7d3fbd1821453a622cb1a64 1313 169839881 8daa823277bb8e81a10e6f82eb1e20f2;8ef5c0f964a36483003c4140b82ce21e SAMEA4024623 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440354/ERR1440354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440354/ERR1440354_2.fastq.gz 1974259 WGS PHESPV1569 RANDOM 122313824;127398464 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ef550e1b5632cec7e49bb043d5dfdb4a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440354/ERR1440354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440354/ERR1440354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440354/PHESPV1569.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440354/PHESPV1569.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440354/ERR1440354_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440354/ERR1440354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440354/PHESPV1569.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440354/PHESPV1569.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117263347;122296754 ERS1195733 ERX1510732 GENOMIC 389621113 2016-06-10 PHESPV1569 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440354/PHESPV1569.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440354/PHESPV1569.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440354 PHESPV1569 ERR1440440 PHESPV1655 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440440 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440440 0d9c24ec548cfc8842aba1a58171c537;9e6f1532e2b0d8af4078b2997876cf99 1313 181546156 12696ed9732f50ef27e26c70a37db27a;33d7fc08363e48a6f8bd86d22683f915 SAMEA4024709 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440440/ERR1440440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440440/ERR1440440_2.fastq.gz 1961476 WGS PHESPV1655 RANDOM 127178981;134965117 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6215abf4e765438505a690531719a0c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440440/ERR1440440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440440/ERR1440440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440440/PHESPV1655.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440440/PHESPV1655.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440440/ERR1440440_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440440/ERR1440440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440440/PHESPV1655.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440440/PHESPV1655.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122107086;129840543 ERS1195819 ERX1510818 GENOMIC 382616768 2016-06-10 PHESPV1655 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440440/PHESPV1655.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440440/PHESPV1655.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440440 PHESPV1655 ERR1440442 PHESPV1657 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440442 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440442 49e62d1276f5ebaf4577a348ab3b1bf4;b5d34bf38243c91be58db6414d437819 1313 183243593 c675cf0358d7eb3554774161277c56c1;2789d7de5be3cb66c6d1f5a12833fbb6 SAMEA4024711 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440442/ERR1440442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440442/ERR1440442_2.fastq.gz 1989894 WGS PHESPV1657 RANDOM 132305029;131631330 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f64879c01f61af6ecff75b8f383ecdec ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440442/ERR1440442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440442/ERR1440442_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440442/PHESPV1657.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440442/PHESPV1657.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440442/ERR1440442_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440442/ERR1440442_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440442/PHESPV1657.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440442/PHESPV1657.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127120687;126466609 ERS1195821 ERX1510820 GENOMIC 381445336 2016-06-10 PHESPV1657 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440442/PHESPV1657.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440442/PHESPV1657.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440442 PHESPV1657 ERR1440458 PHESPV1673 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440458 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440458 dbf6acad2a419dc44b1a65c644673f19;b99c888ff0de8221c63aa39fca82b0f2 1313 126322580 380f55b5d72a2f6af5b8c09e7259883a;a27210b69e060c3aa29e3e356ba33372 SAMEA4024727 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440458/ERR1440458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440458/ERR1440458_2.fastq.gz 1392443 WGS PHESPV1673 RANDOM 90664629;91812795 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ab777146566db2d252dac2efaad632c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440458/ERR1440458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440458/ERR1440458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440458/PHESPV1673.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440458/PHESPV1673.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440458/ERR1440458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440458/ERR1440458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440458/PHESPV1673.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440458/PHESPV1673.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87135696;88292638 ERS1195837 ERX1510836 GENOMIC 270736853 2016-06-10 PHESPV1673 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440458/PHESPV1673.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440458/PHESPV1673.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440458 PHESPV1673 ERR1440465 PHESPV1680 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440465 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440465 e5bed0619a4e69e5eb17f6d1b12aebb7;790d5f0135eb13f9a83539635db8c6f7 1313 140315753 1acf5b08ba541bcd32e42e47a169640b;5610d77f2acc8afacab77393a7b63367 SAMEA4024734 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440465/ERR1440465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440465/ERR1440465_2.fastq.gz 1582600 WGS PHESPV1680 RANDOM 101580292;101761166 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ca7173888a3830cd04bfbe59a4ac7dd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440465/ERR1440465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440465/ERR1440465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440465/PHESPV1680.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440465/PHESPV1680.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440465/ERR1440465_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440465/ERR1440465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440465/PHESPV1680.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440465/PHESPV1680.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97477767;97679928 ERS1195844 ERX1510843 GENOMIC 304574263 2016-06-10 PHESPV1680 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440465/PHESPV1680.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440465/PHESPV1680.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440465 PHESPV1680 ERR1440464 PHESPV1679 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440464 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440464 24240809975c9c125169b5efb0ab58df;925591a4d4230ae8906b5811f36a9095 1313 153862076 6e760b580d7d8d1d999f0207656e2ea0;fa107493ec85c4025eb4915da8690797 SAMEA4024733 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440464/ERR1440464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440464/ERR1440464_2.fastq.gz 1743015 WGS PHESPV1679 RANDOM 111478221;111416815 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 32aa31c1dbbfc154ee5385a0a9997864 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440464/ERR1440464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440464/ERR1440464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440464/PHESPV1679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440464/PHESPV1679.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440464/ERR1440464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440464/ERR1440464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440464/PHESPV1679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440464/PHESPV1679.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106870266;106826340 ERS1195843 ERX1510842 GENOMIC 334050510 2016-06-10 PHESPV1679 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440464/PHESPV1679.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440464/PHESPV1679.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440464 PHESPV1679 ERR1440496 PHESPV1711 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440496 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440496 2a9bdc9e79fca783110e0fb58b8e077d;781bd52fdf1a52d58ae519df09c93591 1313 148082946 c93c34187ca0d3ed14116b5d42a11199;76b04c11223c7143e7cf004ee4889c1c SAMEA4024765 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440496/ERR1440496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440496/ERR1440496_2.fastq.gz 1646079 WGS PHESPV1711 RANDOM 107186085;108493486 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2adbd7b840d04a9709fa4e76009013d2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440496/ERR1440496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440496/ERR1440496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440496/PHESPV1711.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440496/PHESPV1711.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440496/ERR1440496_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440496/ERR1440496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440496/PHESPV1711.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440496/PHESPV1711.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102972121;104281564 ERS1195875 ERX1510874 GENOMIC 322695974 2016-06-10 PHESPV1711 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440496/PHESPV1711.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440496/PHESPV1711.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440496 PHESPV1711 ERR1439160 PHESPV0371 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439160 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439160 b808ceb08efcce291521db39dd0f16e1;d7f1897f9bfce526c3c018f62cb6bdfb 1313 110591848 b4b498cec5ed839ad2e71e5a4c9f15e5;8fc47cbf4d9448781c4d68802122bda5 SAMEA4023429 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439160/ERR1439160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439160/ERR1439160_2.fastq.gz 1192783 WGS PHESPV0371 RANDOM 79496734;79970553 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aee50132c21b4c47d44ca6e3fe42b467 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439160/ERR1439160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439160/ERR1439160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439160/PHESPV0371.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439160/PHESPV0371.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439160/ERR1439160_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439160/ERR1439160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439160/PHESPV0371.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439160/PHESPV0371.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76468265;76947992 ERS1194539 ERX1509538 GENOMIC 233303926 2016-06-10 PHESPV0371 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439160/PHESPV0371.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439160/PHESPV0371.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439160 PHESPV0371 ERR1440848 PHESPV2063 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440848 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440848 8c8f05d57e9113b8cdb24bab0b3cc428;706de5314065a1d41355985952f11158 1313 163568711 929c2bfc80eb0da65412495454df4350;7aea611a47dfc74b782156146db531d8 SAMEA4025117 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440848/ERR1440848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440848/ERR1440848_2.fastq.gz 1766834 WGS PHESPV2063 RANDOM 117666338;118089305 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a21df90d7eb157dfe5557305a975574 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440848/ERR1440848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440848/ERR1440848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440848/PHESPV2063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440848/PHESPV2063.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440848/ERR1440848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440848/ERR1440848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440848/PHESPV2063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440848/PHESPV2063.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112970392;113413247 ERS1196227 ERX1511226 GENOMIC 340182154 2016-06-10 PHESPV2063 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440848/PHESPV2063.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440848/PHESPV2063.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440848 PHESPV2063 ERR1438866 PHESPV0076 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438866 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438866 628f61b488680a3fa2644d404abe5dc2;ad03381dbf569a41301244dfb2a2127c 1313 83167114 5bf6782852dc4ca289113180fc5d6df4;e9805162d3c446f2a80bcf71a225bd85 SAMEA4023135 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438866/ERR1438866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438866/ERR1438866_2.fastq.gz 972977 WGS PHESPV0076 RANDOM 55270243;58106582 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline acba7443f3b4dfd3f8ff5490cb9d76b2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438866/ERR1438866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438866/ERR1438866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438866/PHESPV0076.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438866/PHESPV0076.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438866/ERR1438866_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438866/ERR1438866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438866/PHESPV0076.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438866/PHESPV0076.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58668947;61468163 ERS1194245 ERX1509244 GENOMIC 193407614 2016-06-10 PHESPV0076 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438866/PHESPV0076.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438866/PHESPV0076.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438866 PHESPV0076 ERR1440507 PHESPV1722 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440507 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440507 02fceb5ca0d41e108058b51c41eddbc2;965dddb339ff36c69a6604a150f246a3 1313 131827586 2d222d73ac6936ff03d61edbcdf3560b;032a775f019ca7a7d6c283164c9ad0d9 SAMEA4024776 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440507/ERR1440507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440507/ERR1440507_2.fastq.gz 1468012 WGS PHESPV1722 RANDOM 95207947;95427838 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 06908fbc78f164bfddd3b7d8ec53bb02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440507/ERR1440507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440507/ERR1440507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440507/PHESPV1722.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440507/PHESPV1722.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440507/ERR1440507_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440507/ERR1440507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440507/PHESPV1722.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440507/PHESPV1722.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91477966;91719704 ERS1195886 ERX1510885 GENOMIC 284375839 2016-06-10 PHESPV1722 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440507/PHESPV1722.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440507/PHESPV1722.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440507 PHESPV1722 ERR1438795 PHESPV0005 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438795 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438795 90e95b69a1984771a528e0d95e1fbeda;cd24b34bde78094ab6e554ee57abc53c 1313 129718715 54a9033129b551d09f526201d371f096;e6cc3b205d9e33f95e77df056787bcdc SAMEA4023064 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438795/ERR1438795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438795/ERR1438795_2.fastq.gz 1479942 WGS PHESPV0005 RANDOM 87908378;88541389 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e0cdff7d92708f5f535c1f8c76d0e284 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438795/ERR1438795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438795/ERR1438795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438795/PHESPV0005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438795/PHESPV0005.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438795/ERR1438795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438795/ERR1438795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438795/PHESPV0005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438795/PHESPV0005.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92837068;93484920 ERS1194174 ERX1509173 GENOMIC 293744460 2016-06-10 PHESPV0005 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438795/PHESPV0005.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438795/PHESPV0005.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438795 PHESPV0005 ERR1438797 PHESPV0007 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438797 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438797 da087dcd83d081513e161461ea62104e;66055f782589018e227ed3c7319629e7 1313 139845390 8d7e72f2af1b99ba86de37e4f1ce11c6;a106ffbf27c47757feea224d46776600 SAMEA4023066 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438797/ERR1438797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438797/ERR1438797_2.fastq.gz 1592844 WGS PHESPV0007 RANDOM 94514857;96089368 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 299847610e62685e99f7ef9f43c0014a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438797/ERR1438797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438797/ERR1438797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438797/PHESPV0007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438797/PHESPV0007.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438797/ERR1438797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438797/ERR1438797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438797/PHESPV0007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438797/PHESPV0007.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99806752;101387186 ERS1194176 ERX1509175 GENOMIC 316087161 2016-06-10 PHESPV0007 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438797/PHESPV0007.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438797/PHESPV0007.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438797 PHESPV0007 ERR1438811 PHESPV0021 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438811 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438811 6c4f95616b591d9860ecc871f90ce597;697c057c2afc3e9ad4f9727449a1b467 1313 96015566 ae9b95ed2b7749f3e4154a529418c768;f3cb6866335f4d5a0b452e9290e8c86b SAMEA4023080 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438811/ERR1438811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438811/ERR1438811_2.fastq.gz 1107798 WGS PHESPV0021 RANDOM 64563810;65877590 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4c88b61d22a44fbb928b06dd534c76d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438811/ERR1438811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438811/ERR1438811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438811/PHESPV0021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438811/PHESPV0021.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438811/ERR1438811_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438811/ERR1438811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438811/PHESPV0021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438811/PHESPV0021.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68354664;69671288 ERS1194190 ERX1509189 GENOMIC 219871513 2016-06-10 PHESPV0021 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438811/PHESPV0021.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438811/PHESPV0021.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438811 PHESPV0021 ERR1438796 PHESPV0006 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438796 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438796 60c8827de3b344e9fb02f6389876bfa8;6a397a4a9b39972916f61ad4db107fa3 1313 173670745 9d45f285d6dd4bb3d2a93795d7e7660e;ca880b0e41b482747d7298a82ec1379e SAMEA4023065 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438796/ERR1438796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438796/ERR1438796_2.fastq.gz 1987693 WGS PHESPV0006 RANDOM 117537485;119140801 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 962e56d64f85a41bab425678f91f4dcd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438796/ERR1438796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438796/ERR1438796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438796/PHESPV0006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438796/PHESPV0006.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438796/ERR1438796_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438796/ERR1438796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438796/PHESPV0006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438796/PHESPV0006.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123940633;125555110 ERS1194175 ERX1509174 GENOMIC 394479669 2016-06-10 PHESPV0006 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438796/PHESPV0006.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438796/PHESPV0006.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438796 PHESPV0006 ERR1438798 PHESPV0008 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438798 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438798 cc6f9f9423fee4635367c67852b157a6;12356751f43058a22b52d5cf9a7b32b1 1313 132016779 0ecb0296c59b8c6787468712f6012380;91d8acf49a9a578ce0a018a9e8d6455c SAMEA4023067 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438798/ERR1438798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438798/ERR1438798_2.fastq.gz 1491021 WGS PHESPV0008 RANDOM 88071666;89687060 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5c807dfc77080cd788204301249cdac ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438798/ERR1438798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438798/ERR1438798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438798/PHESPV0008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438798/PHESPV0008.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438798/ERR1438798_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438798/ERR1438798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438798/PHESPV0008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438798/PHESPV0008.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92967708;94572046 ERS1194177 ERX1509176 GENOMIC 295223802 2016-06-10 PHESPV0008 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438798/PHESPV0008.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438798/PHESPV0008.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438798 PHESPV0008 ERR1439067 PHESPV0278 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439067 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439067 383667751429afe864bb187f5974e0d0;9f4a160333d02dcfdc62176b0c753e11 1313 113842655 9fc3e849412eb2acacbcd7b58348f5d2;7e0d8fce3be6d83d66ce92137cf83406 SAMEA4023336 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439067/ERR1439067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439067/ERR1439067_2.fastq.gz 956962 WGS PHESPV0278 RANDOM 68383176;73218874 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5dd4ed87d9b7a87623c39f9a620cb81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439067/ERR1439067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439067/ERR1439067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439067/PHESPV0278.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439067/PHESPV0278.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439067/ERR1439067_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439067/ERR1439067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439067/PHESPV0278.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439067/PHESPV0278.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71718539;76548911 ERS1194446 ERX1509445 GENOMIC 187427488 2016-06-10 PHESPV0278 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439067/PHESPV0278.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439067/PHESPV0278.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439067 PHESPV0278 ERR1439188 PHESPV0399 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439188 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439188 67b43e2c34caca65147a24133b2f5e5d;fb16f11a8fad1ef8c73e6b628abe90d4 1313 224412697 604b182718191a8cdc84b6c698444e57;71162100e70cefde9c7869b70b2f0d54 SAMEA4023457 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439188/ERR1439188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439188/ERR1439188_2.fastq.gz 2767557 WGS PHESPV0399 RANDOM 151918477;156139840 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad28a962004d8b5193b9073d785877a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439188/ERR1439188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439188/ERR1439188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439188/PHESPV0399.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439188/PHESPV0399.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439188/ERR1439188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439188/ERR1439188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439188/PHESPV0399.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439188/PHESPV0399.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 160441579;164620227 ERS1194567 ERX1509566 GENOMIC 541303157 2016-06-10 PHESPV0399 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439188/PHESPV0399.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439188/PHESPV0399.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439188 PHESPV0399 ERR1439275 PHESPV0486 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439275 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439275 e35d022844543b8d30288847ee79c7d0;1661d35744e61c30a59d9ff0350c3a12 1313 244479929 229d98e4d21ff260ed9d4c71ae8e21ae;efb1fe275cd23f1808317d483db1fd7f SAMEA4023544 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439275/ERR1439275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439275/ERR1439275_2.fastq.gz 3007790 WGS PHESPV0486 RANDOM 165026869;170829047 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cd373dd6bb6a5b6b4001b8732c900bbb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439275/ERR1439275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439275/ERR1439275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439275/PHESPV0486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439275/PHESPV0486.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439275/ERR1439275_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439275/ERR1439275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439275/PHESPV0486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439275/PHESPV0486.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 174239339;180007329 ERS1194654 ERX1509653 GENOMIC 587688747 2016-06-10 PHESPV0486 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439275/PHESPV0486.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439275/PHESPV0486.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439275 PHESPV0486 ERR1439896 PHESPV1107 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439896 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439896 ec4804807c3e0c7df9c372e116e762ab;f95e4504ea2119d224fc05bbfc6b18ed 1313 175730424 c70270845b47eac975edde70e02f6633;76ceda05c824599cd0aaf7b4f0e6288f SAMEA4024165 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439896/ERR1439896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439896/ERR1439896_2.fastq.gz 1973167 WGS PHESPV1107 RANDOM 118068140;120250268 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cc6ed3df791a0e7d0625a65808a0ce08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439896/ERR1439896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439896/ERR1439896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439896/PHESPV1107.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439896/PHESPV1107.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439896/ERR1439896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439896/ERR1439896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439896/PHESPV1107.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439896/PHESPV1107.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124398424;126596607 ERS1195275 ERX1510274 GENOMIC 391698759 2016-06-10 PHESPV1107 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439896/PHESPV1107.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439896/PHESPV1107.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439896 PHESPV1107 ERR1439497 PHESPV0708 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439497 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439497 eb9d49e6887dc3f7ca7ff076c843e2e8;078f704f4ff9139381dfd06e3ffc87bd 1313 122970853 787a18f90bdfdabc03c3f06dc35691ef;7be88942d8c46e46acf15ac37bcf8114 SAMEA4023766 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439497/ERR1439497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439497/ERR1439497_2.fastq.gz 1491187 WGS PHESPV0708 RANDOM 82852536;86103657 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8067305b75ee4d84fc940e62284798ca ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439497/ERR1439497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439497/ERR1439497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439497/PHESPV0708.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439497/PHESPV0708.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439497/ERR1439497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439497/ERR1439497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439497/PHESPV0708.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439497/PHESPV0708.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87846331;91157071 ERS1194876 ERX1509875 GENOMIC 291883506 2016-06-10 PHESPV0708 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439497/PHESPV0708.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439497/PHESPV0708.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439497 PHESPV0708 ERR1439530 PHESPV0741 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439530 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439530 816e3d9e1b7b2ce26911903c49f12d12;49521304b3be037ef91692e1adc959be 1313 132097698 794eb35e4c0fb3a186f9539b06b31660;b6d0f3bd99169d4e23ce27dd05990f78 SAMEA4023799 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439530/ERR1439530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439530/ERR1439530_2.fastq.gz 1596798 WGS PHESPV0741 RANDOM 90052348;90636536 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5fc56b69ace0f65add48cec42f241c6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439530/ERR1439530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439530/ERR1439530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439530/PHESPV0741.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439530/PHESPV0741.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439530/ERR1439530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439530/ERR1439530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439530/PHESPV0741.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439530/PHESPV0741.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95358402;95944418 ERS1194909 ERX1509908 GENOMIC 312023862 2016-06-10 PHESPV0741 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439530/PHESPV0741.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439530/PHESPV0741.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439530 PHESPV0741 ERR1439911 PHESPV1122 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439911 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439911 0ebc5415c7d874449f8df71cbe634e0f;c081fa2eab363b2e0a776d84d7675dc9 1313 151948952 819c78321927c56399d8ef12fdf86e19;660b183e5e03bb60c45c871351e4935e SAMEA4024180 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439911/ERR1439911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439911/ERR1439911_2.fastq.gz 1697745 WGS PHESPV1122 RANDOM 101887856;103849583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c4c76e4d927bb685f8bf1c0ff4addd19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439911/ERR1439911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439911/ERR1439911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439911/PHESPV1122.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439911/PHESPV1122.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439911/ERR1439911_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439911/ERR1439911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439911/PHESPV1122.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439911/PHESPV1122.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107485152;109452443 ERS1195290 ERX1510289 GENOMIC 336844060 2016-06-10 PHESPV1122 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439911/PHESPV1122.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439911/PHESPV1122.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439911 PHESPV1122 ERR1439935 PHESPV1146 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439935 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439935 b9a5b675b8e5ee830ff8ac7977d5ab0d;d39dff478e63f170a2efff8fc32217ee 1313 90618612 e2c2b2ae01ab93f274b6e6f98971cde6;948d0a214037e109703e0393fe3ad17e SAMEA4024204 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439935/ERR1439935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439935/ERR1439935_2.fastq.gz 1068788 WGS PHESPV1146 RANDOM 60678128;63255458 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 571f093e1863157550c4d979935f3b6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439935/ERR1439935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439935/ERR1439935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439935/PHESPV1146.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439935/PHESPV1146.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439935/ERR1439935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439935/ERR1439935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439935/PHESPV1146.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439935/PHESPV1146.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64370800;66935752 ERS1195314 ERX1510313 GENOMIC 212557905 2016-06-10 PHESPV1146 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439935/PHESPV1146.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439935/PHESPV1146.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439935 PHESPV1146 ERR1439942 PHESPV1153 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439942 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439942 6a29fe935dbf6cffb751cd187924a819;3eec3cc012ce3e2c5a19ee9554bdb3c3 1313 104296836 755c279b34f9708cda354704e128d25e;8d8e1548e4498904d8cc25ca559e2984 SAMEA4024211 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439942/ERR1439942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439942/ERR1439942_2.fastq.gz 1231204 WGS PHESPV1153 RANDOM 69290272;72572788 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7e14fc52fd90ebd28be98346d26fe78a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439942/ERR1439942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439942/ERR1439942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439942/PHESPV1153.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439942/PHESPV1153.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439942/ERR1439942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439942/ERR1439942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439942/PHESPV1153.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439942/PHESPV1153.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73451114;76691973 ERS1195321 ERX1510320 GENOMIC 244499851 2016-06-10 PHESPV1153 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439942/PHESPV1153.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439942/PHESPV1153.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439942 PHESPV1153 ERR1440150 PHESPV1363 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440150 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440150 9c103f8c37641c535085e10c3c1bb157;b14b24fdb531cd202ed4a3dd3266241d 1313 133537169 b2fb7cf253df1d0620ab937195c74246;fa2f95fc702aae86387ea3e8fe957932 SAMEA4024419 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440150/ERR1440150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440150/ERR1440150_2.fastq.gz 1514026 WGS PHESPV1363 RANDOM 89139895;91995004 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 088ae7007bb592f3dbd61de6e84562dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440150/ERR1440150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440150/ERR1440150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440150/PHESPV1363.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440150/PHESPV1363.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440150/ERR1440150_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440150/ERR1440150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440150/PHESPV1363.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440150/PHESPV1363.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94174520;96914557 ERS1195529 ERX1510528 GENOMIC 300637567 2016-06-10 PHESPV1363 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440150/PHESPV1363.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440150/PHESPV1363.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440150 PHESPV1363 ERR1440179 PHESPV1392 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440179 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440179 11c3f696e2ea72dbe2ce134f9d440945;97cc0f41d77ae6842cb21e5e501f5704 1313 142329972 0f45c5722d4def44d0dd2b550e673b7b;911c3e7cd7cb5058bd048275075f8ba5 SAMEA4024448 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440179/ERR1440179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440179/ERR1440179_2.fastq.gz 1486244 WGS PHESPV1392 RANDOM 94168947;95952265 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c251471d087887b6d9f68d915ba46c18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440179/ERR1440179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440179/ERR1440179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440179/PHESPV1392.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440179/PHESPV1392.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440179/ERR1440179_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440179/ERR1440179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440179/PHESPV1392.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440179/PHESPV1392.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99103632;100830670 ERS1195558 ERX1510557 GENOMIC 293012390 2016-06-10 PHESPV1392 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440179/PHESPV1392.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440179/PHESPV1392.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440179 PHESPV1392 ERR1440238 PHESPV1452 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440238 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440238 bfd92c8b63bd12fc20d2e103a78b4c81;223df1f4c91bac00b1180c9a93e08bcc 1313 195479445 3237478edee27ddbd7c76553c9f55c17;71ed17ffd8f35168f5baf287189afa95 SAMEA4024507 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440238/ERR1440238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440238/ERR1440238_2.fastq.gz 2335113 WGS PHESPV1452 RANDOM 130278296;137267892 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63c15ca40e149eadd7807b465f4cb940 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440238/ERR1440238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440238/ERR1440238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440238/PHESPV1452.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440238/PHESPV1452.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440238/ERR1440238_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440238/ERR1440238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440238/PHESPV1452.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440238/PHESPV1452.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137512179;144421019 ERS1195617 ERX1510616 GENOMIC 463618142 2016-06-10 PHESPV1452 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440238/PHESPV1452.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440238/PHESPV1452.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440238 PHESPV1452 ERR1440263 PHESPV1478 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440263 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440263 3cb1dce88fd98cf957e0a39b468d14b0;fe84d226c4b93d9392d88733b804b650 1313 151608385 b958d73b3bccf8a846b908086081acdb;820d5ffc0a9d9dcb92e8d6c0198d7350 SAMEA4024532 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440263/ERR1440263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440263/ERR1440263_2.fastq.gz 1820927 WGS PHESPV1478 RANDOM 102649259;105533954 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c7e4687b5af95bda6b5cfbbe7a7def91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440263/ERR1440263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440263/ERR1440263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440263/PHESPV1478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440263/PHESPV1478.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440263/ERR1440263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440263/ERR1440263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440263/PHESPV1478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440263/PHESPV1478.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108526716;111407592 ERS1195642 ERX1510641 GENOMIC 361797087 2016-06-10 PHESPV1478 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440263/PHESPV1478.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440263/PHESPV1478.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440263 PHESPV1478 ERR1440277 PHESPV1492 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440277 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440277 3811b434a8ea724b8c1a42f01c7d6d12;291dfba0c21e270365cf74d96b1dc2cf 1313 152502689 d1d0f31bddfbf8c34bc5ef77a8cf4465;57f02a041130723291145a341bc69ec5 SAMEA4024546 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440277/ERR1440277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440277/ERR1440277_2.fastq.gz 1814094 WGS PHESPV1492 RANDOM 101651809;107276958 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9ec6230bc0067afc5e087714d689dd28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440277/ERR1440277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440277/ERR1440277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440277/PHESPV1492.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440277/PHESPV1492.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440277/ERR1440277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440277/ERR1440277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440277/PHESPV1492.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440277/PHESPV1492.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107515769;113119429 ERS1195656 ERX1510655 GENOMIC 360033404 2016-06-10 PHESPV1492 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440277/PHESPV1492.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440277/PHESPV1492.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440277 PHESPV1492 ERR1440373 PHESPV1588 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440373 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440373 811c42cc42d9a2a06787163d7eaf3570;da561927df4cd9faf16ab04ce849ac04 1313 188199199 bb55d92ed6fe30af11fa5d01f10bfb71;40a7ba525bfd8fee4597ac758d9518f5 SAMEA4024642 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440373/ERR1440373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440373/ERR1440373_2.fastq.gz 2199055 WGS PHESPV1588 RANDOM 135909303;140859623 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cca79cf15f66d2696b9cf2e30768b789 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440373/ERR1440373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440373/ERR1440373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440373/PHESPV1588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440373/PHESPV1588.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440373/ERR1440373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440373/ERR1440373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440373/PHESPV1588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440373/PHESPV1588.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130390679;135309335 ERS1195752 ERX1510751 GENOMIC 434080606 2016-06-10 PHESPV1588 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440373/PHESPV1588.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440373/PHESPV1588.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440373 PHESPV1588 ERR1440375 PHESPV1590 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440375 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440375 0030a0facac6025e46560a3c91ee2c55;4439ff74899a16bb1734ca491923420e 1313 136944890 e72fb12f0964532332095d253a9a0938;ebeb94f5effda809d61949e9051a4ce2 SAMEA4024644 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440375/ERR1440375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440375/ERR1440375_2.fastq.gz 1596983 WGS PHESPV1590 RANDOM 98929458;102673234 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 94a0a455b4cb839ba83ec2454f5aaf01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440375/ERR1440375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440375/ERR1440375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440375/PHESPV1590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440375/PHESPV1590.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440375/ERR1440375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440375/ERR1440375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440375/PHESPV1590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440375/PHESPV1590.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94870275;98565868 ERS1195754 ERX1510753 GENOMIC 314372222 2016-06-10 PHESPV1590 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440375/PHESPV1590.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440375/PHESPV1590.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440375 PHESPV1590 ERR1440388 PHESPV1603 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440388 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440388 66192321650d11a0fe8ef6f283b8c2f7;e577d9c6d953263aeb47ef921903678b 1313 93270051 44a1804d65334d2e3594d435160bf276;f2eaeb09439d810cd57e8f02834a5e50 SAMEA4024657 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440388/ERR1440388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440388/ERR1440388_2.fastq.gz 1023856 WGS PHESPV1603 RANDOM 67364660;68548815 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e72a260981610082b9316c5e9a607830 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440388/ERR1440388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440388/ERR1440388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440388/PHESPV1603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440388/PHESPV1603.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440388/ERR1440388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440388/ERR1440388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440388/PHESPV1603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440388/PHESPV1603.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64817541;65997504 ERS1195767 ERX1510766 GENOMIC 201593410 2016-06-10 PHESPV1603 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440388/PHESPV1603.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440388/PHESPV1603.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440388 PHESPV1603 ERR1440395 PHESPV1610 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440395 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440395 76e8a7cff5908d4ae2738f0ee0fd4763;b5f0bcd88369fb8796a4839ef36dafbb 1313 182707776 f98307853ba8d7996483c9c99b54aa43;ea360046f81c0d4d847399dfc1dab034 SAMEA4024664 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440395/ERR1440395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440395/ERR1440395_2.fastq.gz 2123879 WGS PHESPV1610 RANDOM 131462091;137053853 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 558b44f58313e4098b383c62d8b87030 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440395/ERR1440395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440395/ERR1440395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440395/PHESPV1610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440395/PHESPV1610.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440395/ERR1440395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440395/ERR1440395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440395/PHESPV1610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440395/PHESPV1610.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126061865;131610067 ERS1195774 ERX1510773 GENOMIC 418900739 2016-06-10 PHESPV1610 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440395/PHESPV1610.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440395/PHESPV1610.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440395 PHESPV1610 ERR1440398 PHESPV1613 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440398 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440398 0532450f0f01f14b4d6427078c9e131c;8fffda433f6faaadeece1b8f311a4dbc 1313 134383999 7345af9bd8a7fdb917df06fe3881431d;d4f1a5cb94b07a056d631f4e52221a00 SAMEA4024667 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440398/ERR1440398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440398/ERR1440398_2.fastq.gz 1488984 WGS PHESPV1613 RANDOM 96524159;98591037 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c60df44d23a5136d5144b9cd928dd9f4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440398/ERR1440398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440398/ERR1440398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440398/PHESPV1613.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440398/PHESPV1613.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440398/ERR1440398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440398/ERR1440398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440398/PHESPV1613.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440398/PHESPV1613.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92770035;94831476 ERS1195777 ERX1510776 GENOMIC 289640774 2016-06-10 PHESPV1613 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440398/PHESPV1613.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440398/PHESPV1613.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440398 PHESPV1613 ERR1440400 PHESPV1615 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440400 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440400 b0b1f13847f544e7bda45c0d48bcc1ca;6c1a1d05cc3148470d6e423504f80774 1313 148324043 7b62f3484cb9bfaf6f929f03313acd37;82327f2227edd9836b3bb9b5851d7b74 SAMEA4024669 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440400/ERR1440400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440400/ERR1440400_2.fastq.gz 1634703 WGS PHESPV1615 RANDOM 106558133;108846693 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f210f0749e51fc2dc173646bd21ed304 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440400/ERR1440400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440400/ERR1440400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440400/PHESPV1615.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440400/PHESPV1615.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440400/ERR1440400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440400/ERR1440400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440400/PHESPV1615.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440400/PHESPV1615.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102358613;104635729 ERS1195779 ERX1510778 GENOMIC 319351986 2016-06-10 PHESPV1615 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440400/PHESPV1615.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440400/PHESPV1615.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440400 PHESPV1615 ERR1440402 PHESPV1617 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440402 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440402 58d37325b4f938cb29bec75e27077b21;291403199ffe07f7b2daae7c55de947a 1313 122721582 c8fe34af747e09f4ada2a2636623fd27;380c6acad948309d390f3314c7c39f7f SAMEA4024671 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440402/ERR1440402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440402/ERR1440402_2.fastq.gz 1420626 WGS PHESPV1617 RANDOM 88721879;91744237 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e0e3f09a1ecc753d4fedf7b9c43dc3e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440402/ERR1440402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440402/ERR1440402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440402/PHESPV1617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440402/PHESPV1617.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440402/ERR1440402_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440402/ERR1440402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440402/PHESPV1617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440402/PHESPV1617.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85176730;88154211 ERS1195781 ERX1510780 GENOMIC 280217592 2016-06-10 PHESPV1617 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440402/PHESPV1617.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440402/PHESPV1617.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440402 PHESPV1617 ERR1440408 PHESPV1623 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440408 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440408 f0f1aa370aa80ec93337568c23ffc3ff;cffbea0182a151b6ac515c5a88a34387 1313 70302228 4cc549f7235f74c21f8d4a7767596a21;631b787a5d113df5f4c2ebf9174b6641 SAMEA4024677 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440408/ERR1440408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440408/ERR1440408_2.fastq.gz 861086 WGS PHESPV1623 RANDOM 47304827;48854050 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7104db3a5eed052ec24a9027ab9f1d86 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440408/ERR1440408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440408/ERR1440408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440408/PHESPV1623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440408/PHESPV1623.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440408/ERR1440408_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440408/ERR1440408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440408/PHESPV1623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440408/PHESPV1623.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50340117;51832288 ERS1195787 ERX1510786 GENOMIC 171074143 2016-06-10 PHESPV1623 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440408/PHESPV1623.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440408/PHESPV1623.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440408 PHESPV1623 ERR1440409 PHESPV1624 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440409 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440409 79125ed01c03a0e3debfb004fa860a93;f542d9cbb516764b13084dd43c7e525c 1313 60301300 d44bd6f73506f843b2e6f420fffdf170;ab9084047a9d2a2146dff2ade5ba5eb0 SAMEA4024678 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440409/ERR1440409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440409/ERR1440409_2.fastq.gz 732363 WGS PHESPV1624 RANDOM 40140861;41398982 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9b82b5d719e40c81c3b4e6cc22420d2f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440409/ERR1440409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440409/ERR1440409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440409/PHESPV1624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440409/PHESPV1624.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440409/ERR1440409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440409/ERR1440409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440409/PHESPV1624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440409/PHESPV1624.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 42737494;43941057 ERS1195788 ERX1510787 GENOMIC 145212304 2016-06-10 PHESPV1624 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440409/PHESPV1624.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440409/PHESPV1624.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440409 PHESPV1624 ERR1440415 PHESPV1630 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440415 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440415 d3ab281dc82d8f9e26c3c5844e3d4f75;9d0785772222b32981fe84af78889d40 1313 131028550 6fc2a43952fc9d3043bfdbf7830f4ae8;7a40ee72e45fb875ed586c4ab3f0c465 SAMEA4024684 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440415/ERR1440415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440415/ERR1440415_2.fastq.gz 1449438 WGS PHESPV1630 RANDOM 94617789;95768933 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9e4a75379b34aabde8bde0f232e6ddee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440415/ERR1440415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440415/ERR1440415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440415/PHESPV1630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440415/PHESPV1630.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440415/ERR1440415_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440415/ERR1440415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440415/PHESPV1630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440415/PHESPV1630.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91000662;92152076 ERS1195794 ERX1510793 GENOMIC 282589399 2016-06-10 PHESPV1630 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440415/PHESPV1630.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440415/PHESPV1630.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440415 PHESPV1630 ERR1440421 PHESPV1636 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440421 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440421 568c7f2bc6954fe33759c4376ecee839;c479827791773894772969ce3fdf4ed9 1313 117749865 c72c8f2c4d0b38e7f7ad4a23b0968028;31f46b103edfa1d35f66d2a7d79467f7 SAMEA4024690 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440421/ERR1440421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440421/ERR1440421_2.fastq.gz 1307860 WGS PHESPV1636 RANDOM 85094736;86161878 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90c67e8131a6e68261ecaca68ce5dda8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440421/ERR1440421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440421/ERR1440421_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440421/PHESPV1636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440421/PHESPV1636.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440421/ERR1440421_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440421/ERR1440421_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440421/PHESPV1636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440421/PHESPV1636.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81878169;82947681 ERS1195800 ERX1510799 GENOMIC 255122228 2016-06-10 PHESPV1636 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440421/PHESPV1636.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440421/PHESPV1636.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440421 PHESPV1636 ERR1440423 PHESPV1638 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440423 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440423 1a7ea3f7676d61068d18f48796a2afcf;92062b04781aad3259fecc5443742d07 1313 165051352 887b3b81cae27f06d0125420319c8c98;b5da74bc2c5c4a5ac1cbfb74859b2224 SAMEA4024692 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440423/ERR1440423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440423/ERR1440423_2.fastq.gz 1826800 WGS PHESPV1638 RANDOM 118923052;121066683 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a27e0c2897bccdfa83ad88c4c73b4141 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440423/ERR1440423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440423/ERR1440423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440423/PHESPV1638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440423/PHESPV1638.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440423/ERR1440423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440423/ERR1440423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440423/PHESPV1638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440423/PHESPV1638.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114199331;116334657 ERS1195802 ERX1510801 GENOMIC 357069192 2016-06-10 PHESPV1638 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440423/PHESPV1638.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440423/PHESPV1638.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440423 PHESPV1638 ERR1440424 PHESPV1639 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440424 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440424 85ce5e611f4c33e9d55acfd8687b872b;1f20f4bccd3da536b07604f71522e0c0 1313 145240956 d3bc0a6849853bc80edae03c723f8c41;3b171119fd7adaaae8c2b84fe700bcb5 SAMEA4024693 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440424/ERR1440424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440424/ERR1440424_2.fastq.gz 1578776 WGS PHESPV1639 RANDOM 103122440;107434012 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0095fc249e343bc15ca72404292cbdce ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440424/ERR1440424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440424/ERR1440424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440424/PHESPV1639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440424/PHESPV1639.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440424/ERR1440424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440424/ERR1440424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440424/PHESPV1639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440424/PHESPV1639.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99090204;103364320 ERS1195803 ERX1510802 GENOMIC 309175047 2016-06-10 PHESPV1639 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440424/PHESPV1639.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440424/PHESPV1639.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440424 PHESPV1639 ERR1440429 PHESPV1644 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440429 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440429 f80b8457ebb7e0c431670cc94f821aa3;7afa09971a90480590560a2da4f88519 1313 127350661 eec0bb3dd6619f178aa0c344ded62d90;6f7bdcb9bc496a38778ba144b502edf7 SAMEA4024698 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440429/ERR1440429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440429/ERR1440429_2.fastq.gz 1398294 WGS PHESPV1644 RANDOM 91211364;93536021 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2853dfe2d59e0214835a292121729efa ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440429/ERR1440429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440429/ERR1440429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440429/PHESPV1644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440429/PHESPV1644.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440429/ERR1440429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440429/ERR1440429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440429/PHESPV1644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440429/PHESPV1644.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87732104;90040424 ERS1195808 ERX1510807 GENOMIC 273177999 2016-06-10 PHESPV1644 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440429/PHESPV1644.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440429/PHESPV1644.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440429 PHESPV1644 ERR1440452 PHESPV1667 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440452 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440452 38ba46392abcf918bdfe5e9ee9bc173f;b4bb45a026e1fea42c3e7e631aceb6ce 1313 143869669 42b56aacc35dd5034e0db36111e8ef4a;90d9a394f44586aeab9368588cea61ee SAMEA4024721 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440452/ERR1440452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440452/ERR1440452_2.fastq.gz 1589083 WGS PHESPV1667 RANDOM 103934912;104255323 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2fa328672402f57f9e1d33c8a7f36dd1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440452/ERR1440452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440452/ERR1440452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440452/PHESPV1667.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440452/PHESPV1667.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440452/ERR1440452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440452/ERR1440452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440452/PHESPV1667.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440452/PHESPV1667.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99808307;100149276 ERS1195831 ERX1510830 GENOMIC 309246235 2016-06-10 PHESPV1667 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440452/PHESPV1667.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440452/PHESPV1667.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440452 PHESPV1667 ERR1440431 PHESPV1646 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440431 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440431 2d5da25bde9bf2e74914000675705f0a;6c9d3f90b9063ca8bb6a062c03115fe6 1313 165419817 6e44f7d4977d3239813d01a6af68f7b1;0d43e6b11d7a783b84479c5a1418eb40 SAMEA4024700 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440431/ERR1440431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440431/ERR1440431_2.fastq.gz 1806510 WGS PHESPV1646 RANDOM 118669905;121585947 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4156761f1ce6eaded7be599fcc133cf7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440431/ERR1440431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440431/ERR1440431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440431/PHESPV1646.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440431/PHESPV1646.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440431/ERR1440431_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440431/ERR1440431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440431/PHESPV1646.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440431/PHESPV1646.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113989946;116896288 ERS1195810 ERX1510809 GENOMIC 354971027 2016-06-10 PHESPV1646 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440431/PHESPV1646.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440431/PHESPV1646.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440431 PHESPV1646 ERR1440454 PHESPV1669 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440454 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440454 f4cc06f9327c68a37e8e0617af848f53;e8e8b5dda015f6d1a2714fd301597e20 1313 116769421 a4ee087ba63311050ec06c310b5f0c58;615f6f1749ccc8b0dc7621eb068d3585 SAMEA4024723 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440454/ERR1440454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440454/ERR1440454_2.fastq.gz 1288506 WGS PHESPV1669 RANDOM 83901686;84628462 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17abba886e3f38fd169e1383b622b070 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440454/ERR1440454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440454/ERR1440454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440454/PHESPV1669.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440454/PHESPV1669.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440454/ERR1440454_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440454/ERR1440454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440454/PHESPV1669.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440454/PHESPV1669.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80689899;81424887 ERS1195833 ERX1510832 GENOMIC 249592924 2016-06-10 PHESPV1669 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440454/PHESPV1669.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440454/PHESPV1669.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440454 PHESPV1669 ERR1440455 PHESPV1670 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440455 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440455 d25845b74044764fb29dc47671261a72;d921639890ff7276b7a511620f35b67e 1313 146158896 eed285ff3b00df5e570489848b9d02df;1ac72346927e73c7cfc226ed114f6540 SAMEA4024724 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440455/ERR1440455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440455/ERR1440455_2.fastq.gz 1623172 WGS PHESPV1670 RANDOM 105305927;106101211 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9360a63849e9dabb8e03bffeceb5f38a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440455/ERR1440455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440455/ERR1440455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440455/PHESPV1670.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440455/PHESPV1670.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440455/ERR1440455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440455/ERR1440455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440455/PHESPV1670.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440455/PHESPV1670.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101085384;101901865 ERS1195834 ERX1510833 GENOMIC 314164026 2016-06-10 PHESPV1670 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440455/PHESPV1670.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440455/PHESPV1670.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440455 PHESPV1670 ERR1440456 PHESPV1671 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440456 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440456 d4948fe4833825c57e2967f40c02434a;34779a90d0b44e78f894eaf987b0aec4 1313 133237742 5b8abdb8629ce28e3fbe72aba38bcded;227069397f69643f5cf8492e7761f056 SAMEA4024725 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440456/ERR1440456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440456/ERR1440456_2.fastq.gz 1441962 WGS PHESPV1671 RANDOM 93971784;97754397 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ef21ff44715dfed2acac0102a11498f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440456/ERR1440456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440456/ERR1440456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440456/PHESPV1671.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440456/PHESPV1671.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440456/ERR1440456_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440456/ERR1440456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440456/PHESPV1671.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440456/PHESPV1671.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90267250;94037875 ERS1195835 ERX1510834 GENOMIC 279893249 2016-06-10 PHESPV1671 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440456/PHESPV1671.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440456/PHESPV1671.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440456 PHESPV1671 ERR1440466 PHESPV1681 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440466 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440466 8bf5e09124b50892f63c7ca0c8e81cab;23168c43b8caec2a1ef722ef5fff4f47 1313 131623070 cc80dc77d08f8abf234f58d83791b40b;1ffd9cc5b20fdf71036952287444ecd9 SAMEA4024735 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440466/ERR1440466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440466/ERR1440466_2.fastq.gz 1441183 WGS PHESPV1681 RANDOM 92890880;97365541 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a5101d51f3f602670f7a76269023338 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440466/ERR1440466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440466/ERR1440466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440466/PHESPV1681.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440466/PHESPV1681.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440466/ERR1440466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440466/ERR1440466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440466/PHESPV1681.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440466/PHESPV1681.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89247947;93688246 ERS1195845 ERX1510844 GENOMIC 278170860 2016-06-10 PHESPV1681 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440466/PHESPV1681.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440466/PHESPV1681.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440466 PHESPV1681 ERR1440463 PHESPV1678 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440463 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440463 72342ccd1ce7b2d1cdf2dc298b270e70;f4828db32911163f069dec31f61ca2be 1313 226175599 4456c491b2c8425de0c1f3a42a890994;17828f4da96e0d7b0b1d0b4724277270 SAMEA4024732 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440463/ERR1440463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440463/ERR1440463_2.fastq.gz 2352592 WGS PHESPV1678 RANDOM 159335241;163985805 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 29294ae512cc28f640941b498fe3c3ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440463/ERR1440463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440463/ERR1440463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440463/PHESPV1678.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440463/PHESPV1678.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440463/ERR1440463_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440463/ERR1440463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440463/PHESPV1678.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440463/PHESPV1678.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 153423509;158075022 ERS1195842 ERX1510841 GENOMIC 450760791 2016-06-10 PHESPV1678 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440463/PHESPV1678.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440463/PHESPV1678.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440463 PHESPV1678 ERR1440483 PHESPV1698 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440483 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440483 bb446f581daeaf352c87821425555e84;6b857c2569a6583b5621607b1ae8a6bc 1313 112756564 bc28ef461a8c48a09778a4eda7a99bcc;1b884ee3d98299d6d8097dfa032d79bd SAMEA4024752 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440483/ERR1440483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440483/ERR1440483_2.fastq.gz 1233729 WGS PHESPV1698 RANDOM 79879447;82364507 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3cdefb8d107c3fb18e1cfc4ab042899e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440483/ERR1440483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440483/ERR1440483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440483/PHESPV1698.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440483/PHESPV1698.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440483/ERR1440483_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440483/ERR1440483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440483/PHESPV1698.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440483/PHESPV1698.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76797967;79274208 ERS1195862 ERX1510861 GENOMIC 237274297 2016-06-10 PHESPV1698 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440483/PHESPV1698.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440483/PHESPV1698.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440483 PHESPV1698 ERR1440512 PHESPV1727 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440512 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440512 8fe6cdaa5de72e57532e63200f8c57af;b39642bc8c83fb9037712b23deabac7e 1313 90670383 14afc3344de5379b1f40ea385f8af188;4960b44dc290ceb8f3a444d8308e0a2b SAMEA4024781 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440512/ERR1440512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440512/ERR1440512_2.fastq.gz 987424 WGS PHESPV1727 RANDOM 64483930;66060608 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 98a161451fe329c4eb02d6e5123506cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440512/ERR1440512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440512/ERR1440512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440512/PHESPV1727.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440512/PHESPV1727.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440512/ERR1440512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440512/ERR1440512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440512/PHESPV1727.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440512/PHESPV1727.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61984761;63559324 ERS1195891 ERX1510890 GENOMIC 189895457 2016-06-10 PHESPV1727 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440512/PHESPV1727.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440512/PHESPV1727.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440512 PHESPV1727 ERR1440518 PHESPV1733 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440518 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440518 5afd0da24098ebdf9a27746ed6ea7ab5;5d90e62a315291bf07737ef93bfa1e6c 1313 210541147 113c2cd8f71ca4dbabe28c4d2772d841;76278a371869f0348b8ce5400b7df8c0 SAMEA4024787 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440518/ERR1440518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440518/ERR1440518_2.fastq.gz 2484472 WGS PHESPV1733 RANDOM 153078697;156971281 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2c4c107e9feba9b6f10339cc85d1f4ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440518/ERR1440518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440518/ERR1440518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440518/PHESPV1733.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440518/PHESPV1733.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440518/ERR1440518_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440518/ERR1440518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440518/PHESPV1733.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440518/PHESPV1733.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 146838482;150717208 ERS1195897 ERX1510896 GENOMIC 490933620 2016-06-10 PHESPV1733 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440518/PHESPV1733.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440518/PHESPV1733.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440518 PHESPV1733 ERR1440544 PHESPV1759 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440544 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440544 078f18103e96dea9df778cac766665e7;6409a914b04d972a68220e7c6fe9d92d 1313 117801749 9b088f375c39b5bfb09e22082eb97e75;4aa57ac94ebe286aa7d1cfcd52e17350 SAMEA4024813 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440544/ERR1440544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440544/ERR1440544_2.fastq.gz 1376428 WGS PHESPV1759 RANDOM 86054744;87779572 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 83dd8a2a36e56fc57279956eb72b3824 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440544/ERR1440544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440544/ERR1440544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440544/PHESPV1759.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440544/PHESPV1759.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440544/ERR1440544_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440544/ERR1440544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440544/PHESPV1759.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440544/PHESPV1759.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82669674;84338720 ERS1195923 ERX1510922 GENOMIC 271825277 2016-06-10 PHESPV1759 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440544/PHESPV1759.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440544/PHESPV1759.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440544 PHESPV1759 ERR1440550 PHESPV1765 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440550 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440550 fb131f3ce1fc47762cb9126ea1750c86;0b6ea6eda50596f08a3befa15e2d767a 1313 202834147 b9c69ba1a07a0fdbd4479e1741af7d44;aae17c051bbdbdbb4f0aec248dfedede SAMEA4024819 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440550/ERR1440550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440550/ERR1440550_2.fastq.gz 2378131 WGS PHESPV1765 RANDOM 148458382;150076235 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d021025566feca4a8656ab04b80fa8d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440550/ERR1440550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440550/ERR1440550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440550/PHESPV1765.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440550/PHESPV1765.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440550/ERR1440550_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440550/ERR1440550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440550/PHESPV1765.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440550/PHESPV1765.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142569459;144138900 ERS1195929 ERX1510928 GENOMIC 469979677 2016-06-10 PHESPV1765 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440550/PHESPV1765.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440550/PHESPV1765.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440550 PHESPV1765 ERR1440554 PHESPV1769 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440554 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440554 dee7058513573b5b310562a561cef615;22008ab922d40cd9ecce3878eb1c90be 1313 183534779 638e9067645b7a832a7ee6830fef1b80;58e2180c63de2c64d580a70a611d9a80 SAMEA4024823 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440554/ERR1440554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440554/ERR1440554_2.fastq.gz 2158030 WGS PHESPV1769 RANDOM 134945967;135628936 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8ba726de08a9fa00b55a885fffa9a099 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440554/ERR1440554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440554/ERR1440554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440554/PHESPV1769.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440554/PHESPV1769.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440554/ERR1440554_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440554/ERR1440554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440554/PHESPV1769.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440554/PHESPV1769.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129553502;130169695 ERS1195933 ERX1510932 GENOMIC 425808352 2016-06-10 PHESPV1769 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440554/PHESPV1769.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440554/PHESPV1769.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440554 PHESPV1769 ERR1439595 PHESPV0806 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439595 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439595 866c4674236e108a8f74076d973ba6e2;3a82b29928db4b4ad83beb824c1772d0 1313 124823321 0b7cbe08ca85085531104ed658945870;762dc38032f3cd7ac33e868a6e2e4574 SAMEA4023864 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439595/ERR1439595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439595/ERR1439595_2.fastq.gz 1390171 WGS PHESPV0806 RANDOM 81102252;82783371 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 11599c60a0f3683eb0a3ecaf030516c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439595/ERR1439595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439595/ERR1439595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439595/PHESPV0806.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439595/PHESPV0806.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439595/ERR1439595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439595/ERR1439595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439595/PHESPV0806.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439595/PHESPV0806.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85673458;87321000 ERS1194974 ERX1509973 GENOMIC 274224890 2016-06-10 PHESPV0806 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439595/PHESPV0806.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439595/PHESPV0806.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439595 PHESPV0806 ERR1440726 PHESPV1941 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440726 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440726 eedbb9bdd406d2b91968d940c439c7d6;05fc10cda3e979c7ffbc41d232828ad2 1313 111172386 8b3d4536e30b2b5bd13124a57712b033;884ee65103c9c5f2cec070a50e8f7fcc SAMEA4024995 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440726/ERR1440726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440726/ERR1440726_2.fastq.gz 1246040 WGS PHESPV1941 RANDOM 80333494;81590300 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 13c4b16e887c434a91b113e92b90cd23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440726/ERR1440726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440726/ERR1440726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440726/PHESPV1941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440726/PHESPV1941.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440726/ERR1440726_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440726/ERR1440726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440726/PHESPV1941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440726/PHESPV1941.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77238371;78492754 ERS1196105 ERX1511104 GENOMIC 244449906 2016-06-10 PHESPV1941 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440726/PHESPV1941.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440726/PHESPV1941.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440726 PHESPV1941 ERR1439582 PHESPV0793 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439582 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439582 c026e9298953f728efe780b5dcaa4e7b;5ea312070ae51ed6a1b155a6d78eb811 1313 230796761 5c7b7e66075129f15b83b3f2096502e4;85663a65bd31be7f02bdca9263fc74d3 SAMEA4023851 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439582/ERR1439582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439582/ERR1439582_2.fastq.gz 1827451 WGS PHESPV0793 RANDOM 142840598;145056763 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bb0d0fb240b21f06bc01cc86f1b9e907 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439582/ERR1439582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439582/ERR1439582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439582/PHESPV0793.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439582/PHESPV0793.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439582/ERR1439582_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439582/ERR1439582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439582/PHESPV0793.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439582/PHESPV0793.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 148656989;150843797 ERS1194961 ERX1509960 GENOMIC 353367725 2016-06-10 PHESPV0793 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439582/PHESPV0793.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439582/PHESPV0793.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439582 PHESPV0793 ERR1440558 PHESPV1773 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440558 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440558 7739c9cb287f2ec73175dd093df63763;27486b20ecc691823e8d6f4a60ce3f81 1313 131217252 6ee7ca2751b922725d2363807c4a0557;c8ef045855a156bdfb366a19a063db49 SAMEA4024827 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440558/ERR1440558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440558/ERR1440558_2.fastq.gz 1520174 WGS PHESPV1773 RANDOM 95785988;97592855 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6e68fc4dbe3c9a8695e682edc423ef8b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440558/ERR1440558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440558/ERR1440558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440558/PHESPV1773.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440558/PHESPV1773.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440558/ERR1440558_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440558/ERR1440558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440558/PHESPV1773.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440558/PHESPV1773.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91941731;93685213 ERS1195937 ERX1510936 GENOMIC 300700878 2016-06-10 PHESPV1773 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440558/PHESPV1773.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440558/PHESPV1773.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440558 PHESPV1773 ERR1439848 PHESPV1059 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439848 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439848 1e2765add569a594b2c1958442bb5d13;3b03f205f4a22e9952a564cc9d0533c4 1313 197508321 01555fb7864994b402ef04c8c575af1f;5db4b5ae6e57aa4e5b8516d26fa87e3b SAMEA4024117 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439848/ERR1439848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439848/ERR1439848_2.fastq.gz 2187703 WGS PHESPV1059 RANDOM 129761882;135128492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 772ff5fe2a2328b96b03b3250d5ebb7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439848/ERR1439848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439848/ERR1439848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439848/PHESPV1059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439848/PHESPV1059.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439848/ERR1439848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439848/ERR1439848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439848/PHESPV1059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439848/PHESPV1059.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136570555;141863973 ERS1195227 ERX1510226 GENOMIC 432152830 2016-06-10 PHESPV1059 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439848/PHESPV1059.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439848/PHESPV1059.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439848 PHESPV1059 ERR1439880 PHESPV1091 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439880 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439880 1d9a451776921d672cd2b354c3acdce7;6aa6f2e8713309011ace004f55a58243 1313 157172086 00426f23b1a592e4b8e66c1bc595abf9;4d7e151e2a175921c020665fc8fe8c52 SAMEA4024149 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439880/ERR1439880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439880/ERR1439880_2.fastq.gz 1721093 WGS PHESPV1091 RANDOM 105497240;106893301 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3849043b4210405140da7d55b2930af2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439880/ERR1439880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439880/ERR1439880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439880/PHESPV1091.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439880/PHESPV1091.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439880/ERR1439880_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439880/ERR1439880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439880/PHESPV1091.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439880/PHESPV1091.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111165330;112555631 ERS1195259 ERX1510258 GENOMIC 340678704 2016-06-10 PHESPV1091 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439880/PHESPV1091.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439880/PHESPV1091.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439880 PHESPV1091 ERR1439444 PHESPV0655 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439444 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439444 41678ab6eb740e7ce68107f606dd1c12;abe6fe053169e16c69f687de60fc17b1 1313 93533135 56cf037afd58a937b0a6a753f53b1aa3;5fdc6a52428467479a6458fab7725a31 SAMEA4023713 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439444/ERR1439444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439444/ERR1439444_2.fastq.gz 1028836 WGS PHESPV0655 RANDOM 67395697;68179930 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8cfc0b01504e2f064cf6e4cdcccbca28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439444/ERR1439444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439444/ERR1439444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439444/PHESPV0655.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439444/PHESPV0655.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439444/ERR1439444_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439444/ERR1439444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439444/PHESPV0655.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439444/PHESPV0655.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64777622;65576860 ERS1194823 ERX1509822 GENOMIC 201392988 2016-06-10 PHESPV0655 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439444/PHESPV0655.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439444/PHESPV0655.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439444 PHESPV0655 ERR1440219 PHESPV1433 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440219 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440219 7f9e362f7432f4dd3da9e5669a4cde83;5c8b45242de4c85da7db6936a7420384 1313 143914414 9169eb050f63ec76b02c944239f923c8;d01116a21b81b33f63a976a9120dd1f4 SAMEA4024488 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440219/ERR1440219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440219/ERR1440219_2.fastq.gz 1716139 WGS PHESPV1433 RANDOM 95792920;101160816 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9b71eb4020a490bcba9265439b3cde76 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440219/ERR1440219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440219/ERR1440219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440219/PHESPV1433.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440219/PHESPV1433.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440219/ERR1440219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440219/ERR1440219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440219/PHESPV1433.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440219/PHESPV1433.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101391020;106673169 ERS1195598 ERX1510597 GENOMIC 340571824 2016-06-10 PHESPV1433 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440219/PHESPV1433.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440219/PHESPV1433.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440219 PHESPV1433 ERR1440231 PHESPV1445 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440231 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440231 6ea54bde4d1314b2e98f496251210402;9505780c166f47168efc09f283efe2ba 1313 133990583 0eecce701ab2e368132c42b9161b06d1;29be5e5d2433b314a1f9c2092f1e5a67 SAMEA4024500 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440231/ERR1440231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440231/ERR1440231_2.fastq.gz 1585353 WGS PHESPV1445 RANDOM 88142574;94537947 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 36ec360ac554e98afcdf4c901ccb31e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440231/ERR1440231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440231/ERR1440231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440231/PHESPV1445.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440231/PHESPV1445.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440231/ERR1440231_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440231/ERR1440231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440231/PHESPV1445.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440231/PHESPV1445.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93365502;99656019 ERS1195610 ERX1510609 GENOMIC 314421661 2016-06-10 PHESPV1445 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440231/PHESPV1445.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440231/PHESPV1445.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440231 PHESPV1445 ERR1439556 PHESPV0767 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439556 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439556 2171584148ef4faedf149633816f8896;9a249237eb67d4096452b7a47aa24319 1313 144857424 9ad22e437b2dce40c55955932ba4203f;52d87f84e65d830b917966ad2a7316b1 SAMEA4023825 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439556/ERR1439556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439556/ERR1439556_2.fastq.gz 1611396 WGS PHESPV0767 RANDOM 93407775;95210040 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2763ad653be7b8618b0b09ecdf2cb2da ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439556/ERR1439556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439556/ERR1439556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439556/PHESPV0767.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439556/PHESPV0767.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439556/ERR1439556_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439556/ERR1439556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439556/PHESPV0767.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439556/PHESPV0767.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98531852;100289930 ERS1194935 ERX1509934 GENOMIC 317266872 2016-06-10 PHESPV0767 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439556/PHESPV0767.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439556/PHESPV0767.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439556 PHESPV0767 ERR1439601 PHESPV0812 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439601 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439601 186b53c8f735228b8b817156e244294c;5335dee70423f4763502ccf38bf7adfa 1313 275766173 f5e455fc4a74ae60c7d5f87d6c7d3f91;f67ba9473fcf6eba5a54923cb61dc023 SAMEA4023870 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439601/ERR1439601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439601/ERR1439601_2.fastq.gz 3056657 WGS PHESPV0812 RANDOM 180225944;188448035 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0db09219f79751cc0d13a48a58755acf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439601/ERR1439601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439601/ERR1439601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439601/PHESPV0812.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439601/PHESPV0812.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439601/ERR1439601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439601/ERR1439601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439601/PHESPV0812.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439601/PHESPV0812.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 189367198;197488473 ERS1194980 ERX1509979 GENOMIC 603565474 2016-06-10 PHESPV0812 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439601/PHESPV0812.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439601/PHESPV0812.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439601 PHESPV0812 ERR1439825 PHESPV1036 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439825 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439825 29da23ac163765db3e0ad0a9a3fc63fd;ef336b991c198f48bed1215dc8d56c0e 1313 194692827 c38d328646ffad20dcf69d06554ea290;6e6e131283ae692b85ec4f7fdd1e15e6 SAMEA4024094 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439825/ERR1439825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439825/ERR1439825_2.fastq.gz 2165776 WGS PHESPV1036 RANDOM 128888979;133312279 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee5dff9033870b686dd1d7392ec0bd54 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439825/ERR1439825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439825/ERR1439825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439825/PHESPV1036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439825/PHESPV1036.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439825/ERR1439825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439825/ERR1439825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439825/PHESPV1036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439825/PHESPV1036.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135706171;140067516 ERS1195204 ERX1510203 GENOMIC 428493581 2016-06-10 PHESPV1036 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439825/PHESPV1036.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439825/PHESPV1036.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439825 PHESPV1036 ERR1439635 PHESPV0846 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439635 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439635 c21175d4683b66485d967fcdd8ff31b2;5fee8fd90094cd938b639d8b8b7c5360 1313 251259243 e26693f36facf75dca283f68128b209e;54585a103024f85a5162b6be58c96abb SAMEA4023904 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439635/ERR1439635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439635/ERR1439635_2.fastq.gz 2800118 WGS PHESPV0846 RANDOM 165622511;171110776 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline adc7555c29bde32cc75506190cceb56c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439635/ERR1439635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439635/ERR1439635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439635/PHESPV0846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439635/PHESPV0846.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439635/ERR1439635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439635/ERR1439635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439635/PHESPV0846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439635/PHESPV0846.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 174057507;179497929 ERS1195014 ERX1510013 GENOMIC 554111610 2016-06-10 PHESPV0846 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439635/PHESPV0846.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439635/PHESPV0846.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439635 PHESPV0846 ERR1439845 PHESPV1056 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439845 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439845 405c45de2bf9565535483c05bd3d2b58;6d5b34f7421817a1a80fc7789d92effc 1313 132689769 f8853be0e1a3d1d086969675ec6a8299;28b6b8f014786ba44869befcecfe0cfa SAMEA4024114 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439845/ERR1439845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439845/ERR1439845_2.fastq.gz 1449952 WGS PHESPV1056 RANDOM 88661379;89933302 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 95428361c1f663a618fca1c5a639c160 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439845/ERR1439845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439845/ERR1439845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439845/PHESPV1056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439845/PHESPV1056.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439845/ERR1439845_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439845/ERR1439845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439845/PHESPV1056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439845/PHESPV1056.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93485053;94737030 ERS1195224 ERX1510223 GENOMIC 286779362 2016-06-10 PHESPV1056 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439845/PHESPV1056.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439845/PHESPV1056.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439845 PHESPV1056 ERR1439801 PHESPV1012 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439801 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439801 e9c122194f716cb40156a66910519944;aca482c8a415d60c3c72d5f5159fe4de 1313 131781630 57e56faf8c0242c6679ceb739d98c039;b8c5b32e40c569d499611b4184954277 SAMEA4024070 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439801/ERR1439801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439801/ERR1439801_2.fastq.gz 1440004 WGS PHESPV1012 RANDOM 88241034;89262661 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5bf0b5a41bf12f63995ba88732a35494 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439801/ERR1439801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439801/ERR1439801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439801/PHESPV1012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439801/PHESPV1012.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439801/ERR1439801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439801/ERR1439801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439801/PHESPV1012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439801/PHESPV1012.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93030346;94040717 ERS1195180 ERX1510179 GENOMIC 284993645 2016-06-10 PHESPV1012 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439801/PHESPV1012.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439801/PHESPV1012.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439801 PHESPV1012 ERR1439890 PHESPV1101 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439890 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439890 6abdee6aeffb3d3a29ee7120256fc9d4;d27ae7d46d153dfc47daf5e8d98e471b 1313 145813819 19520c0feb5ab38eecdcab16726a1be6;0e3a61279967266e3b7f47148e8b2066 SAMEA4024159 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439890/ERR1439890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439890/ERR1439890_2.fastq.gz 1595108 WGS PHESPV1101 RANDOM 97894702;99138094 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 70a39bc19ae364dc0ea7045974588924 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439890/ERR1439890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439890/ERR1439890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439890/PHESPV1101.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439890/PHESPV1101.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439890/ERR1439890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439890/ERR1439890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439890/PHESPV1101.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439890/PHESPV1101.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103167130;104400165 ERS1195269 ERX1510268 GENOMIC 315744102 2016-06-10 PHESPV1101 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439890/PHESPV1101.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439890/PHESPV1101.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439890 PHESPV1101 ERR1440274 PHESPV1489 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440274 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440274 5507ffe7d8bd9b2163400b044eeda10c;db84628eccdb2fa98295bc4894b69586 1313 130199665 4f87740b0781ac299d7b651664ea8c76;e59fa4de7c553eb379290440feb433a2 SAMEA4024543 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440274/ERR1440274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440274/ERR1440274_2.fastq.gz 1423406 WGS PHESPV1489 RANDOM 87351420;88424784 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 06330be637f5501593c11ea9efd2a5fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440274/ERR1440274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440274/ERR1440274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440274/PHESPV1489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440274/PHESPV1489.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440274/ERR1440274_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440274/ERR1440274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440274/PHESPV1489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440274/PHESPV1489.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92095994;93155470 ERS1195653 ERX1510652 GENOMIC 281705654 2016-06-10 PHESPV1489 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440274/PHESPV1489.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440274/PHESPV1489.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440274 PHESPV1489 ERR1440369 PHESPV1584 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440369 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440369 34128486a222426293dec2ebdbcb3c79;2dcd8e82621fb1fbc5c054e506a0eb94 1313 182535347 71240d7edd2fa4d0932aab29d9d4e077;c55c6ef790920342cece1cf7af2718b9 SAMEA4024638 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440369/ERR1440369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440369/ERR1440369_2.fastq.gz 2133622 WGS PHESPV1584 RANDOM 132021778;136410299 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5641de674ca396ec552a55dc9256db4f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440369/ERR1440369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440369/ERR1440369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440369/PHESPV1584.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440369/PHESPV1584.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440369/ERR1440369_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440369/ERR1440369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440369/PHESPV1584.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440369/PHESPV1584.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126609761;130959040 ERS1195748 ERX1510747 GENOMIC 420360061 2016-06-10 PHESPV1584 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440369/PHESPV1584.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440369/PHESPV1584.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440369 PHESPV1584 ERR1440740 PHESPV1955 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440740 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440740 ce2d2be00a7b2ad30ab0d445bed4f322;c88df9df16dc81729f565f999f2e054a 1313 161089695 67cb47fcacd0eccc181f52c32c0ee3b0;08c1d748fc41fb3d5feb31005747bf48 SAMEA4025009 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440740/ERR1440740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440740/ERR1440740_2.fastq.gz 1808550 WGS PHESPV1955 RANDOM 116535531;118244128 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e9b44e5e20afd7d4faf0e2ee14102e2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440740/ERR1440740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440740/ERR1440740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440740/PHESPV1955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440740/PHESPV1955.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440740/ERR1440740_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440740/ERR1440740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440740/PHESPV1955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440740/PHESPV1955.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111824977;113528640 ERS1196119 ERX1511118 GENOMIC 353481244 2016-06-10 PHESPV1955 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440740/PHESPV1955.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440740/PHESPV1955.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440740 PHESPV1955 ERR1440422 PHESPV1637 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440422 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440422 cdc6aec86e1cee669dc347e86378df94;6670f0b136c9b42637681d8d9242aeb3 1313 174211708 31ce30e8cf6fba6ed6561ec6711f391e;624e330fd2a3e0061fb03888f9ade54b SAMEA4024691 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440422/ERR1440422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440422/ERR1440422_2.fastq.gz 1925733 WGS PHESPV1637 RANDOM 125197076;127936072 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6cfd9c0a58eb14ab7b15cd0580455eff ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440422/ERR1440422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440422/ERR1440422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440422/PHESPV1637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440422/PHESPV1637.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440422/ERR1440422_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440422/ERR1440422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440422/PHESPV1637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440422/PHESPV1637.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120220666;122954985 ERS1195801 ERX1510800 GENOMIC 376656088 2016-06-10 PHESPV1637 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440422/PHESPV1637.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440422/PHESPV1637.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440422 PHESPV1637 ERR1440791 PHESPV2006 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440791 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440791 51008c7b60a75e5533f979481ecc9392;6a7a00b3f54f3956c8d76438d3e4530c 1313 117049121 730dfd5e071084017cb56c30f9f566d7;e5a909822adadcdcc6a3b272fdb8f05d SAMEA4025060 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440791/ERR1440791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440791/ERR1440791_2.fastq.gz 1281635 WGS PHESPV2006 RANDOM 84372675;85077514 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fb182061022f95db5e60e6014f977b5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440791/ERR1440791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440791/ERR1440791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440791/PHESPV2006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440791/PHESPV2006.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440791/ERR1440791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440791/ERR1440791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440791/PHESPV2006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440791/PHESPV2006.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81175346;81885177 ERS1196170 ERX1511169 GENOMIC 249409989 2016-06-10 PHESPV2006 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440791/PHESPV2006.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440791/PHESPV2006.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440791 PHESPV2006 ERR1440794 PHESPV2009 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440794 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440794 2f0529916c255fd0d8bde9f3dcf0d4c5;46ac14d55a320db5bb8a54eac520f154 1313 145471421 d12ed6c83bf586f8d474e2f4a2304425;37cc7d4d33db228ccad9104e8c4ba29f SAMEA4025063 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440794/ERR1440794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440794/ERR1440794_2.fastq.gz 1591692 WGS PHESPV2009 RANDOM 104850773;105655722 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cd1e5c5582bfb9015d016151fbb9ec21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440794/ERR1440794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440794/ERR1440794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440794/PHESPV2009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440794/PHESPV2009.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440794/ERR1440794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440794/ERR1440794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440794/PHESPV2009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440794/PHESPV2009.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100710870;101519176 ERS1196173 ERX1511172 GENOMIC 308711011 2016-06-10 PHESPV2009 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440794/PHESPV2009.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440794/PHESPV2009.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440794 PHESPV2009 ERR1440812 PHESPV2027 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440812 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440812 42537d56a6bfc5a02927ff8b125f6401;a25abecc7f670d86511da5c3b57f2223 1313 165054994 f0d34a5cb83eeefdbca5d0e855b8d019;2185da8b87e23be6ca61bd5abbc48012 SAMEA4025081 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440812/ERR1440812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440812/ERR1440812_2.fastq.gz 1780168 WGS PHESPV2027 RANDOM 117859494;120564365 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ce33a370d6220338801ab1664d99bc0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440812/ERR1440812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440812/ERR1440812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440812/PHESPV2027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440812/PHESPV2027.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440812/ERR1440812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440812/ERR1440812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440812/PHESPV2027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440812/PHESPV2027.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113140058;115836478 ERS1196191 ERX1511190 GENOMIC 347728773 2016-06-10 PHESPV2027 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440812/PHESPV2027.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440812/PHESPV2027.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440812 PHESPV2027 ERR1440826 PHESPV2041 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440826 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440826 886803a78808a134eaadf76bc695b523;ddc06a5c1dc11baefff627698c74733c 1313 182019214 e3bffd1de21758f06801bde052db8ca8;4643d7d94bb466de6cc89a5fba684521 SAMEA4025095 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440826/ERR1440826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440826/ERR1440826_2.fastq.gz 1995383 WGS PHESPV2041 RANDOM 130645646;132611141 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5e5d7058d839a1fd56c8a596165c1bd5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440826/ERR1440826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440826/ERR1440826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440826/PHESPV2041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440826/PHESPV2041.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440826/ERR1440826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440826/ERR1440826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440826/PHESPV2041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440826/PHESPV2041.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125464318;127436809 ERS1196205 ERX1511204 GENOMIC 387634902 2016-06-10 PHESPV2041 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440826/PHESPV2041.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440826/PHESPV2041.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440826 PHESPV2041 ERR1440815 PHESPV2030 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440815 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440815 f4f95aba1cb38f2d7d29842e9f2daf1d;cf77129cf3acd49405ceb679103cb0ba 1313 135580938 c226e12c27dffba987aff18495002108;0e08ab2e3bff8f48a2fbe51a4f88d8dd SAMEA4025084 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440815/ERR1440815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440815/ERR1440815_2.fastq.gz 1492047 WGS PHESPV2030 RANDOM 97798424;98739085 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 81bf8a244c8ffc9e3c4065b452a926fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440815/ERR1440815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440815/ERR1440815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440815/PHESPV2030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440815/PHESPV2030.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440815/ERR1440815_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440815/ERR1440815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440815/PHESPV2030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440815/PHESPV2030.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93928315;94873390 ERS1196194 ERX1511193 GENOMIC 290038688 2016-06-10 PHESPV2030 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440815/PHESPV2030.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440815/PHESPV2030.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440815 PHESPV2030 ERR1440830 PHESPV2045 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440830 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440830 168720c0f39add102c28a70871edb789;2fef8cea7edfcd97fc775f4944c4f24f 1313 133841541 6a8897236d11549b0c5f17fcad25ae48;5ae63d3148879f8ccb2e237a0953a553 SAMEA4025099 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440830/ERR1440830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440830/ERR1440830_2.fastq.gz 1457955 WGS PHESPV2045 RANDOM 96352500;97366205 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e32e4acb5d70ce32f0795e1894470190 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440830/ERR1440830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440830/ERR1440830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440830/PHESPV2045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440830/PHESPV2045.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440830/ERR1440830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440830/ERR1440830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440830/PHESPV2045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440830/PHESPV2045.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92611426;93631548 ERS1196209 ERX1511208 GENOMIC 284103141 2016-06-10 PHESPV2045 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440830/PHESPV2045.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440830/PHESPV2045.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440830 PHESPV2045 ERR1440831 PHESPV2046 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440831 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440831 84cd33a27812a080077ae5d94b961fc2;f5adcba45dd1c1062716da0456318667 1313 155046567 e4f13b7b0c0d963616dfb58eef64f46c;d479fdd571421147916d856760d5a50d SAMEA4025100 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440831/ERR1440831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440831/ERR1440831_2.fastq.gz 1694189 WGS PHESPV2046 RANDOM 111890544;112684299 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 492145253dd0f9bc673a9573a28d0cea ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440831/ERR1440831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440831/ERR1440831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440831/PHESPV2046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440831/PHESPV2046.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440831/ERR1440831_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440831/ERR1440831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440831/PHESPV2046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440831/PHESPV2046.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107458563;108264860 ERS1196210 ERX1511209 GENOMIC 329924229 2016-06-10 PHESPV2046 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440831/PHESPV2046.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440831/PHESPV2046.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440831 PHESPV2046 ERR1440835 PHESPV2050 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440835 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440835 a232c75390036735f2313e6373df6f48;a75a990bb99246335bccd7b94004cd15 1313 175037867 6e3683c61686e46c918d98328fcfbaab;46c83a2a3fc81b8af267bc26fc42d3e4 SAMEA4025104 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440835/ERR1440835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440835/ERR1440835_2.fastq.gz 1911018 WGS PHESPV2050 RANDOM 125572220;127602261 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 80ad726f0ab472369a80cdf7613fba02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440835/ERR1440835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440835/ERR1440835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440835/PHESPV2050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440835/PHESPV2050.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440835/ERR1440835_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440835/ERR1440835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440835/PHESPV2050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440835/PHESPV2050.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120592415;122626558 ERS1196214 ERX1511213 GENOMIC 371773431 2016-06-10 PHESPV2050 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440835/PHESPV2050.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440835/PHESPV2050.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440835 PHESPV2050 ERR1440842 PHESPV2057 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440842 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440842 b9886d42a8608b07d92e64de4e846f5f;a6b1be1a39c23e1faf34d73272e00653 1313 167202570 28f63251356f9e4908649066c22893d6;11bb663101f36cbaf24e41f602eb9bb4 SAMEA4025111 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440842/ERR1440842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440842/ERR1440842_2.fastq.gz 1841091 WGS PHESPV2057 RANDOM 120788795;121780955 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd35711ef03ca4c4617e37d166c1634b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440842/ERR1440842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440842/ERR1440842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440842/PHESPV2057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440842/PHESPV2057.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440842/ERR1440842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440842/ERR1440842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440842/PHESPV2057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440842/PHESPV2057.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115969376;116974760 ERS1196221 ERX1511220 GENOMIC 358847429 2016-06-10 PHESPV2057 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440842/PHESPV2057.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440842/PHESPV2057.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440842 PHESPV2057 ERR1440845 PHESPV2060 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440845 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440845 99c46fc8119efc4dd9f8660a3521d4f8;89643bfeab17edbd7dc1ed980dd8fa3c 1313 135336159 e7a2145efcadc7bfa1ea4880745b3541;2f9a862871126d5916dc4f6922be9fc7 SAMEA4025114 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440845/ERR1440845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440845/ERR1440845_2.fastq.gz 1483616 WGS PHESPV2060 RANDOM 97885107;98276364 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0da33f784c803f1ca93e0fc2913c08e2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440845/ERR1440845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440845/ERR1440845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440845/PHESPV2060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440845/PHESPV2060.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440845/ERR1440845_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440845/ERR1440845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440845/PHESPV2060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440845/PHESPV2060.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94092204;94494573 ERS1196224 ERX1511223 GENOMIC 289451168 2016-06-10 PHESPV2060 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440845/PHESPV2060.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440845/PHESPV2060.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440845 PHESPV2060 ERR1438849 PHESPV0059 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438849 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438849 35c2bb32355bcc1511ea13efd43c4561;6b7db9e10d4f03db62979320d103d29e 1313 94320984 a2f4decc3f5892ce788bea5c313e3309;9787f73f22e289cb45180e81dac2024f SAMEA4023118 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438849/ERR1438849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438849/ERR1438849_2.fastq.gz 1078207 WGS PHESPV0059 RANDOM 61198576;66623418 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7996671f11a0bf82a6c79c230845cc42 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438849/ERR1438849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438849/ERR1438849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438849/PHESPV0059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438849/PHESPV0059.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438849/ERR1438849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438849/ERR1438849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438849/PHESPV0059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438849/PHESPV0059.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64921616;70286240 ERS1194228 ERX1509227 GENOMIC 213959022 2016-06-10 PHESPV0059 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438849/PHESPV0059.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438849/PHESPV0059.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438849 PHESPV0059 ERR1438910 PHESPV0120 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438910 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438910 007db74e07dcfa9d0696bc303850676f;d4026a5e9ec25063fa167a4095981ca8 1313 156226792 a3250f6dbe6679cbaf6547afbda78ccc;3b719fe8a0ba95f1f3278e49c40a8e92 SAMEA4023179 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438910/ERR1438910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438910/ERR1438910_2.fastq.gz 1735887 WGS PHESPV0120 RANDOM 104709499;106838040 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 59c18f8b1a8c7a6a7bee95b7df8fda90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438910/ERR1438910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438910/ERR1438910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438910/PHESPV0120.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438910/PHESPV0120.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438910/ERR1438910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438910/ERR1438910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438910/PHESPV0120.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438910/PHESPV0120.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110419308;112557610 ERS1194289 ERX1509288 GENOMIC 344532757 2016-06-10 PHESPV0120 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438910/PHESPV0120.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438910/PHESPV0120.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438910 PHESPV0120 ERR1438912 PHESPV0122 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438912 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438912 6145ef1c13153107fb5bbb378c0b225c;e47f5fdaac400ed4a0ab77c1c97deadb 1313 191415856 26c9e973609fb981537653b5da9ce145;4f4ce5f934cb2337e431748e91a9d398 SAMEA4023181 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438912/ERR1438912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438912/ERR1438912_2.fastq.gz 2115035 WGS PHESPV0122 RANDOM 126853515;131290069 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d89667dac2eca4b29ad28213d25636c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438912/ERR1438912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438912/ERR1438912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438912/PHESPV0122.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438912/PHESPV0122.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438912/ERR1438912_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438912/ERR1438912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438912/PHESPV0122.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438912/PHESPV0122.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133532111;137952659 ERS1194291 ERX1509290 GENOMIC 419112654 2016-06-10 PHESPV0122 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438912/PHESPV0122.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438912/PHESPV0122.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438912 PHESPV0122 ERR1438920 PHESPV0130 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438920 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438920 5dbb74df19a347432a1f69b1d6da5745;badd80d24fcc26bea74de6d4b984cec5 1313 186753333 8116a0ef6d51c5d186534b400db41d18;eedb81acb00179efaa10afb7a05e7431 SAMEA4023189 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438920/ERR1438920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438920/ERR1438920_2.fastq.gz 2085070 WGS PHESPV0130 RANDOM 124987333;127934450 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c64792feca45212df760fac35617deb2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438920/ERR1438920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438920/ERR1438920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438920/PHESPV0130.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438920/PHESPV0130.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438920/ERR1438920_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438920/ERR1438920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438920/PHESPV0130.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438920/PHESPV0130.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131634674;134583571 ERS1194299 ERX1509298 GENOMIC 413850938 2016-06-10 PHESPV0130 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438920/PHESPV0130.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438920/PHESPV0130.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438920 PHESPV0130 ERR1438936 PHESPV0146 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438936 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438936 337af7a6abec5776b27f4b84098bd54d;56b1c961913e19aab2496847bf853a03 1313 161191009 4b2bc7732850ed87e01dcf2d495ec8a0;3f01eb9b3994658938a2c13f87e12084 SAMEA4023205 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438936/ERR1438936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438936/ERR1438936_2.fastq.gz 1796335 WGS PHESPV0146 RANDOM 107532699;110088603 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9f3098e35f75fdaac5dde5b5dcf4d18a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438936/ERR1438936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438936/ERR1438936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438936/PHESPV0146.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438936/PHESPV0146.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438936/ERR1438936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438936/ERR1438936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438936/PHESPV0146.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438936/PHESPV0146.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113371037;115941159 ERS1194315 ERX1509314 GENOMIC 356405411 2016-06-10 PHESPV0146 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438936/PHESPV0146.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438936/PHESPV0146.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438936 PHESPV0146 ERR1438979 PHESPV0189 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438979 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438979 82548ff87017f381010f581a5a9edb17;7bc0b36f32952d5e7772a8042db1fca0 1313 147271018 7afa162ad9ee84402489ae5a44a94547;73e8b6ff9722cbb2f95988c4c12f7197 SAMEA4023248 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438979/ERR1438979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438979/ERR1438979_2.fastq.gz 1697604 WGS PHESPV0189 RANDOM 98686131;101582118 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4c6fd7d384a49349e2b53e961adb14b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438979/ERR1438979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438979/ERR1438979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438979/PHESPV0189.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438979/PHESPV0189.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438979/ERR1438979_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438979/ERR1438979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438979/PHESPV0189.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438979/PHESPV0189.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104225636;107107688 ERS1194358 ERX1509357 GENOMIC 336778126 2016-06-10 PHESPV0189 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438979/PHESPV0189.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438979/PHESPV0189.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438979 PHESPV0189 ERR1439040 PHESPV0251 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439040 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439040 0c6960622f1a857d4425ad6b25cf276b;53c614677911187ad2cc029bc6b05353 1313 224712788 15d95335afd034a1d845512bf5a9c361;492e962a773e72d03f0e3b02991252db SAMEA4023309 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439040/ERR1439040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439040/ERR1439040_2.fastq.gz 1881949 WGS PHESPV0251 RANDOM 138764565;140837577 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eeda39b1021d67140d5e7f68fe93b2c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439040/ERR1439040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439040/ERR1439040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439040/PHESPV0251.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439040/PHESPV0251.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439040/ERR1439040_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439040/ERR1439040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439040/PHESPV0251.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439040/PHESPV0251.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 144612983;146732695 ERS1194419 ERX1509418 GENOMIC 368754843 2016-06-10 PHESPV0251 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439040/PHESPV0251.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439040/PHESPV0251.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439040 PHESPV0251 ERR1439184 PHESPV0395 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439184 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439184 b56a8eb34370cd5d9dc4ce02ccba5ad0;0b3173385b788693da3aa456add19143 1313 127092603 048ec98ee8e291100a8341f9582c2d7b;a2e2229d674430a0bccdceb31080e333 SAMEA4023453 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439184/ERR1439184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439184/ERR1439184_2.fastq.gz 1067105 WGS PHESPV0395 RANDOM 76823539;81039473 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 003e6bb4431bc616851fd05cf1110617 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439184/ERR1439184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439184/ERR1439184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439184/PHESPV0395.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439184/PHESPV0395.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439184/ERR1439184_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439184/ERR1439184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439184/PHESPV0395.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439184/PHESPV0395.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80428782;84648331 ERS1194563 ERX1509562 GENOMIC 208712991 2016-06-10 PHESPV0395 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439184/PHESPV0395.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439184/PHESPV0395.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439184 PHESPV0395 ERR1439321 PHESPV0532 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439321 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439321 4e595bb29ae8f6f201ab823ff0cfe15d;d1c8ed22f791d01dc5cc500062a9b6dc 1313 229639521 9790c640fbbb85b0eb6b64ae5566c093;53fd7785855dc1000d949a0282ea70b0 SAMEA4023590 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439321/ERR1439321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439321/ERR1439321_2.fastq.gz 2837792 WGS PHESPV0532 RANDOM 155293731;158932598 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 38d0546b1f9017103912db773453f26d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439321/ERR1439321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439321/ERR1439321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439321/PHESPV0532.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439321/PHESPV0532.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439321/ERR1439321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439321/ERR1439321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439321/PHESPV0532.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439321/PHESPV0532.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 163971556;167588417 ERS1194700 ERX1509699 GENOMIC 555264221 2016-06-10 PHESPV0532 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439321/PHESPV0532.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439321/PHESPV0532.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439321 PHESPV0532 ERR1439347 PHESPV0558 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439347 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439347 8f3f0d7a2023f86695cd9c43b170c83e;9243bb7eec2f89336fb641dab3ee2e46 1313 203818861 550d1506d4f78f6e1f86c64d42ad3f96;432821b7f98fdee00c3c88da2f261ab7 SAMEA4023616 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439347/ERR1439347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439347/ERR1439347_2.fastq.gz 2268375 WGS PHESPV0558 RANDOM 133744378;138333782 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7e27dfb4f3e328136916ef70e6425152 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439347/ERR1439347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439347/ERR1439347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439347/PHESPV0558.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439347/PHESPV0558.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439347/ERR1439347_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439347/ERR1439347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439347/PHESPV0558.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439347/PHESPV0558.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 140841832;145369472 ERS1194726 ERX1509725 GENOMIC 448353033 2016-06-10 PHESPV0558 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439347/PHESPV0558.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439347/PHESPV0558.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439347 PHESPV0558 ERR1439397 PHESPV0608 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439397 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439397 ee5ff4e3d9870131a8bbe47228111102;ca7adc6c24be84621e464ca68c95d3ee 1313 131738360 2f08258e90c1a61434d617ab0683b494;77e66d795501ee16df7c9bda54fafc3d SAMEA4023666 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439397/ERR1439397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439397/ERR1439397_2.fastq.gz 1619086 WGS PHESPV0608 RANDOM 87645707;92968386 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 61977c061e0d53f58f7d0a623b5ea051 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439397/ERR1439397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439397/ERR1439397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439397/PHESPV0608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439397/PHESPV0608.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439397/ERR1439397_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439397/ERR1439397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439397/PHESPV0608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439397/PHESPV0608.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93039196;98317525 ERS1194776 ERX1509775 GENOMIC 315878945 2016-06-10 PHESPV0608 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439397/PHESPV0608.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439397/PHESPV0608.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439397 PHESPV0608 ERR1439410 PHESPV0621 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439410 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439410 cb00fe3ae9fbfdb294dcd65ee2a07cca;f9de217b4a7931faa1ea0f4a7ca72ae5 1313 207164147 494cda96426f75c909811c9c71a86e69;2865b4d1354c2a3ca20377d9ad74ceab SAMEA4023679 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439410/ERR1439410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439410/ERR1439410_2.fastq.gz 2587864 WGS PHESPV0621 RANDOM 139800906;145590874 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 298af65a66244b313be333e6857eb1c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439410/ERR1439410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439410/ERR1439410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439410/PHESPV0621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439410/PHESPV0621.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439410/ERR1439410_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439410/ERR1439410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439410/PHESPV0621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439410/PHESPV0621.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 147801244;153564286 ERS1194789 ERX1509788 GENOMIC 507623363 2016-06-10 PHESPV0621 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439410/PHESPV0621.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439410/PHESPV0621.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439410 PHESPV0621 ERR1439525 PHESPV0736 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439525 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439525 51cabced505dcafbd8ad723cb7b9095b;26da045bb9155b7a7b98e75c13be3939 1313 154940886 11c85017271bd2a2256ba45e3c8de26c;686a9c6d17fce6c0ec50f8451beb84db SAMEA4023794 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439525/ERR1439525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439525/ERR1439525_2.fastq.gz 1873834 WGS PHESPV0736 RANDOM 105017664;105511024 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d92c073284eb42a2483a9a846fc2bb1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439525/ERR1439525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439525/ERR1439525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439525/PHESPV0736.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439525/PHESPV0736.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439525/ERR1439525_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439525/ERR1439525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439525/PHESPV0736.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439525/PHESPV0736.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111065500;111570308 ERS1194904 ERX1509903 GENOMIC 365911145 2016-06-10 PHESPV0736 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439525/PHESPV0736.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439525/PHESPV0736.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439525 PHESPV0736 ERR1439451 PHESPV0662 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439451 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439451 4109f530fe4e5f5bc2077f17abaf9a2d;79d331cd2e9c346993ed90384ac0476c 1313 205772540 8b4ceb0e3991bda365546323fd1c7405;616f3adcdffae7b45ec3386acd166a94 SAMEA4023720 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439451/ERR1439451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439451/ERR1439451_2.fastq.gz 2572173 WGS PHESPV0662 RANDOM 139424436;143940803 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 461f71ba6ea4472d46c70ecb040212f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439451/ERR1439451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439451/ERR1439451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439451/PHESPV0662.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439451/PHESPV0662.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439451/ERR1439451_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439451/ERR1439451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439451/PHESPV0662.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439451/PHESPV0662.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 147279781;151758115 ERS1194830 ERX1509829 GENOMIC 504455267 2016-06-10 PHESPV0662 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439451/PHESPV0662.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439451/PHESPV0662.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439451 PHESPV0662 ERR1439538 PHESPV0749 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439538 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439538 da7e948a6098ae670b1f0b0aff8227d6;56318868c2a81fa07b928f74584d31cf 1313 77544062 90a66dbc1318f9ecabcaa3da1b32b43d;fba6e2bdd1a9f2ff0aec4ab73fd3c986 SAMEA4023807 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439538/ERR1439538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439538/ERR1439538_2.fastq.gz 929859 WGS PHESPV0749 RANDOM 52742152;53350384 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1cd25bf2e052347e282cf3818c501bb4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439538/ERR1439538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439538/ERR1439538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439538/PHESPV0749.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439538/PHESPV0749.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439538/ERR1439538_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439538/ERR1439538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439538/PHESPV0749.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439538/PHESPV0749.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56058739;56659223 ERS1194917 ERX1509916 GENOMIC 181356055 2016-06-10 PHESPV0749 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439538/PHESPV0749.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439538/PHESPV0749.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439538 PHESPV0749 ERR1439628 PHESPV0839 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439628 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439628 43f146410691c914af3c993252c5ce14;c36a356988963c16e2ffc12554b1171a 1313 176909906 d608a82f08e6e8f1d7d3d802a467cf1a;f0c33af04b06427123a2879df56476ec SAMEA4023897 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439628/ERR1439628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439628/ERR1439628_2.fastq.gz 1951155 WGS PHESPV0839 RANDOM 115584319;120457671 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 491c7ab9bda543201d9d0169a0784705 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439628/ERR1439628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439628/ERR1439628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439628/PHESPV0839.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439628/PHESPV0839.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439628/ERR1439628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439628/ERR1439628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439628/PHESPV0839.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439628/PHESPV0839.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121742709;126538520 ERS1195007 ERX1510006 GENOMIC 384968627 2016-06-10 PHESPV0839 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439628/PHESPV0839.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439628/PHESPV0839.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439628 PHESPV0839 ERR1439677 PHESPV0888 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439677 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439677 07fb0432fee3813edcd21c6bd6977907;17ef222f21bed35ce6badc02a2934c89 1313 94308256 266584322f4efe513a4c2ba9f9b6156f;b30589f5b95ae6f8cbb850581c1686b0 SAMEA4023946 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439677/ERR1439677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439677/ERR1439677_2.fastq.gz 1157552 WGS PHESPV0888 RANDOM 63488256;66103369 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 585e2f1a95f95fac126ba0e0ad4d23e6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439677/ERR1439677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439677/ERR1439677_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439677/PHESPV0888.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439677/PHESPV0888.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439677/ERR1439677_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439677/ERR1439677_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439677/PHESPV0888.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439677/PHESPV0888.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67415707;69969465 ERS1195056 ERX1510055 GENOMIC 229925353 2016-06-10 PHESPV0888 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439677/PHESPV0888.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439677/PHESPV0888.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439677 PHESPV0888 ERR1439680 PHESPV0891 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439680 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439680 1a34d37aaa0ccdc4db1efa4b2d86c0b2;c59cb7f9a02204df7a23f9b1948a1dad 1313 198547173 3fa85568e9ed64e6e4dff7fee9337bab;a0538ca627d3ac12e3bc2d053f1e760d SAMEA4023949 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439680/ERR1439680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439680/ERR1439680_2.fastq.gz 2202821 WGS PHESPV0891 RANDOM 129535347;134536054 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 05e3bad8a0ab7cbf16c8cb28f7526330 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439680/ERR1439680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439680/ERR1439680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439680/PHESPV0891.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439680/PHESPV0891.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439680/ERR1439680_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439680/ERR1439680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439680/PHESPV0891.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439680/PHESPV0891.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136460927;141390002 ERS1195059 ERX1510058 GENOMIC 435246525 2016-06-10 PHESPV0891 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439680/PHESPV0891.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439680/PHESPV0891.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439680 PHESPV0891 ERR1439966 PHESPV1177 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439966 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439966 080d7bdef2a766d5894dd7f2d9d1582a;ee69b3dcb1d6b80ad79d022f487e35d9 1313 118325217 0f3b39b5e2310a3cbf4a85f9ecfa4372;7e0863752ef4cc6ff3cebc3da5ca0473 SAMEA4024235 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439966/ERR1439966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439966/ERR1439966_2.fastq.gz 1277127 WGS PHESPV1177 RANDOM 85865183;84971987 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 049c28446c77db019e6e343a44fc8e86 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439966/ERR1439966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439966/ERR1439966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439966/PHESPV1177.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439966/PHESPV1177.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439966/ERR1439966_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439966/ERR1439966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439966/PHESPV1177.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439966/PHESPV1177.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82663851;81786720 ERS1195345 ERX1510344 GENOMIC 248908688 2016-06-10 PHESPV1177 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439966/PHESPV1177.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439966/PHESPV1177.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439966 PHESPV1177 ERR1439951 PHESPV1162 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439951 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439951 8f998a126c7770c191d76797ff7b8f34;8134a60d858b679301397589913c7535 1313 134829040 566f7078f7e79b8f6ecdb3669206420c;0bb711cfbfc840ee9f9791cecc4bd6a6 SAMEA4024220 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439951/ERR1439951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439951/ERR1439951_2.fastq.gz 1509542 WGS PHESPV1162 RANDOM 89457075;91370226 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 13c161cb5775be0f021f3684f0dfe5da ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439951/ERR1439951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439951/ERR1439951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439951/PHESPV1162.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439951/PHESPV1162.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439951/ERR1439951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439951/ERR1439951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439951/PHESPV1162.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439951/PHESPV1162.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94514036;96403696 ERS1195330 ERX1510329 GENOMIC 299641745 2016-06-10 PHESPV1162 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439951/PHESPV1162.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439951/PHESPV1162.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439951 PHESPV1162 ERR1439992 PHESPV1203 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439992 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439992 f8628cfc92956f61c1a185fcdf2a7777;0f2d1ff2ed37585f8d70f65f286b8685 1313 106671389 284857cc58107876f0c5654aba2bfb52;c143876c3d508e9d9457fa2d53457ccf SAMEA4024261 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439992/ERR1439992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439992/ERR1439992_2.fastq.gz 1210613 WGS PHESPV1203 RANDOM 70115209;74336565 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d25f5417511c9df4c2114080c7f62a3b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439992/ERR1439992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439992/ERR1439992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439992/PHESPV1203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439992/PHESPV1203.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439992/ERR1439992_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439992/ERR1439992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439992/PHESPV1203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439992/PHESPV1203.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74210981;78351378 ERS1195371 ERX1510370 GENOMIC 240073389 2016-06-10 PHESPV1203 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439992/PHESPV1203.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439992/PHESPV1203.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439992 PHESPV1203 ERR1440054 PHESPV1265 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440054 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440054 b7ce397b1f5861bf1f258b7d05edf3f0;22925da7b598c5c16b065ba8936b9caa 1313 151016320 804f6c5070935c7af53346785ee2b525;b36122fb9ebc7fa374cbd775d017abcd SAMEA4024323 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440054/ERR1440054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440054/ERR1440054_2.fastq.gz 1663215 WGS PHESPV1265 RANDOM 100954077;103421187 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d51d982fd1d81c11cd7e7ca7d20f24f9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440054/ERR1440054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440054/ERR1440054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440054/PHESPV1265.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440054/PHESPV1265.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440054/ERR1440054_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440054/ERR1440054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440054/PHESPV1265.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440054/PHESPV1265.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106456263;108872174 ERS1195433 ERX1510432 GENOMIC 329361177 2016-06-10 PHESPV1265 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440054/PHESPV1265.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440054/PHESPV1265.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440054 PHESPV1265 ERR1440055 PHESPV1266 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440055 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440055 6faa257d05e080e481bfe055d47515b3;511c7dcdf1617b9a0f7e447f93dd526f 1313 196963031 035cb0562ad90c58249d0e13543c3af5;237c95cae5f5f4103c8735ed721b641e SAMEA4024324 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440055/ERR1440055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440055/ERR1440055_2.fastq.gz 2175272 WGS PHESPV1266 RANDOM 131540146;134741524 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c27a90593651d2653414741f70abeacc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440055/ERR1440055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440055/ERR1440055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440055/PHESPV1266.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440055/PHESPV1266.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440055/ERR1440055_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440055/ERR1440055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440055/PHESPV1266.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440055/PHESPV1266.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138428658;141594969 ERS1195434 ERX1510433 GENOMIC 430978197 2016-06-10 PHESPV1266 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440055/PHESPV1266.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440055/PHESPV1266.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440055 PHESPV1266 ERR1440135 PHESPV1348 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440135 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440135 ee532e616f16017684b49c17e2b5b5c5;fc328ca7f3106d18f984380c440773da 1313 103963264 5639702157d0a1e8ca25b22af53fc74a;409a9ae66836fa89e3186b2d8466b2d0 SAMEA4024404 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440135/ERR1440135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440135/ERR1440135_2.fastq.gz 1129089 WGS PHESPV1348 RANDOM 68117913;71713633 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f7f5d3a1135a8a2ae028586281628629 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440135/ERR1440135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440135/ERR1440135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440135/PHESPV1348.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440135/PHESPV1348.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440135/ERR1440135_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440135/ERR1440135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440135/PHESPV1348.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440135/PHESPV1348.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72052505;75555847 ERS1195514 ERX1510513 GENOMIC 223679796 2016-06-10 PHESPV1348 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440135/PHESPV1348.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440135/PHESPV1348.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440135 PHESPV1348 ERR1440080 PHESPV1291 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440080 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440080 893f2f60711fc178af88205ab0df7fdc;65463a4594dbd1c8a1a33237e1f19b1a 1313 121132082 86d8ad61640dab7c90e772a80ce91023;1bf874e743bb19c916c5d2de1526a056 SAMEA4024349 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440080/ERR1440080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440080/ERR1440080_2.fastq.gz 1365149 WGS PHESPV1291 RANDOM 80214083;83488710 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4fde3b3d88c295ca0cbddb6a45ea76c6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440080/ERR1440080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440080/ERR1440080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440080/PHESPV1291.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440080/PHESPV1291.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440080/ERR1440080_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440080/ERR1440080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440080/PHESPV1291.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440080/PHESPV1291.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84766760;88002737 ERS1195459 ERX1510458 GENOMIC 270916325 2016-06-10 PHESPV1291 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440080/PHESPV1291.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440080/PHESPV1291.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440080 PHESPV1291 ERR1440138 PHESPV1351 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440138 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440138 6caa7b5e6d8f9ce76895999e036542b6;1bc09986f137a1a047e50c21f510645b 1313 102093200 0655b0b95852199262bea9adf52c0c83;068d6ef534bbb564909a7e4c9022f458 SAMEA4024407 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440138/ERR1440138_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440138/ERR1440138_2.fastq.gz 1131318 WGS PHESPV1351 RANDOM 67071019;70586794 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e466acc8cbdf3e320e363778f214557 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440138/ERR1440138_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440138/ERR1440138_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440138/PHESPV1351.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440138/PHESPV1351.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440138/ERR1440138_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440138/ERR1440138_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440138/PHESPV1351.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440138/PHESPV1351.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71004813;74421854 ERS1195517 ERX1510516 GENOMIC 224274968 2016-06-10 PHESPV1351 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440138/PHESPV1351.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440138/PHESPV1351.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440138 PHESPV1351 ERR1440394 PHESPV1609 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440394 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440394 98494e2cd7e5f0273b73ff72ea1f5699;483fe12d5006a275e33309e6a1dff728 1313 117665328 311175068b1985da662341e558019031;5b25a14e58a304a5398d66538c14886f SAMEA4024663 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440394/ERR1440394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440394/ERR1440394_2.fastq.gz 1285993 WGS PHESPV1609 RANDOM 83278813;87040516 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c1ca08689d6e18fc6478dc21d1d5d0d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440394/ERR1440394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440394/ERR1440394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440394/PHESPV1609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440394/PHESPV1609.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440394/ERR1440394_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440394/ERR1440394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440394/PHESPV1609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440394/PHESPV1609.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80069926;83805015 ERS1195773 ERX1510772 GENOMIC 249593974 2016-06-10 PHESPV1609 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440394/PHESPV1609.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440394/PHESPV1609.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440394 PHESPV1609 ERR1440390 PHESPV1605 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440390 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440390 682ef766479b8c4cf876ccfe3af62817;c51e92bd845ff969ee6ec3d34b2d6559 1313 153649545 7c3ee421dba14bda944b92d703b54694;a4dcaf7ea2e4d39c96be562747ecc5b6 SAMEA4024659 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440390/ERR1440390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440390/ERR1440390_2.fastq.gz 1689527 WGS PHESPV1605 RANDOM 110395311;112940044 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5dc653c4f47f845021f405191145c3d3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440390/ERR1440390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440390/ERR1440390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440390/PHESPV1605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440390/PHESPV1605.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440390/ERR1440390_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440390/ERR1440390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440390/PHESPV1605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440390/PHESPV1605.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106004372;108535846 ERS1195769 ERX1510768 GENOMIC 331068164 2016-06-10 PHESPV1605 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440390/PHESPV1605.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440390/PHESPV1605.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440390 PHESPV1605 ERR1440399 PHESPV1614 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440399 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440399 c474613462aca5d1016c11cf461a3463;f449700bac3f1d0e97b6eebec2a34fe7 1313 132938834 255967cbbeef7b9df837d2ad32345bfa;a00fe4799e28e9f85bf472200a6bab51 SAMEA4024668 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440399/ERR1440399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440399/ERR1440399_2.fastq.gz 1465686 WGS PHESPV1614 RANDOM 95189921;97944608 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1bb4bbebd3676f47ec2d2d5d8b67cde8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440399/ERR1440399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440399/ERR1440399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440399/PHESPV1614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440399/PHESPV1614.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440399/ERR1440399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440399/ERR1440399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440399/PHESPV1614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440399/PHESPV1614.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91505730;94244554 ERS1195778 ERX1510777 GENOMIC 286286704 2016-06-10 PHESPV1614 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440399/PHESPV1614.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440399/PHESPV1614.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440399 PHESPV1614 ERR1440401 PHESPV1616 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440401 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440401 06e0ac6192fa98d883545c6204a7d7c7;2a3bb8ac1d4bd14e2e166911c616b8f3 1313 150731912 dedd7b3cfe8c65640c99a4255bec939d;f93cbaef1b2a955223fb20876bf0d236 SAMEA4024670 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440401/ERR1440401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440401/ERR1440401_2.fastq.gz 1747450 WGS PHESPV1616 RANDOM 108763534;112974399 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 95d637434dd24b36caf61305f082843c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440401/ERR1440401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440401/ERR1440401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440401/PHESPV1616.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440401/PHESPV1616.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440401/ERR1440401_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440401/ERR1440401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440401/PHESPV1616.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440401/PHESPV1616.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104248862;108412564 ERS1195780 ERX1510779 GENOMIC 344926034 2016-06-10 PHESPV1616 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440401/PHESPV1616.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440401/PHESPV1616.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440401 PHESPV1616 ERR1440428 PHESPV1643 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440428 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440428 f43cdc67b7fbb69a6465b8c51d0bea02;e93776d312fba237864831ca10f93c97 1313 128121554 d01c415b5340f1d8ee7f32a12cad9a97;e3041b6f62d738dca2d058d08dfb9941 SAMEA4024697 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440428/ERR1440428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440428/ERR1440428_2.fastq.gz 1433988 WGS PHESPV1643 RANDOM 91810121;93831382 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e6938526c1ffb66ddc4f65dbbc038a09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440428/ERR1440428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440428/ERR1440428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440428/PHESPV1643.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440428/PHESPV1643.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440428/ERR1440428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440428/ERR1440428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440428/PHESPV1643.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440428/PHESPV1643.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88178810;90197823 ERS1195807 ERX1510806 GENOMIC 272395452 2016-06-10 PHESPV1643 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440428/PHESPV1643.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440428/PHESPV1643.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440428 PHESPV1643 ERR1440426 PHESPV1641 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440426 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440426 d40cae4255ecd898cce274e1e2a389bc;328609bcbe160f7100180f61b5ed0344 1313 103424241 68872f46e238c34808cb680693e3619e;d14b5591edd9781601c9393e67478e86 SAMEA4024695 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440426/ERR1440426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440426/ERR1440426_2.fastq.gz 1144544 WGS PHESPV1641 RANDOM 74535372;75685021 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cadf3956d0256475803948f217357dba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440426/ERR1440426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440426/ERR1440426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440426/PHESPV1641.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440426/PHESPV1641.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440426/ERR1440426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440426/ERR1440426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440426/PHESPV1641.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440426/PHESPV1641.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71687538;72834410 ERS1195805 ERX1510804 GENOMIC 222231279 2016-06-10 PHESPV1641 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440426/PHESPV1641.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440426/PHESPV1641.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440426 PHESPV1641 ERR1440434 PHESPV1649 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440434 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440434 64f74d123fb8a0027d6f49ee2a807d31;1c1f2c51ef9b035a9b53015b1d5983a4 1313 125005399 e3c42e1f69c219301d8a755bab8f842b;0bc42f40794be4290f6460202a8efce1 SAMEA4024703 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440434/ERR1440434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440434/ERR1440434_2.fastq.gz 1366533 WGS PHESPV1649 RANDOM 88055113;92647431 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9c342e7f915a9c8360714eac1517d275 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440434/ERR1440434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440434/ERR1440434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440434/PHESPV1649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440434/PHESPV1649.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440434/ERR1440434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440434/ERR1440434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440434/PHESPV1649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440434/PHESPV1649.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84688324;89251377 ERS1195813 ERX1510812 GENOMIC 264468122 2016-06-10 PHESPV1649 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440434/PHESPV1649.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440434/PHESPV1649.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440434 PHESPV1649 ERR1440438 PHESPV1653 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440438 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440438 5311960803d494e473c93473d738909e;097af46f610deabdef3ff4f8285f9d98 1313 241779230 1fb828cda2abd8b0d984c3fdfd8cf940;448941eff5d29b854d0d86fccfe87c2a SAMEA4024707 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440438/ERR1440438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440438/ERR1440438_2.fastq.gz 2631009 WGS PHESPV1653 RANDOM 169059515;178628646 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 44b173156d3d25f6bbf303933e6943b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440438/ERR1440438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440438/ERR1440438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440438/PHESPV1653.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440438/PHESPV1653.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440438/ERR1440438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440438/ERR1440438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440438/PHESPV1653.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440438/PHESPV1653.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 162504599;172053569 ERS1195817 ERX1510816 GENOMIC 508490840 2016-06-10 PHESPV1653 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440438/PHESPV1653.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440438/PHESPV1653.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440438 PHESPV1653 ERR1440443 PHESPV1658 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440443 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440443 e5b544b47200c65803c498195fdd94ca;629000104ac2e10fb64360b9f15a38c1 1313 151463613 d200cb6afc395d052fc5cb35709adc4e;c9fd611e8b9415a3972d4cc1959bc67b SAMEA4024712 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440443/ERR1440443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440443/ERR1440443_2.fastq.gz 1666224 WGS PHESPV1658 RANDOM 108258660;110653497 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e851462168b739de7af3326bfc5496fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440443/ERR1440443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440443/ERR1440443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440443/PHESPV1658.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440443/PHESPV1658.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440443/ERR1440443_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440443/ERR1440443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440443/PHESPV1658.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440443/PHESPV1658.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103898213;106299821 ERS1195822 ERX1510821 GENOMIC 323461546 2016-06-10 PHESPV1658 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440443/PHESPV1658.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440443/PHESPV1658.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440443 PHESPV1658 ERR1440460 PHESPV1675 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440460 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440460 c3347f5416db28689bb253bf5fe6d688;29617b84edadd69828775c844642c8a0 1313 115649036 40e78c300b55bc2dfb4e7afe8fa44c9c;1d5e05a463996d715ef7f36c2195bd98 SAMEA4024729 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440460/ERR1440460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440460/ERR1440460_2.fastq.gz 1272656 WGS PHESPV1675 RANDOM 82142474;83562211 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 628a52ac70435f2128860daffc3e775d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440460/ERR1440460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440460/ERR1440460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440460/PHESPV1675.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440460/PHESPV1675.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440460/ERR1440460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440460/ERR1440460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440460/PHESPV1675.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440460/PHESPV1675.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78980914;80401755 ERS1195839 ERX1510838 GENOMIC 247904280 2016-06-10 PHESPV1675 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440460/PHESPV1675.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440460/PHESPV1675.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440460 PHESPV1675 ERR1440472 PHESPV1687 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440472 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440472 089ccc562db48a23ef022f573db4746c;b3b7d496ab5d11029d6da9c338d1460e 1313 118256370 77a3c7c56be68f85f10a4cf99d96196a;514312380991a93c8f94fbddb4ff2d2a SAMEA4024741 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440472/ERR1440472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440472/ERR1440472_2.fastq.gz 1282074 WGS PHESPV1687 RANDOM 84073191;87234111 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 24cd80ea958288583809bdf7f0b1bf33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440472/ERR1440472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440472/ERR1440472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440472/PHESPV1687.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440472/PHESPV1687.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440472/ERR1440472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440472/ERR1440472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440472/PHESPV1687.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440472/PHESPV1687.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80878230;84012061 ERS1195851 ERX1510850 GENOMIC 251387821 2016-06-10 PHESPV1687 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440472/PHESPV1687.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440472/PHESPV1687.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440472 PHESPV1687 ERR1440485 PHESPV1700 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440485 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440485 fd4dacf16578a0d1de85d13e34822686;364b83018f04f51eb50298842ec3f8b7 1313 107023196 3363a1ab73ee2c127b8e47d11a4a2574;a6eceb0b71217a14fe79002ec1590011 SAMEA4024754 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440485/ERR1440485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440485/ERR1440485_2.fastq.gz 1187676 WGS PHESPV1700 RANDOM 77083500;77638388 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e5120c46ca027e640218999b0afd06b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440485/ERR1440485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440485/ERR1440485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440485/PHESPV1700.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440485/PHESPV1700.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440485/ERR1440485_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440485/ERR1440485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440485/PHESPV1700.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440485/PHESPV1700.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74117446;74678277 ERS1195864 ERX1510863 GENOMIC 229372847 2016-06-10 PHESPV1700 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440485/PHESPV1700.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440485/PHESPV1700.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440485 PHESPV1700 ERR1440486 PHESPV1701 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440486 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440486 828f44770c29182a8d8f36caf122ef51;4ab62de291e9b8039384a75595b1b74c 1313 118623738 0e8fb464d43c520a10907d0a2779e2d4;5e53f42960a940b42267e641157a57e7 SAMEA4024755 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440486/ERR1440486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440486/ERR1440486_2.fastq.gz 1309924 WGS PHESPV1701 RANDOM 85261424;86186921 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cc4c072b25220172d06337eff530e8e4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440486/ERR1440486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440486/ERR1440486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440486/PHESPV1701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440486/PHESPV1701.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440486/ERR1440486_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440486/ERR1440486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440486/PHESPV1701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440486/PHESPV1701.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82002948;82936387 ERS1195865 ERX1510864 GENOMIC 254540031 2016-06-10 PHESPV1701 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440486/PHESPV1701.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440486/PHESPV1701.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440486 PHESPV1701 ERR1440517 PHESPV1732 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440517 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440517 77c4f3fe2408c3b77c61578f9646adeb;dccf1eb5db305ebda307b7ccd24f5aea 1313 144569369 59ce08a6e0041a68f16d8b09add9bb8d;6ef19b5ed9225be4837912a4fdddcb1e SAMEA4024786 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440517/ERR1440517_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440517/ERR1440517_2.fastq.gz 1581227 WGS PHESPV1732 RANDOM 102563122;105817136 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ba072e2a8e8e058e85f789f5598df229 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440517/ERR1440517_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440517/ERR1440517_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440517/PHESPV1732.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440517/PHESPV1732.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440517/ERR1440517_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440517/ERR1440517_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440517/PHESPV1732.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440517/PHESPV1732.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98459793;101711671 ERS1195896 ERX1510895 GENOMIC 305190356 2016-06-10 PHESPV1732 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440517/PHESPV1732.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440517/PHESPV1732.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440517 PHESPV1732 ERR1440521 PHESPV1736 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440521 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440521 a84d2ba7790acfdf06eea8ff4db1ec50;3d69ccc2be5a459c6fb387ece2303495 1313 192049588 e8db3c174a55e3cfa225c72e6ea87f9b;330dce28629e418bd72a53b8d5754626 SAMEA4024790 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440521/ERR1440521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440521/ERR1440521_2.fastq.gz 2251800 WGS PHESPV1736 RANDOM 140702281;141738080 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ae105a588de768fc28070442102270a0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440521/ERR1440521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440521/ERR1440521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440521/PHESPV1736.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440521/PHESPV1736.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440521/ERR1440521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440521/ERR1440521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440521/PHESPV1736.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440521/PHESPV1736.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135083857;136051208 ERS1195900 ERX1510899 GENOMIC 444567570 2016-06-10 PHESPV1736 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440521/PHESPV1736.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440521/PHESPV1736.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440521 PHESPV1736 ERR1440527 PHESPV1742 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440527 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440527 d66c5447dd20e67e0c857299a8a74c6a;b00d52cf68f823822dd070d0c19aff2e 1313 131811385 20d458ee91b989c8504ef4bc34fd601c;a5996984ba17f6180801e4b45df0e032 SAMEA4024796 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440527/ERR1440527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440527/ERR1440527_2.fastq.gz 1452368 WGS PHESPV1742 RANDOM 94077995;96347095 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0819d1aa77dd349ec2899d6d4975d839 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440527/ERR1440527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440527/ERR1440527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440527/PHESPV1742.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440527/PHESPV1742.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440527/ERR1440527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440527/ERR1440527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440527/PHESPV1742.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440527/PHESPV1742.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90352511;92624747 ERS1195906 ERX1510905 GENOMIC 282010822 2016-06-10 PHESPV1742 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440527/PHESPV1742.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440527/PHESPV1742.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440527 PHESPV1742 ERR1440536 PHESPV1751 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440536 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440536 7e45e10c9b999f943b257a7f5470f7d1;6505fb6e93831258ea7d3347ae4f3d87 1313 104588470 5a5823f22a87b33f4a631b7bab63cb51;854330bdeb08f8dd2919fd9ce3c21464 SAMEA4024805 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440536/ERR1440536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440536/ERR1440536_2.fastq.gz 1158081 WGS PHESPV1751 RANDOM 75338500;75942459 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 739982eb0f1dcb323500e3f89ac00ffd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440536/ERR1440536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440536/ERR1440536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440536/PHESPV1751.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440536/PHESPV1751.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440536/ERR1440536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440536/ERR1440536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440536/PHESPV1751.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440536/PHESPV1751.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72438243;73050714 ERS1195915 ERX1510914 GENOMIC 224322761 2016-06-10 PHESPV1751 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440536/PHESPV1751.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440536/PHESPV1751.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440536 PHESPV1751 ERR1440499 PHESPV1714 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440499 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440499 0c15fb45fb1770e570f70296e560df4b;f67c800b11e3d772823f2e760a793dc3 1313 135128055 7243eb86a05e2dd5ce55e999ed088b49;f5b667d0e08a53b4db9bb7439e73d3fd SAMEA4024768 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440499/ERR1440499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440499/ERR1440499_2.fastq.gz 1499658 WGS PHESPV1714 RANDOM 97311831;98170953 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c01e5a2ee1f0b1531ce4b9460f921d6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440499/ERR1440499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440499/ERR1440499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440499/PHESPV1714.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440499/PHESPV1714.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440499/ERR1440499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440499/ERR1440499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440499/PHESPV1714.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440499/PHESPV1714.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93486159;94363102 ERS1195878 ERX1510877 GENOMIC 291046890 2016-06-10 PHESPV1714 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440499/PHESPV1714.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440499/PHESPV1714.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440499 PHESPV1714 ERR1440541 PHESPV1756 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440541 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440541 5a135788462245d1422af2fb499a770c;e8295b191787234072a202edc8c290b3 1313 173572615 4c1ea544ca1e7741ff5a1ac360857159;415d0189916494d115d4425602825e75 SAMEA4024810 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440541/ERR1440541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440541/ERR1440541_2.fastq.gz 1861102 WGS PHESPV1756 RANDOM 123396351;125353414 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5cdd563714d33e792458bd29dd271f91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440541/ERR1440541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440541/ERR1440541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440541/PHESPV1756.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440541/PHESPV1756.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440541/ERR1440541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440541/ERR1440541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440541/PHESPV1756.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440541/PHESPV1756.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118506881;120483464 ERS1195920 ERX1510919 GENOMIC 352208323 2016-06-10 PHESPV1756 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440541/PHESPV1756.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440541/PHESPV1756.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440541 PHESPV1756 ERR1440548 PHESPV1763 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440548 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440548 ec8efde1d13e8b1e45341ac2225090a6;4f987d5fe398c99d139d0158e9171614 1313 63959584 f83471eeaca4870b6be91016308de1db;4b2eadffe168185222cf10f4ca3fb039 SAMEA4024817 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440548/ERR1440548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440548/ERR1440548_2.fastq.gz 751509 WGS PHESPV1763 RANDOM 46956319;47595420 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d6e2ff361022ffe966098a2110fadbc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440548/ERR1440548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440548/ERR1440548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440548/PHESPV1763.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440548/PHESPV1763.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440548/ERR1440548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440548/ERR1440548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440548/PHESPV1763.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440548/PHESPV1763.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 45154199;45752584 ERS1195927 ERX1510926 GENOMIC 147433913 2016-06-10 PHESPV1763 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440548/PHESPV1763.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440548/PHESPV1763.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440548 PHESPV1763 ERR1440564 PHESPV1779 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440564 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440564 878c56049d7b25a4fbd83e0130e2e558;431b909fb1ede4187d3d2493ea48ae48 1313 166846059 743fc7903667e68d0c7caef707a0e1df;5d31441ce3788f6135b5fee32ba65022 SAMEA4024833 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440564/ERR1440564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440564/ERR1440564_2.fastq.gz 1959245 WGS PHESPV1779 RANDOM 122343588;124040201 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 53dc718e4892782c62a6fb942b87cf77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440564/ERR1440564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440564/ERR1440564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440564/PHESPV1779.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440564/PHESPV1779.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440564/ERR1440564_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440564/ERR1440564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440564/PHESPV1779.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440564/PHESPV1779.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117358150;119004168 ERS1195943 ERX1510942 GENOMIC 387434109 2016-06-10 PHESPV1779 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440564/PHESPV1779.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440564/PHESPV1779.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440564 PHESPV1779 ERR1440593 PHESPV1808 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440593 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440593 5bf30e1bcce7bc5622fec88340a57d53;ff28684bd08c439ecdcc3b1f97f66a08 1313 193020184 1684ddb9ed25711b24811d9033e5f16b;00bcc6c44242d1525ab94c997440a7aa SAMEA4024862 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440593/ERR1440593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440593/ERR1440593_2.fastq.gz 2247943 WGS PHESPV1808 RANDOM 129165678;132493648 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ca26f77ff53c8df6e64ba917a2f24b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440593/ERR1440593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440593/ERR1440593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440593/PHESPV1808.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440593/PHESPV1808.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440593/ERR1440593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440593/ERR1440593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440593/PHESPV1808.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440593/PHESPV1808.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136222416;139458103 ERS1195972 ERX1510971 GENOMIC 446092149 2016-06-10 PHESPV1808 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440593/PHESPV1808.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440593/PHESPV1808.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440593 PHESPV1808 ERR1439096 PHESPV0307 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439096 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439096 59112a9dec4c56db3396e30bd67478d7;058ac63d157436c1c91a79819593dce6 1313 197208468 e1e5d7fdc83f9c24b023978811346784;431df5e06033532f462b06fda2b11131 SAMEA4023365 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439096/ERR1439096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439096/ERR1439096_2.fastq.gz 2167111 WGS PHESPV0307 RANDOM 143262187;141552625 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a8c25aa3820e78e04e050b639f3ad3b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439096/ERR1439096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439096/ERR1439096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439096/PHESPV0307.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439096/PHESPV0307.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439096/ERR1439096_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439096/ERR1439096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439096/PHESPV0307.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439096/PHESPV0307.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137653488;135955595 ERS1194475 ERX1509474 GENOMIC 423376888 2016-06-10 PHESPV0307 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439096/PHESPV0307.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439096/PHESPV0307.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439096 PHESPV0307 ERR1439577 PHESPV0788 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439577 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439577 173ce1d2743c33cbd6c96746cf5d9f32;a90cf0623ad6d4ece2bc81c3c3c2939d 1313 371091550 88a47f0e457900df11b80073cf09ba51;0c54d3eca73c49e970c186adb03f642e SAMEA4023846 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439577/ERR1439577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439577/ERR1439577_2.fastq.gz 2940114 WGS PHESPV0788 RANDOM 229168009;233768604 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a2d52b4c50d7df93c700413205a7ebb1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439577/ERR1439577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439577/ERR1439577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439577/PHESPV0788.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439577/PHESPV0788.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439577/ERR1439577_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439577/ERR1439577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439577/PHESPV0788.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439577/PHESPV0788.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 237910663;242446913 ERS1194956 ERX1509955 GENOMIC 568425271 2016-06-10 PHESPV0788 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439577/PHESPV0788.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439577/PHESPV0788.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439577 PHESPV0788 ERR1440352 PHESPV1567 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440352 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440352 9a3a94a37b7f2b728d362d6d2c00e589;dfeb2177245f782b2c5b117ff3f42d26 1313 165759830 4757fe77d02fa406d6e151f4fd38f2a3;0228efa993c3491cd88cf1fc526ca885 SAMEA4024621 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440352/ERR1440352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440352/ERR1440352_2.fastq.gz 1811164 WGS PHESPV1567 RANDOM 110879889;111828898 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4195123790c84aef9535bbb2881d398b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440352/ERR1440352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440352/ERR1440352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440352/PHESPV1567.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440352/PHESPV1567.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440352/ERR1440352_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440352/ERR1440352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440352/PHESPV1567.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440352/PHESPV1567.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116750237;117692434 ERS1195731 ERX1510730 GENOMIC 358285346 2016-06-10 PHESPV1567 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440352/PHESPV1567.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440352/PHESPV1567.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440352 PHESPV1567 ERR1439570 PHESPV0781 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439570 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439570 b5893dbeb5256894bda9e01a1fcc1e72;ca4133a7e2fdb5275853582c70fc731e 1313 231553358 bff63b9d859e89f40930955ab77b5df7;125ecae1eddc654cffd68650679ab5ff SAMEA4023839 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439570/ERR1439570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439570/ERR1439570_2.fastq.gz 2564933 WGS PHESPV0781 RANDOM 167228794;165689587 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 65de2bd88d8fb0dadf54ed94e1e5175b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439570/ERR1439570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439570/ERR1439570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439570/PHESPV0781.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439570/PHESPV0781.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439570/ERR1439570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439570/ERR1439570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439570/PHESPV0781.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439570/PHESPV0781.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 160740333;159202108 ERS1194949 ERX1509948 GENOMIC 482971198 2016-06-10 PHESPV0781 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439570/PHESPV0781.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439570/PHESPV0781.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439570 PHESPV0781 ERR1439571 PHESPV0782 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439571 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439571 528c982fc448181393492f90565c8042;d6efcf7fee5b626c0270daaf8c4b3f58 1313 55151108 f51cbe9c593862fedb2465a4fe48942b;afc34def6668fdfbc2fb07326f7fe098 SAMEA4023840 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439571/ERR1439571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439571/ERR1439571_2.fastq.gz 583669 WGS PHESPV0782 RANDOM 39778948;39830487 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ac70d91ef84f32aa347a66fdd486954 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439571/ERR1439571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439571/ERR1439571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439571/PHESPV0782.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439571/PHESPV0782.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439571/ERR1439571_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439571/ERR1439571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439571/PHESPV0782.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439571/PHESPV0782.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 38322226;38375410 ERS1194950 ERX1509949 GENOMIC 113765241 2016-06-10 PHESPV0782 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439571/PHESPV0782.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439571/PHESPV0782.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439571 PHESPV0782 ERR1439572 PHESPV0783 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439572 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439572 ec648ee0d12f9bd6cd9fe89ecf5f269a;2df84a764b7d99157bbcf6e476b62dc9 1313 149733065 d59e9a0fee7f252b05b4d0b028a9c824;fb49358c74cc32abf6aa4d45a36e9dd4 SAMEA4023841 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439572/ERR1439572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439572/ERR1439572_2.fastq.gz 1661399 WGS PHESPV0783 RANDOM 97171574;99556516 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9d6d251e698ff8a7debdf7495f990b0d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439572/ERR1439572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439572/ERR1439572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439572/PHESPV0783.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439572/PHESPV0783.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439572/ERR1439572_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439572/ERR1439572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439572/PHESPV0783.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439572/PHESPV0783.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102506472;104843773 ERS1194951 ERX1509950 GENOMIC 328235955 2016-06-10 PHESPV0783 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439572/PHESPV0783.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439572/PHESPV0783.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439572 PHESPV0783 ERR1439585 PHESPV0796 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439585 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439585 fefc7a3b77a61f5d94c56ac13b607b29;6355d9843b68ecc962238919608fd1aa 1313 119785222 7404e0a886cd2f80f6207309d088bbb9;5fac1a3cb14df54ee4d78a8b2a0d6f3b SAMEA4023854 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439585/ERR1439585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439585/ERR1439585_2.fastq.gz 1325681 WGS PHESPV0796 RANDOM 78283033;81035536 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8660b88cbeba2cf3644474138946e22a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439585/ERR1439585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439585/ERR1439585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439585/PHESPV0796.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439585/PHESPV0796.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439585/ERR1439585_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439585/ERR1439585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439585/PHESPV0796.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439585/PHESPV0796.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82673960;85365352 ERS1194964 ERX1509963 GENOMIC 261599472 2016-06-10 PHESPV0796 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439585/PHESPV0796.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439585/PHESPV0796.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439585 PHESPV0796 ERR1439586 PHESPV0797 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439586 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439586 0d25a89733929061f290025b2ad0acc5;a1b3e5f7c1e6f29bab2d010098ee4cde 1313 83344716 90bc8b81fec7e18717c1411de5fab665;725943cf1a8e5d6f84fe81602feb3db6 SAMEA4023855 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439586/ERR1439586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439586/ERR1439586_2.fastq.gz 867164 WGS PHESPV0797 RANDOM 59190527;60466805 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d66c41a4e5b4877fba0282d48f9d495a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439586/ERR1439586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439586/ERR1439586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439586/PHESPV0797.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439586/PHESPV0797.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439586/ERR1439586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439586/ERR1439586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439586/PHESPV0797.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439586/PHESPV0797.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57025523;58293931 ERS1194965 ERX1509964 GENOMIC 168523041 2016-06-10 PHESPV0797 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439586/PHESPV0797.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439586/PHESPV0797.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439586 PHESPV0797 ERR1439588 PHESPV0799 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439588 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439588 4b2c0fd85546ad2b72c81515fcb0cae9;ed94697c81ee9cea4e8072b35c7755d4 1313 130147177 8d62749aa07fd99ab5baa6123267ae56;f220554f5815b8952df2d27098d03b54 SAMEA4023857 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439588/ERR1439588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439588/ERR1439588_2.fastq.gz 1417433 WGS PHESPV0799 RANDOM 84101023;88566213 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 01973c3e06995f2dad3c810e8425f91a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439588/ERR1439588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439588/ERR1439588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439588/PHESPV0799.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439588/PHESPV0799.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439588/ERR1439588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439588/ERR1439588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439588/PHESPV0799.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439588/PHESPV0799.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88795061;93180292 ERS1194967 ERX1509966 GENOMIC 279425410 2016-06-10 PHESPV0799 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439588/PHESPV0799.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439588/PHESPV0799.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439588 PHESPV0799 ERR1439591 PHESPV0802 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439591 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439591 e53bb54841b68158e8890cea6475752c;685eac79fd5d4b10e9814f18b7f90665 1313 107548628 95b265ffe6862d42e18f9719c78706c7;a78212314b953453d2fab907e75e182a SAMEA4023860 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439591/ERR1439591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439591/ERR1439591_2.fastq.gz 1180261 WGS PHESPV0802 RANDOM 68887204;71573502 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac10ffdc8cd75749b133e510ec75bca3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439591/ERR1439591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439591/ERR1439591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439591/PHESPV0802.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439591/PHESPV0802.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439591/ERR1439591_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439591/ERR1439591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439591/PHESPV0802.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439591/PHESPV0802.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72828580;75439499 ERS1194970 ERX1509969 GENOMIC 232252832 2016-06-10 PHESPV0802 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439591/PHESPV0802.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439591/PHESPV0802.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439591 PHESPV0802 ERR1439929 PHESPV1140 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439929 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439929 044a866ff15c51b1a4c42284dbb17748;ee31151e347169667b7e34e2f6ec4d44 1313 86391829 acad3671ef25ea01d1db40d15f5ebc97;01e1ecff525fc97fbedb593854616d01 SAMEA4024198 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439929/ERR1439929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439929/ERR1439929_2.fastq.gz 1022871 WGS PHESPV1140 RANDOM 57686725;59794992 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6b3db6527580b51c149cd3b1937785e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439929/ERR1439929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439929/ERR1439929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439929/PHESPV1140.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439929/PHESPV1140.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439929/ERR1439929_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439929/ERR1439929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439929/PHESPV1140.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439929/PHESPV1140.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61231079;63320874 ERS1195308 ERX1510307 GENOMIC 203274621 2016-06-10 PHESPV1140 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439929/PHESPV1140.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439929/PHESPV1140.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439929 PHESPV1140 ERR1439997 PHESPV1208 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439997 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439997 e8b8b4e490be025c85123d7ed56c4b0a;c006eb0a30ea1dd0bda736114fbe882c 1313 139158639 1dbd7da717c8217f9bd8f573d184cdec;c697e43e51657418331c0a2bd22ad0de SAMEA4024266 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439997/ERR1439997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439997/ERR1439997_2.fastq.gz 1603522 WGS PHESPV1208 RANDOM 92142758;95872578 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e02867d702fb66732865b92adb26ac53 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439997/ERR1439997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439997/ERR1439997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439997/PHESPV1208.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439997/PHESPV1208.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439997/ERR1439997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439997/ERR1439997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439997/PHESPV1208.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439997/PHESPV1208.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97404739;101078534 ERS1195376 ERX1510375 GENOMIC 318382408 2016-06-10 PHESPV1208 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439997/PHESPV1208.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439997/PHESPV1208.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439997 PHESPV1208 ERR1440192 PHESPV1406 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440192 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440192 e7ad784cd0ae7f88397fec55b78ee6d6;a7a7fa5d80bbc46e8d8467380eda5ac0 1313 133660354 3e9485494030a8b378b68835a27e51d0;e780e205ec947e9e2213d9feb959a144 SAMEA4024461 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440192/ERR1440192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440192/ERR1440192_2.fastq.gz 1597913 WGS PHESPV1406 RANDOM 90179530;92650896 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 252cf4a4ce6a203f69a79c494c5a9600 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440192/ERR1440192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440192/ERR1440192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440192/PHESPV1406.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440192/PHESPV1406.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440192/ERR1440192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440192/ERR1440192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440192/PHESPV1406.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440192/PHESPV1406.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95451373;97871410 ERS1195571 ERX1510570 GENOMIC 317672602 2016-06-10 PHESPV1406 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440192/PHESPV1406.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440192/PHESPV1406.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440192 PHESPV1406 ERR1438806 PHESPV0016 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438806 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438806 74d8f9e8fc1eb3aa88ba2b3ee81fc82a;648de11192f622b9c15b2c08d1f03650 1313 118806173 5d9994b62342fc2280c9a2b2fcee2a00;a410181dadad70d2595088196bf0f6e9 SAMEA4023075 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438806/ERR1438806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438806/ERR1438806_2.fastq.gz 1364567 WGS PHESPV0016 RANDOM 79449430;81598031 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 22eb619f07dafcbcb38856365a5be3dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438806/ERR1438806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438806/ERR1438806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438806/PHESPV0016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438806/PHESPV0016.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438806/ERR1438806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438806/ERR1438806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438806/PHESPV0016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438806/PHESPV0016.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83984900;86127673 ERS1194185 ERX1509184 GENOMIC 270595733 2016-06-10 PHESPV0016 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438806/PHESPV0016.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438806/PHESPV0016.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438806 PHESPV0016 ERR1438836 PHESPV0046 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438836 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438836 7eab03d36f2694791b87705cbf9b56f3;f7bc9d468ecbdb959b0015771f2ade6c 1313 195868450 a239437ba02b2fbf2a74bfcc6cc30b0f;44841d5ca1af3b5acc6a061cfcd8f3d7 SAMEA4023105 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438836/ERR1438836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438836/ERR1438836_2.fastq.gz 2183064 WGS PHESPV0046 RANDOM 130486152;133527290 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a9a54ed26801d9e882a559e2ad9793e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438836/ERR1438836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438836/ERR1438836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438836/PHESPV0046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438836/PHESPV0046.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438836/ERR1438836_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438836/ERR1438836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438836/PHESPV0046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438836/PHESPV0046.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137379630;140427110 ERS1194215 ERX1509214 GENOMIC 432998636 2016-06-10 PHESPV0046 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438836/PHESPV0046.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438836/PHESPV0046.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438836 PHESPV0046 ERR1438890 PHESPV0100 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438890 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438890 0267b7b1e27165a978d5c98f1c8038a4;756daa7d5ab9530fd9fe0edd71d6b09c 1313 87840990 f3e19d714310b155cec2d96e91663da4;3c935415788bdaae396984752d553cad SAMEA4023159 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438890/ERR1438890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438890/ERR1438890_2.fastq.gz 1031875 WGS PHESPV0100 RANDOM 58536699;61303566 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4accb7027c962a90188ceca2beda64ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438890/ERR1438890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438890/ERR1438890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438890/PHESPV0100.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438890/PHESPV0100.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438890/ERR1438890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438890/ERR1438890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438890/PHESPV0100.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438890/PHESPV0100.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62124652;64863704 ERS1194269 ERX1509268 GENOMIC 205167439 2016-06-10 PHESPV0100 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438890/PHESPV0100.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438890/PHESPV0100.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438890 PHESPV0100 ERR1438917 PHESPV0127 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438917 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438917 c7322fe055697a15b5884235c793c778;f08ff923874cf750d11f663a67b09907 1313 190494723 2e90e3111cceaa67a72aafdb01a8359f;93fc3f4024ad7c3f94d1ebd88dab8b32 SAMEA4023186 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438917/ERR1438917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438917/ERR1438917_2.fastq.gz 2132053 WGS PHESPV0127 RANDOM 127575813;130352448 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6fb70f1c7a7dbe2f8c9554c4b4a5eccd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438917/ERR1438917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438917/ERR1438917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438917/PHESPV0127.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438917/PHESPV0127.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438917/ERR1438917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438917/ERR1438917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438917/PHESPV0127.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438917/PHESPV0127.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134311057;137093776 ERS1194296 ERX1509295 GENOMIC 423352072 2016-06-10 PHESPV0127 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438917/PHESPV0127.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438917/PHESPV0127.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438917 PHESPV0127 ERR1439334 PHESPV0545 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439334 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439334 e7f9745738feed1ef2755ba6234f13fa;45ac789a164e61746f890ea17a7e484a 1313 219129589 dbdba580b65f4c316ec76393e2d63f1d;bde18104b6569029dc66464087cab485 SAMEA4023603 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439334/ERR1439334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439334/ERR1439334_2.fastq.gz 2663154 WGS PHESPV0545 RANDOM 146767728;152513169 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 873d055d81ba1b2dcf37d0be891b8a63 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439334/ERR1439334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439334/ERR1439334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439334/PHESPV0545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439334/PHESPV0545.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439334/ERR1439334_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439334/ERR1439334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439334/PHESPV0545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439334/PHESPV0545.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 154958573;160619866 ERS1194713 ERX1509712 GENOMIC 518934164 2016-06-10 PHESPV0545 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439334/PHESPV0545.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439334/PHESPV0545.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439334 PHESPV0545 ERR1439373 PHESPV0584 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439373 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439373 cb079c52a59e1ec462a88dff2d74a874;c59f863a6837ed1df16be6bbc46dd452 1313 237841857 f90552839a5825adf636e70147e1a8ef;e1b574ce54a0ef19dd169890c414b837 SAMEA4023642 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439373/ERR1439373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439373/ERR1439373_2.fastq.gz 2991223 WGS PHESPV0584 RANDOM 161731523;166643218 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 13fc96ba12dced593cb679351272addd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439373/ERR1439373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439373/ERR1439373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439373/PHESPV0584.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439373/PHESPV0584.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439373/ERR1439373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439373/ERR1439373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439373/PHESPV0584.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439373/PHESPV0584.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 170804264;175713532 ERS1194752 ERX1509751 GENOMIC 586395745 2016-06-10 PHESPV0584 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439373/PHESPV0584.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439373/PHESPV0584.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439373 PHESPV0584 ERR1439456 PHESPV0667 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439456 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439456 3884c175b5d7983d17e05b64ba9b1ad1;ba00c5c887ea775ffaae99ad1f0ed9f2 1313 88999643 7df38d55a9a4bdac1fc6003a59796ff5;3e485cb94918bc46f9515cfdb6ff741b SAMEA4023725 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439456/ERR1439456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439456/ERR1439456_2.fastq.gz 970795 WGS PHESPV0667 RANDOM 63718943;65124573 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bb0ae3a3133f730fd2a4ab1d34be6127 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439456/ERR1439456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439456/ERR1439456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439456/PHESPV0667.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439456/PHESPV0667.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439456/ERR1439456_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439456/ERR1439456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439456/PHESPV0667.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439456/PHESPV0667.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61221579;62636571 ERS1194835 ERX1509834 GENOMIC 190523515 2016-06-10 PHESPV0667 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439456/PHESPV0667.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439456/PHESPV0667.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439456 PHESPV0667 ERR1439470 PHESPV0681 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439470 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439470 f0f25e5b70310b6692c6b6c6e7a709c3;9fc5700107a70a889997cc77e3a86222 1313 151311760 eed3a522e914a8fab25b9675b19a02d8;bbc1e3e452dd5e68bdd4e218418a2838 SAMEA4023739 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439470/ERR1439470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439470/ERR1439470_2.fastq.gz 1637978 WGS PHESPV0681 RANDOM 109580462;108795900 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9e61121e47f282580824fc099c7cc034 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439470/ERR1439470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439470/ERR1439470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439470/PHESPV0681.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439470/PHESPV0681.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439470/ERR1439470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439470/ERR1439470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439470/PHESPV0681.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439470/PHESPV0681.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105306243;104530991 ERS1194849 ERX1509848 GENOMIC 315304867 2016-06-10 PHESPV0681 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439470/PHESPV0681.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439470/PHESPV0681.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439470 PHESPV0681 ERR1439475 PHESPV0686 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439475 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439475 d048f6f712c264b069783b6b7eda2e1e;248da0699176128e4807259422048b64 1313 111397357 60cc4e9168ec356cf9e0beb80b32f6f2;6c8ad475ca36827a6a536a63e794d175 SAMEA4023744 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439475/ERR1439475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439475/ERR1439475_2.fastq.gz 1343682 WGS PHESPV0686 RANDOM 75048784;77864254 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9f3da5b25bf71a4ec5ea27433508101 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439475/ERR1439475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439475/ERR1439475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439475/PHESPV0686.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439475/PHESPV0686.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439475/ERR1439475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439475/ERR1439475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439475/PHESPV0686.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439475/PHESPV0686.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79630283;82500168 ERS1194854 ERX1509853 GENOMIC 262957751 2016-06-10 PHESPV0686 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439475/PHESPV0686.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439475/PHESPV0686.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439475 PHESPV0686 ERR1439476 PHESPV0687 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439476 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439476 98e5eb20ee17776836c81dccefdbdc51;5b0b64f649b0d384f39ef6b811e64902 1313 86175217 f57af0432872228da7891b20e4b9a789;8ec3731593f93cbcf0ffb98e673cb991 SAMEA4023745 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439476/ERR1439476_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439476/ERR1439476_2.fastq.gz 999525 WGS PHESPV0687 RANDOM 57621045;58607104 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1993f9b16576c1eb3d549b6d0d734bd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439476/ERR1439476_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439476/ERR1439476_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439476/PHESPV0687.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439476/PHESPV0687.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439476/ERR1439476_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439476/ERR1439476_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439476/PHESPV0687.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439476/PHESPV0687.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61082928;62072347 ERS1194855 ERX1509854 GENOMIC 198497600 2016-06-10 PHESPV0687 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439476/PHESPV0687.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439476/PHESPV0687.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439476 PHESPV0687 ERR1439550 PHESPV0761 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439550 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439550 5c0f74fa7808e8cdddfcc61f02f0dd78;ddaf042253f467f3bdde759817142159 1313 113959318 4c3e462dadaf1076a727e04b01d8a3a4;efcc500e64177f542fc02fafe6817b4b SAMEA4023819 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439550/ERR1439550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439550/ERR1439550_2.fastq.gz 1300759 WGS PHESPV0761 RANDOM 75038288;78448705 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1abe1c062fca3090db3758bbc6866a01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439550/ERR1439550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439550/ERR1439550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439550/PHESPV0761.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439550/PHESPV0761.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439550/ERR1439550_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439550/ERR1439550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439550/PHESPV0761.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439550/PHESPV0761.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79364523;82746216 ERS1194929 ERX1509928 GENOMIC 257758934 2016-06-10 PHESPV0761 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439550/PHESPV0761.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439550/PHESPV0761.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439550 PHESPV0761 ERR1439508 PHESPV0719 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439508 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439508 0393304102475e3f7b7f20dc75ae04f4;63751dbf3721f1c32cdb1a440eadf5c7 1313 133006209 010e35b94cbb87ae0198590fcf3193a5;ece3042e5bdcda0fecef7550140375a2 SAMEA4023777 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439508/ERR1439508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439508/ERR1439508_2.fastq.gz 1608255 WGS PHESPV0719 RANDOM 89523707;92859104 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b7b972e450a25d428ec86a7cc1594b0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439508/ERR1439508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439508/ERR1439508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439508/PHESPV0719.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439508/PHESPV0719.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439508/ERR1439508_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439508/ERR1439508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439508/PHESPV0719.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439508/PHESPV0719.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94902976;98301054 ERS1194887 ERX1509886 GENOMIC 314809350 2016-06-10 PHESPV0719 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439508/PHESPV0719.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439508/PHESPV0719.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439508 PHESPV0719 ERR1439513 PHESPV0724 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439513 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439513 ed683178f14b7b41d1626770277586d6;4a85f935c7c3d9399f1a94ac111575ce 1313 124285660 b011e8d10ec026a719e854937f8a03c8;e34cfa474730168989d2840065a73cd2 SAMEA4023782 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439513/ERR1439513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439513/ERR1439513_2.fastq.gz 1496814 WGS PHESPV0724 RANDOM 83295309;87113291 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f250a8cbe177fa2d56953c3c0e0b525b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439513/ERR1439513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439513/ERR1439513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439513/PHESPV0724.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439513/PHESPV0724.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439513/ERR1439513_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439513/ERR1439513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439513/PHESPV0724.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439513/PHESPV0724.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88350036;92216221 ERS1194892 ERX1509891 GENOMIC 292774011 2016-06-10 PHESPV0724 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439513/PHESPV0724.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439513/PHESPV0724.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439513 PHESPV0724 ERR1439568 PHESPV0779 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439568 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439568 c3bc20d948a70cacb9792d06458c99af;063f50f8ac6ce6b3b1e144f92b988a36 1313 99293313 9f17f21429d17f1413d3369b943e3068;90dbc70ce2b64cab48aede42dc4ec320 SAMEA4023837 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439568/ERR1439568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439568/ERR1439568_2.fastq.gz 1104942 WGS PHESPV0779 RANDOM 69432380;69448990 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 446b48305a0971eb308b1b39f23d0f54 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439568/ERR1439568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439568/ERR1439568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439568/PHESPV0779.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439568/PHESPV0779.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439568/ERR1439568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439568/ERR1439568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439568/PHESPV0779.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439568/PHESPV0779.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66629961;66686835 ERS1194947 ERX1509946 GENOMIC 201126121 2016-06-10 PHESPV0779 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439568/PHESPV0779.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439568/PHESPV0779.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439568 PHESPV0779 ERR1439569 PHESPV0780 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439569 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439569 4501ac4535525a4cb90723471a631858;757181073fb23d06fd1c3bef699d6b34 1313 127506404 a4bdb8612b8f89b04346abd3f32237e4;d3a1fd9b1d1047afb0274dc5866d97d2 SAMEA4023838 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439569/ERR1439569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439569/ERR1439569_2.fastq.gz 1390786 WGS PHESPV0780 RANDOM 87454716;90409245 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d47d92a44364226853bb4fd7a6748cab ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439569/ERR1439569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439569/ERR1439569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439569/PHESPV0780.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439569/PHESPV0780.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439569/ERR1439569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439569/ERR1439569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439569/PHESPV0780.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439569/PHESPV0780.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83886733;86869563 ERS1194948 ERX1509947 GENOMIC 253640004 2016-06-10 PHESPV0780 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439569/PHESPV0780.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439569/PHESPV0780.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439569 PHESPV0780 ERR1439583 PHESPV0794 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439583 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439583 22e241ffa85aaf2889ac06d6a5eecc60;5ee5914d33948826ab94ba4d3bb3eab6 1313 96954905 dedb7316a396961211ff7cfea617b98a;7d4d5871a3d7aaa82f46aacfa0ac8211 SAMEA4023852 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439583/ERR1439583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439583/ERR1439583_2.fastq.gz 1062345 WGS PHESPV0794 RANDOM 67186851;68300582 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 729cc77e5251adc24c8f0bf03f96e9d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439583/ERR1439583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439583/ERR1439583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439583/PHESPV0794.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439583/PHESPV0794.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439583/ERR1439583_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439583/ERR1439583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439583/PHESPV0794.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439583/PHESPV0794.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64474873;65633842 ERS1194962 ERX1509961 GENOMIC 194550238 2016-06-10 PHESPV0794 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439583/PHESPV0794.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439583/PHESPV0794.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439583 PHESPV0794 ERR1439609 PHESPV0820 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439609 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439609 4a417d4423b52f33d5bcf3420892830e;6740fc9bdba47a28a7270ad9c1b9c0a8 1313 185059489 4fb4ff53c623814c77109808d5df8bb6;0a21b3fca9ade1cb3e37d611a238594d SAMEA4023878 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439609/ERR1439609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439609/ERR1439609_2.fastq.gz 2055740 WGS PHESPV0820 RANDOM 120751960;125296141 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a89cf01fa6bbefebccc40ab1d868fe0f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439609/ERR1439609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439609/ERR1439609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439609/PHESPV0820.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439609/PHESPV0820.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439609/ERR1439609_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439609/ERR1439609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439609/PHESPV0820.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439609/PHESPV0820.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127209569;131700578 ERS1194988 ERX1509987 GENOMIC 406487757 2016-06-10 PHESPV0820 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439609/PHESPV0820.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439609/PHESPV0820.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439609 PHESPV0820 ERR1439901 PHESPV1112 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439901 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439901 8c1f46c687d1c4edf3d4d7bda5ffab39;e99a26403dd2d0d17f3401e959668c45 1313 151746057 221f3371a62cc827ee8e2a3fa597669b;cec21f15c2d46045b63e353017ca32f3 SAMEA4024170 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439901/ERR1439901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439901/ERR1439901_2.fastq.gz 1672509 WGS PHESPV1112 RANDOM 98472803;104030262 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a654292eb1ac22af58515a3f2ae751de ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439901/ERR1439901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439901/ERR1439901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439901/PHESPV1112.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439901/PHESPV1112.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439901/ERR1439901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439901/ERR1439901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439901/PHESPV1112.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439901/PHESPV1112.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103918357;109425429 ERS1195280 ERX1510279 GENOMIC 330811701 2016-06-10 PHESPV1112 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439901/PHESPV1112.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439901/PHESPV1112.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439901 PHESPV1112 ERR1439794 PHESPV1005 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439794 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439794 d5a49be349abadb0c98a27457369335b;3bb33be7f403ab1d1db4928fcf193d7e 1313 138980505 d7a4d2413a4e57b7638fedfa5b4e11e9;65fa0556a5b39fd36e07f469fc02a7fb SAMEA4024063 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439794/ERR1439794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439794/ERR1439794_2.fastq.gz 1559308 WGS PHESPV1005 RANDOM 100565780;100981358 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7de883168031aac5f43be17b29fae367 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439794/ERR1439794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439794/ERR1439794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439794/PHESPV1005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439794/PHESPV1005.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439794/ERR1439794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439794/ERR1439794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439794/PHESPV1005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439794/PHESPV1005.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96511954;96946449 ERS1195173 ERX1510172 GENOMIC 297228470 2016-06-10 PHESPV1005 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439794/PHESPV1005.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439794/PHESPV1005.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439794 PHESPV1005 ERR1439907 PHESPV1118 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439907 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439907 be8a5f491cff734e57a20bd245705b4a;3dcf511dbd68e0827562a9bc7adac78e 1313 142931972 76ce1964790c7122a3affadfac4f2260;9dd5bdbd4df1fb73a9deb1cc652e9653 SAMEA4024176 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439907/ERR1439907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439907/ERR1439907_2.fastq.gz 1598500 WGS PHESPV1118 RANDOM 95404348;96845341 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e2e874e33634fa62486954986e79fcc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439907/ERR1439907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439907/ERR1439907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439907/PHESPV1118.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439907/PHESPV1118.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439907/ERR1439907_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439907/ERR1439907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439907/PHESPV1118.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439907/PHESPV1118.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100665519;102108671 ERS1195286 ERX1510285 GENOMIC 316977518 2016-06-10 PHESPV1118 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439907/PHESPV1118.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439907/PHESPV1118.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439907 PHESPV1118 ERR1439916 PHESPV1127 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439916 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439916 7dd9d05c46c803f86e2518f0c5f0a33d;ad72f8d355f58604c767ec5a34d4805c 1313 119955208 f3bb6988d0cd6917b9763487aaf7e038;7c08c89858c62407bce89f4475b253fc SAMEA4024185 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439916/ERR1439916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439916/ERR1439916_2.fastq.gz 1432789 WGS PHESPV1127 RANDOM 80322203;83475077 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a7fac931427781ac2154b7b470c6e8d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439916/ERR1439916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439916/ERR1439916_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439916/PHESPV1127.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439916/PHESPV1127.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439916/ERR1439916_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439916/ERR1439916_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439916/PHESPV1127.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439916/PHESPV1127.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85085155;88220829 ERS1195295 ERX1510294 GENOMIC 284843352 2016-06-10 PHESPV1127 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439916/PHESPV1127.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439916/PHESPV1127.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439916 PHESPV1127 ERR1439926 PHESPV1137 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439926 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439926 05fa908d52e053af32e7ce616b7019ea;9b280ba7a97e203702d8b844596e8396 1313 125541097 09a1a534a3e5b75bb4d6ec4f1311d069;5dcb4185daf5b2874c118289c9fa36fd SAMEA4024195 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439926/ERR1439926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439926/ERR1439926_2.fastq.gz 1495243 WGS PHESPV1137 RANDOM 84164816;86586864 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b026c6efefc3ddfccd7b59ea92de370 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439926/ERR1439926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439926/ERR1439926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439926/PHESPV1137.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439926/PHESPV1137.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439926/ERR1439926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439926/ERR1439926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439926/PHESPV1137.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439926/PHESPV1137.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89107281;91513056 ERS1195305 ERX1510304 GENOMIC 297162730 2016-06-10 PHESPV1137 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439926/PHESPV1137.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439926/PHESPV1137.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439926 PHESPV1137 ERR1439978 PHESPV1189 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439978 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439978 d18b2e1f04f4a5f96729afa525a20438;b99e7902ef3e86cbab521f83b252df41 1313 121893151 f2eee94d174741e54bc4eb8772809a41;20f8cd77d242532741f3e7dedf099e33 SAMEA4024247 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439978/ERR1439978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439978/ERR1439978_2.fastq.gz 1386697 WGS PHESPV1189 RANDOM 79827987;84864786 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 079db8660be8f1943e0510581acc1c49 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439978/ERR1439978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439978/ERR1439978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439978/PHESPV1189.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439978/PHESPV1189.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439978/ERR1439978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439978/ERR1439978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439978/PHESPV1189.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439978/PHESPV1189.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84444037;89386800 ERS1195357 ERX1510356 GENOMIC 274897504 2016-06-10 PHESPV1189 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439978/PHESPV1189.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439978/PHESPV1189.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439978 PHESPV1189 ERR1439952 PHESPV1163 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439952 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439952 ae0d9117959ba1b619931580bc4cc6d8;3293467d48c9a3bcf6f772c15ce6bb90 1313 129148789 c07f5a21f4f19e7df6421b540e9e9d40;b2062f4e31c0c35a4fcda411dd8e91d9 SAMEA4024221 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439952/ERR1439952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439952/ERR1439952_2.fastq.gz 1451743 WGS PHESPV1163 RANDOM 86471158;88268292 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5bd6f4c3ac7475c70d8de225f32f0545 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439952/ERR1439952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439952/ERR1439952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439952/PHESPV1163.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439952/PHESPV1163.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439952/ERR1439952_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439952/ERR1439952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439952/PHESPV1163.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439952/PHESPV1163.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91330895;93113038 ERS1195331 ERX1510330 GENOMIC 288291233 2016-06-10 PHESPV1163 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439952/PHESPV1163.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439952/PHESPV1163.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439952 PHESPV1163 ERR1439981 PHESPV1192 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439981 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439981 2dc031bbf28cd4c9e6d9cb8329c64844;9165ae83137e7e374c799d929f27b9f3 1313 109069233 075706841468668e5677796b566fd58f;707e8fd05c6b2d26f55993b356518d8f SAMEA4024250 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439981/ERR1439981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439981/ERR1439981_2.fastq.gz 1234338 WGS PHESPV1192 RANDOM 72054215;75307500 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 29cefa3caeab7ea2d01cd5606722acb7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439981/ERR1439981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439981/ERR1439981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439981/PHESPV1192.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439981/PHESPV1192.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439981/ERR1439981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439981/ERR1439981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439981/PHESPV1192.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439981/PHESPV1192.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76238032;79420367 ERS1195360 ERX1510359 GENOMIC 244953211 2016-06-10 PHESPV1192 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439981/PHESPV1192.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439981/PHESPV1192.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439981 PHESPV1192 ERR1440004 PHESPV1215 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440004 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440004 662a0fdb48724739b4e8ad45b3a02976;6c8863cb6af1af38b5f2764c07a8cea4 1313 109598380 c46d1654d4f513042c38421ede68b40a;73e01382fdce338c06f3b33223ffed3f SAMEA4024273 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440004/ERR1440004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440004/ERR1440004_2.fastq.gz 1242671 WGS PHESPV1215 RANDOM 71899099;76271416 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bad218238a4741905cd046bd2cf24b4b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440004/ERR1440004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440004/ERR1440004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440004/PHESPV1215.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440004/PHESPV1215.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440004/ERR1440004_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440004/ERR1440004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440004/PHESPV1215.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440004/PHESPV1215.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76089893;80377374 ERS1195383 ERX1510382 GENOMIC 246405888 2016-06-10 PHESPV1215 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440004/PHESPV1215.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440004/PHESPV1215.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440004 PHESPV1215 ERR1440048 PHESPV1259 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440048 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440048 629fd76d71a4f283e95aea7f9484c65a;23c170151a6c0fade2def0755261df1b 1313 175846383 d317066b23ae0fb24ba72489987b7538;8f316aeab8b69b74cd475e73bf8a269e SAMEA4024317 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440048/ERR1440048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440048/ERR1440048_2.fastq.gz 1937956 WGS PHESPV1259 RANDOM 117726627;120197987 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50db74b980951ef457eb5c949b3c051c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440048/ERR1440048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440048/ERR1440048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440048/PHESPV1259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440048/PHESPV1259.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440048/ERR1440048_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440048/ERR1440048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440048/PHESPV1259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440048/PHESPV1259.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123968867;126424189 ERS1195427 ERX1510426 GENOMIC 384014076 2016-06-10 PHESPV1259 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440048/PHESPV1259.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440048/PHESPV1259.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440048 PHESPV1259 ERR1440035 PHESPV1246 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440035 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440035 021c387dba75d8fa2dc47c8500ebbce0;2f1b2d53cc17f3bfd292c08009f4ca60 1313 113300610 8b969eb161c05b93eeaef89d09c5a4a8;6d69f1a7a255f902066de9583e5c38f3 SAMEA4024304 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440035/ERR1440035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440035/ERR1440035_2.fastq.gz 1250404 WGS PHESPV1246 RANDOM 75765721;77160827 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e150cccf8dcb4c12e9b29d1a4ecfcaf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440035/ERR1440035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440035/ERR1440035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440035/PHESPV1246.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440035/PHESPV1246.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440035/ERR1440035_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440035/ERR1440035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440035/PHESPV1246.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440035/PHESPV1246.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80010370;81365295 ERS1195414 ERX1510413 GENOMIC 247608975 2016-06-10 PHESPV1246 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440035/PHESPV1246.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440035/PHESPV1246.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440035 PHESPV1246 ERR1440052 PHESPV1263 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440052 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440052 273ef83f7b236d4a43f77014ae5fb236;7fb8f8aad09b6b18615a86a0a04c7cab 1313 133199556 d0c9b6a6afb3651ed570701bbe568bcf;e9c50997bc0e21f1ce619b887b76cdd8 SAMEA4024321 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440052/ERR1440052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440052/ERR1440052_2.fastq.gz 1450799 WGS PHESPV1263 RANDOM 87312457;92272349 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eb0f628edec4ecdf165d1d080e8e4211 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440052/ERR1440052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440052/ERR1440052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440052/PHESPV1263.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440052/PHESPV1263.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440052/ERR1440052_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440052/ERR1440052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440052/PHESPV1263.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440052/PHESPV1263.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92135746;97006421 ERS1195431 ERX1510430 GENOMIC 286687413 2016-06-10 PHESPV1263 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440052/PHESPV1263.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440052/PHESPV1263.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440052 PHESPV1263 ERR1440061 PHESPV1272 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440061 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440061 dfff26d72df288382eb1f66bb30c196b;2878a4e416b78fe9b5a08428c20dd167 1313 143083112 9ce2011508a66c9bf72d25591481eec7;ba8de68e2a6f1ee116640baa9b059de6 SAMEA4024330 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440061/ERR1440061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440061/ERR1440061_2.fastq.gz 1640114 WGS PHESPV1272 RANDOM 94914844;98790633 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2feb6f17fae920b8ca194b716d3f5107 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440061/ERR1440061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440061/ERR1440061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440061/PHESPV1272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440061/PHESPV1272.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440061/ERR1440061_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440061/ERR1440061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440061/PHESPV1272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440061/PHESPV1272.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100276495;104112392 ERS1195440 ERX1510439 GENOMIC 325678461 2016-06-10 PHESPV1272 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440061/PHESPV1272.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440061/PHESPV1272.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440061 PHESPV1272 ERR1440070 PHESPV1281 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440070 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440070 4b8f1394db46e2c6428f01fd73001231;47358999a1f4be47b19bd4f6bde27b9e 1313 129111318 c1b513a7ec1213f3c900de9c72d8bd76;7cb9ce77fe3605ff7b797ef1c5a85763 SAMEA4024339 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440070/ERR1440070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440070/ERR1440070_2.fastq.gz 1479325 WGS PHESPV1281 RANDOM 85938295;88869969 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b43f3afa6c710363e70098d5c14bf12c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440070/ERR1440070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440070/ERR1440070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440070/PHESPV1281.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440070/PHESPV1281.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440070/ERR1440070_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440070/ERR1440070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440070/PHESPV1281.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440070/PHESPV1281.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90822247;93718189 ERS1195449 ERX1510448 GENOMIC 293693385 2016-06-10 PHESPV1281 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440070/PHESPV1281.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440070/PHESPV1281.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440070 PHESPV1281 ERR1440072 PHESPV1283 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440072 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440072 23aaf67dd20520d630e7b39b7fae5ea3;0fa436f678a7725641fc41e2c182f793 1313 116070081 c88c5a3e18798e563614b19fc9509f2a;2c070a2a5c9c6d4af670dbfddcf6160c SAMEA4024341 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440072/ERR1440072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440072/ERR1440072_2.fastq.gz 1329804 WGS PHESPV1283 RANDOM 77392545;79704729 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 864fae5b7acdde321e5c633e5d0da599 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440072/ERR1440072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440072/ERR1440072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440072/PHESPV1283.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440072/PHESPV1283.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440072/ERR1440072_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440072/ERR1440072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440072/PHESPV1283.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440072/PHESPV1283.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81801233;84085215 ERS1195451 ERX1510450 GENOMIC 264199200 2016-06-10 PHESPV1283 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440072/PHESPV1283.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440072/PHESPV1283.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440072 PHESPV1283 ERR1440001 PHESPV1212 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440001 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440001 7333eef5703b8360b99bb873095bc586;5a6c196c2b5611266331e34d729ff2f2 1313 129681358 148f7ce3c979b3a1ec111f466ceddd52;7e8a0722464b9cf6d0f4664b87542e24 SAMEA4024270 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440001/ERR1440001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440001/ERR1440001_2.fastq.gz 1483184 WGS PHESPV1212 RANDOM 85885027;89724484 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c9c1d098d72f5d10e03831150dc7715 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440001/ERR1440001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440001/ERR1440001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440001/PHESPV1212.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440001/PHESPV1212.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440001/ERR1440001_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440001/ERR1440001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440001/PHESPV1212.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440001/PHESPV1212.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90790931;94562239 ERS1195380 ERX1510379 GENOMIC 294408423 2016-06-10 PHESPV1212 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440001/PHESPV1212.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440001/PHESPV1212.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440001 PHESPV1212 ERR1440126 PHESPV1338 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440126 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440126 53f95dcd61aa9a10fbe010525a73d81a;7b44e52b673f77d4ccb18ae3c2296c2e 1313 103774334 210a636edd36543da3150b6dc48bedbd;e1b4d8a136af765141d14d30315f256f SAMEA4024395 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440126/ERR1440126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440126/ERR1440126_2.fastq.gz 1168317 WGS PHESPV1338 RANDOM 68908501;71712460 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dfe4ceaa0c685bb3f4e957acfc78ba72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440126/ERR1440126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440126/ERR1440126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440126/PHESPV1338.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440126/PHESPV1338.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440126/ERR1440126_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440126/ERR1440126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440126/PHESPV1338.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440126/PHESPV1338.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72948967;75672155 ERS1195505 ERX1510504 GENOMIC 231904381 2016-06-10 PHESPV1338 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440126/PHESPV1338.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440126/PHESPV1338.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440126 PHESPV1338 ERR1440159 PHESPV1372 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440159 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440159 5419ee899f08352e8a6472c15d05005f;8c35bdb5fa42e0caf94464ab10b1a74f 1313 151174022 a733803111440c946caf9f634038d155;316da13869cd21deeb86f1762084b156 SAMEA4024428 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440159/ERR1440159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440159/ERR1440159_2.fastq.gz 1721287 WGS PHESPV1372 RANDOM 100592736;104530411 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 46f8bf90b7c34361c31366464c4af510 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440159/ERR1440159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440159/ERR1440159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440159/PHESPV1372.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440159/PHESPV1372.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440159/ERR1440159_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440159/ERR1440159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440159/PHESPV1372.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440159/PHESPV1372.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106262932;110084733 ERS1195538 ERX1510537 GENOMIC 341869738 2016-06-10 PHESPV1372 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440159/PHESPV1372.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440159/PHESPV1372.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440159 PHESPV1372 ERR1440230 PHESPV1444 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440230 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440230 b3f76c4abfecee38174b6b086248779b;4c5e6a36774ceb6d98515a650d7cca46 1313 188211389 3d7044b5e17e717ef082bb6f9e14bfc5;3e388e716c3d86f60fdbb9a1924f2b3c SAMEA4024499 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440230/ERR1440230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440230/ERR1440230_2.fastq.gz 2193547 WGS PHESPV1444 RANDOM 122096725;133726505 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 58146781e0d32d59b356d6f5d1f53df1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440230/ERR1440230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440230/ERR1440230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440230/PHESPV1444.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440230/PHESPV1444.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440230/ERR1440230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440230/ERR1440230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440230/PHESPV1444.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440230/PHESPV1444.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128996388;140492092 ERS1195609 ERX1510608 GENOMIC 434490452 2016-06-10 PHESPV1444 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440230/PHESPV1444.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440230/PHESPV1444.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440230 PHESPV1444 ERR1440236 PHESPV1450 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440236 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440236 6d37fba9c111da16d88124afdb8678d9;c290cf1d846d3332372676fdd4b33d50 1313 180846850 91f33666aafbcf7ce50b44104bb7fb03;d288774849a584f8ab3ff42d92ee2e41 SAMEA4024505 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440236/ERR1440236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440236/ERR1440236_2.fastq.gz 2159075 WGS PHESPV1450 RANDOM 120451816;127035125 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0bc5268c057fd7d467e3d3a89bb01014 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440236/ERR1440236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440236/ERR1440236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440236/PHESPV1450.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440236/PHESPV1450.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440236/ERR1440236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440236/ERR1440236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440236/PHESPV1450.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440236/PHESPV1450.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127236017;133746139 ERS1195615 ERX1510614 GENOMIC 428565779 2016-06-10 PHESPV1450 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440236/PHESPV1450.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440236/PHESPV1450.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440236 PHESPV1450 ERR1440240 PHESPV1454 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440240 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440240 16b3af56eaa6579aeeff01dcd5513fc9;3b60b6a7a510235fabbf17878b80ac27 1313 178945453 41be2da51fc0305f41bbbd97d89011bd;875384e309322c41273525a729f7aa6e SAMEA4024509 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440240/ERR1440240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440240/ERR1440240_2.fastq.gz 2127378 WGS PHESPV1454 RANDOM 117879961;126141151 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7d0a51031a9571de1f16d8861e6f37e5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440240/ERR1440240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440240/ERR1440240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440240/PHESPV1454.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440240/PHESPV1454.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440240/ERR1440240_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440240/ERR1440240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440240/PHESPV1454.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440240/PHESPV1454.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124599593;132758814 ERS1195619 ERX1510618 GENOMIC 421982423 2016-06-10 PHESPV1454 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440240/PHESPV1454.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440240/PHESPV1454.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440240 PHESPV1454 ERR1440255 PHESPV1470 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440255 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440255 29f5e6e5cacf24cd406b9d43e7c4bec7;34166e058f408d3cba740f545e56daef 1313 165847986 55fa677775b52b38e771a290a9d1e60b;842beff45b0ca38b3b9c14f05abb8269 SAMEA4024524 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440255/ERR1440255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440255/ERR1440255_2.fastq.gz 1999828 WGS PHESPV1470 RANDOM 112397271;115261566 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dcc27426d25220c14e9b263fc45739bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440255/ERR1440255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440255/ERR1440255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440255/PHESPV1470.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440255/PHESPV1470.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440255/ERR1440255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440255/ERR1440255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440255/PHESPV1470.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440255/PHESPV1470.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118768415;121629108 ERS1195634 ERX1510633 GENOMIC 397380077 2016-06-10 PHESPV1470 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440255/PHESPV1470.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440255/PHESPV1470.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440255 PHESPV1470 ERR1440265 PHESPV1480 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440265 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440265 a4801f4f234d15c2b39ec13a0d253bab;489f4d0722a08231ff0178de3a3be559 1313 145283045 271ab391ea38673f285087d8c3e897b0;fe29105a52fb3c4a7c8638074c574eb6 SAMEA4024534 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440265/ERR1440265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440265/ERR1440265_2.fastq.gz 1753679 WGS PHESPV1480 RANDOM 98079490;101404194 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9854ca477cded7d4e79f35f3d4ccc0b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440265/ERR1440265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440265/ERR1440265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440265/PHESPV1480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440265/PHESPV1480.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440265/ERR1440265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440265/ERR1440265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440265/PHESPV1480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440265/PHESPV1480.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103786569;107104966 ERS1195644 ERX1510643 GENOMIC 348461915 2016-06-10 PHESPV1480 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440265/PHESPV1480.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440265/PHESPV1480.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440265 PHESPV1480 ERR1440270 PHESPV1485 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440270 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440270 e49ba6f2d082ad78d417136ecd6077a2;5c791ff8eb7f78c639024f2c3b3db012 1313 224173079 4ef3a3bf563a2e081187b6e6d74ca3cd;083245234501e5002e389a61ff58e879 SAMEA4024539 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440270/ERR1440270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440270/ERR1440270_2.fastq.gz 2652144 WGS PHESPV1485 RANDOM 147625192;158325592 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 71b3838c18079c7539829b4f6317f5ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440270/ERR1440270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440270/ERR1440270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440270/PHESPV1485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440270/PHESPV1485.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440270/ERR1440270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440270/ERR1440270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440270/PHESPV1485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440270/PHESPV1485.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 155719591;166371121 ERS1195649 ERX1510648 GENOMIC 525958067 2016-06-10 PHESPV1485 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440270/PHESPV1485.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440270/PHESPV1485.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440270 PHESPV1485 ERR1440299 PHESPV1514 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440299 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440299 821bfc1b89e6e395a0ac9cd2814a2c32;87f1134dbbe21dc271436c594bed9293 1313 151514010 e7ac7950d214ef4c7afd4a1ec0277ef3;e7f75fb71c80ab019780ff29682636b7 SAMEA4024568 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440299/ERR1440299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440299/ERR1440299_2.fastq.gz 1817945 WGS PHESPV1514 RANDOM 102642183;105032088 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 620026cd70ef0e6c6e96d44442bbb178 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440299/ERR1440299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440299/ERR1440299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440299/PHESPV1514.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440299/PHESPV1514.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440299/ERR1440299_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440299/ERR1440299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440299/PHESPV1514.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440299/PHESPV1514.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108516760;110910931 ERS1195678 ERX1510677 GENOMIC 361202260 2016-06-10 PHESPV1514 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440299/PHESPV1514.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440299/PHESPV1514.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440299 PHESPV1514 ERR1440553 PHESPV1768 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440553 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440553 bd7c02cde8430a351df9cd5384680f9c;a33d1ba6981cd8f62f5d83fed56cbf56 1313 112728316 497debb988abd3d191583a5b8c3a4f1a;d3d711ed9162b217bcb170daabbbd361 SAMEA4024822 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440553/ERR1440553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440553/ERR1440553_2.fastq.gz 1308811 WGS PHESPV1768 RANDOM 81931182;84151789 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d442aab40afb48fea937b993071e64a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440553/ERR1440553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440553/ERR1440553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440553/PHESPV1768.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440553/PHESPV1768.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440553/ERR1440553_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440553/ERR1440553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440553/PHESPV1768.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440553/PHESPV1768.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78732754;80890164 ERS1195932 ERX1510931 GENOMIC 258678487 2016-06-10 PHESPV1768 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440553/PHESPV1768.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440553/PHESPV1768.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440553 PHESPV1768 ERR1440557 PHESPV1772 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440557 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440557 406354582f9d8596bdd793fe8e11fc8f;35367ae13b49cbcc6bd117e961195760 1313 164917936 07a7f5a59247c10f331af8a956bb4490;ea88d89db56f1a191aed5ae09d02dea0 SAMEA4024826 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440557/ERR1440557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440557/ERR1440557_2.fastq.gz 1931032 WGS PHESPV1772 RANDOM 121592698;121779973 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 838e061b268899283ff8868e50d7a55f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440557/ERR1440557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440557/ERR1440557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440557/PHESPV1772.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440557/PHESPV1772.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440557/ERR1440557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440557/ERR1440557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440557/PHESPV1772.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440557/PHESPV1772.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116666350;116803415 ERS1195936 ERX1510935 GENOMIC 381750984 2016-06-10 PHESPV1772 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440557/PHESPV1772.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440557/PHESPV1772.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440557 PHESPV1772 ERR1440556 PHESPV1771 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440556 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440556 46bceb655d4fc18c0953bce2d9cc1d86;78620c5d767df253700ffa76eb026aee 1313 130886722 f82d3ce9e83e73a071899b67b44eb40a;ba888936cc085d0ee299adf5b991e3f8 SAMEA4024825 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440556/ERR1440556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440556/ERR1440556_2.fastq.gz 1534891 WGS PHESPV1771 RANDOM 95967001;97362862 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6df1caa251da2381b3bbcaf822da8503 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440556/ERR1440556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440556/ERR1440556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440556/PHESPV1771.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440556/PHESPV1771.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440556/ERR1440556_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440556/ERR1440556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440556/PHESPV1771.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440556/PHESPV1771.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92127901;93466130 ERS1195935 ERX1510934 GENOMIC 303212147 2016-06-10 PHESPV1771 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440556/PHESPV1771.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440556/PHESPV1771.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440556 PHESPV1771 ERR1440574 PHESPV1789 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440574 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440574 8cfc854503294e1e2de4d2f58c1ce85f;5de108068fca23f5c7997c4b33991355 1313 133990768 669d2d0787f4152da881487d89715a8f;fdc43180825e268569eb032a52b466f7 SAMEA4024843 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440574/ERR1440574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440574/ERR1440574_2.fastq.gz 1558687 WGS PHESPV1789 RANDOM 96833579;100364189 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 85fabe8bf9119d0b511db761f2b3e328 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440574/ERR1440574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440574/ERR1440574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440574/PHESPV1789.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440574/PHESPV1789.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440574/ERR1440574_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440574/ERR1440574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440574/PHESPV1789.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440574/PHESPV1789.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92921516;96367064 ERS1195953 ERX1510952 GENOMIC 306234421 2016-06-10 PHESPV1789 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440574/PHESPV1789.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440574/PHESPV1789.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440574 PHESPV1789 ERR1440560 PHESPV1775 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440560 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440560 a79fa615b598146d30af65d85fb3e6d8;18ff210593c57103ffffb5ae3ed25e75 1313 161386748 1336afc862e11008aa0062bd59e19e46;e430fb29c6462a532ef38067d4dc9087 SAMEA4024829 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440560/ERR1440560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440560/ERR1440560_2.fastq.gz 1906617 WGS PHESPV1775 RANDOM 118331009;120146925 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a03a4ecc35ef4d51bb1c875d27418a26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440560/ERR1440560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440560/ERR1440560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440560/PHESPV1775.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440560/PHESPV1775.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440560/ERR1440560_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440560/ERR1440560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440560/PHESPV1775.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440560/PHESPV1775.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113429989;115188820 ERS1195939 ERX1510938 GENOMIC 376435401 2016-06-10 PHESPV1775 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440560/PHESPV1775.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440560/PHESPV1775.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440560 PHESPV1775 ERR1440577 PHESPV1792 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440577 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440577 f68a1819192cd5f21b0ada2954c44338;652dad7a51112a5650848699b17febe8 1313 114662204 1cae42b4436726ad3389d78970ee7a23;042772a56917158b9f4fc74b0c5b91d6 SAMEA4024846 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440577/ERR1440577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440577/ERR1440577_2.fastq.gz 1328102 WGS PHESPV1792 RANDOM 82699175;86074247 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4d306ea95cfdc914cd2f589b59271272 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440577/ERR1440577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440577/ERR1440577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440577/PHESPV1792.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440577/PHESPV1792.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440577/ERR1440577_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440577/ERR1440577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440577/PHESPV1792.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440577/PHESPV1792.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79477603;82781210 ERS1195956 ERX1510955 GENOMIC 262487753 2016-06-10 PHESPV1792 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440577/PHESPV1792.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440577/PHESPV1792.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440577 PHESPV1792 ERR1440585 PHESPV1800 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440585 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440585 e5800f95c0380f0e9a5b207f3e462138;fea47b1f4362861812400428bb5f2070 1313 177989954 f612c3f317972b622e400813fdaf49d3;d66e9b9f7bcd0b50419164926ba4c6d5 SAMEA4024854 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440585/ERR1440585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440585/ERR1440585_2.fastq.gz 2090663 WGS PHESPV1800 RANDOM 128164706;133674145 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac0ed7b14ed16570dfe26b7999469bd3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440585/ERR1440585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440585/ERR1440585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440585/PHESPV1800.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440585/PHESPV1800.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440585/ERR1440585_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440585/ERR1440585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440585/PHESPV1800.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440585/PHESPV1800.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122817925;128288879 ERS1195964 ERX1510963 GENOMIC 410808339 2016-06-10 PHESPV1800 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440585/PHESPV1800.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440585/PHESPV1800.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440585 PHESPV1800 ERR1440586 PHESPV1801 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440586 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440586 2462b42eade52d398ecc01e749bd252e;54e11136c8d8af03af0301ddb9b13e6f 1313 187404771 c4823d856eb9f058157078d9deaf6e45;bd8d043143bcc40704ec1a8d8e4bcffb SAMEA4024855 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440586/ERR1440586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440586/ERR1440586_2.fastq.gz 2204153 WGS PHESPV1801 RANDOM 136445030;139508285 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0af56058e9a87c08bacb856d17011aac ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440586/ERR1440586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440586/ERR1440586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440586/PHESPV1801.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440586/PHESPV1801.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440586/ERR1440586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440586/ERR1440586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440586/PHESPV1801.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440586/PHESPV1801.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130894649;133933127 ERS1195965 ERX1510964 GENOMIC 434654378 2016-06-10 PHESPV1801 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440586/PHESPV1801.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440586/PHESPV1801.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440586 PHESPV1801 ERR1440790 PHESPV2005 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440790 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440790 43163b90eb4a2ca33c579e538ac3983b;e7f3c28b9afb90593dfabcc3e6665f21 1313 130106559 3ce1786fdbfb8f4d0b57f9652d9cc123;6a6a75028a32ac96c39a8975fa18b0b0 SAMEA4025059 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440790/ERR1440790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440790/ERR1440790_2.fastq.gz 1393627 WGS PHESPV2005 RANDOM 92144217;95282593 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 514b976760286dd8a4df301f0c24abce ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440790/ERR1440790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440790/ERR1440790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440790/PHESPV2005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440790/PHESPV2005.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440790/ERR1440790_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440790/ERR1440790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440790/PHESPV2005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440790/PHESPV2005.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88600055;91723413 ERS1196169 ERX1511168 GENOMIC 271543719 2016-06-10 PHESPV2005 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440790/PHESPV2005.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440790/PHESPV2005.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440790 PHESPV2005 ERR1440792 PHESPV2007 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440792 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440792 d55858565301f7c2499b3a11a0b34d92;a56be6303f5f6126390827c5b5d4d16e 1313 153752689 9f2f77152e419a05b5c84b90044fb9b1;3fca4341de63feb9befee4306f06ce7f SAMEA4025061 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440792/ERR1440792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440792/ERR1440792_2.fastq.gz 1671925 WGS PHESPV2007 RANDOM 111049905;111564896 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4609d1dbe62bd76e2cf75e5345e43ddf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440792/ERR1440792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440792/ERR1440792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440792/PHESPV2007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440792/PHESPV2007.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440792/ERR1440792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440792/ERR1440792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440792/PHESPV2007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440792/PHESPV2007.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106688218;107209605 ERS1196171 ERX1511170 GENOMIC 327259333 2016-06-10 PHESPV2007 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440792/PHESPV2007.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440792/PHESPV2007.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440792 PHESPV2007 ERR1440813 PHESPV2028 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440813 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440813 f655d1bb95327ae5153856bf4ae3b1ae;8fe8a2db18548756e68075f364c148ca 1313 157531931 5803833b5be114f8edce77bf33f100d8;2b5a6e86d5f5b67824bd7ee8b57cef86 SAMEA4025082 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440813/ERR1440813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440813/ERR1440813_2.fastq.gz 1715579 WGS PHESPV2028 RANDOM 113512510;114574472 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 89e64625a17f28211e61e52fa203fa65 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440813/ERR1440813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440813/ERR1440813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440813/PHESPV2028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440813/PHESPV2028.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440813/ERR1440813_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440813/ERR1440813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440813/PHESPV2028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440813/PHESPV2028.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108996003;110062383 ERS1196192 ERX1511191 GENOMIC 335119996 2016-06-10 PHESPV2028 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440813/PHESPV2028.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440813/PHESPV2028.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440813 PHESPV2028 ERR1440820 PHESPV2035 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440820 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440820 a329b449a5af4b966d9c1c89080088ef;cbc0531e81bbf867b36c5e8b5923a047 1313 168700490 dbe46d75bafb6645f054a12ae4558c56;df72a46770eb8859947b523c91c05d4c SAMEA4025089 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440820/ERR1440820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440820/ERR1440820_2.fastq.gz 1841312 WGS PHESPV2035 RANDOM 121763124;122517580 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2783f2841583568cf608888c499a9e3b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440820/ERR1440820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440820/ERR1440820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440820/PHESPV2035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440820/PHESPV2035.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440820/ERR1440820_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440820/ERR1440820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440820/PHESPV2035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440820/PHESPV2035.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116937948;117701657 ERS1196199 ERX1511198 GENOMIC 359884056 2016-06-10 PHESPV2035 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440820/PHESPV2035.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440820/PHESPV2035.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440820 PHESPV2035 ERR1440824 PHESPV2039 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440824 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440824 5650839e4653c6e036c237ac22d6bfd2;46c135f341d278512efab5a9b312ae7d 1313 182410734 fb78474c0cf2198c22eca291ee98ddc7;a5d81fda06b611f9e6fce32f59e1cda7 SAMEA4025093 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440824/ERR1440824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440824/ERR1440824_2.fastq.gz 1955124 WGS PHESPV2039 RANDOM 128670883;133855026 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9aee4690211ce5b49ad28535cefadef0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440824/ERR1440824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440824/ERR1440824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440824/PHESPV2039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440824/PHESPV2039.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440824/ERR1440824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440824/ERR1440824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440824/PHESPV2039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440824/PHESPV2039.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123592397;128753272 ERS1196203 ERX1511202 GENOMIC 380685889 2016-06-10 PHESPV2039 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440824/PHESPV2039.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440824/PHESPV2039.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440824 PHESPV2039 ERR1440827 PHESPV2042 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440827 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440827 1a7b6bcc8aabe0eb1ec7b597e775444b;7ad8bf235cdc26d16427854b71fa9754 1313 161507903 0efcd12c86b005dcf21898d064e0f8db;7bcca2ccc4affe87a7040cf2098f9161 SAMEA4025096 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440827/ERR1440827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440827/ERR1440827_2.fastq.gz 1766297 WGS PHESPV2042 RANDOM 116013407;118088717 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f68f639f572699ccef0e9ab8451d500d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440827/ERR1440827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440827/ERR1440827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440827/PHESPV2042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440827/PHESPV2042.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440827/ERR1440827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440827/ERR1440827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440827/PHESPV2042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440827/PHESPV2042.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111396626;113475540 ERS1196206 ERX1511205 GENOMIC 345871473 2016-06-10 PHESPV2042 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440827/PHESPV2042.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440827/PHESPV2042.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440827 PHESPV2042 ERR1440834 PHESPV2049 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440834 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440834 ce5d22ae964a7ac618800a1040e55bb1;a0efb8f9b8fefad0420cfff03e8cf2bd 1313 171822555 2d55d03606ebfcb20118ce5b9e0c65e5;131fb98b642663feb0e2f351a69a3c90 SAMEA4025103 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440834/ERR1440834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440834/ERR1440834_2.fastq.gz 1897678 WGS PHESPV2049 RANDOM 124099404;124694865 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8c2cc160746fa87e37bbb373e8dd9d9c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440834/ERR1440834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440834/ERR1440834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440834/PHESPV2049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440834/PHESPV2049.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440834/ERR1440834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440834/ERR1440834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440834/PHESPV2049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440834/PHESPV2049.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119131054;119739156 ERS1196213 ERX1511212 GENOMIC 366988927 2016-06-10 PHESPV2049 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440834/PHESPV2049.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440834/PHESPV2049.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440834 PHESPV2049 ERR1440837 PHESPV2052 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440837 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440837 ef4ef70e6ed6146d7515bbbf3f134c69;af79d95ae78039b4f1a6eca88cd0797d 1313 146729364 839376ee976f6b9364df8442f3306b53;101293dee32466a1d28f808fb9ceb1f3 SAMEA4025106 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440837/ERR1440837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440837/ERR1440837_2.fastq.gz 1572151 WGS PHESPV2052 RANDOM 104101714;107398877 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8541eccbec7ed6152abf2ef4fa9e0e6b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440837/ERR1440837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440837/ERR1440837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440837/PHESPV2052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440837/PHESPV2052.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440837/ERR1440837_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440837/ERR1440837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440837/PHESPV2052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440837/PHESPV2052.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100034689;103320318 ERS1196216 ERX1511215 GENOMIC 306257119 2016-06-10 PHESPV2052 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440837/PHESPV2052.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440837/PHESPV2052.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440837 PHESPV2052 ERR1440847 PHESPV2062 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440847 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440847 510794a2231255a194200569c17f753f;1c93c53740c4f978a1f90fab04870a80 1313 144879156 1b83dd9a6d6e79f32e8a64d2cb70919a;c1beacc3c820bb5070c8c4293a3c0b61 SAMEA4025116 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440847/ERR1440847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440847/ERR1440847_2.fastq.gz 1584645 WGS PHESPV2062 RANDOM 104485474;105405660 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 47bf7fdbc5a6f26ac2680a6b8f522702 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440847/ERR1440847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440847/ERR1440847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440847/PHESPV2062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440847/PHESPV2062.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440847/ERR1440847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440847/ERR1440847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440847/PHESPV2062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440847/PHESPV2062.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100375765;101303747 ERS1196226 ERX1511225 GENOMIC 308722371 2016-06-10 PHESPV2062 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440847/PHESPV2062.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440847/PHESPV2062.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440847 PHESPV2062 ERR1439004 PHESPV0215 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439004 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439004 3f6e5e4c334998573bb1d06a3cb32c28;77c5d47df8a91c77ac03c0971d9ae440 1313 113257806 46179922674dcad68a7b05212fe24f2c;1ea70ed2a1004da4f21dd4a301f93ad9 SAMEA4023273 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439004/ERR1439004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439004/ERR1439004_2.fastq.gz 1408595 WGS PHESPV0215 RANDOM 75923932;79413152 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6abcdd6d952c644a7fc4909a2e0bce0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439004/ERR1439004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439004/ERR1439004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439004/PHESPV0215.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439004/PHESPV0215.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439004/ERR1439004_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439004/ERR1439004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439004/PHESPV0215.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439004/PHESPV0215.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80665415;84108473 ERS1194383 ERX1509382 GENOMIC 275846514 2016-06-10 PHESPV0215 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439004/PHESPV0215.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439004/PHESPV0215.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439004 PHESPV0215 ERR1438918 PHESPV0128 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438918 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438918 e991d9336bd39392c54d1fc354f22d43;0dda079f8d7447b954a2ed9883c62e80 1313 141065984 573d9cff05301ccc0f7f1d347e21f5a6;dd63d55d30b8ac3bf22f69a04451c907 SAMEA4023187 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438918/ERR1438918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438918/ERR1438918_2.fastq.gz 1576093 WGS PHESPV0128 RANDOM 94186885;96782347 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 273dbd0e38cce2e63b2fa4d43575ea59 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438918/ERR1438918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438918/ERR1438918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438918/PHESPV0128.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438918/PHESPV0128.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438918/ERR1438918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438918/ERR1438918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438918/PHESPV0128.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438918/PHESPV0128.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99417223;102011150 ERS1194297 ERX1509296 GENOMIC 312750683 2016-06-10 PHESPV0128 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438918/PHESPV0128.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438918/PHESPV0128.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438918 PHESPV0128 ERR1439003 PHESPV0214 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439003 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439003 6555ad0f5e67a48503bbd6dd3bb91b39;6a949315234c84432abf796d5d5c77e6 1313 128682817 7dc8189c9f93cfe188332669dee2fdca;ea3ddcfbe3bf4bc97a22f72adb359861 SAMEA4023272 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439003/ERR1439003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439003/ERR1439003_2.fastq.gz 1609284 WGS PHESPV0214 RANDOM 86251725;89247176 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b458b4dbc516bdd6b5736a737dfc707e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439003/ERR1439003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439003/ERR1439003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439003/PHESPV0214.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439003/PHESPV0214.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439003/ERR1439003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439003/ERR1439003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439003/PHESPV0214.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439003/PHESPV0214.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91567909;94525937 ERS1194382 ERX1509381 GENOMIC 315421020 2016-06-10 PHESPV0214 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439003/PHESPV0214.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439003/PHESPV0214.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439003 PHESPV0214 ERR1438897 PHESPV0107 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438897 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438897 22da68412dcbfbb46e1ecf8c4022dc9e;4ca83c1270710dc30b249484aaf0b32d 1313 176770792 e16a58c55c7a0957d5774f349f26bc3e;c0ca90e1688a790bb7dac27a84f6eba6 SAMEA4023166 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438897/ERR1438897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438897/ERR1438897_2.fastq.gz 1977433 WGS PHESPV0107 RANDOM 118363753;121059538 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4320fb7fdc61f7b2901d8c774b93d349 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438897/ERR1438897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438897/ERR1438897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438897/PHESPV0107.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438897/PHESPV0107.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438897/ERR1438897_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438897/ERR1438897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438897/PHESPV0107.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438897/PHESPV0107.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124710184;127418444 ERS1194276 ERX1509275 GENOMIC 392687992 2016-06-10 PHESPV0107 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438897/PHESPV0107.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438897/PHESPV0107.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438897 PHESPV0107 ERR1439002 PHESPV0213 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439002 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439002 8d1361c1572aa8369e452e29a8a3362a;b1616f8e00c6f7bf41cea6dbfa65af78 1313 100316693 9d09a259cb7184dd12a4a1c984227b2d;c18aa94b9ee71a261696caa2409b5845 SAMEA4023271 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439002/ERR1439002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439002/ERR1439002_2.fastq.gz 1236390 WGS PHESPV0213 RANDOM 66606432;70434266 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 572a23acc65e579819416ccb788dbd03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439002/ERR1439002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439002/ERR1439002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439002/PHESPV0213.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439002/PHESPV0213.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439002/ERR1439002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439002/ERR1439002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439002/PHESPV0213.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439002/PHESPV0213.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70829112;74599117 ERS1194381 ERX1509380 GENOMIC 241618737 2016-06-10 PHESPV0213 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439002/PHESPV0213.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439002/PHESPV0213.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439002 PHESPV0213 ERR1439011 PHESPV0222 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439011 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439011 024862e69bdd72b1034b507c41456dfa;b09ceddb9a3061cc24f7f1e095d90299 1313 116278426 f85107938ba21086d33adef673e14137;64f79d7e7193f2846a9873e100c2bfee SAMEA4023280 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439011/ERR1439011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439011/ERR1439011_2.fastq.gz 1452499 WGS PHESPV0222 RANDOM 78214481;81114775 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8dc6bee799f37e30c5c82d6e139f0c95 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439011/ERR1439011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439011/ERR1439011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439011/PHESPV0222.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439011/PHESPV0222.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439011/ERR1439011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439011/ERR1439011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439011/PHESPV0222.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439011/PHESPV0222.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83083811;85944405 ERS1194390 ERX1509389 GENOMIC 284983281 2016-06-10 PHESPV0222 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439011/PHESPV0222.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439011/PHESPV0222.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439011 PHESPV0222 ERR1439006 PHESPV0217 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439006 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439006 61a29e35f871f7b9de6e8709a7a68130;04da0a9b09328215eba4b9cf82d1848a 1313 124611435 688de08664ebf7870b62dbe5f6e44625;950bed5c8934246fd7a736ebafbf661b SAMEA4023275 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439006/ERR1439006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439006/ERR1439006_2.fastq.gz 1558028 WGS PHESPV0217 RANDOM 83892822;87120181 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e8051ef93fc3afac5aef562dccbc480 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439006/ERR1439006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439006/ERR1439006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439006/PHESPV0217.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439006/PHESPV0217.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439006/ERR1439006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439006/ERR1439006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439006/PHESPV0217.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439006/PHESPV0217.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89067885;92260611 ERS1194385 ERX1509384 GENOMIC 305519901 2016-06-10 PHESPV0217 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439006/PHESPV0217.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439006/PHESPV0217.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439006 PHESPV0217 ERR1439041 PHESPV0252 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439041 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439041 3d80f16861ad04b79cbb73be1b558039;822de6f5ec495c8747cc063a5fede0ab 1313 108821614 3d35b937627814ecc9e9b7195db31e78;b41e75bd784b3209fe2c78ff5d5a4e70 SAMEA4023310 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439041/ERR1439041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439041/ERR1439041_2.fastq.gz 1327037 WGS PHESPV0252 RANDOM 72232177;75716470 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e2573e0a4eb777ac5bc7bf1151bc33e6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439041/ERR1439041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439041/ERR1439041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439041/PHESPV0252.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439041/PHESPV0252.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439041/ERR1439041_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439041/ERR1439041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439041/PHESPV0252.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439041/PHESPV0252.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76716125;80188681 ERS1194420 ERX1509419 GENOMIC 259725830 2016-06-10 PHESPV0252 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439041/PHESPV0252.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439041/PHESPV0252.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439041 PHESPV0252 ERR1439044 PHESPV0255 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439044 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439044 6ec01e17f74bef7a00b89b5e2040c678;f2cdd0254861094ca0adfe89dce47e27 1313 145357363 526b851797801d03f65db877312e22a8;4fc6f19b275efd69b2f8c5d57b79713a SAMEA4023313 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439044/ERR1439044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439044/ERR1439044_2.fastq.gz 1799542 WGS PHESPV0255 RANDOM 98889818;100022228 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 210877f87476e4dc0e7688b3477fd724 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439044/ERR1439044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439044/ERR1439044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439044/PHESPV0255.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439044/PHESPV0255.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439044/ERR1439044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439044/ERR1439044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439044/PHESPV0255.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439044/PHESPV0255.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104718473;105845221 ERS1194423 ERX1509422 GENOMIC 353074630 2016-06-10 PHESPV0255 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439044/PHESPV0255.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439044/PHESPV0255.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439044 PHESPV0255 ERR1439025 PHESPV0236 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439025 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439025 a920526eea9b950b129d644017b3a4b6;9d0403953d47ec411481dbe0e02e6a8b 1313 90828878 e9c38d149cd5b9bf3c284a5d73df7dc8;181693ea9c9892cbd2dcb8ad5effcb0e SAMEA4023294 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439025/ERR1439025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439025/ERR1439025_2.fastq.gz 1130647 WGS PHESPV0236 RANDOM 61148403;63594853 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1dc134fa96835176daa4d68a11653c14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439025/ERR1439025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439025/ERR1439025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439025/PHESPV0236.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439025/PHESPV0236.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439025/ERR1439025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439025/ERR1439025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439025/PHESPV0236.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439025/PHESPV0236.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65070951;67478047 ERS1194404 ERX1509403 GENOMIC 221577157 2016-06-10 PHESPV0236 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439025/PHESPV0236.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439025/PHESPV0236.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439025 PHESPV0236 ERR1439047 PHESPV0258 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439047 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439047 c9754a7f0476a3e2f9c8627a7f574fca;94fda5244c6f80273ed5f714792b3e35 1313 161069106 4fe16b7f250b837c545fad904f5f7ca4;b82b76359ceb3bef8d0063a47eddb20f SAMEA4023316 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439047/ERR1439047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439047/ERR1439047_2.fastq.gz 1998422 WGS PHESPV0258 RANDOM 109651208;111081025 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 293045ece52fb9b60786af46a952f885 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439047/ERR1439047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439047/ERR1439047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439047/PHESPV0258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439047/PHESPV0258.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439047/ERR1439047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439047/ERR1439047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439047/PHESPV0258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439047/PHESPV0258.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116040741;117465404 ERS1194426 ERX1509425 GENOMIC 392226911 2016-06-10 PHESPV0258 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439047/PHESPV0258.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439047/PHESPV0258.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439047 PHESPV0258 ERR1439045 PHESPV0256 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439045 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439045 871e0616cfdbd01092aedc7891167e72;17611defb6b377ee45d60cc7e3bd5b23 1313 104038423 007e70156fa118e22c97476db54a48f7;0e120b9777f0a765a0321cb30dc0d950 SAMEA4023314 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439045/ERR1439045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439045/ERR1439045_2.fastq.gz 1253047 WGS PHESPV0256 RANDOM 67871329;70430354 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 435f9ac4ec78587ea9b1ba43d2e7fe28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439045/ERR1439045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439045/ERR1439045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439045/PHESPV0256.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439045/PHESPV0256.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439045/ERR1439045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439045/ERR1439045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439045/PHESPV0256.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439045/PHESPV0256.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72045659;74569067 ERS1194424 ERX1509423 GENOMIC 243962857 2016-06-10 PHESPV0256 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439045/PHESPV0256.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439045/PHESPV0256.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439045 PHESPV0256 ERR1439048 PHESPV0259 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439048 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439048 f26f49f6a195fb272d28d11edce472dc;06ca267fd1165338f9c4520ad016f51a 1313 106480279 6beea99d2aa931ec9fe532261c15f265;e13431f604696d57034a6bbb395a0f7f SAMEA4023317 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439048/ERR1439048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439048/ERR1439048_2.fastq.gz 1321204 WGS PHESPV0259 RANDOM 72439809;73202358 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c3478c87a60c3e5b1f95c3ced619c9c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439048/ERR1439048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439048/ERR1439048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439048/PHESPV0259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439048/PHESPV0259.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439048/ERR1439048_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439048/ERR1439048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439048/PHESPV0259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439048/PHESPV0259.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76909543;77664213 ERS1194427 ERX1509426 GENOMIC 259249755 2016-06-10 PHESPV0259 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439048/PHESPV0259.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439048/PHESPV0259.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439048 PHESPV0259 ERR1439052 PHESPV0263 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439052 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439052 aa834e299756d8868d8e42207378c96a;4e8972a0836185e39c7d75d81d3f12d7 1313 114618801 824644b46262ced403fbf21ac99360f0;21ec5c64f503a61cc02814b64f51772d SAMEA4023321 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439052/ERR1439052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439052/ERR1439052_2.fastq.gz 1418352 WGS PHESPV0263 RANDOM 77866664;78835643 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54df8ee5f34c7cefaf5228085ee0cc57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439052/ERR1439052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439052/ERR1439052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439052/PHESPV0263.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439052/PHESPV0263.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439052/ERR1439052_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439052/ERR1439052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439052/PHESPV0263.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439052/PHESPV0263.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82599146;83552223 ERS1194431 ERX1509430 GENOMIC 278184839 2016-06-10 PHESPV0263 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439052/PHESPV0263.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439052/PHESPV0263.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439052 PHESPV0263 ERR1439053 PHESPV0264 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439053 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439053 a7ad24bc61df9c7a1bfdba6add352ce2;6ce53e81b3a9260717c5dd0b305c1abc 1313 137043979 016d69a4f13e2b1a48cd55d915b77ec8;947ca950b0bfe7e2e0e09f8945bb33fc SAMEA4023322 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439053/ERR1439053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439053/ERR1439053_2.fastq.gz 1702434 WGS PHESPV0264 RANDOM 92915123;93865975 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9b3347bd6c179bcd14143e4af1c62fbf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439053/ERR1439053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439053/ERR1439053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439053/PHESPV0264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439053/PHESPV0264.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439053/ERR1439053_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439053/ERR1439053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439053/PHESPV0264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439053/PHESPV0264.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98498928;99444004 ERS1194432 ERX1509431 GENOMIC 334016548 2016-06-10 PHESPV0264 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439053/PHESPV0264.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439053/PHESPV0264.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439053 PHESPV0264 ERR1439054 PHESPV0265 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439054 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439054 afc0c86dac5dc678991429f231c8d6a8;b12ead570be73df6a1d9c2de65d410e7 1313 139263132 89adfc5b1a80be2f424df3ea53d248fd;4d91c9b7847f1ad4ac9e46a427c6a770 SAMEA4023323 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439054/ERR1439054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439054/ERR1439054_2.fastq.gz 1705458 WGS PHESPV0265 RANDOM 93450496;96207879 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d58c6c4c255043ec78a7650ea245e83a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439054/ERR1439054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439054/ERR1439054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439054/PHESPV0265.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439054/PHESPV0265.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439054/ERR1439054_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439054/ERR1439054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439054/PHESPV0265.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439054/PHESPV0265.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99013276;101762828 ERS1194433 ERX1509432 GENOMIC 333905243 2016-06-10 PHESPV0265 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439054/PHESPV0265.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439054/PHESPV0265.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439054 PHESPV0265 ERR1439055 PHESPV0266 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439055 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439055 3016f4445ac1b2b3f86e250ff42299b4;f00fc9199740a36547dfd82b9fdd8927 1313 113220492 5946fcbc1ad37ca8e5d8717888096e7a;2f460bfd4ebe1da593e3a9b47803f552 SAMEA4023324 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439055/ERR1439055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439055/ERR1439055_2.fastq.gz 1401539 WGS PHESPV0266 RANDOM 77196352;78086250 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6e87da2fd87b355cad020d206e3f45ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439055/ERR1439055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439055/ERR1439055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439055/PHESPV0266.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439055/PHESPV0266.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439055/ERR1439055_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439055/ERR1439055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439055/PHESPV0266.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439055/PHESPV0266.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81902071;82788463 ERS1194434 ERX1509433 GENOMIC 274947570 2016-06-10 PHESPV0266 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439055/PHESPV0266.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439055/PHESPV0266.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439055 PHESPV0266 ERR1439056 PHESPV0267 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439056 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439056 b39799bd761f703aa436d9eea7b6a0d1;b8df4c77f8eba217f5d2d298614cc77c 1313 92258251 af9421f350da30f2d20eb5dc73537390;b299fb69208901c87500228cae30e8f7 SAMEA4023325 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439056/ERR1439056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439056/ERR1439056_2.fastq.gz 1140115 WGS PHESPV0267 RANDOM 61423525;64997628 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5cca76bbd423918a0689c96ef09f5e3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439056/ERR1439056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439056/ERR1439056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439056/PHESPV0267.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439056/PHESPV0267.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439056/ERR1439056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439056/ERR1439056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439056/PHESPV0267.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439056/PHESPV0267.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65369981;68899606 ERS1194435 ERX1509434 GENOMIC 223102533 2016-06-10 PHESPV0267 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439056/PHESPV0267.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439056/PHESPV0267.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439056 PHESPV0267 ERR1439058 PHESPV0269 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439058 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439058 836c2da32e68f3e6665abbff855db7f8;bcafd0511ecfe915f031c9d616d0c72e 1313 128587190 a06c8be27751df60765ed1417469274c;eef3c9427fc60a9fc823e7912b539c81 SAMEA4023327 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439058/ERR1439058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439058/ERR1439058_2.fastq.gz 1567125 WGS PHESPV0269 RANDOM 86187908;89355353 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0907aee90ef486b3ac1dc6cd001a3be9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439058/ERR1439058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439058/ERR1439058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439058/PHESPV0269.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439058/PHESPV0269.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439058/ERR1439058_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439058/ERR1439058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439058/PHESPV0269.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439058/PHESPV0269.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91382717;94565156 ERS1194437 ERX1509436 GENOMIC 306671109 2016-06-10 PHESPV0269 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439058/PHESPV0269.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439058/PHESPV0269.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439058 PHESPV0269 ERR1439057 PHESPV0268 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439057 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439057 f014e28cf54ca50854b20061981c9cfb;652ab4cbda4222b0887efa4226d916cf 1313 141231667 6a52b85d070c76f64df9696b4bd55c3b;5ee98bab43ccd34128746340b5080744 SAMEA4023326 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439057/ERR1439057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439057/ERR1439057_2.fastq.gz 1739952 WGS PHESPV0268 RANDOM 95453089;96204575 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed808e2478a181f02ded0a446d79de32 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439057/ERR1439057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439057/ERR1439057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439057/PHESPV0268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439057/PHESPV0268.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439057/ERR1439057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439057/ERR1439057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439057/PHESPV0268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439057/PHESPV0268.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101082340;101825164 ERS1194436 ERX1509435 GENOMIC 340847459 2016-06-10 PHESPV0268 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439057/PHESPV0268.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439057/PHESPV0268.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439057 PHESPV0268 ERR1439060 PHESPV0271 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439060 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439060 d7cf8a47c01232721cc631021215328b;5449b1bac3c5f8a32ce16bcc59e77ef8 1313 124446547 1c5348634095926b618820f960159227;a6bd3d459b1b782e5c181153558296c2 SAMEA4023329 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439060/ERR1439060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439060/ERR1439060_2.fastq.gz 1556627 WGS PHESPV0271 RANDOM 83721559;86483269 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f6e907d515c622bcee5631e8b06f7d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439060/ERR1439060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439060/ERR1439060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439060/PHESPV0271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439060/PHESPV0271.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439060/ERR1439060_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439060/ERR1439060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439060/PHESPV0271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439060/PHESPV0271.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88909895;91638573 ERS1194439 ERX1509438 GENOMIC 305336538 2016-06-10 PHESPV0271 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439060/PHESPV0271.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439060/PHESPV0271.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439060 PHESPV0271 ERR1439062 PHESPV0273 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439062 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439062 7b886892fd45ac9d8a2fc458993a1687;9226d5f2ccc23410ac4aef1943d7e2de 1313 98682607 c9f8fa26e93fd0c4fade37eb8a95615a;b9b616ba34992c51a5ff069b75a543d1 SAMEA4023331 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439062/ERR1439062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439062/ERR1439062_2.fastq.gz 1205114 WGS PHESPV0273 RANDOM 66284206;68968898 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2635115f8083c1e5a66a00ab57194ac2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439062/ERR1439062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439062/ERR1439062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439062/PHESPV0273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439062/PHESPV0273.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439062/ERR1439062_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439062/ERR1439062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439062/PHESPV0273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439062/PHESPV0273.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70415947;73105746 ERS1194441 ERX1509440 GENOMIC 236088645 2016-06-10 PHESPV0273 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439062/PHESPV0273.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439062/PHESPV0273.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439062 PHESPV0273 ERR1439063 PHESPV0274 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439063 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439063 99f18b3513ed5826fd303fd94403eca6;f18c0151d83772cfd895f47d9d4be0f2 1313 98561573 8400dce0dcffad48d29ee71d7d90db82;6d96443a3f42dff1121b0ca194bc30f1 SAMEA4023332 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439063/ERR1439063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439063/ERR1439063_2.fastq.gz 1203632 WGS PHESPV0274 RANDOM 66065313;68762244 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cf23c00758e4fe4db72fa965983798a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439063/ERR1439063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439063/ERR1439063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439063/PHESPV0274.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439063/PHESPV0274.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439063/ERR1439063_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439063/ERR1439063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439063/PHESPV0274.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439063/PHESPV0274.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70196442;72887503 ERS1194442 ERX1509441 GENOMIC 235713180 2016-06-10 PHESPV0274 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439063/PHESPV0274.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439063/PHESPV0274.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439063 PHESPV0274 ERR1439069 PHESPV0280 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439069 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439069 c3588bc303a5db9f3a9311174a3b8725;4db357a76172d7c9922c4115c6dcee9e 1313 135146792 43180a27188d21a7174e9323d4f2f8ea;5b847181eefa16f4ca79c6b1b529b450 SAMEA4023338 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439069/ERR1439069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439069/ERR1439069_2.fastq.gz 1684849 WGS PHESPV0280 RANDOM 91118051;94601536 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6da082a866dea5b1e7cf8187629dc95e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439069/ERR1439069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439069/ERR1439069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439069/PHESPV0280.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439069/PHESPV0280.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439069/ERR1439069_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439069/ERR1439069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439069/PHESPV0280.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439069/PHESPV0280.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96674268;100125410 ERS1194448 ERX1509447 GENOMIC 330445883 2016-06-10 PHESPV0280 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439069/PHESPV0280.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439069/PHESPV0280.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439069 PHESPV0280 ERR1439070 PHESPV0281 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439070 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439070 4d1a2036217f1f65030e2e9888f01c94;bffbb1706a8d0f63fdddfe75e821730c 1313 87267190 20eb423b4652203280ec3723748b6974;f49643a8855883af869c8e7f3390193c SAMEA4023339 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439070/ERR1439070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439070/ERR1439070_2.fastq.gz 1062760 WGS PHESPV0281 RANDOM 58515663;61045037 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 46d891e0e49ef773d738737f8adfbee7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439070/ERR1439070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439070/ERR1439070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439070/PHESPV0281.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439070/PHESPV0281.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439070/ERR1439070_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439070/ERR1439070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439070/PHESPV0281.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439070/PHESPV0281.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62214841;64736542 ERS1194449 ERX1509448 GENOMIC 208084529 2016-06-10 PHESPV0281 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439070/PHESPV0281.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439070/PHESPV0281.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439070 PHESPV0281 ERR1439074 PHESPV0285 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439074 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439074 afebbb93d6dc44c79eb6fb763a0418f7;37eb184dbf5e2788081efe32da37a9fd 1313 80705594 ba203b7d70bb4bead36684f67f4d532e;38513189d662f14909d6ac392a20a2c9 SAMEA4023343 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439074/ERR1439074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439074/ERR1439074_2.fastq.gz 973358 WGS PHESPV0285 RANDOM 53476435;56615303 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 38cd37dbcffce54b480bb288cc733e9e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439074/ERR1439074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439074/ERR1439074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439074/PHESPV0285.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439074/PHESPV0285.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439074/ERR1439074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439074/ERR1439074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439074/PHESPV0285.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439074/PHESPV0285.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56897264;60016517 ERS1194453 ERX1509452 GENOMIC 190143000 2016-06-10 PHESPV0285 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439074/PHESPV0285.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439074/PHESPV0285.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439074 PHESPV0285 ERR1439077 PHESPV0288 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439077 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439077 911c5f3278aad5ed7ad75a2aa02d1616;16ddecb76db301325317fa40f052b6b0 1313 103865531 e4ddef4412fc039067260cf756f196f6;380401ad74c62a8464e0317411c337b6 SAMEA4023346 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439077/ERR1439077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439077/ERR1439077_2.fastq.gz 1268794 WGS PHESPV0288 RANDOM 69730086;72444424 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d43fedec6c2f52c5cbedca3194a11f71 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439077/ERR1439077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439077/ERR1439077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439077/PHESPV0288.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439077/PHESPV0288.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439077/ERR1439077_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439077/ERR1439077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439077/PHESPV0288.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439077/PHESPV0288.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74060903;76784628 ERS1194456 ERX1509455 GENOMIC 248373339 2016-06-10 PHESPV0288 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439077/PHESPV0288.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439077/PHESPV0288.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439077 PHESPV0288 ERR1439083 PHESPV0294 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439083 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439083 444df6f4343f7918a68a0b3b6754b59e;084e68e6a04e66bd8fff51fcfd0622ac 1313 110997386 53d8c8e0b99891b411b8eb222501f0a9;2ca3eeda7fcae936d1c48324ea3c9c6d SAMEA4023352 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439083/ERR1439083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439083/ERR1439083_2.fastq.gz 1350173 WGS PHESPV0294 RANDOM 74284446;76806745 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 14d21f169678cea9994b0a52b036c773 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439083/ERR1439083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439083/ERR1439083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439083/PHESPV0294.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439083/PHESPV0294.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439083/ERR1439083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439083/ERR1439083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439083/PHESPV0294.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439083/PHESPV0294.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78811383;81342163 ERS1194462 ERX1509461 GENOMIC 264127114 2016-06-10 PHESPV0294 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439083/PHESPV0294.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439083/PHESPV0294.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439083 PHESPV0294 ERR1439082 PHESPV0293 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439082 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439082 f1ddb23ce7fd4eb4a90005e3d8422ebf;5456325ff3f637589d238800ec2a88a4 1313 221888359 edb8a5e732f109bb566476a96caafe29;b17ccddd68eeeac0da06dbcde743728e SAMEA4023351 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439082/ERR1439082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439082/ERR1439082_2.fastq.gz 2776129 WGS PHESPV0293 RANDOM 152138176;152612432 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff38cf12ef50326599e86bce4e0f6759 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439082/ERR1439082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439082/ERR1439082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439082/PHESPV0293.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439082/PHESPV0293.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439082/ERR1439082_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439082/ERR1439082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439082/PHESPV0293.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439082/PHESPV0293.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 160570463;161059823 ERS1194461 ERX1509460 GENOMIC 545617582 2016-06-10 PHESPV0293 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439082/PHESPV0293.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439082/PHESPV0293.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439082 PHESPV0293 ERR1439071 PHESPV0282 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439071 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439071 3bad0393d33602ddd85415837e37918e;e3ebe6b3d657f29a80c0320bfd927c51 1313 120517151 8c8ff70a72bb71b3276e841f4f28a089;d9f6efc29aabcd456a83f0182e56f563 SAMEA4023340 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439071/ERR1439071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439071/ERR1439071_2.fastq.gz 1509441 WGS PHESPV0282 RANDOM 80844244;83737399 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f86f8aaddfcbd0878b4c44fb9ff85567 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439071/ERR1439071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439071/ERR1439071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439071/PHESPV0282.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439071/PHESPV0282.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439071/ERR1439071_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439071/ERR1439071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439071/PHESPV0282.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439071/PHESPV0282.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85850072;88700118 ERS1194450 ERX1509449 GENOMIC 296098887 2016-06-10 PHESPV0282 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439071/PHESPV0282.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439071/PHESPV0282.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439071 PHESPV0282 ERR1439086 PHESPV0297 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439086 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439086 b35511ee315da900e13210ea43233099;d4b7c9ffdfeba1f0c5954b8166087abe 1313 123139247 116797650da387ef5245284546219603;32ab90ac474a98bd51b0f8f6dfce3644 SAMEA4023355 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439086/ERR1439086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439086/ERR1439086_2.fastq.gz 1539462 WGS PHESPV0297 RANDOM 84584746;84967003 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 887575b4b7648e9aa98cfd1f8f4b43c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439086/ERR1439086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439086/ERR1439086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439086/PHESPV0297.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439086/PHESPV0297.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439086/ERR1439086_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439086/ERR1439086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439086/PHESPV0297.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439086/PHESPV0297.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89688243;90074323 ERS1194465 ERX1509464 GENOMIC 302468825 2016-06-10 PHESPV0297 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439086/PHESPV0297.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439086/PHESPV0297.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439086 PHESPV0297 ERR1439084 PHESPV0295 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439084 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439084 0f4e58f04212f9facb1e128c1a1371a8;5df192b33bf902ce5a70803fedc352c5 1313 136287445 25f11489df8c4e16fca048c8992f1411;a2a7d2cb816777e1363b8173fb680f75 SAMEA4023353 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439084/ERR1439084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439084/ERR1439084_2.fastq.gz 1703121 WGS PHESPV0295 RANDOM 93376363;94006903 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a0083bf110bc6fd9de900ae1b7649525 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439084/ERR1439084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439084/ERR1439084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439084/PHESPV0295.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439084/PHESPV0295.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439084/ERR1439084_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439084/ERR1439084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439084/PHESPV0295.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439084/PHESPV0295.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98938522;99567821 ERS1194463 ERX1509462 GENOMIC 334541920 2016-06-10 PHESPV0295 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439084/PHESPV0295.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439084/PHESPV0295.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439084 PHESPV0295 ERR1439091 PHESPV0302 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439091 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439091 3cbdb9200eea13bd3f56a8f724f37d45;4eefc429dc3a21db734e8b710db1259b 1313 121187156 6709cd2170293678b4ef5ec014f1486c;634413ddd259dadad391a14ceed29273 SAMEA4023360 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439091/ERR1439091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439091/ERR1439091_2.fastq.gz 1511552 WGS PHESPV0302 RANDOM 82949655;83579390 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 70df3f75da577a90cecb96ae5595233f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439091/ERR1439091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439091/ERR1439091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439091/PHESPV0302.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439091/PHESPV0302.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439091/ERR1439091_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439091/ERR1439091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439091/PHESPV0302.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439091/PHESPV0302.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87972269;88598709 ERS1194470 ERX1509469 GENOMIC 296826367 2016-06-10 PHESPV0302 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439091/PHESPV0302.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439091/PHESPV0302.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439091 PHESPV0302 ERR1439093 PHESPV0304 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439093 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439093 27d518c7a0444d19cb732029a0de2e31;61b5e48b893ffce9b5fba4431a1a9113 1313 109950297 bb83d01bdfbf90374967ae0879107005;3c24d39e885d898baa269be47d6cb3db SAMEA4023362 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439093/ERR1439093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439093/ERR1439093_2.fastq.gz 1358724 WGS PHESPV0304 RANDOM 74632396;76185148 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 77ca164694739ed54f8b62e487a21a20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439093/ERR1439093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439093/ERR1439093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439093/PHESPV0304.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439093/PHESPV0304.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439093/ERR1439093_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439093/ERR1439093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439093/PHESPV0304.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439093/PHESPV0304.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79186682;80736132 ERS1194472 ERX1509471 GENOMIC 266548883 2016-06-10 PHESPV0304 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439093/PHESPV0304.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439093/PHESPV0304.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439093 PHESPV0304 ERR1439094 PHESPV0305 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439094 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439094 af8c998ffb954b8f3cdc8bef4418b0f0;5a0ead4a637c8b8f460e5f80e04c9f4d 1313 113357452 93e3fc096eb14c73f8c321864c121139;8b7e91cc691dea8a42fcf46bbb4fdba1 SAMEA4023363 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439094/ERR1439094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439094/ERR1439094_2.fastq.gz 1423464 WGS PHESPV0305 RANDOM 77634339;77683462 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c5595c51bda4ac9395b44655fd6c82a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439094/ERR1439094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439094/ERR1439094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439094/PHESPV0305.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439094/PHESPV0305.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439094/ERR1439094_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439094/ERR1439094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439094/PHESPV0305.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439094/PHESPV0305.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82410481;82453526 ERS1194473 ERX1509472 GENOMIC 279718966 2016-06-10 PHESPV0305 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439094/PHESPV0305.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439094/PHESPV0305.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439094 PHESPV0305 ERR1439097 PHESPV0308 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439097 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439097 4c78020ee8aef2e65aa270a6b0de3870;6cd82e9612291a833706ae15308233e0 1313 175453634 0faa7da11c06cc91138877e53eb6db3c;ab3c1223d8c018f2cc1ecb97a4979057 SAMEA4023366 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439097/ERR1439097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439097/ERR1439097_2.fastq.gz 2202062 WGS PHESPV0308 RANDOM 119997690;119971270 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1fbab399f50246c759ac8cf5ee2ad88a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439097/ERR1439097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439097/ERR1439097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439097/PHESPV0308.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439097/PHESPV0308.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439097/ERR1439097_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439097/ERR1439097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439097/PHESPV0308.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439097/PHESPV0308.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126863589;126833951 ERS1194476 ERX1509475 GENOMIC 432540195 2016-06-10 PHESPV0308 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439097/PHESPV0308.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439097/PHESPV0308.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439097 PHESPV0308 ERR1439101 PHESPV0312 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439101 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439101 7413c5c14ee63bd756d6c83749d54b80;0bd057d7d124661dbe5c43aa41142e36 1313 70196219 66159b04441da9f9011c9a170d3b2ab6;e372fa1e76e09d5c0e7a60b80efe860c SAMEA4023370 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439101/ERR1439101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439101/ERR1439101_2.fastq.gz 856710 WGS PHESPV0312 RANDOM 46566078;49201678 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ec5a5dd9587a24dcfbb25babba5f6ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439101/ERR1439101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439101/ERR1439101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439101/PHESPV0312.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439101/PHESPV0312.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439101/ERR1439101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439101/ERR1439101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439101/PHESPV0312.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439101/PHESPV0312.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49656817;52227100 ERS1194480 ERX1509479 GENOMIC 167367844 2016-06-10 PHESPV0312 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439101/PHESPV0312.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439101/PHESPV0312.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439101 PHESPV0312 ERR1439102 PHESPV0313 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439102 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439102 a3d8e9968fa1dd37ac56a39229dcc002;6f1b18f627d99a1536fc3a836e497db1 1313 129711616 e29e2a2dcc6fd71f5913b4c7f5c808c0;88b0df88c9eb3613b2bd76cbcab2e868 SAMEA4023371 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439102/ERR1439102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439102/ERR1439102_2.fastq.gz 1619161 WGS PHESPV0313 RANDOM 88626725;88859312 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee27b18196b7f7471177080f18b820a6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439102/ERR1439102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439102/ERR1439102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439102/PHESPV0313.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439102/PHESPV0313.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439102/ERR1439102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439102/ERR1439102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439102/PHESPV0313.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439102/PHESPV0313.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93944821;94171214 ERS1194481 ERX1509480 GENOMIC 317908520 2016-06-10 PHESPV0313 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439102/PHESPV0313.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439102/PHESPV0313.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439102 PHESPV0313 ERR1439103 PHESPV0314 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439103 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439103 1ebb0711b99a91dd77a6e798ef4fd591;feca89ed1edca4b5fd4f32793f279fda 1313 132829793 ab96f8017ff0764e23492e3c681a5112;3d0197e8827dacf47ba6fecbc309ff59 SAMEA4023372 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439103/ERR1439103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439103/ERR1439103_2.fastq.gz 1625794 WGS PHESPV0314 RANDOM 89013272;92129456 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 74e48484c6dd1beb9381f4bbc2163880 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439103/ERR1439103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439103/ERR1439103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439103/PHESPV0314.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439103/PHESPV0314.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439103/ERR1439103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439103/ERR1439103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439103/PHESPV0314.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439103/PHESPV0314.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94366218;97490659 ERS1194482 ERX1509481 GENOMIC 318531312 2016-06-10 PHESPV0314 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439103/PHESPV0314.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439103/PHESPV0314.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439103 PHESPV0314 ERR1439104 PHESPV0315 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439104 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439104 662ac69c0b74f41a846b1ddab8f5c759;b9ee9c93e93a1503c8eac816206cb143 1313 88947533 5846189d7ef2bb8572d3a428b1024914;34e6b5e560fab758de5b2f7d2b74e71a SAMEA4023373 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439104/ERR1439104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439104/ERR1439104_2.fastq.gz 1087415 WGS PHESPV0315 RANDOM 59631101;62112761 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d2dd170245caa231a5858027e9a663ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439104/ERR1439104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439104/ERR1439104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439104/PHESPV0315.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439104/PHESPV0315.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439104/ERR1439104_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439104/ERR1439104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439104/PHESPV0315.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439104/PHESPV0315.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63407870;65873718 ERS1194483 ERX1509482 GENOMIC 213012651 2016-06-10 PHESPV0315 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439104/PHESPV0315.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439104/PHESPV0315.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439104 PHESPV0315 ERR1439105 PHESPV0316 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439105 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439105 ab735ac0561daa6259af768dd18ea998;dcb542e749aefc6ccde6b3dd928bdf68 1313 85113077 b6554c862d5d4300d205b52ff466df1b;3cda377254d009099c791b502adfca08 SAMEA4023374 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439105/ERR1439105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439105/ERR1439105_2.fastq.gz 1040251 WGS PHESPV0316 RANDOM 57123861;59362840 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5bdc2f980d26e1444d1b63673402076b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439105/ERR1439105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439105/ERR1439105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439105/PHESPV0316.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439105/PHESPV0316.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439105/ERR1439105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439105/ERR1439105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439105/PHESPV0316.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439105/PHESPV0316.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60762828;62992587 ERS1194484 ERX1509483 GENOMIC 203662530 2016-06-10 PHESPV0316 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439105/PHESPV0316.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439105/PHESPV0316.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439105 PHESPV0316 ERR1439109 PHESPV0320 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439109 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439109 6a36725b7367efe978c59812b62b6ed6;177a3d88aa06ffbbe7bd4f5a179b9522 1313 113097853 e238bfc51c41b3c10aaed6d6d68bd1ae;58aa1963a8f69695d6a80a1faa5e59c6 SAMEA4023378 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439109/ERR1439109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439109/ERR1439109_2.fastq.gz 1382786 WGS PHESPV0320 RANDOM 75784686;78677771 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ec8e237a4aa05001d6027f29ec86a121 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439109/ERR1439109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439109/ERR1439109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439109/PHESPV0320.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439109/PHESPV0320.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439109/ERR1439109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439109/ERR1439109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439109/PHESPV0320.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439109/PHESPV0320.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80409582;83299137 ERS1194488 ERX1509487 GENOMIC 270764207 2016-06-10 PHESPV0320 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439109/PHESPV0320.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439109/PHESPV0320.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439109 PHESPV0320 ERR1439112 PHESPV0323 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439112 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439112 180e252e487173902db25f9cdb2774ec;48f5ebee6903cca5e9b59fc7eb2cc910 1313 93229013 c88170cf543f1bfd6522509afd80af4c;9ba4b9d37e9e09683d1bcc04e86581b9 SAMEA4023381 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439112/ERR1439112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439112/ERR1439112_2.fastq.gz 1125712 WGS PHESPV0323 RANDOM 61719200;65328163 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 16300f109379bcee9c78f673c00a1490 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439112/ERR1439112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439112/ERR1439112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439112/PHESPV0323.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439112/PHESPV0323.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439112/ERR1439112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439112/ERR1439112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439112/PHESPV0323.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439112/PHESPV0323.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65584174;69171142 ERS1194491 ERX1509490 GENOMIC 219806015 2016-06-10 PHESPV0323 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439112/PHESPV0323.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439112/PHESPV0323.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439112 PHESPV0323 ERR1439113 PHESPV0324 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439113 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439113 b2e8d7a1aab86a7e46334d4012d08a24;826f40c83d038609b2dd9ff9074d0f10 1313 119062966 9ff6710dded7325a9d62c60b56d101df;e0b693546cdfc3a03f88ed8420dae50f SAMEA4023382 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439113/ERR1439113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439113/ERR1439113_2.fastq.gz 1454621 WGS PHESPV0324 RANDOM 79819796;83285022 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 793a81798b9463c9e792ae1b22c891b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439113/ERR1439113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439113/ERR1439113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439113/PHESPV0324.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439113/PHESPV0324.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439113/ERR1439113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439113/ERR1439113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439113/PHESPV0324.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439113/PHESPV0324.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84703262;88178368 ERS1194492 ERX1509491 GENOMIC 284895884 2016-06-10 PHESPV0324 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439113/PHESPV0324.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439113/PHESPV0324.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439113 PHESPV0324 ERR1439116 PHESPV0327 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439116 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439116 80d07ac0c3e7770f1dca32ba190a28fa;d74179899467abcbf0e4a6f07bf8b92f 1313 123775030 67cef062ad9abc039409e7bea9b1cbea;ce9bdd919566f7e6f00d36b3db33765b SAMEA4023385 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439116/ERR1439116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439116/ERR1439116_2.fastq.gz 1531812 WGS PHESPV0327 RANDOM 84628589;85376766 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 922f0c2046436fd2161e2d7b3ee10cc6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439116/ERR1439116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439116/ERR1439116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439116/PHESPV0327.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439116/PHESPV0327.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439116/ERR1439116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439116/ERR1439116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439116/PHESPV0327.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439116/PHESPV0327.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89729629;90481955 ERS1194495 ERX1509494 GENOMIC 300618023 2016-06-10 PHESPV0327 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439116/PHESPV0327.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439116/PHESPV0327.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439116 PHESPV0327 ERR1439117 PHESPV0328 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439117 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439117 b609170504b2ae758fa7383c00422ff6;fdc0e302f8b674eec9ba1c78c2df14ba 1313 113904269 e3d44dccd1118e67905dc472c8edeaf2;a017fca979f8baa062e8db1e019d080b SAMEA4023386 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439117/ERR1439117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439117/ERR1439117_2.fastq.gz 1410624 WGS PHESPV0328 RANDOM 77432434;77895161 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c966523b2bee5a39bd7d4e3ac58fee0e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439117/ERR1439117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439117/ERR1439117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439117/PHESPV0328.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439117/PHESPV0328.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439117/ERR1439117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439117/ERR1439117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439117/PHESPV0328.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439117/PHESPV0328.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82150095;82606568 ERS1194496 ERX1509495 GENOMIC 276626273 2016-06-10 PHESPV0328 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439117/PHESPV0328.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439117/PHESPV0328.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439117 PHESPV0328 ERR1439120 PHESPV0331 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439120 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439120 b0bd4dc73ec82b6d29b64a204cbee582;7be96f477886975491a249c819bf3916 1313 111067530 4c2087b79c178879041bf73c872e2fc9;60bbc0bd1891822de6ab27d422a590e9 SAMEA4023389 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439120/ERR1439120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439120/ERR1439120_2.fastq.gz 1377943 WGS PHESPV0331 RANDOM 75777187;76273248 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 28762edcbbe57f1ef231d01f69f5b167 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439120/ERR1439120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439120/ERR1439120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439120/PHESPV0331.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439120/PHESPV0331.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439120/ERR1439120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439120/ERR1439120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439120/PHESPV0331.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439120/PHESPV0331.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80424385;80917368 ERS1194499 ERX1509498 GENOMIC 270323294 2016-06-10 PHESPV0331 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439120/PHESPV0331.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439120/PHESPV0331.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439120 PHESPV0331 ERR1439123 PHESPV0334 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439123 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439123 b03f110ce3f69353f119df665acfda6c;453d031172da0a8d54c190cea2e14f41 1313 120175688 b020c88f500b9a6006494709f38b2ffc;c448f578a99e636a2dbbe738b02adde5 SAMEA4023392 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439123/ERR1439123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439123/ERR1439123_2.fastq.gz 1486540 WGS PHESPV0334 RANDOM 82059257;82833264 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4cbcf28ec37f5e59f9fcda3973012402 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439123/ERR1439123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439123/ERR1439123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439123/PHESPV0334.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439123/PHESPV0334.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439123/ERR1439123_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439123/ERR1439123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439123/PHESPV0334.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439123/PHESPV0334.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87008264;87782872 ERS1194502 ERX1509501 GENOMIC 291682223 2016-06-10 PHESPV0334 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439123/PHESPV0334.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439123/PHESPV0334.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439123 PHESPV0334 ERR1439127 PHESPV0338 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439127 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439127 0a27777306b0979fc193f102886bcf3b;954551bb86367e4dfd891e4a904557cf 1313 90117500 0db43226c6907f57d48f1d4589435352;ccc9d229005ae03d3bb37372f2d6a95e SAMEA4023396 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439127/ERR1439127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439127/ERR1439127_2.fastq.gz 1101326 WGS PHESPV0338 RANDOM 60814649;62470928 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2c50178d255f0af162450db2bde199b3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439127/ERR1439127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439127/ERR1439127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439127/PHESPV0338.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439127/PHESPV0338.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439127/ERR1439127_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439127/ERR1439127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439127/PHESPV0338.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439127/PHESPV0338.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64642072;66291565 ERS1194506 ERX1509505 GENOMIC 215639904 2016-06-10 PHESPV0338 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439127/PHESPV0338.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439127/PHESPV0338.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439127 PHESPV0338 ERR1439129 PHESPV0340 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439129 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439129 d08ff82366b98f702c059f32d1892312;cb8b6d4d9de214abd3f02b2293f388aa 1313 61764393 ecef9a66a0dd8658e440a0dec20f809b;088fcac5af5639b2223180b1c0c883e0 SAMEA4023398 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439129/ERR1439129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439129/ERR1439129_2.fastq.gz 760841 WGS PHESPV0340 RANDOM 41985464;42747724 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d1b9c1932dc0af114de951b7bc168c36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439129/ERR1439129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439129/ERR1439129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439129/PHESPV0340.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439129/PHESPV0340.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439129/ERR1439129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439129/ERR1439129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439129/PHESPV0340.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439129/PHESPV0340.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 44738984;45490173 ERS1194508 ERX1509507 GENOMIC 149142335 2016-06-10 PHESPV0340 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439129/PHESPV0340.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439129/PHESPV0340.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439129 PHESPV0340 ERR1439132 PHESPV0343 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439132 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439132 1eb479255583547cb378baafef24a51c;72df8cb5247a2eac812040c89fa27435 1313 99127425 086eb76671be62c0fcfafa5211560f95;91d9d395e6c4e51a771dbcc3d237fa97 SAMEA4023401 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439132/ERR1439132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439132/ERR1439132_2.fastq.gz 1218489 WGS PHESPV0343 RANDOM 67726823;68146426 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fd9a32ab6a0b26ce574020a5129d776c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439132/ERR1439132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439132/ERR1439132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439132/PHESPV0343.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439132/PHESPV0343.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439132/ERR1439132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439132/ERR1439132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439132/PHESPV0343.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439132/PHESPV0343.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71888458;72309848 ERS1194511 ERX1509510 GENOMIC 238772142 2016-06-10 PHESPV0343 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439132/PHESPV0343.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439132/PHESPV0343.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439132 PHESPV0343 ERR1439130 PHESPV0341 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439130 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439130 99f4efe77a2b64751a6900e5e519ae8d;caf7d70319d793122adc48bc104ddbf6 1313 88034862 c597a99d1d1f29426be88762f7d94d8a;b1b851c8c2e1f1cf3bded63ff0e68943 SAMEA4023399 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439130/ERR1439130_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439130/ERR1439130_2.fastq.gz 1091549 WGS PHESPV0341 RANDOM 60098136;60735158 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c093686184f2f081983980f25dd14100 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439130/ERR1439130_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439130/ERR1439130_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439130/PHESPV0341.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439130/PHESPV0341.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439130/ERR1439130_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439130/ERR1439130_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439130/PHESPV0341.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439130/PHESPV0341.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63894927;64526786 ERS1194509 ERX1509508 GENOMIC 214171453 2016-06-10 PHESPV0341 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439130/PHESPV0341.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439130/PHESPV0341.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439130 PHESPV0341 ERR1439136 PHESPV0347 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439136 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439136 ef43bfaedf24bbdfedfcfde62aa9c114;02eddb94d740f2f73195e3a27be49262 1313 94723601 e79c2c8e1f621a87e9bdd5f92d466a99;0c6f58d11f6a32338a1e43f2e0eb6d0c SAMEA4023405 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439136/ERR1439136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439136/ERR1439136_2.fastq.gz 1165377 WGS PHESPV0347 RANDOM 64209093;65623384 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ea7559296cf70015ee576e286bb9ee4f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439136/ERR1439136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439136/ERR1439136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439136/PHESPV0347.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439136/PHESPV0347.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439136/ERR1439136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439136/ERR1439136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439136/PHESPV0347.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439136/PHESPV0347.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68215201;69615106 ERS1194515 ERX1509514 GENOMIC 228435353 2016-06-10 PHESPV0347 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439136/PHESPV0347.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439136/PHESPV0347.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439136 PHESPV0347 ERR1439135 PHESPV0346 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439135 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439135 06dec3eed8d0775f761efdfc3fe8746c;7b8e6a90c7df5ba153d9f55301945562 1313 101418955 9e6b2f3d8ef8bd9d0a78d9b3a27c258a;8fcd7357548c7da77770cebac48f752a SAMEA4023404 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439135/ERR1439135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439135/ERR1439135_2.fastq.gz 1250721 WGS PHESPV0346 RANDOM 68670481;69880687 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d95a0ebe5ab7541b756623468b21eb55 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439135/ERR1439135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439135/ERR1439135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439135/PHESPV0346.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439135/PHESPV0346.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439135/ERR1439135_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439135/ERR1439135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439135/PHESPV0346.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439135/PHESPV0346.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72924551;74126726 ERS1194514 ERX1509513 GENOMIC 245153886 2016-06-10 PHESPV0346 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439135/PHESPV0346.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439135/PHESPV0346.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439135 PHESPV0346 ERR1439131 PHESPV0342 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439131 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439131 8febc46e4a82036a25b1da40f9b3a1d3;bdca6e34891309e4e9d9f0f517ad6d50 1313 105608429 235ab541e684c7f8f1d85f058e56d12d;91e0fe8d3b95e3841216295a80584068 SAMEA4023400 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439131/ERR1439131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439131/ERR1439131_2.fastq.gz 1298637 WGS PHESPV0342 RANDOM 71525057;72759778 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aae01fa1a3da1e71ce95746e0acedada ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439131/ERR1439131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439131/ERR1439131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439131/PHESPV0342.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439131/PHESPV0342.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439131/ERR1439131_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439131/ERR1439131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439131/PHESPV0342.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439131/PHESPV0342.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75904431;77135358 ERS1194510 ERX1509509 GENOMIC 254604909 2016-06-10 PHESPV0342 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439131/PHESPV0342.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439131/PHESPV0342.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439131 PHESPV0342 ERR1439139 PHESPV0350 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439139 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439139 5167cadf088fe074aad6be8a56f92527;c54e0c4474cafe39c76b8972502fdc93 1313 93194498 cf3cef7db7fc146f23a27c7d1c91d4b6;4cb3769e342ed2cc747a6f3af4f32cc2 SAMEA4023408 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439139/ERR1439139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439139/ERR1439139_2.fastq.gz 1133927 WGS PHESPV0350 RANDOM 62438858;64949524 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0bacd74fb342544efc253cbe76100c9e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439139/ERR1439139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439139/ERR1439139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439139/PHESPV0350.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439139/PHESPV0350.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439139/ERR1439139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439139/ERR1439139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439139/PHESPV0350.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439139/PHESPV0350.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66351682;68842595 ERS1194518 ERX1509517 GENOMIC 221793579 2016-06-10 PHESPV0350 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439139/PHESPV0350.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439139/PHESPV0350.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439139 PHESPV0350 ERR1439141 PHESPV0352 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439141 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439141 e32af2322940938128dbe925b40ec3b3;a9c4b79439726c8cfb509743be35337f 1313 79021755 30c3af888f3813908ed977b38f297bac;08a0a52feb8caa79785cd35811af3d41 SAMEA4023410 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439141/ERR1439141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439141/ERR1439141_2.fastq.gz 971892 WGS PHESPV0352 RANDOM 53471319;54631360 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2a9baa89d97a996e4c9fc7382cbe9fe8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439141/ERR1439141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439141/ERR1439141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439141/PHESPV0352.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439141/PHESPV0352.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439141/ERR1439141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439141/ERR1439141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439141/PHESPV0352.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439141/PHESPV0352.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56886529;58030321 ERS1194520 ERX1509519 GENOMIC 190476154 2016-06-10 PHESPV0352 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439141/PHESPV0352.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439141/PHESPV0352.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439141 PHESPV0352 ERR1439146 PHESPV0357 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439146 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439146 fd790ef538c7ce4dc8a865a80e859eec;29eaf13d7f71db1b701bfe7396431163 1313 97642277 4e14e74acabd663d163a13d4360cd3b4;80bf4039394b8cae1d716cac8e7c5279 SAMEA4023415 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439146/ERR1439146_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439146/ERR1439146_2.fastq.gz 1206503 WGS PHESPV0357 RANDOM 66247425;67499047 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f40a1ca2a31e26c7ac2624da0842469 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439146/ERR1439146_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439146/ERR1439146_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439146/PHESPV0357.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439146/PHESPV0357.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439146/ERR1439146_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439146/ERR1439146_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439146/PHESPV0357.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439146/PHESPV0357.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70380306;71624606 ERS1194525 ERX1509524 GENOMIC 236567062 2016-06-10 PHESPV0357 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439146/PHESPV0357.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439146/PHESPV0357.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439146 PHESPV0357 ERR1439142 PHESPV0353 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439142 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439142 046d5f0be7149bbc1140e58890e79088;fd5e9ebbc4cc1a06295d3b776f6af8f1 1313 108716486 2d99d31b61431463437ffdef8b5eca59;ea00ceb821a55946bfef9c96e2ef1afb SAMEA4023411 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439142/ERR1439142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439142/ERR1439142_2.fastq.gz 1320341 WGS PHESPV0353 RANDOM 72817940;75884386 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad636908066f85f4ea8e141edb2abd54 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439142/ERR1439142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439142/ERR1439142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439142/PHESPV0353.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439142/PHESPV0353.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439142/ERR1439142_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439142/ERR1439142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439142/PHESPV0353.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439142/PHESPV0353.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77271193;80343172 ERS1194521 ERX1509520 GENOMIC 258170773 2016-06-10 PHESPV0353 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439142/PHESPV0353.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439142/PHESPV0353.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439142 PHESPV0353 ERR1439147 PHESPV0358 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439147 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439147 4396a90a22a78435fa939ddfb51e3231;23d8d6d24d57734c27f8df185799efd6 1313 93083167 c2bc99e031d0a9d2e0c0f623b3b008c5;e414171d62ee06c24158ceca83d1b20b SAMEA4023416 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439147/ERR1439147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439147/ERR1439147_2.fastq.gz 1149703 WGS PHESPV0358 RANDOM 63169432;64414638 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 49a37003309656ad1d28c10e7ea9ecc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439147/ERR1439147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439147/ERR1439147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439147/PHESPV0358.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439147/PHESPV0358.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439147/ERR1439147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439147/ERR1439147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439147/PHESPV0358.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439147/PHESPV0358.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67140766;68380907 ERS1194526 ERX1509525 GENOMIC 225460422 2016-06-10 PHESPV0358 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439147/PHESPV0358.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439147/PHESPV0358.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439147 PHESPV0358 ERR1439150 PHESPV0361 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439150 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439150 ffece9945d3533dc280dfb6ce1c7f057;a2372d95d88aae419e5e57b5f2b99fa5 1313 87758588 124861fb34cc8596114949ede35a36e3;8e15dd5125c0e7522102f7822b15ac22 SAMEA4023419 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439150/ERR1439150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439150/ERR1439150_2.fastq.gz 1073440 WGS PHESPV0361 RANDOM 59521345;60565516 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f6cf351d0d85fafbe82b82be8b99594 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439150/ERR1439150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439150/ERR1439150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439150/PHESPV0361.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439150/PHESPV0361.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439150/ERR1439150_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439150/ERR1439150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439150/PHESPV0361.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439150/PHESPV0361.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63236209;64272238 ERS1194529 ERX1509528 GENOMIC 210273231 2016-06-10 PHESPV0361 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439150/PHESPV0361.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439150/PHESPV0361.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439150 PHESPV0361 ERR1439151 PHESPV0362 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439151 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439151 5dfd6ba2c5b8902ea3b5e8f2d3c3f5d3;c4978f7b84bb5b0812753c42c1b17ea4 1313 103512972 c054d145ab219fb471addde70bdd2754;630eaaccbbcdf7ed8d27acbf6f29692d SAMEA4023420 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439151/ERR1439151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439151/ERR1439151_2.fastq.gz 1291833 WGS PHESPV0362 RANDOM 69771254;72440772 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8bc01aa1a0e612411a1a758d85371de6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439151/ERR1439151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439151/ERR1439151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439151/PHESPV0362.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439151/PHESPV0362.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439151/ERR1439151_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439151/ERR1439151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439151/PHESPV0362.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439151/PHESPV0362.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74184613;76812824 ERS1194530 ERX1509529 GENOMIC 253302871 2016-06-10 PHESPV0362 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439151/PHESPV0362.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439151/PHESPV0362.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439151 PHESPV0362 ERR1439152 PHESPV0363 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439152 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439152 1aaf8cc17cf57557ad8edae005c08898;112def76d71431ab8c19e4d2d0deb966 1313 119447199 51e037fbd98ee917ab9104a4d6dbe093;117f5577cd236473dc5a0b5d82bfada8 SAMEA4023421 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439152/ERR1439152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439152/ERR1439152_2.fastq.gz 1490571 WGS PHESPV0363 RANDOM 82006897;82006432 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b24ba5cd5c7f1fd84e2b5cd13a18ac8a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439152/ERR1439152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439152/ERR1439152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439152/PHESPV0363.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439152/PHESPV0363.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439152/ERR1439152_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439152/ERR1439152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439152/PHESPV0363.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439152/PHESPV0363.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86971330;86962604 ERS1194531 ERX1509530 GENOMIC 292746541 2016-06-10 PHESPV0363 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439152/PHESPV0363.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439152/PHESPV0363.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439152 PHESPV0363 ERR1439155 PHESPV0366 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439155 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439155 33cb13c4b11d65880f2e107163441a16;7f25bc9a1797d5ea63e31683b4616e1c 1313 134344246 c99c5c538d02e0036b3d5b12582c413a;571523f637dafd186ff87a01e11cb764 SAMEA4023424 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439155/ERR1439155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439155/ERR1439155_2.fastq.gz 1678329 WGS PHESPV0366 RANDOM 92297354;91981186 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0207b952c0c2d2e86250436aec7635cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439155/ERR1439155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439155/ERR1439155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439155/PHESPV0366.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439155/PHESPV0366.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439155/ERR1439155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439155/ERR1439155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439155/PHESPV0366.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439155/PHESPV0366.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97821844;97496085 ERS1194534 ERX1509533 GENOMIC 329602197 2016-06-10 PHESPV0366 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439155/PHESPV0366.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439155/PHESPV0366.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439155 PHESPV0366 ERR1439162 PHESPV0373 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439162 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439162 63980b3bb9db81e91df0f397e77b97c5;6b4a95790dd324e60bcef1e476bd656f 1313 94596717 a0644fcb09a9a2412d55fd3a86c10169;4c2aa14428ce50bc942c4808d0ff62ec SAMEA4023431 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439162/ERR1439162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439162/ERR1439162_2.fastq.gz 1168381 WGS PHESPV0373 RANDOM 63401920;66155289 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 97f5e47029d47e39b7f881fe5dea6476 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439162/ERR1439162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439162/ERR1439162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439162/PHESPV0373.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439162/PHESPV0373.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439162/ERR1439162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439162/ERR1439162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439162/PHESPV0373.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439162/PHESPV0373.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67436568;70140321 ERS1194541 ERX1509540 GENOMIC 228782542 2016-06-10 PHESPV0373 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439162/PHESPV0373.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439162/PHESPV0373.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439162 PHESPV0373 ERR1439170 PHESPV0381 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439170 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439170 9ed2e801999fdf709838954987db9cb1;83c081dbf1b4819419f2c560ebf32ac2 1313 104347588 09cbab31045f8c220266cb50a0da7141;413b68c5293a8d5218bfe8f7dbdb1bd2 SAMEA4023439 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439170/ERR1439170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439170/ERR1439170_2.fastq.gz 1297040 WGS PHESPV0381 RANDOM 71575412;71638379 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17dca57f26b9af503457b8052bd684eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439170/ERR1439170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439170/ERR1439170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439170/PHESPV0381.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439170/PHESPV0381.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439170/ERR1439170_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439170/ERR1439170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439170/PHESPV0381.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439170/PHESPV0381.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75980372;76035459 ERS1194549 ERX1509548 GENOMIC 254667496 2016-06-10 PHESPV0381 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439170/PHESPV0381.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439170/PHESPV0381.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439170 PHESPV0381 ERR1439167 PHESPV0378 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439167 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439167 189543b60ee0dc12033b6cc68f02e038;c065e9c5f066caf8ac1cd4ea3f0c746d 1313 118474630 c762cddd551f21b102dc3189bffa98b3;f2a4a83dc22a3c16e9ec5d54bf8d2a95 SAMEA4023436 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439167/ERR1439167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439167/ERR1439167_2.fastq.gz 1483219 WGS PHESPV0378 RANDOM 81104740;80557597 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d09fd9008f7b01eeca5ada3d37334d8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439167/ERR1439167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439167/ERR1439167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439167/PHESPV0378.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439167/PHESPV0378.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439167/ERR1439167_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439167/ERR1439167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439167/PHESPV0378.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439167/PHESPV0378.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86027515;85473153 ERS1194546 ERX1509545 GENOMIC 291253949 2016-06-10 PHESPV0378 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439167/PHESPV0378.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439167/PHESPV0378.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439167 PHESPV0378 ERR1439172 PHESPV0383 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439172 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439172 def16f4546f182674d9bfb7a113770ca;ed658f5aaee549abd073661e30372481 1313 87451375 a5cf67b142aa4d9a751bd66f6fcd1853;950bd7990c2dab31d70d2836620568ee SAMEA4023441 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439172/ERR1439172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439172/ERR1439172_2.fastq.gz 1077885 WGS PHESPV0383 RANDOM 57932517;61158380 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b464cd847fcd91f7bed6d17982bc6cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439172/ERR1439172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439172/ERR1439172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439172/PHESPV0383.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439172/PHESPV0383.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439172/ERR1439172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439172/ERR1439172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439172/PHESPV0383.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439172/PHESPV0383.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61695092;64860555 ERS1194551 ERX1509550 GENOMIC 210772773 2016-06-10 PHESPV0383 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439172/PHESPV0383.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439172/PHESPV0383.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439172 PHESPV0383 ERR1439175 PHESPV0386 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439175 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439175 75770e3387f76b1f7526321f7a3d7485;c936153f19d7ec4e0c07de949c76d14c 1313 85001988 f06a5f1cd391bce323bd4fc172650285;b6c9dbe5213bbbaf45aadaac3ca01f6e SAMEA4023444 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439175/ERR1439175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439175/ERR1439175_2.fastq.gz 1048545 WGS PHESPV0386 RANDOM 57767566;58693368 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a4d9859cef5c537ce3574d41095070e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439175/ERR1439175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439175/ERR1439175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439175/PHESPV0386.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439175/PHESPV0386.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439175/ERR1439175_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439175/ERR1439175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439175/PHESPV0386.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439175/PHESPV0386.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61415742;62330766 ERS1194554 ERX1509553 GENOMIC 205638166 2016-06-10 PHESPV0386 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439175/PHESPV0386.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439175/PHESPV0386.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439175 PHESPV0386 ERR1439183 PHESPV0394 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439183 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439183 bc79d48d7bfe908f9c5af46e0f0dbc4e;956832c749bb104f7aa2f560e49115ad 1313 127710566 877d20a0ae589721af57e765012b219e;96fc32e919ab9224f27dc0612cb203af SAMEA4023452 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439183/ERR1439183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439183/ERR1439183_2.fastq.gz 1602091 WGS PHESPV0394 RANDOM 87776732;87373048 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 57ed1907abe72ef4ed6ef205f7a20e97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439183/ERR1439183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439183/ERR1439183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439183/PHESPV0394.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439183/PHESPV0394.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439183/ERR1439183_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439183/ERR1439183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439183/PHESPV0394.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439183/PHESPV0394.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93055483;92644346 ERS1194562 ERX1509561 GENOMIC 314753701 2016-06-10 PHESPV0394 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439183/PHESPV0394.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439183/PHESPV0394.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439183 PHESPV0394 ERR1439189 PHESPV0400 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439189 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439189 9303d7f4c447930b7cbeb0730105a430;086b1c790b3c74138061472f6f91d6d1 1313 138736608 c19434424a107f8ff4364f8f5516eeb9;598654b42a24b411f34ecb4f9342ecb1 SAMEA4023458 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439189/ERR1439189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439189/ERR1439189_2.fastq.gz 1721337 WGS PHESPV0400 RANDOM 95015319;95552116 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 475bc65fdf7cc3ceb0a1a12c159aee10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439189/ERR1439189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439189/ERR1439189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439189/PHESPV0400.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439189/PHESPV0400.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439189/ERR1439189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439189/ERR1439189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439189/PHESPV0400.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439189/PHESPV0400.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100661848;101198851 ERS1194568 ERX1509567 GENOMIC 337942733 2016-06-10 PHESPV0400 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439189/PHESPV0400.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439189/PHESPV0400.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439189 PHESPV0400 ERR1439185 PHESPV0396 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439185 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439185 d049b983521d197298a2de40d76e5a45;5aa10fed1c78375a6a1bcea9e5c347d6 1313 91683555 3a54ad369426ad2929f367e2ca87f008;ff7e38c198ebb88309a0adb38f3b2c94 SAMEA4023454 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439185/ERR1439185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439185/ERR1439185_2.fastq.gz 1145192 WGS PHESPV0396 RANDOM 63126671;62921042 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b8ba8f0ba6c214795882c033d9243686 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439185/ERR1439185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439185/ERR1439185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439185/PHESPV0396.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439185/PHESPV0396.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439185/ERR1439185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439185/ERR1439185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439185/PHESPV0396.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439185/PHESPV0396.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67098336;66890433 ERS1194564 ERX1509563 GENOMIC 224983077 2016-06-10 PHESPV0396 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439185/PHESPV0396.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439185/PHESPV0396.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439185 PHESPV0396 ERR1439190 PHESPV0401 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439190 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439190 c42c6c8eac37efd2dc6f50423e04917a;077b0d036297e264d9fb61418e828a37 1313 118990181 5045271160c482217a98b59a4e8d070f;c830095a17dc940b55ff7187ad2a36ff SAMEA4023459 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439190/ERR1439190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439190/ERR1439190_2.fastq.gz 1477926 WGS PHESPV0401 RANDOM 81647650;80989937 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c8bde0cacbf7ba47a00d0d20f35363c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439190/ERR1439190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439190/ERR1439190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439190/PHESPV0401.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439190/PHESPV0401.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439190/ERR1439190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439190/ERR1439190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439190/PHESPV0401.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439190/PHESPV0401.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86572994;85906989 ERS1194569 ERX1509568 GENOMIC 289981894 2016-06-10 PHESPV0401 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439190/PHESPV0401.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439190/PHESPV0401.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439190 PHESPV0401 ERR1439193 PHESPV0404 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439193 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439193 f52841c8370303a6b1c54336274c6654;9e772dfe479674da0b4f73e906163681 1313 84248862 dd0d8d414b8856fa32411fdb74fde1bf;3a6b45f381600e1026a9f76df4aecf6f SAMEA4023462 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439193/ERR1439193_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439193/ERR1439193_2.fastq.gz 1019214 WGS PHESPV0404 RANDOM 56591764;58251485 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 87f4b9aee02c6d4cae7937d5b1d7b91b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439193/ERR1439193_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439193/ERR1439193_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439193/PHESPV0404.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439193/PHESPV0404.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439193/ERR1439193_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439193/ERR1439193_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439193/PHESPV0404.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439193/PHESPV0404.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60160332;61810538 ERS1194572 ERX1509571 GENOMIC 199408961 2016-06-10 PHESPV0404 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439193/PHESPV0404.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439193/PHESPV0404.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439193 PHESPV0404 ERR1439199 PHESPV0410 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439199 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439199 5b8428d2992590ba0d1bd663cb9743d9;8b34aa40c11a95a06b0f8cbdd530c942 1313 102744256 c94953dc572e9186ee209ca16d11a9da;9449134cc7800ef205c1795977e1f39c SAMEA4023468 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439199/ERR1439199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439199/ERR1439199_2.fastq.gz 1277680 WGS PHESPV0410 RANDOM 70287608;70543323 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3958a2efabd70ba307f23394b79b3988 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439199/ERR1439199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439199/ERR1439199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439199/PHESPV0410.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439199/PHESPV0410.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439199/ERR1439199_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439199/ERR1439199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439199/PHESPV0410.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439199/PHESPV0410.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74636986;74886934 ERS1194578 ERX1509577 GENOMIC 250845130 2016-06-10 PHESPV0410 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439199/PHESPV0410.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439199/PHESPV0410.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439199 PHESPV0410 ERR1439203 PHESPV0414 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439203 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439203 f39a567a1c244349a07aafbf1a446fb0;e84b036e22fdeb149e4b11c917abfe49 1313 96504309 109b43b99af1c1dde4d282b9517bc8e5;50de2d1fcc3261cee86abbdfa32ba4b5 SAMEA4023472 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439203/ERR1439203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439203/ERR1439203_2.fastq.gz 1187197 WGS PHESPV0414 RANDOM 65638741;66377716 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2b7e2962afc3837036fe3d65c04d4720 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439203/ERR1439203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439203/ERR1439203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439203/PHESPV0414.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439203/PHESPV0414.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439203/ERR1439203_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439203/ERR1439203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439203/PHESPV0414.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439203/PHESPV0414.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69704663;70436386 ERS1194582 ERX1509581 GENOMIC 232743461 2016-06-10 PHESPV0414 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439203/PHESPV0414.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439203/PHESPV0414.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439203 PHESPV0414 ERR1439214 PHESPV0425 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439214 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439214 90147371a93ba0aaed03782f097cd00f;fd4506c9b8f3d5a640e501e470299739 1313 113036781 9dedb1a40538db89a08dd29ad946dea4;089bc85e826e777812aab72c8a06e4b3 SAMEA4023483 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439214/ERR1439214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439214/ERR1439214_2.fastq.gz 1368900 WGS PHESPV0425 RANDOM 75277398;79096519 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8c44a755257dc633682d3c9481b3788b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439214/ERR1439214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439214/ERR1439214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439214/PHESPV0425.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439214/PHESPV0425.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439214/ERR1439214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439214/ERR1439214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439214/PHESPV0425.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439214/PHESPV0425.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79899807;83707998 ERS1194593 ERX1509592 GENOMIC 267578971 2016-06-10 PHESPV0425 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439214/PHESPV0425.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439214/PHESPV0425.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439214 PHESPV0425 ERR1439207 PHESPV0418 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439207 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439207 ee26a10dc869bc285a2db6beb20dbbe5;10728d7a8f9a54a13b25f28d6002e5df 1313 80339162 05513e3811607b0e7e77f3e449d3f23c;f1b33db2876e4d3d0e129f2725f5ea93 SAMEA4023476 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439207/ERR1439207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439207/ERR1439207_2.fastq.gz 985407 WGS PHESPV0418 RANDOM 54305828;55528740 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c48bb95f0ca54b0de2736a64d7c73fb7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439207/ERR1439207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439207/ERR1439207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439207/PHESPV0418.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439207/PHESPV0418.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439207/ERR1439207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439207/ERR1439207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439207/PHESPV0418.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439207/PHESPV0418.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57771197;58985294 ERS1194586 ERX1509585 GENOMIC 193085772 2016-06-10 PHESPV0418 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439207/PHESPV0418.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439207/PHESPV0418.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439207 PHESPV0418 ERR1439211 PHESPV0422 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439211 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439211 d1d7c649ac4f4e45aa60174d15160dcc;5adfb88ef83cdf9afb35a2b51b1410a6 1313 108730068 07de458e8c12cec2aa94f3c48e7d4691;a1f2e3ed8544502bdf8305c3c1e3e1d9 SAMEA4023480 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439211/ERR1439211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439211/ERR1439211_2.fastq.gz 1307404 WGS PHESPV0422 RANDOM 72290012;75153827 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a71bf5a4716249787c45a6e240c6a97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439211/ERR1439211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439211/ERR1439211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439211/PHESPV0422.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439211/PHESPV0422.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439211/ERR1439211_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439211/ERR1439211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439211/PHESPV0422.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439211/PHESPV0422.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76687235;79532648 ERS1194590 ERX1509589 GENOMIC 255167098 2016-06-10 PHESPV0422 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439211/PHESPV0422.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439211/PHESPV0422.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439211 PHESPV0422 ERR1439208 PHESPV0419 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439208 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439208 d103fc795036371c4f313271208c23af;ef1ad527391a00bda7a2d2c8f420852d 1313 102211040 4ce83bb8bcf023af87d63bca6b62c264;d4935acaaec71405a7d375816dcc183e SAMEA4023477 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439208/ERR1439208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439208/ERR1439208_2.fastq.gz 1273211 WGS PHESPV0419 RANDOM 69844292;70026266 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 016ddd0fab151e3c2d2a07d8a7f4cd5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439208/ERR1439208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439208/ERR1439208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439208/PHESPV0419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439208/PHESPV0419.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439208/ERR1439208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439208/ERR1439208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439208/PHESPV0419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439208/PHESPV0419.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74194684;74375409 ERS1194587 ERX1509586 GENOMIC 249990217 2016-06-10 PHESPV0419 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439208/PHESPV0419.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439208/PHESPV0419.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439208 PHESPV0419 ERR1439215 PHESPV0426 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439215 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439215 9deb34a231208e1603f8ad8c1c9530ba;c4cae27b2568865fdbfbf2a6b33438bf 1313 131764541 a1f992d490fa0e9c17dc78f5ee315d76;6cd1ded4456a559068075da1c1e343c6 SAMEA4023484 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439215/ERR1439215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439215/ERR1439215_2.fastq.gz 1594076 WGS PHESPV0426 RANDOM 87059092;91071226 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b48944ffdebaab921d9301fecbf8424 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439215/ERR1439215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439215/ERR1439215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439215/PHESPV0426.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439215/PHESPV0426.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439215/ERR1439215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439215/ERR1439215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439215/PHESPV0426.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439215/PHESPV0426.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92328425;96341949 ERS1194594 ERX1509593 GENOMIC 311356968 2016-06-10 PHESPV0426 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439215/PHESPV0426.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439215/PHESPV0426.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439215 PHESPV0426 ERR1439218 PHESPV0429 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439218 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439218 2c7b2b1aed5e098f8243fd0215162bfc;2d186a72d45af20bbb981557a3f30476 1313 144610061 4c262d6a6a4aee826f468613082df629;18501cf48c9d93360f07f231b6204062 SAMEA4023487 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439218/ERR1439218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439218/ERR1439218_2.fastq.gz 1782755 WGS PHESPV0429 RANDOM 98443493;99383718 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c446f4319249928e48ad3d56fb4c1d58 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439218/ERR1439218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439218/ERR1439218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439218/PHESPV0429.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439218/PHESPV0429.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439218/ERR1439218_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439218/ERR1439218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439218/PHESPV0429.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439218/PHESPV0429.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104226002;105166151 ERS1194597 ERX1509596 GENOMIC 349522239 2016-06-10 PHESPV0429 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439218/PHESPV0429.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439218/PHESPV0429.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439218 PHESPV0429 ERR1439223 PHESPV0434 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439223 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439223 744e6edcbd8d9cb421c4d88e05721b41;1cda978fdfee5c35ee205de8177658be 1313 111061308 684683eb920d673fa3912ca90f7a8811;d98f003cdff40321ab760883215678b1 SAMEA4023492 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439223/ERR1439223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439223/ERR1439223_2.fastq.gz 1370172 WGS PHESPV0434 RANDOM 75121119;75733683 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6bcc46ef6f7c5f319295de0e0f72e18b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439223/ERR1439223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439223/ERR1439223_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439223/PHESPV0434.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439223/PHESPV0434.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439223/ERR1439223_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439223/ERR1439223_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439223/PHESPV0434.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439223/PHESPV0434.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79719551;80324617 ERS1194602 ERX1509601 GENOMIC 268407189 2016-06-10 PHESPV0434 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439223/PHESPV0434.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439223/PHESPV0434.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439223 PHESPV0434 ERR1439220 PHESPV0431 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439220 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439220 85631a2e91959fbd7f0f9aff390325e0;96f488763615e3ac602d60642df0c777 1313 156085571 2650a42616522c03bea7116b18ab595c;2cd527920f79f6c95988522f2bbe4b52 SAMEA4023489 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439220/ERR1439220_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439220/ERR1439220_2.fastq.gz 1927857 WGS PHESPV0431 RANDOM 105407470;105891119 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fced837283a9ccbb4fb529d71d569d24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439220/ERR1439220_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439220/ERR1439220_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439220/PHESPV0431.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439220/PHESPV0431.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439220/ERR1439220_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439220/ERR1439220_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439220/PHESPV0431.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439220/PHESPV0431.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111569611;112045002 ERS1194599 ERX1509598 GENOMIC 377502816 2016-06-10 PHESPV0431 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439220/PHESPV0431.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439220/PHESPV0431.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439220 PHESPV0431 ERR1439219 PHESPV0430 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439219 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439219 c90ace4dd69239197b55350fc5048342;8e70018eeaff0caa063a3b128af43a92 1313 135029810 dc2c0f938cb2e8e0c7ba3575c24a034c;e2e7e3579d395cb9aee71fa081d6d02b SAMEA4023488 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439219/ERR1439219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439219/ERR1439219_2.fastq.gz 1665975 WGS PHESPV0430 RANDOM 91009892;91623318 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8565c263ebd0e7cf77b3dbf585460a98 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439219/ERR1439219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439219/ERR1439219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439219/PHESPV0430.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439219/PHESPV0430.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439219/ERR1439219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439219/ERR1439219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439219/PHESPV0430.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439219/PHESPV0430.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96426453;97021080 ERS1194598 ERX1509597 GENOMIC 326211906 2016-06-10 PHESPV0430 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439219/PHESPV0430.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439219/PHESPV0430.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439219 PHESPV0430 ERR1439225 PHESPV0436 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439225 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439225 0b3607d7dafe6995a7b90610da98ce53;5b593dc252b141d7256bb0f6bbb0251e 1313 194638250 5347e6a19a74fb2adbe6dc1d48486ca7;fba71bed3d8993b02c9af875671a6faa SAMEA4023494 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439225/ERR1439225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439225/ERR1439225_2.fastq.gz 2370331 WGS PHESPV0436 RANDOM 129705620;132807823 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f17c2430badc20c405c000a1962a8ba7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439225/ERR1439225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439225/ERR1439225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439225/PHESPV0436.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439225/PHESPV0436.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439225/ERR1439225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439225/ERR1439225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439225/PHESPV0436.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439225/PHESPV0436.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136987513;140065475 ERS1194604 ERX1509603 GENOMIC 463067034 2016-06-10 PHESPV0436 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439225/PHESPV0436.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439225/PHESPV0436.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439225 PHESPV0436 ERR1439230 PHESPV0441 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439230 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439230 692bf96ced71a0a22180034c33b895d6;c0b691e58642b3cf73640b3078920c74 1313 117534461 9688a34cd578910edfd96dbf522b055a;2006e15c59e0d25c0b63e60b9c7e1744 SAMEA4023499 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439230/ERR1439230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439230/ERR1439230_2.fastq.gz 1425066 WGS PHESPV0441 RANDOM 78965408;81875214 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 40adf56be987df1c52cb381c248d459f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439230/ERR1439230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439230/ERR1439230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439230/PHESPV0441.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439230/PHESPV0441.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439230/ERR1439230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439230/ERR1439230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439230/PHESPV0441.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439230/PHESPV0441.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83738758;86657656 ERS1194609 ERX1509608 GENOMIC 278764019 2016-06-10 PHESPV0441 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439230/PHESPV0441.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439230/PHESPV0441.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439230 PHESPV0441 ERR1439232 PHESPV0443 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439232 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439232 5944225fa29f4b201ce34659060ed045;11f802ef628c8c256c431501897e6881 1313 129817347 426f5ff525a3d277b0007546927df4a8;88343e7da54f0729184dc9f5c99fff32 SAMEA4023501 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439232/ERR1439232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439232/ERR1439232_2.fastq.gz 1591345 WGS PHESPV0443 RANDOM 88282148;89069312 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42f4eedb108bc6e9177cc43173101c77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439232/ERR1439232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439232/ERR1439232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439232/PHESPV0443.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439232/PHESPV0443.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439232/ERR1439232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439232/ERR1439232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439232/PHESPV0443.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439232/PHESPV0443.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93522536;94307563 ERS1194611 ERX1509610 GENOMIC 311677479 2016-06-10 PHESPV0443 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439232/PHESPV0443.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439232/PHESPV0443.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439232 PHESPV0443 ERR1439238 PHESPV0449 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439238 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439238 410119ff26c179a74c28956a7b99b8ab;4c3d0696282c9c134f5a3f833a2eefa5 1313 89553197 6dd672fd694fa3c9e31a6f87e0bd14db;a85b20a5341670f74607bf64e2bb7d84 SAMEA4023507 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439238/ERR1439238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439238/ERR1439238_2.fastq.gz 1109411 WGS PHESPV0449 RANDOM 59595473;63135478 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7da7fc85f708f186daac01ed9d136cdc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439238/ERR1439238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439238/ERR1439238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439238/PHESPV0449.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439238/PHESPV0449.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439238/ERR1439238_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439238/ERR1439238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439238/PHESPV0449.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439238/PHESPV0449.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63443283;66931373 ERS1194617 ERX1509616 GENOMIC 216987503 2016-06-10 PHESPV0449 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439238/PHESPV0449.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439238/PHESPV0449.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439238 PHESPV0449 ERR1439233 PHESPV0444 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439233 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439233 5d690389cb84f62b1c8efb43ca58dcb3;ea01d9aa9728de2f7f03f27847b58db9 1313 145672483 5a02ea670ac691163524deebb1e98cdc;4050b1e019ef2e9316d58dc2b54db1fb SAMEA4023502 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439233/ERR1439233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439233/ERR1439233_2.fastq.gz 1796377 WGS PHESPV0444 RANDOM 98749870;99246037 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e9ad2c8a369f24cc88cb1a4e953f497b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439233/ERR1439233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439233/ERR1439233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439233/PHESPV0444.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439233/PHESPV0444.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439233/ERR1439233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439233/ERR1439233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439233/PHESPV0444.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439233/PHESPV0444.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104560397;105052779 ERS1194612 ERX1509611 GENOMIC 351857049 2016-06-10 PHESPV0444 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439233/PHESPV0444.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439233/PHESPV0444.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439233 PHESPV0444 ERR1439240 PHESPV0451 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439240 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439240 c6a61138961ac5b13df9b9d4e46442c8;b654b647656bf2b062953561bc5a2270 1313 86558325 c2d03508609e2f72f6117c91e41566f7;82f85299a06d80e142ed9441a01ff1cf SAMEA4023509 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439240/ERR1439240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439240/ERR1439240_2.fastq.gz 1049225 WGS PHESPV0451 RANDOM 58033852;60411284 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 11f4267ffe530b668421b93ea836db4e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439240/ERR1439240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439240/ERR1439240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439240/PHESPV0451.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439240/PHESPV0451.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439240/ERR1439240_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439240/ERR1439240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439240/PHESPV0451.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439240/PHESPV0451.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61697704;64064742 ERS1194619 ERX1509618 GENOMIC 205109981 2016-06-10 PHESPV0451 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439240/PHESPV0451.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439240/PHESPV0451.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439240 PHESPV0451 ERR1439248 PHESPV0459 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439248 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439248 62e2e3f8292d85a2ceec2e63a0a45be6;a74bac1baf3822373969b208d3b9b721 1313 130684501 c9435a35daa9b5b88069dd6081b00bd0;87b6c77e18afb36e3c4d55fe1e507e4a SAMEA4023517 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439248/ERR1439248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439248/ERR1439248_2.fastq.gz 1593622 WGS PHESPV0459 RANDOM 87742450;90376407 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5cebc6605b2f392e1b96c86325268b12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439248/ERR1439248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439248/ERR1439248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439248/PHESPV0459.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439248/PHESPV0459.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439248/ERR1439248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439248/ERR1439248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439248/PHESPV0459.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439248/PHESPV0459.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92998690;95651785 ERS1194627 ERX1509626 GENOMIC 311649848 2016-06-10 PHESPV0459 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439248/PHESPV0459.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439248/PHESPV0459.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439248 PHESPV0459 ERR1439256 PHESPV0467 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439256 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439256 0345172d63b9305d5420f7e04fe22ef7;ed01544a7be9ddc6e1a58a89eb27142d 1313 116939785 bc15ba27287a1fe60adec5894da662b9;202fb75d149741cdf4a79071963406fd SAMEA4023525 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439256/ERR1439256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439256/ERR1439256_2.fastq.gz 1454518 WGS PHESPV0467 RANDOM 77917073;81612387 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5ec5adf9c738a11ae551c51b401a149 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439256/ERR1439256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439256/ERR1439256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439256/PHESPV0467.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439256/PHESPV0467.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439256/ERR1439256_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439256/ERR1439256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439256/PHESPV0467.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439256/PHESPV0467.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82795769;86442464 ERS1194635 ERX1509634 GENOMIC 284927463 2016-06-10 PHESPV0467 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439256/PHESPV0467.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439256/PHESPV0467.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439256 PHESPV0467 ERR1439258 PHESPV0469 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439258 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439258 faf9b7671f79aadee65c2766c73adc53;63330c01a75394d5ceb5194f4f406380 1313 124449961 6662740e722a36859284fd299be1b6cb;b98b0855a5c30ac05728f4befb6d447a SAMEA4023527 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439258/ERR1439258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439258/ERR1439258_2.fastq.gz 1547333 WGS PHESPV0469 RANDOM 83271033;87539537 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69b1a801ad7468c47c0d02e54a1603d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439258/ERR1439258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439258/ERR1439258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439258/PHESPV0469.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439258/PHESPV0469.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439258/ERR1439258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439258/ERR1439258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439258/PHESPV0469.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439258/PHESPV0469.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88433923;92662328 ERS1194637 ERX1509636 GENOMIC 303323650 2016-06-10 PHESPV0469 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439258/PHESPV0469.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439258/PHESPV0469.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439258 PHESPV0469 ERR1439257 PHESPV0468 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439257 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439257 af140af94a89a47c87ec2b01315ebd34;92a968f4a18ef6cbcd419e8bc5e840d5 1313 80196758 d10be633e4eaf824cdc510b91f36eaa4;d1fc3799ab03bd601ce942c969b2ddc8 SAMEA4023526 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439257/ERR1439257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439257/ERR1439257_2.fastq.gz 998311 WGS PHESPV0468 RANDOM 53622985;56377989 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff789df4d1a75f12b41596546f038feb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439257/ERR1439257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439257/ERR1439257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439257/PHESPV0468.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439257/PHESPV0468.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439257/ERR1439257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439257/ERR1439257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439257/PHESPV0468.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439257/PHESPV0468.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57143957;59843635 ERS1194636 ERX1509635 GENOMIC 195632527 2016-06-10 PHESPV0468 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439257/PHESPV0468.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439257/PHESPV0468.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439257 PHESPV0468 ERR1439260 PHESPV0471 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439260 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439260 7491eed6924eaf3c7d760996484ddc7b;ea9bb94bce3d4d51a28bdfaca39a512a 1313 108624524 fb459937b66acbb7a288e460bde0b0b1;bd1620b80e8075c87aab99cfd3ff85b2 SAMEA4023529 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439260/ERR1439260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439260/ERR1439260_2.fastq.gz 1320735 WGS PHESPV0471 RANDOM 72872463;75436442 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e1c2a8909e2a55a51dd0a62528a30aec ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439260/ERR1439260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439260/ERR1439260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439260/PHESPV0471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439260/PHESPV0471.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439260/ERR1439260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439260/ERR1439260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439260/PHESPV0471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439260/PHESPV0471.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77324148;79885624 ERS1194639 ERX1509638 GENOMIC 258252255 2016-06-10 PHESPV0471 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439260/PHESPV0471.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439260/PHESPV0471.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439260 PHESPV0471 ERR1439264 PHESPV0475 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439264 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439264 441fec137628640734277b73512d7d77;c0b235f337599f22c5375884e6b5ce8f 1313 117136610 36aa014713a98fc21e8eee9a462bd766;3348265a2da20156aa9b95d42cacae53 SAMEA4023533 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439264/ERR1439264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439264/ERR1439264_2.fastq.gz 1428431 WGS PHESPV0475 RANDOM 78649626;81132598 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d8ce1e2d8902df10e3bb9795bff305e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439264/ERR1439264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439264/ERR1439264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439264/PHESPV0475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439264/PHESPV0475.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439264/ERR1439264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439264/ERR1439264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439264/PHESPV0475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439264/PHESPV0475.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83438409;85927312 ERS1194643 ERX1509642 GENOMIC 279493394 2016-06-10 PHESPV0475 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439264/PHESPV0475.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439264/PHESPV0475.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439264 PHESPV0475 ERR1439267 PHESPV0478 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439267 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439267 5c4c1ac35f52463d81441dc2bdbf6b2c;def8bdc792cbad4604bf7aebbd99874d 1313 118270748 4975e25346d5ba7502ab209051799b20;18f75d38545c820886e404fdb2e3d434 SAMEA4023536 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439267/ERR1439267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439267/ERR1439267_2.fastq.gz 1421419 WGS PHESPV0478 RANDOM 77910179;81560506 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a5528e3529475d2b60ba5b83ad5ca4f4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439267/ERR1439267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439267/ERR1439267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439267/PHESPV0478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439267/PHESPV0478.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439267/ERR1439267_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439267/ERR1439267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439267/PHESPV0478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439267/PHESPV0478.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82624200;86257543 ERS1194646 ERX1509645 GENOMIC 276983311 2016-06-10 PHESPV0478 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439267/PHESPV0478.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439267/PHESPV0478.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439267 PHESPV0478 ERR1439269 PHESPV0480 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439269 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439269 89d9f584c49d9e9a0115da385fec7747;1c4184c1401b09c101a81615746a3ca9 1313 137762526 ce352ae148eec83a9d31e5a677a5fe3c;37b97fabf62de254a8b0b3becbbce79f SAMEA4023538 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439269/ERR1439269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439269/ERR1439269_2.fastq.gz 1710620 WGS PHESPV0480 RANDOM 91828897;96198366 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline df3496a19f18a189f99579b23bd2f098 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439269/ERR1439269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439269/ERR1439269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439269/PHESPV0480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439269/PHESPV0480.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439269/ERR1439269_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439269/ERR1439269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439269/PHESPV0480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439269/PHESPV0480.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97430179;101751664 ERS1194648 ERX1509647 GENOMIC 334938101 2016-06-10 PHESPV0480 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439269/PHESPV0480.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439269/PHESPV0480.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439269 PHESPV0480 ERR1439271 PHESPV0482 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439271 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439271 e560c3c16d800b51d9373d67fad1a043;92ed537b08ef130dc66dc0ef0a8e951a 1313 96879159 83ebac6fb17e6ad62a6a1c8663c2bfb6;54d59b778abbe4aaca7bac0ef06fa3ea SAMEA4023540 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439271/ERR1439271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439271/ERR1439271_2.fastq.gz 1173550 WGS PHESPV0482 RANDOM 64952044;66990079 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ce11f574af765b6cf1c98f821eba8ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439271/ERR1439271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439271/ERR1439271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439271/PHESPV0482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439271/PHESPV0482.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439271/ERR1439271_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439271/ERR1439271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439271/PHESPV0482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439271/PHESPV0482.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68962126;70999415 ERS1194650 ERX1509649 GENOMIC 229405174 2016-06-10 PHESPV0482 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439271/PHESPV0482.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439271/PHESPV0482.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439271 PHESPV0482 ERR1439284 PHESPV0495 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439284 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439284 c5de1232cf6ae450aeeb92df436932b8;93c6f7a1a62e122dc499ff91d174e8cf 1313 93472209 1d8527df4dfd2855e3361cf5ab8d279c;4965608a22ae4f7d29d303c5c51a8fe1 SAMEA4023553 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439284/ERR1439284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439284/ERR1439284_2.fastq.gz 1162416 WGS PHESPV0495 RANDOM 63853569;64098634 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 491c966b28b935cdc0ea69df420c0855 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439284/ERR1439284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439284/ERR1439284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439284/PHESPV0495.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439284/PHESPV0495.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439284/ERR1439284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439284/ERR1439284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439284/PHESPV0495.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439284/PHESPV0495.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67819035;68056676 ERS1194663 ERX1509662 GENOMIC 228032700 2016-06-10 PHESPV0495 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439284/PHESPV0495.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439284/PHESPV0495.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439284 PHESPV0495 ERR1439276 PHESPV0487 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439276 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439276 a782b39e3d202fd433fadffd44e676cd;864ce4a8363aea88c09c6bcafe7ecac0 1313 190912423 a93e673e76dffaa886909899847e3326;f7a4d00341581843f3a466d522a9fe54 SAMEA4023545 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439276/ERR1439276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439276/ERR1439276_2.fastq.gz 2372904 WGS PHESPV0487 RANDOM 130922890;131359451 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b4b89bcf3f47a97bd036ef3bf30fe803 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439276/ERR1439276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439276/ERR1439276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439276/PHESPV0487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439276/PHESPV0487.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439276/ERR1439276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439276/ERR1439276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439276/PHESPV0487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439276/PHESPV0487.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138295660;138741259 ERS1194655 ERX1509654 GENOMIC 465830231 2016-06-10 PHESPV0487 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439276/PHESPV0487.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439276/PHESPV0487.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439276 PHESPV0487 ERR1439272 PHESPV0483 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439272 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439272 d43451d06f768ce8a26d25d134b9aa84;73938a7e6b6d8cdf3fe44f2b46f47b29 1313 114185172 849962a42b801cf635e23f7a59e0c8cb;24db91382b38b17478f84fe69ce61477 SAMEA4023541 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439272/ERR1439272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439272/ERR1439272_2.fastq.gz 1390541 WGS PHESPV0483 RANDOM 76055010;77946809 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ecdb11bbd735a61e7f3ec9b01b7077d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439272/ERR1439272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439272/ERR1439272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439272/PHESPV0483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439272/PHESPV0483.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439272/ERR1439272_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439272/ERR1439272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439272/PHESPV0483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439272/PHESPV0483.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80672137;82565009 ERS1194651 ERX1509650 GENOMIC 271728120 2016-06-10 PHESPV0483 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439272/PHESPV0483.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439272/PHESPV0483.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439272 PHESPV0483 ERR1439281 PHESPV0492 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439281 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439281 3ba144d468f2e8edc214c0ecddf116a6;89f5902553bfd6862f8b8e48f620314d 1313 135590253 a1bbadf9e40cb24c7bcac76b3b07a13b;020029034b55eed5443db03dbe07d4e0 SAMEA4023550 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439281/ERR1439281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439281/ERR1439281_2.fastq.gz 1670652 WGS PHESPV0492 RANDOM 89149758;95098529 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6bd7aa1ccaa3e6e093c33e4074548322 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439281/ERR1439281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439281/ERR1439281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439281/PHESPV0492.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439281/PHESPV0492.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439281/ERR1439281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439281/ERR1439281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439281/PHESPV0492.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439281/PHESPV0492.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94624237;100513881 ERS1194660 ERX1509659 GENOMIC 326420565 2016-06-10 PHESPV0492 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439281/PHESPV0492.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439281/PHESPV0492.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439281 PHESPV0492 ERR1439286 PHESPV0497 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439286 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439286 629dc73ef042a9e25b6c963a588de177;15fbbc4a937fed590ad87bdcc9e74b9b 1313 119646314 2e341513ce8bbf56a8b627366e840792;1efce55f721a63c1370f8f9ad444377f SAMEA4023555 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439286/ERR1439286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439286/ERR1439286_2.fastq.gz 1492829 WGS PHESPV0497 RANDOM 79473705;83128574 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ccd461c53e341828acc9084179f0338 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439286/ERR1439286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439286/ERR1439286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439286/PHESPV0497.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439286/PHESPV0497.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439286/ERR1439286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439286/ERR1439286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439286/PHESPV0497.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439286/PHESPV0497.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84459681;88064056 ERS1194665 ERX1509664 GENOMIC 292578109 2016-06-10 PHESPV0497 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439286/PHESPV0497.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439286/PHESPV0497.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439286 PHESPV0497 ERR1439288 PHESPV0499 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439288 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439288 02aa3eb9166d2e633d6d3d01c1f35ba7;db4063ebebbc066487b4765bfd08b55e 1313 127683383 1218f37183f78731871c495e91956e47;1eb526fddf45ec5d4892c0caf95129e3 SAMEA4023557 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439288/ERR1439288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439288/ERR1439288_2.fastq.gz 1584699 WGS PHESPV0499 RANDOM 87354274;87873890 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aded3ba0e415bc10cc80b8c698d0ab88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439288/ERR1439288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439288/ERR1439288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439288/PHESPV0499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439288/PHESPV0499.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439288/ERR1439288_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439288/ERR1439288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439288/PHESPV0499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439288/PHESPV0499.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92587563;93104807 ERS1194667 ERX1509666 GENOMIC 310863849 2016-06-10 PHESPV0499 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439288/PHESPV0499.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439288/PHESPV0499.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439288 PHESPV0499 ERR1439293 PHESPV0504 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439293 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439293 09b412349a30a06a356f2faff56d42e6;0750026772117e617690155d53cda419 1313 140621071 e71cf9be4ddb24f198e605232714b315;09d05945d690b9bf3d1acef89663c1af SAMEA4023562 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439293/ERR1439293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439293/ERR1439293_2.fastq.gz 1731747 WGS PHESPV0504 RANDOM 95048350;96372783 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5755b633a40b37388d52dc6f8f6a3297 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439293/ERR1439293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439293/ERR1439293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439293/PHESPV0504.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439293/PHESPV0504.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439293/ERR1439293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439293/ERR1439293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439293/PHESPV0504.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439293/PHESPV0504.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100653819;101978417 ERS1194672 ERX1509671 GENOMIC 339193222 2016-06-10 PHESPV0504 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439293/PHESPV0504.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439293/PHESPV0504.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439293 PHESPV0504 ERR1439301 PHESPV0512 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439301 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439301 d4630556d574ad4c223a0b83794b7923;ed636a6cc6133e4b8938761e5a13b800 1313 133478067 3fbb55a0dbe08d09742c2b625ac7828e;ba5b3011300fa125552743cd2f38bd77 SAMEA4023570 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439301/ERR1439301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439301/ERR1439301_2.fastq.gz 1658448 WGS PHESPV0512 RANDOM 90482258;90190620 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 074fc7540c6a73a68acd5146903cc076 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439301/ERR1439301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439301/ERR1439301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439301/PHESPV0512.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439301/PHESPV0512.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439301/ERR1439301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439301/ERR1439301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439301/PHESPV0512.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439301/PHESPV0512.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95865059;95570127 ERS1194680 ERX1509679 GENOMIC 324928762 2016-06-10 PHESPV0512 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439301/PHESPV0512.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439301/PHESPV0512.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439301 PHESPV0512 ERR1439296 PHESPV0507 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439296 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439296 bc2d9e00878abefa7422fc44fdf7547e;12aa88c0baca059ff3bd2abbbe560d8d 1313 140719639 5c3b60a085bb1fd0ead2784748855f4d;f63808aa34f35de841dbbc01d805bdec SAMEA4023565 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439296/ERR1439296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439296/ERR1439296_2.fastq.gz 1759973 WGS PHESPV0507 RANDOM 96197045;95810552 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f76c6dec22677e32d3ff3d9edae55df7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439296/ERR1439296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439296/ERR1439296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439296/PHESPV0507.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439296/PHESPV0507.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439296/ERR1439296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439296/ERR1439296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439296/PHESPV0507.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439296/PHESPV0507.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101933551;101540913 ERS1194675 ERX1509674 GENOMIC 345529714 2016-06-10 PHESPV0507 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439296/PHESPV0507.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439296/PHESPV0507.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439296 PHESPV0507 ERR1439303 PHESPV0514 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439303 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439303 2f7b4dd55914e4457013878354972da5;60a77a9634658bdb69011b097d3209ee 1313 98736459 1fc99d0f634107451c3231b3532f0752;e1b81c07d7c0179d834e85fae3bd2eda SAMEA4023572 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439303/ERR1439303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439303/ERR1439303_2.fastq.gz 1199688 WGS PHESPV0514 RANDOM 66210937;68959698 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3167fe981fa19d76c18be3b3c0d3dad7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439303/ERR1439303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439303/ERR1439303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439303/PHESPV0514.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439303/PHESPV0514.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439303/ERR1439303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439303/ERR1439303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439303/PHESPV0514.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439303/PHESPV0514.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70326560;73067544 ERS1194682 ERX1509681 GENOMIC 234649455 2016-06-10 PHESPV0514 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439303/PHESPV0514.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439303/PHESPV0514.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439303 PHESPV0514 ERR1439304 PHESPV0515 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439304 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439304 10514173d6e7ff84d53f5548bdd2482c;2beb57d3e820cd85e3780430efd63a70 1313 113843869 5df96408352e3e815f6ae6b28a1424be;2a6a63c7e525c1245b9d33734c08b531 SAMEA4023573 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439304/ERR1439304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439304/ERR1439304_2.fastq.gz 1387287 WGS PHESPV0515 RANDOM 76397982;79083638 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8c1d079ac2779ce2ca8226695a83fb9c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439304/ERR1439304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439304/ERR1439304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439304/PHESPV0515.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439304/PHESPV0515.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439304/ERR1439304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439304/ERR1439304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439304/PHESPV0515.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439304/PHESPV0515.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81063018;83749166 ERS1194683 ERX1509682 GENOMIC 271278811 2016-06-10 PHESPV0515 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439304/PHESPV0515.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439304/PHESPV0515.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439304 PHESPV0515 ERR1439306 PHESPV0517 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439306 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439306 a0292e6449d51afab841a9f814bc5233;743cc5beb91d4eb8b871ad809300bce8 1313 126611651 46fb45aa443b6738483c9e8f72f5f113;aa81302992ce2fef420f16eac25b230e SAMEA4023575 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439306/ERR1439306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439306/ERR1439306_2.fastq.gz 1577642 WGS PHESPV0517 RANDOM 86807758;87128146 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fac961b42a0aa5bcc5c126deb2d176de ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439306/ERR1439306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439306/ERR1439306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439306/PHESPV0517.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439306/PHESPV0517.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439306/ERR1439306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439306/ERR1439306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439306/PHESPV0517.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439306/PHESPV0517.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91999768;92327133 ERS1194685 ERX1509684 GENOMIC 309675166 2016-06-10 PHESPV0517 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439306/PHESPV0517.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439306/PHESPV0517.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439306 PHESPV0517 ERR1439305 PHESPV0516 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439305 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439305 bb9fff13b8a10099b74b710ebe6d6e4c;cf70c280559895452690c5f2e2c698cb 1313 110318327 a84e29fc7f909da75d36733ab1180fef;69f29dd16581514ec4c4c53ea1767a3c SAMEA4023574 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439305/ERR1439305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439305/ERR1439305_2.fastq.gz 1338358 WGS PHESPV0516 RANDOM 73948147;76878452 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 796bd76a91f2677154c3dc00adda1103 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439305/ERR1439305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439305/ERR1439305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439305/PHESPV0516.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439305/PHESPV0516.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439305/ERR1439305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439305/ERR1439305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439305/PHESPV0516.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439305/PHESPV0516.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78470896;81398667 ERS1194684 ERX1509683 GENOMIC 261611335 2016-06-10 PHESPV0516 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439305/PHESPV0516.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439305/PHESPV0516.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439305 PHESPV0516 ERR1439309 PHESPV0520 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439309 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439309 f29ee7ab1ff50a38b25f20852a5acb05;fb5da48632b5734a8ec4e057de8c7649 1313 120556379 a5e3839950db43a44e81ad31d527836a;46abd7986e0adbe9d2d95dd95ef729e9 SAMEA4023578 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439309/ERR1439309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439309/ERR1439309_2.fastq.gz 1464242 WGS PHESPV0520 RANDOM 80831414;83975650 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aae51be4c987ddfd6c7bf75f66210b7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439309/ERR1439309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439309/ERR1439309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439309/PHESPV0520.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439309/PHESPV0520.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439309/ERR1439309_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439309/ERR1439309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439309/PHESPV0520.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439309/PHESPV0520.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85704206;88846762 ERS1194688 ERX1509687 GENOMIC 286118616 2016-06-10 PHESPV0520 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439309/PHESPV0520.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439309/PHESPV0520.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439309 PHESPV0520 ERR1439311 PHESPV0522 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439311 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439311 2061921d61aca6d050e79b0cf08a9e9e;b7b3d1f16fbc9a86ac723b0fe80a35df 1313 127633265 fe9cf293575b5cf29ec17ca1d942c730;d37834ad2ee54018a0d432db4b6166da SAMEA4023580 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439311/ERR1439311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439311/ERR1439311_2.fastq.gz 1556895 WGS PHESPV0522 RANDOM 85486873;88369278 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b325d74c88a27ebe007bb9403c510f81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439311/ERR1439311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439311/ERR1439311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439311/PHESPV0522.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439311/PHESPV0522.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439311/ERR1439311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439311/ERR1439311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439311/PHESPV0522.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439311/PHESPV0522.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90650926;93543079 ERS1194690 ERX1509689 GENOMIC 304652115 2016-06-10 PHESPV0522 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439311/PHESPV0522.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439311/PHESPV0522.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439311 PHESPV0522 ERR1439312 PHESPV0523 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439312 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439312 9f6e6792eb756eb2933cc0198948c6a5;982de46a01bdd701c16d405891c2899e 1313 117683509 65e5d8c33233ea92f1d89ebba8ae0994;96e6c26e93316d6f82aeccb19e6ba288 SAMEA4023581 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439312/ERR1439312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439312/ERR1439312_2.fastq.gz 1417480 WGS PHESPV0523 RANDOM 77808828;81556228 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8598f6ff7ea7a282caf8316e93d1c4dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439312/ERR1439312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439312/ERR1439312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439312/PHESPV0523.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439312/PHESPV0523.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439312/ERR1439312_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439312/ERR1439312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439312/PHESPV0523.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439312/PHESPV0523.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82497349;86226195 ERS1194691 ERX1509690 GENOMIC 276419521 2016-06-10 PHESPV0523 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439312/PHESPV0523.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439312/PHESPV0523.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439312 PHESPV0523 ERR1439318 PHESPV0529 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439318 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439318 40938fe7172303e333ce86663354d2a0;3703e268112d56136c8962f81ac4fdf6 1313 106972216 61a3d686ab3c43ba1d8817397cb60910;f92e135a3b1aa85542154475fe12418b SAMEA4023587 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439318/ERR1439318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439318/ERR1439318_2.fastq.gz 1289217 WGS PHESPV0529 RANDOM 71353288;74684548 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline df9f64301c1c23c359ea1b5cfeeee950 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439318/ERR1439318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439318/ERR1439318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439318/PHESPV0529.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439318/PHESPV0529.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439318/ERR1439318_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439318/ERR1439318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439318/PHESPV0529.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439318/PHESPV0529.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75740716;79066742 ERS1194697 ERX1509696 GENOMIC 251733893 2016-06-10 PHESPV0529 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439318/PHESPV0529.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439318/PHESPV0529.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439318 PHESPV0529 ERR1439319 PHESPV0530 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439319 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439319 9c51b3942edb9176b09404c29f1edf10;33fe469b324abcba7c1152534df5164b 1313 115497498 654428ff8add7d2857771d4c6e27d43c;0cdc67b7d4b372f0f0e3fff52ffa2541 SAMEA4023588 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439319/ERR1439319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439319/ERR1439319_2.fastq.gz 1424198 WGS PHESPV0530 RANDOM 78945673;79458521 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5aea6f11f3a1a0d998c0ab15bfcbdb83 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439319/ERR1439319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439319/ERR1439319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439319/PHESPV0530.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439319/PHESPV0530.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439319/ERR1439319_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439319/ERR1439319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439319/PHESPV0530.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439319/PHESPV0530.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83720588;84242452 ERS1194698 ERX1509697 GENOMIC 279253648 2016-06-10 PHESPV0530 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439319/PHESPV0530.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439319/PHESPV0530.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439319 PHESPV0530 ERR1439322 PHESPV0533 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439322 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439322 10cf84f125b492ec61c55613965cac09;b0297298886883e24220c552d7ae5a5e 1313 137117076 6453cb6e05136f924755e58e406ebeb0;e4aa373f9489d858ed59687a0f43e591 SAMEA4023591 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439322/ERR1439322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439322/ERR1439322_2.fastq.gz 1690025 WGS PHESPV0533 RANDOM 93578903;94205233 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d848b38241aadeb989edef953e09270c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439322/ERR1439322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439322/ERR1439322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439322/PHESPV0533.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439322/PHESPV0533.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439322/ERR1439322_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439322/ERR1439322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439322/PHESPV0533.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439322/PHESPV0533.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99111552;99736945 ERS1194701 ERX1509700 GENOMIC 331283052 2016-06-10 PHESPV0533 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439322/PHESPV0533.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439322/PHESPV0533.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439322 PHESPV0533 ERR1439320 PHESPV0531 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439320 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439320 e6a5a7ec972d1e0c0983e5761d276bf7;4bccbb7e1c2a700201e0b66d80598f0c 1313 103793756 16f8288a5a62a56fa592b64544c4cd14;650ae64cd9b7691d4f271034ab8b22fa SAMEA4023589 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439320/ERR1439320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439320/ERR1439320_2.fastq.gz 1260348 WGS PHESPV0531 RANDOM 69470258;71787350 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5398bb6c16967fe938b8ed382867333c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439320/ERR1439320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439320/ERR1439320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439320/PHESPV0531.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439320/PHESPV0531.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439320/ERR1439320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439320/ERR1439320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439320/PHESPV0531.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439320/PHESPV0531.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73727538;76040170 ERS1194699 ERX1509698 GENOMIC 246364523 2016-06-10 PHESPV0531 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439320/PHESPV0531.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439320/PHESPV0531.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439320 PHESPV0531 ERR1439324 PHESPV0535 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439324 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439324 986758fbd2e2cbd45128958ebbf134ad;5416824ebb4974ac92f47c6d359c8763 1313 119392016 05548d9855608060caec811c8a190104;d0ca88dbb4b8c288a204ab3df64e2fa8 SAMEA4023593 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439324/ERR1439324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439324/ERR1439324_2.fastq.gz 1472745 WGS PHESPV0535 RANDOM 81495321;82196189 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cc517a51cbbbb5fa05de7ea56f5c46e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439324/ERR1439324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439324/ERR1439324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439324/PHESPV0535.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439324/PHESPV0535.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439324/ERR1439324_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439324/ERR1439324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439324/PHESPV0535.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439324/PHESPV0535.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86427127;87135340 ERS1194703 ERX1509702 GENOMIC 288757741 2016-06-10 PHESPV0535 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439324/PHESPV0535.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439324/PHESPV0535.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439324 PHESPV0535 ERR1439325 PHESPV0536 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439325 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439325 84261823286112c72e55a6b96b206f67;2ff790bb4fa7b68a038ff6d82bf50e0b 1313 101474124 893431cf9473d405b2539aa394562465;6b0cf386b98a2fcda9bfcce09b061143 SAMEA4023594 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439325/ERR1439325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439325/ERR1439325_2.fastq.gz 1249305 WGS PHESPV0536 RANDOM 69284005;69909365 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 86fef2810ce1e320cee5f14323159166 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439325/ERR1439325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439325/ERR1439325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439325/PHESPV0536.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439325/PHESPV0536.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439325/ERR1439325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439325/ERR1439325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439325/PHESPV0536.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439325/PHESPV0536.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73553082;74173613 ERS1194704 ERX1509703 GENOMIC 244848798 2016-06-10 PHESPV0536 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439325/PHESPV0536.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439325/PHESPV0536.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439325 PHESPV0536 ERR1439333 PHESPV0544 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439333 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439333 e977edea7311755b34514ed12c032378;263c3b508826fc8d324d770664831e5f 1313 105715073 1cee11d10258694caaf33a7d056258ba;e54004113b7cb2c9bbe8d54dab67a938 SAMEA4023602 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439333/ERR1439333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439333/ERR1439333_2.fastq.gz 1297305 WGS PHESPV0544 RANDOM 71968659;72005331 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ba62197f0dfb103aa245765c816d7cc3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439333/ERR1439333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439333/ERR1439333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439333/PHESPV0544.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439333/PHESPV0544.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439333/ERR1439333_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439333/ERR1439333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439333/PHESPV0544.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439333/PHESPV0544.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76338454;76379756 ERS1194712 ERX1509711 GENOMIC 254097057 2016-06-10 PHESPV0544 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439333/PHESPV0544.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439333/PHESPV0544.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439333 PHESPV0544 ERR1439327 PHESPV0538 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439327 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439327 3ec74bbed6bc2bc284be78d6bfb2c72c;7e7aa8e039afc987f38feb61f0ad0c12 1313 81188542 22720416e6a30464415158d655b9a1a0;7ee606d3c500805b7a10a6b2c151cf58 SAMEA4023596 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439327/ERR1439327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439327/ERR1439327_2.fastq.gz 986969 WGS PHESPV0538 RANDOM 54734358;56204221 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 85278de4be814b963d500d842f75a1ab ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439327/ERR1439327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439327/ERR1439327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439327/PHESPV0538.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439327/PHESPV0538.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439327/ERR1439327_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439327/ERR1439327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439327/PHESPV0538.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439327/PHESPV0538.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58204712;59660955 ERS1194706 ERX1509705 GENOMIC 193061332 2016-06-10 PHESPV0538 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439327/PHESPV0538.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439327/PHESPV0538.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439327 PHESPV0538 ERR1439332 PHESPV0543 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439332 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439332 ed80e3d5e2f4245f8e1c2448401876c7;d04aa4406af70062af967ac2ef713694 1313 100893928 53e170573d8b4336cb3bc980a2c7bcc8;e21f9453862d9a57d431d9b4fd4d60c9 SAMEA4023601 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439332/ERR1439332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439332/ERR1439332_2.fastq.gz 1241680 WGS PHESPV0543 RANDOM 68803391;69798461 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8bede332c9cd053afde018aca6c97d7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439332/ERR1439332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439332/ERR1439332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439332/PHESPV0543.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439332/PHESPV0543.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439332/ERR1439332_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439332/ERR1439332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439332/PHESPV0543.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439332/PHESPV0543.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73023702;74022706 ERS1194711 ERX1509710 GENOMIC 243370511 2016-06-10 PHESPV0543 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439332/PHESPV0543.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439332/PHESPV0543.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439332 PHESPV0543 ERR1439335 PHESPV0546 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439335 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439335 d1e2f0c02ac8c6de1d53dd7222121ccd;f2cadcdfe6f2d42173d01d355d5a60d7 1313 109121125 54109da92216718692bc5082bcb37267;b90c38f4140904a27dbadb2b0f655cd4 SAMEA4023604 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439335/ERR1439335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439335/ERR1439335_2.fastq.gz 1336235 WGS PHESPV0546 RANDOM 74085741;75238269 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 04c562a8770027f67c030a37b54cf8b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439335/ERR1439335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439335/ERR1439335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439335/PHESPV0546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439335/PHESPV0546.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439335/ERR1439335_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439335/ERR1439335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439335/PHESPV0546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439335/PHESPV0546.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78579043;79731656 ERS1194714 ERX1509713 GENOMIC 261761440 2016-06-10 PHESPV0546 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439335/PHESPV0546.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439335/PHESPV0546.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439335 PHESPV0546 ERR1439338 PHESPV0549 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439338 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439338 518ecd56a17188851ce2c56167e15242;465b7982c2dc21af0c421364c91356de 1313 100543450 077c1a86a5562aff7470202b5f8efa25;e3e6c28621b2426eca985cc6eb15d3a8 SAMEA4023607 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439338/ERR1439338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439338/ERR1439338_2.fastq.gz 1231829 WGS PHESPV0549 RANDOM 68154537;69517369 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b481eb86240cff6e73f63be25bb196a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439338/ERR1439338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439338/ERR1439338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439338/PHESPV0549.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439338/PHESPV0549.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439338/ERR1439338_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439338/ERR1439338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439338/PHESPV0549.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439338/PHESPV0549.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72362886;73715899 ERS1194717 ERX1509716 GENOMIC 241161211 2016-06-10 PHESPV0549 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439338/PHESPV0549.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439338/PHESPV0549.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439338 PHESPV0549 ERR1439348 PHESPV0559 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439348 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439348 566a38f9b41eac469c6c3262c11a6e4c;efc609ea56c0a4baed98397db6dd515e 1313 45733341 c9f33ea91a72119d4ec3a8c3e15ccfef;12bc58ebbeb51cff815fc701a13484ba SAMEA4023617 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439348/ERR1439348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439348/ERR1439348_2.fastq.gz 591807 WGS PHESPV0559 RANDOM 30456302;32948349 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 23e79a8de3bdfdb9c14595b177c00f50 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439348/ERR1439348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439348/ERR1439348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439348/PHESPV0559.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439348/PHESPV0559.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439348/ERR1439348_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439348/ERR1439348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439348/PHESPV0559.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439348/PHESPV0559.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 32683395;35154236 ERS1194727 ERX1509726 GENOMIC 116897704 2016-06-10 PHESPV0559 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439348/PHESPV0559.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439348/PHESPV0559.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439348 PHESPV0559 ERR1439359 PHESPV0570 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439359 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439359 d81976866f16f0b0b79e652c32dbb28c;6911d0e2745a287487b7bcb32308efec 1313 63281982 84a754b633657575a34def939c5eed1b;dd5de586babed1509f33a50c84938d95 SAMEA4023628 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439359/ERR1439359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439359/ERR1439359_2.fastq.gz 819870 WGS PHESPV0570 RANDOM 42549784;45211717 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b64c3a3c0d0518bf0f042a1e757c818a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439359/ERR1439359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439359/ERR1439359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439359/PHESPV0570.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439359/PHESPV0570.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439359/ERR1439359_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439359/ERR1439359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439359/PHESPV0570.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439359/PHESPV0570.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 45480470;48136076 ERS1194738 ERX1509737 GENOMIC 162071451 2016-06-10 PHESPV0570 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439359/PHESPV0570.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439359/PHESPV0570.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439359 PHESPV0570 ERR1439353 PHESPV0564 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439353 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439353 43c32c2af53d8ee49b16103ab34b1bf9;3e79bab819c36c599c7bcc85442b94de 1313 46831258 b5df8b5e1755ad8baed0ad0f102c182d;50ecd6194220524c38a5914a3477c8a9 SAMEA4023622 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439353/ERR1439353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439353/ERR1439353_2.fastq.gz 609591 WGS PHESPV0564 RANDOM 31274067;33562294 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 251566e8cb5454eb092ddcbd1a2d9296 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439353/ERR1439353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439353/ERR1439353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439353/PHESPV0564.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439353/PHESPV0564.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439353/ERR1439353_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439353/ERR1439353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439353/PHESPV0564.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439353/PHESPV0564.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 33545468;35817137 ERS1194732 ERX1509731 GENOMIC 120445884 2016-06-10 PHESPV0564 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439353/PHESPV0564.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439353/PHESPV0564.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439353 PHESPV0564 ERR1439365 PHESPV0576 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439365 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439365 2f7b9b1b8912ddea9eab015c84dc42b4;99d76a7bb203c98fd348d97a8cafb1d4 1313 42037335 3219eff3445f14202f99b948ade6c311;0c2e87a325c921adc77e81aa47a78be8 SAMEA4023634 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439365/ERR1439365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439365/ERR1439365_2.fastq.gz 548379 WGS PHESPV0576 RANDOM 28277699;30053315 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab6347a52d66ef5d0496063f8b3a5832 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439365/ERR1439365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439365/ERR1439365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439365/PHESPV0576.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439365/PHESPV0576.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439365/ERR1439365_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439365/ERR1439365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439365/PHESPV0576.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439365/PHESPV0576.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 30344209;32101742 ERS1194744 ERX1509743 GENOMIC 108396899 2016-06-10 PHESPV0576 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439365/PHESPV0576.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439365/PHESPV0576.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439365 PHESPV0576 ERR1439368 PHESPV0579 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439368 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439368 3d7d3b02239b7087c5b9b898c4cff914;821f8ce34d0209cc78b962908e389ab7 1313 44108285 654026f3a973ea010a5ee82ba8813e5d;3bc749d731c7dd7af91e8e9c843ab308 SAMEA4023637 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439368/ERR1439368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439368/ERR1439368_2.fastq.gz 574550 WGS PHESPV0579 RANDOM 29667347;31653109 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4fbb038371fe77daf31e4ca3b6503bd5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439368/ERR1439368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439368/ERR1439368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439368/PHESPV0579.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439368/PHESPV0579.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439368/ERR1439368_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439368/ERR1439368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439368/PHESPV0579.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439368/PHESPV0579.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 31827590;33797965 ERS1194747 ERX1509746 GENOMIC 113548847 2016-06-10 PHESPV0579 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439368/PHESPV0579.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439368/PHESPV0579.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439368 PHESPV0579 ERR1439379 PHESPV0590 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439379 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439379 139f33971f34271cadfec5db63e174d4;70836b57bc61e8d656d7e411d757350b 1313 32930780 a40a7dc72225ddbdff78bdb870000de1;625667023c21c9926b068b77e80f94a3 SAMEA4023648 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439379/ERR1439379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439379/ERR1439379_2.fastq.gz 428131 WGS PHESPV0590 RANDOM 22096934;23578681 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c07c08252159335d98dd063cbb3d1c14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439379/ERR1439379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439379/ERR1439379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439379/PHESPV0590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439379/PHESPV0590.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439379/ERR1439379_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439379/ERR1439379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439379/PHESPV0590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439379/PHESPV0590.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 23773274;25236897 ERS1194758 ERX1509757 GENOMIC 84582237 2016-06-10 PHESPV0590 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439379/PHESPV0590.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439379/PHESPV0590.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439379 PHESPV0590 ERR1439382 PHESPV0593 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439382 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439382 c5588393373fbdfa27e5785e98f93a9b;f7412974ce6f1f7345cacc10a9b59852 1313 59129703 2b91a9a557c2ece88eaf35a684cc3c38;3ebb23797b4c0013e995db4d7e9ec98f SAMEA4023651 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439382/ERR1439382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439382/ERR1439382_2.fastq.gz 732473 WGS PHESPV0593 RANDOM 39416888;41376590 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d0b72e154291e6b60cf6952a7527a0c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439382/ERR1439382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439382/ERR1439382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439382/PHESPV0593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439382/PHESPV0593.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439382/ERR1439382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439382/ERR1439382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439382/PHESPV0593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439382/PHESPV0593.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 42073564;43984470 ERS1194761 ERX1509760 GENOMIC 143377800 2016-06-10 PHESPV0593 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439382/PHESPV0593.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439382/PHESPV0593.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439382 PHESPV0593 ERR1439384 PHESPV0595 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439384 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439384 47cf53928ce8b32dd64ed1e07956abc7;de5886784296e65596fb5223299696d3 1313 117369995 f59b756464c2fce91f2dacdbb0daa77e;bc1cb6f8c301316ad1aecc4b3a07778a SAMEA4023653 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439384/ERR1439384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439384/ERR1439384_2.fastq.gz 1461942 WGS PHESPV0595 RANDOM 77824681;81421144 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 47b99151cb35e4a9059e90e6290f16c2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439384/ERR1439384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439384/ERR1439384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439384/PHESPV0595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439384/PHESPV0595.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439384/ERR1439384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439384/ERR1439384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439384/PHESPV0595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439384/PHESPV0595.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82689949;86235263 ERS1194763 ERX1509762 GENOMIC 286352460 2016-06-10 PHESPV0595 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439384/PHESPV0595.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439384/PHESPV0595.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439384 PHESPV0595 ERR1439388 PHESPV0599 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439388 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439388 8d5dd67dd418400a992931c41abdb02d;276be614c12ee1ba6d66ac8cff9bb2d7 1313 28214493 1c5cba73829e439e04d46d6cda73980e;b996d8284ddae67b561171d6808f03d2 SAMEA4023657 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439388/ERR1439388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439388/ERR1439388_2.fastq.gz 365840 WGS PHESPV0599 RANDOM 18913398;20224249 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b62ab8c9a1c5d8e328c84145876f4dec ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439388/ERR1439388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439388/ERR1439388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439388/PHESPV0599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439388/PHESPV0599.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439388/ERR1439388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439388/ERR1439388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439388/PHESPV0599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439388/PHESPV0599.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 20361193;21654365 ERS1194767 ERX1509766 GENOMIC 72224537 2016-06-10 PHESPV0599 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439388/PHESPV0599.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439388/PHESPV0599.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439388 PHESPV0599 ERR1439398 PHESPV0609 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439398 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439398 2c85dc8a8b6b6c38e4f603e6def6a98e;2667728536ace794920f7d25671fab45 1313 71267196 aa66885b99e46f4545fbf337448e3e0e;d7b6ef359062bde5136647b28768860e SAMEA4023667 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439398/ERR1439398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439398/ERR1439398_2.fastq.gz 886617 WGS PHESPV0609 RANDOM 47827890;49983392 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 82083f150b2921744fe561d23ce42796 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439398/ERR1439398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439398/ERR1439398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439398/PHESPV0609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439398/PHESPV0609.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439398/ERR1439398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439398/ERR1439398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439398/PHESPV0609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439398/PHESPV0609.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50993825;53103365 ERS1194777 ERX1509776 GENOMIC 173735690 2016-06-10 PHESPV0609 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439398/PHESPV0609.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439398/PHESPV0609.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439398 PHESPV0609 ERR1439399 PHESPV0610 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439399 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439399 d8f020946eb1f69d1ac6b6e9c5e235cb;c0229148503a7d87ea07af0163cfae2e 1313 130257563 93bdc55aae2dd44b5c1eebb984e5dd9a;c23384d9d80b957533a866dce4ed5816 SAMEA4023668 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439399/ERR1439399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439399/ERR1439399_2.fastq.gz 1622082 WGS PHESPV0610 RANDOM 87453300;90851186 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0b4256453c9e1258e2a413a5c19901f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439399/ERR1439399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439399/ERR1439399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439399/PHESPV0610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439399/PHESPV0610.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439399/ERR1439399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439399/ERR1439399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439399/PHESPV0610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439399/PHESPV0610.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92791156;96155706 ERS1194778 ERX1509777 GENOMIC 318030372 2016-06-10 PHESPV0610 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439399/PHESPV0610.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439399/PHESPV0610.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439399 PHESPV0610 ERR1439400 PHESPV0611 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439400 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439400 b327a743da79d6a0c2853512e6bc6e13;0d2903111c760194982801b96ce8b967 1313 46980473 62e6a110f4fa3cac1fa530e8d1b8e1d2;3c383f058399a5351017f4568f6f8c81 SAMEA4023669 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439400/ERR1439400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439400/ERR1439400_2.fastq.gz 604565 WGS PHESPV0611 RANDOM 31053267;33980018 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 91d5617a79ec6a19b2cc3b0ed4ec05a0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439400/ERR1439400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439400/ERR1439400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439400/PHESPV0611.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439400/PHESPV0611.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439400/ERR1439400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439400/ERR1439400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439400/PHESPV0611.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439400/PHESPV0611.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 33302773;36210170 ERS1194779 ERX1509778 GENOMIC 119307210 2016-06-10 PHESPV0611 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439400/PHESPV0611.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439400/PHESPV0611.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439400 PHESPV0611 ERR1439403 PHESPV0614 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439403 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439403 40aea3011ff004ef2b8d80f324528ae7;85de3ffa15b2acd92a9db8186ad09670 1313 61885124 dcd911b765e0cb964dec15b6d526ac48;84fdc29f6bf614433e2c268e9a29eaff SAMEA4023672 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439403/ERR1439403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439403/ERR1439403_2.fastq.gz 812075 WGS PHESPV0614 RANDOM 41688665;44401516 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 09b696b0ee9109880285e5943758da9a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439403/ERR1439403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439403/ERR1439403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439403/PHESPV0614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439403/PHESPV0614.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439403/ERR1439403_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439403/ERR1439403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439403/PHESPV0614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439403/PHESPV0614.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 44612986;47313097 ERS1194782 ERX1509781 GENOMIC 160651611 2016-06-10 PHESPV0614 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439403/PHESPV0614.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439403/PHESPV0614.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439403 PHESPV0614 ERR1439415 PHESPV0626 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439415 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439415 a491e51504ab2729e563f5d7b253cd5f;e68c50227ffd1f435b2f44577c989f30 1313 29066876 9b19f4ae8b3ea2376b56b08784be37f8;2b24150e09ddf01b79df00740cb011b5 SAMEA4023684 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439415/ERR1439415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439415/ERR1439415_2.fastq.gz 376999 WGS PHESPV0626 RANDOM 19496827;20724890 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3f01aa0e4f8397e3c4c0124aa27a6f10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439415/ERR1439415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439415/ERR1439415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439415/PHESPV0626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439415/PHESPV0626.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439415/ERR1439415_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439415/ERR1439415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439415/PHESPV0626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439415/PHESPV0626.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 20988070;22197469 ERS1194794 ERX1509793 GENOMIC 74436820 2016-06-10 PHESPV0626 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439415/PHESPV0626.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439415/PHESPV0626.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439415 PHESPV0626 ERR1439412 PHESPV0623 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439412 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439412 e1f6e8fc749a03225e900c8905103d6c;545085f0a066393d8b752494bdbb2cc2 1313 71394168 bc69904ea1ace7351d36d722361f1a35;2df48c84444718934cb129ad9afb487d SAMEA4023681 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439412/ERR1439412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439412/ERR1439412_2.fastq.gz 888666 WGS PHESPV0623 RANDOM 47836324;49761274 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10d62fb78a8202ca31d1cd658d02f46f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439412/ERR1439412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439412/ERR1439412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439412/PHESPV0623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439412/PHESPV0623.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439412/ERR1439412_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439412/ERR1439412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439412/PHESPV0623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439412/PHESPV0623.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51001712;52886804 ERS1194791 ERX1509790 GENOMIC 174110333 2016-06-10 PHESPV0623 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439412/PHESPV0623.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439412/PHESPV0623.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439412 PHESPV0623 ERR1439420 PHESPV0631 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439420 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439420 928a85ff98adcc3f8efce066befa4f8f;10a5e448756d26a73ef68008c22b76a1 1313 73557773 ec8baeecfe08154b0ce7446b931991d4;c2c1fce1bec9403e43c53842d29fb1d2 SAMEA4023689 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439420/ERR1439420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439420/ERR1439420_2.fastq.gz 965549 WGS PHESPV0631 RANDOM 49459687;52621227 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ccd19739f92ad885950e0a51f43e777e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439420/ERR1439420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439420/ERR1439420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439420/PHESPV0631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439420/PHESPV0631.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439420/ERR1439420_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439420/ERR1439420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439420/PHESPV0631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439420/PHESPV0631.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52844571;56005803 ERS1194799 ERX1509798 GENOMIC 190950296 2016-06-10 PHESPV0631 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439420/PHESPV0631.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439420/PHESPV0631.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439420 PHESPV0631 ERR1439423 PHESPV0634 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439423 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439423 430d05b6c074f5809242a0084e19ff30;bce1300f86e7b360dc4fdc6dcea26a3e 1313 60627309 ba16bc6baa40da742ee258f10cb2a8da;0e3ac7e9cb5085b83ff0bb0adb00c29a SAMEA4023692 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439423/ERR1439423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439423/ERR1439423_2.fastq.gz 787904 WGS PHESPV0634 RANDOM 40758107;43313246 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a547e01bf44cb7e0e23bc620c77088b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439423/ERR1439423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439423/ERR1439423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439423/PHESPV0634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439423/PHESPV0634.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439423/ERR1439423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439423/ERR1439423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439423/PHESPV0634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439423/PHESPV0634.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 43589802;46134233 ERS1194802 ERX1509801 GENOMIC 155764020 2016-06-10 PHESPV0634 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439423/PHESPV0634.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439423/PHESPV0634.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439423 PHESPV0634 ERR1439421 PHESPV0632 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439421 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439421 7629c9a8cadc3d46fc5756cf2115cd9c;f19171f0e29dfe2f6f5e67d60004062a 1313 103533188 fa26a00a2181693bbec96c0392de5567;5360b6d7e8f69dc85e14cac481ed6e71 SAMEA4023690 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439421/ERR1439421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439421/ERR1439421_2.fastq.gz 1357479 WGS PHESPV0632 RANDOM 69785104;74071283 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bf28da378d3fb739da6c105bf803c59f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439421/ERR1439421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439421/ERR1439421_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439421/PHESPV0632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439421/PHESPV0632.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439421/ERR1439421_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439421/ERR1439421_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439421/PHESPV0632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439421/PHESPV0632.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74307445;78628194 ERS1194800 ERX1509799 GENOMIC 268572844 2016-06-10 PHESPV0632 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439421/PHESPV0632.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439421/PHESPV0632.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439421 PHESPV0632 ERR1439440 PHESPV0651 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439440 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439440 94c0d07738e9c1358ccc8ef994354f49;6a14080eddd66df295aafe2bba07cffb 1313 103591976 1d3bf6afc5e741292084fe4efc7c581a;0d91615828afbf34ee8a980521577515 SAMEA4023709 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439440/ERR1439440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439440/ERR1439440_2.fastq.gz 1196424 WGS PHESPV0651 RANDOM 68054601;72637419 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c1f471eaf8ef235182ecee5abdc5428 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439440/ERR1439440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439440/ERR1439440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439440/PHESPV0651.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439440/PHESPV0651.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439440/ERR1439440_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439440/ERR1439440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439440/PHESPV0651.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439440/PHESPV0651.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72146102;76583677 ERS1194819 ERX1509818 GENOMIC 237038921 2016-06-10 PHESPV0651 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439440/PHESPV0651.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439440/PHESPV0651.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439440 PHESPV0651 ERR1439442 PHESPV0653 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439442 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439442 02eb43fd872f0d634212b50739ebafd0;35584b80b1bbf3d33f36b64f5dca9d83 1313 109016439 8b47788b1696590c62d554e5a412aabc;0b46e0909151a4de584741565a19b6e1 SAMEA4023711 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439442/ERR1439442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439442/ERR1439442_2.fastq.gz 1322619 WGS PHESPV0653 RANDOM 72244220;76178424 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 053a5050b364ba12388346f09d496c36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439442/ERR1439442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439442/ERR1439442_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439442/PHESPV0653.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439442/PHESPV0653.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439442/ERR1439442_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439442/ERR1439442_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439442/PHESPV0653.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439442/PHESPV0653.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76741857;80661806 ERS1194821 ERX1509820 GENOMIC 258737189 2016-06-10 PHESPV0653 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439442/PHESPV0653.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439442/PHESPV0653.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439442 PHESPV0653 ERR1439447 PHESPV0658 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439447 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439447 19ec8cc2a2d7fa0f07d5459675c0c56f;f225375e876302be3a6190873ebbae60 1313 122372695 53f34042431af9a9008c946cd8663eb3;6adc3d16225efb5efc2023ed1724f98a SAMEA4023716 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439447/ERR1439447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439447/ERR1439447_2.fastq.gz 1520808 WGS PHESPV0658 RANDOM 81591004;84978574 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b784ea19766930d625de4787fc90c56 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439447/ERR1439447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439447/ERR1439447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439447/PHESPV0658.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439447/PHESPV0658.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439447/ERR1439447_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439447/ERR1439447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439447/PHESPV0658.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439447/PHESPV0658.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86614739;89945675 ERS1194826 ERX1509825 GENOMIC 297831156 2016-06-10 PHESPV0658 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439447/PHESPV0658.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439447/PHESPV0658.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439447 PHESPV0658 ERR1439466 PHESPV0677 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439466 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439466 025e54eff49e02048288853a8209ee25;636be64b36fc7c7e0c4434a4fa7a95a5 1313 132193428 9f59293d9795d615c2f6743a89b6a13d;bf9f3ed1a180f0c1458b1d35451e9377 SAMEA4023735 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439466/ERR1439466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439466/ERR1439466_2.fastq.gz 1650243 WGS PHESPV0677 RANDOM 88698051;92061808 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 88c0848a33ab78fc657726791c2bf8a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439466/ERR1439466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439466/ERR1439466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439466/PHESPV0677.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439466/PHESPV0677.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439466/ERR1439466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439466/ERR1439466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439466/PHESPV0677.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439466/PHESPV0677.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94134027;97473294 ERS1194845 ERX1509844 GENOMIC 323593256 2016-06-10 PHESPV0677 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439466/PHESPV0677.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439466/PHESPV0677.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439466 PHESPV0677 ERR1439431 PHESPV0642 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439431 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439431 e1113dcd0edafe78bfe8fecd4560319c;3961f07eaebe7ad191aaff3fa9aa07f7 1313 69040850 319d4bfd2235c083268e350e9cf73b33;6d020969deafbd914a0c721370b2b96b SAMEA4023700 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439431/ERR1439431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439431/ERR1439431_2.fastq.gz 905374 WGS PHESPV0642 RANDOM 46393725;49236449 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bfd59d9e5037cb0d33f22d6eaad4b594 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439431/ERR1439431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439431/ERR1439431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439431/PHESPV0642.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439431/PHESPV0642.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439431/ERR1439431_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439431/ERR1439431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439431/PHESPV0642.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439431/PHESPV0642.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49595503;52438112 ERS1194810 ERX1509809 GENOMIC 178991357 2016-06-10 PHESPV0642 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439431/PHESPV0642.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439431/PHESPV0642.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439431 PHESPV0642 ERR1439520 PHESPV0731 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439520 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439520 33d2823afe0c6d05a92d702ed8ca368e;d8fb57148910d976dc1a51d3898580e0 1313 98620855 67bd4b98587c5a6e781d955568d26e27;dcc82414cf164eb06cff4b1d2d33b594 SAMEA4023789 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439520/ERR1439520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439520/ERR1439520_2.fastq.gz 1174791 WGS PHESPV0731 RANDOM 66356715;68063028 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ccf7f866a711a274d0c1e67532dc3eb9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439520/ERR1439520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439520/ERR1439520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439520/PHESPV0731.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439520/PHESPV0731.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439520/ERR1439520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439520/ERR1439520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439520/PHESPV0731.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439520/PHESPV0731.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70400059;72066203 ERS1194899 ERX1509898 GENOMIC 228496758 2016-06-10 PHESPV0731 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439520/PHESPV0731.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439520/PHESPV0731.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439520 PHESPV0731 ERR1439468 PHESPV0679 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439468 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439468 51138f233ecae8811d1aee3aa6b3ba56;4b7749322c5b233103f187694c5521d1 1313 62019240 4ae5fdeeb0af266982a6429c24523283;73a74977052f7da55bf6c5137a3b08ce SAMEA4023737 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439468/ERR1439468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439468/ERR1439468_2.fastq.gz 764008 WGS PHESPV0679 RANDOM 41089500;43533725 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f21adaa72d33c3f5dbed8f2b2bc89ad4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439468/ERR1439468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439468/ERR1439468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439468/PHESPV0679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439468/PHESPV0679.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439468/ERR1439468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439468/ERR1439468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439468/PHESPV0679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439468/PHESPV0679.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 43855250;46242849 ERS1194847 ERX1509846 GENOMIC 149369917 2016-06-10 PHESPV0679 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439468/PHESPV0679.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439468/PHESPV0679.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439468 PHESPV0679 ERR1439488 PHESPV0699 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439488 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439488 7c69dcc91cec23df84ec42ac75e2d5c3;490d0b43f6b4589508c20ee72d6d23ee 1313 115108295 9df24f448372cfa54c79161e47a2c385;df9fc85d85e60b75bf58642208ff948d SAMEA4023757 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439488/ERR1439488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439488/ERR1439488_2.fastq.gz 1386501 WGS PHESPV0699 RANDOM 77083223;80651294 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e9b36dc951c2def10202032d1ee3699 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439488/ERR1439488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439488/ERR1439488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439488/PHESPV0699.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439488/PHESPV0699.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439488/ERR1439488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439488/ERR1439488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439488/PHESPV0699.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439488/PHESPV0699.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81780368;85381275 ERS1194867 ERX1509866 GENOMIC 270972405 2016-06-10 PHESPV0699 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439488/PHESPV0699.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439488/PHESPV0699.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439488 PHESPV0699 ERR1439469 PHESPV0680 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439469 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439469 f47c86ca9882ab860463277a86b8e524;a1fd363daa57ddd054d66f70154f8809 1313 118162571 99e1e8cdc1c7f9c15c2cda8eedbb4e21;5a33d108739cb9e46c3c84f78212395b SAMEA4023738 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439469/ERR1439469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439469/ERR1439469_2.fastq.gz 1473285 WGS PHESPV0680 RANDOM 78737669;81610965 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e064d84fbaec3ee475783afd1b69f950 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439469/ERR1439469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439469/ERR1439469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439469/PHESPV0680.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439469/PHESPV0680.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439469/ERR1439469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439469/ERR1439469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439469/PHESPV0680.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439469/PHESPV0680.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83625593;86450613 ERS1194848 ERX1509847 GENOMIC 288657175 2016-06-10 PHESPV0680 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439469/PHESPV0680.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439469/PHESPV0680.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439469 PHESPV0680 ERR1439523 PHESPV0734 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439523 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439523 f994d6b3928eb37d20281320a88cfd42;edb11f87828f6cb6dcab52576ea11ee5 1313 109080677 41078ec7b413d4bf93fd991259af77ad;486195a716bcd0e7bb013f4674733897 SAMEA4023792 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439523/ERR1439523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439523/ERR1439523_2.fastq.gz 1312025 WGS PHESPV0734 RANDOM 74130383;74967218 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f08cdbabad7356a2f8c3debef6238f1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439523/ERR1439523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439523/ERR1439523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439523/PHESPV0734.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439523/PHESPV0734.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439523/ERR1439523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439523/ERR1439523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439523/PHESPV0734.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439523/PHESPV0734.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78602544;79429847 ERS1194902 ERX1509901 GENOMIC 256020782 2016-06-10 PHESPV0734 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439523/PHESPV0734.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439523/PHESPV0734.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439523 PHESPV0734 ERR1439535 PHESPV0746 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439535 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439535 de4245ff21fd419cbb5678326f54a82c;6c031e263acb913773e60b06bde7a1dc 1313 84205608 9719a097de3e94126abdd8eac6a32fbc;ddec06d44d869280454f060cb56fcc49 SAMEA4023804 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439535/ERR1439535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439535/ERR1439535_2.fastq.gz 1000332 WGS PHESPV0746 RANDOM 56645951;58121685 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2bf53c0f12b32e1000272c24d0fa7f51 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439535/ERR1439535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439535/ERR1439535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439535/PHESPV0746.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439535/PHESPV0746.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439535/ERR1439535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439535/ERR1439535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439535/PHESPV0746.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439535/PHESPV0746.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60170389;61616446 ERS1194914 ERX1509913 GENOMIC 194445195 2016-06-10 PHESPV0746 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439535/PHESPV0746.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439535/PHESPV0746.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439535 PHESPV0746 ERR1439551 PHESPV0762 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439551 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439551 0ab9c36ad1fe7bb7d086a9d8b2b1f781;2611b7a1df6b89cd7659e2dae0a9e885 1313 62031915 2ddf6dca3be9daf7e35a087dfed7ea42;ce5cbd7e104369e88e166f650795e1eb SAMEA4023820 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439551/ERR1439551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439551/ERR1439551_2.fastq.gz 771744 WGS PHESPV0762 RANDOM 41629792;43256173 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a84f529573396993ca8ddec54c01aaf1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439551/ERR1439551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439551/ERR1439551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439551/PHESPV0762.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439551/PHESPV0762.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439551/ERR1439551_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439551/ERR1439551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439551/PHESPV0762.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439551/PHESPV0762.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 44420317;45996552 ERS1194930 ERX1509929 GENOMIC 151272990 2016-06-10 PHESPV0762 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439551/PHESPV0762.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439551/PHESPV0762.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439551 PHESPV0762 ERR1439552 PHESPV0763 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439552 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439552 b58f6774623562c8d6095607060429b9;cea1de34eed3fee9254141831f1faa18 1313 74982358 4e43b67097d42bea652951f3581a204e;9baa191f8f4e8f9c8deb8a1afe502abe SAMEA4023821 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439552/ERR1439552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439552/ERR1439552_2.fastq.gz 929846 WGS PHESPV0763 RANDOM 50577925;52566707 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c2d94c20a3af1c5149982571b736e8c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439552/ERR1439552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439552/ERR1439552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439552/PHESPV0763.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439552/PHESPV0763.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439552/ERR1439552_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439552/ERR1439552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439552/PHESPV0763.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439552/PHESPV0763.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 53868404;55814723 ERS1194931 ERX1509930 GENOMIC 182310877 2016-06-10 PHESPV0763 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439552/PHESPV0763.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439552/PHESPV0763.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439552 PHESPV0763 ERR1439557 PHESPV0768 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439557 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439557 b2cfa0c13d0c0711a83a4f30f5a83367;b4c417b8d182c788c1187aa72baad5ec 1313 73944532 2c62748abf2ae834e5e71104e16c17bd;a1fc74c3375aecefafd065929661cfae SAMEA4023826 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439557/ERR1439557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439557/ERR1439557_2.fastq.gz 922624 WGS PHESPV0768 RANDOM 49755443;51737603 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b9c1f53b4490adc1c88199d8234b8af3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439557/ERR1439557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439557/ERR1439557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439557/PHESPV0768.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439557/PHESPV0768.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439557/ERR1439557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439557/ERR1439557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439557/PHESPV0768.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439557/PHESPV0768.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 53036486;54971192 ERS1194936 ERX1509935 GENOMIC 180994715 2016-06-10 PHESPV0768 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439557/PHESPV0768.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439557/PHESPV0768.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439557 PHESPV0768 ERR1439558 PHESPV0769 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439558 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439558 e58e4f0d52c074ea261c5ae02192d828;6e0a7b296f73664d0cdc63d636dc04f7 1313 144027550 8485fa88c2bd58057f4570c75b585892;4c21b9ca5d55b7feb2e24745427fca5b SAMEA4023827 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439558/ERR1439558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439558/ERR1439558_2.fastq.gz 1679452 WGS PHESPV0769 RANDOM 96305617;98616659 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 325dc55fff3bf04fe4c7c35d7f926481 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439558/ERR1439558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439558/ERR1439558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439558/PHESPV0769.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439558/PHESPV0769.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439558/ERR1439558_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439558/ERR1439558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439558/PHESPV0769.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439558/PHESPV0769.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101813324;104042205 ERS1194937 ERX1509936 GENOMIC 333317223 2016-06-10 PHESPV0769 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439558/PHESPV0769.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439558/PHESPV0769.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439558 PHESPV0769 ERR1439560 PHESPV0771 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439560 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439560 ff23a184de98538e91cbb7149d75ece2;4085fdfb1670d012913293923edfaa50 1313 91282573 841608d80f476c28ab071e517b5d45b1;ede1ff6e99fbffa370e8ac33cd48d520 SAMEA4023829 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439560/ERR1439560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439560/ERR1439560_2.fastq.gz 1137377 WGS PHESPV0771 RANDOM 61386633;63853774 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ce872735c1a3ac97dfa41b1308383ff2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439560/ERR1439560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439560/ERR1439560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439560/PHESPV0771.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439560/PHESPV0771.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439560/ERR1439560_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439560/ERR1439560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439560/PHESPV0771.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439560/PHESPV0771.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65293344;67710426 ERS1194939 ERX1509938 GENOMIC 222959187 2016-06-10 PHESPV0771 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439560/PHESPV0771.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439560/PHESPV0771.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439560 PHESPV0771 ERR1439573 PHESPV0784 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439573 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439573 a3a29e64234e55a751bffddfffeaa9ea;2036f64fa3965a69edd3858773428bb0 1313 74718792 01ccdb293843ac54ed1626bb087e68b1;8b57505c8fbca49b8e8aa0bcd615c7c4 SAMEA4023842 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439573/ERR1439573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439573/ERR1439573_2.fastq.gz 921955 WGS PHESPV0784 RANDOM 49657990;52654084 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1f5440e8528548f64b1022c91633eec4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439573/ERR1439573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439573/ERR1439573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439573/PHESPV0784.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439573/PHESPV0784.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439573/ERR1439573_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439573/ERR1439573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439573/PHESPV0784.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439573/PHESPV0784.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52926537;55863671 ERS1194952 ERX1509951 GENOMIC 180361331 2016-06-10 PHESPV0784 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439573/PHESPV0784.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439573/PHESPV0784.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439573 PHESPV0784 ERR1439624 PHESPV0835 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439624 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439624 2dc9d88751ca10604a374cfe12905e98;4caf5e88237252fd10152fbcd88fa628 1313 136720132 7ac2cef0e3c1bf9767889cad0611a2d6;42d90706b656351132ca816cd39ab51a SAMEA4023893 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439624/ERR1439624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439624/ERR1439624_2.fastq.gz 1543693 WGS PHESPV0835 RANDOM 89138387;93615123 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d4cd243ee00c281d0f8408043cfdf8e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439624/ERR1439624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439624/ERR1439624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439624/PHESPV0835.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439624/PHESPV0835.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439624/ERR1439624_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439624/ERR1439624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439624/PHESPV0835.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439624/PHESPV0835.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94246659;98614877 ERS1195003 ERX1510002 GENOMIC 305675754 2016-06-10 PHESPV0835 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439624/PHESPV0835.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439624/PHESPV0835.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439624 PHESPV0835 ERR1439925 PHESPV1136 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439925 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439925 82bf5fcb41bad3d7f66d5f316c440a95;c8f8a9388d059045aee6b4c573bf8581 1313 71598321 55905eb43466d22b222c852650aec3e7;12904b3fcccfab6c026918cfcacc7155 SAMEA4024194 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439925/ERR1439925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439925/ERR1439925_2.fastq.gz 843117 WGS PHESPV1136 RANDOM 47637679;49932982 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f80799525025b529086762f7f191273b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439925/ERR1439925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439925/ERR1439925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439925/PHESPV1136.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439925/PHESPV1136.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439925/ERR1439925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439925/ERR1439925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439925/PHESPV1136.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439925/PHESPV1136.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50626822;52887669 ERS1195304 ERX1510303 GENOMIC 167422503 2016-06-10 PHESPV1136 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439925/PHESPV1136.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439925/PHESPV1136.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439925 PHESPV1136 ERR1439945 PHESPV1156 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439945 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439945 48ba45df496b64e44fb88aef3bd9bb5a;1da5ab599ec12065dbaca39560aaaf19 1313 131318529 9330d8e490999c5f20c54140fb730d69;c0cab86a1002626f54f30322e3bb285a SAMEA4024214 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439945/ERR1439945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439945/ERR1439945_2.fastq.gz 1468130 WGS PHESPV1156 RANDOM 87424251;89885139 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 843468f8e225b7a3c5f09c26b5af83f1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439945/ERR1439945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439945/ERR1439945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439945/PHESPV1156.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439945/PHESPV1156.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439945/ERR1439945_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439945/ERR1439945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439945/PHESPV1156.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439945/PHESPV1156.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92321697;94761243 ERS1195324 ERX1510323 GENOMIC 291444832 2016-06-10 PHESPV1156 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439945/PHESPV1156.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439945/PHESPV1156.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439945 PHESPV1156 ERR1439956 PHESPV1167 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439956 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439956 e1012c2bd52380b7a6cbee1e5a3e8a14;507b725f0b9f25ca69a4c14fda2f7326 1313 103057605 26caa884f7b68eb06fa2b6f8f245f68f;acf9a05d9a4def9cb4a87f4fbdc6d20a SAMEA4024225 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439956/ERR1439956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439956/ERR1439956_2.fastq.gz 1142602 WGS PHESPV1167 RANDOM 68292413;70680571 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c27286680554733719ce5e5bb4db568f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439956/ERR1439956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439956/ERR1439956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439956/PHESPV1167.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439956/PHESPV1167.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439956/ERR1439956_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439956/ERR1439956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439956/PHESPV1167.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439956/PHESPV1167.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72206283;74553616 ERS1195335 ERX1510334 GENOMIC 226566623 2016-06-10 PHESPV1167 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439956/PHESPV1167.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439956/PHESPV1167.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439956 PHESPV1167 ERR1439957 PHESPV1168 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439957 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439957 433f6583a7f903a4fa019787f7735e80;4253b2fe7b8abcd687bc075fdd56511b 1313 178486298 9ca2bb9987a792332955711baf77ed77;3289c04a8fee62e478dbdb778f48454b SAMEA4024226 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439957/ERR1439957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439957/ERR1439957_2.fastq.gz 2091130 WGS PHESPV1168 RANDOM 119601546;123657454 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aaa717900769297403092cde4fa10aaa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439957/ERR1439957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439957/ERR1439957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439957/PHESPV1168.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439957/PHESPV1168.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439957/ERR1439957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439957/ERR1439957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439957/PHESPV1168.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439957/PHESPV1168.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126211605;130115088 ERS1195336 ERX1510335 GENOMIC 414851536 2016-06-10 PHESPV1168 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439957/PHESPV1168.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439957/PHESPV1168.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439957 PHESPV1168 ERR1439959 PHESPV1170 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439959 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439959 ffb092cde94882d727ea91b8259b9a1b;29adcf3f8fdd8ce99550fc314204dd1f 1313 103299484 beb2f812a615826e3ef65be1d719ee0c;cd9d94bfc1af477a1c3d9a5689ef5c1a SAMEA4024228 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439959/ERR1439959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439959/ERR1439959_2.fastq.gz 1175390 WGS PHESPV1170 RANDOM 67770975;71997437 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ce1a21e683bbc37cd1e2759de199f85 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439959/ERR1439959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439959/ERR1439959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439959/PHESPV1170.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439959/PHESPV1170.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439959/ERR1439959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439959/ERR1439959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439959/PHESPV1170.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439959/PHESPV1170.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71759220;75901672 ERS1195338 ERX1510337 GENOMIC 233068205 2016-06-10 PHESPV1170 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439959/PHESPV1170.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439959/PHESPV1170.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439959 PHESPV1170 ERR1439960 PHESPV1171 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439960 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439960 ad08603fd6123a91973b1c69b76833bf;206c6f130c99744feae3877981f2b32e 1313 133445942 e3a96e85bd0d72d775d38881e2e77af7;5767b951ce1b023711d67bc49ea76db9 SAMEA4024229 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439960/ERR1439960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439960/ERR1439960_2.fastq.gz 1530104 WGS PHESPV1171 RANDOM 87945975;91889348 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4623e74ebc4441c886da1f25a690000a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439960/ERR1439960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439960/ERR1439960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439960/PHESPV1171.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439960/PHESPV1171.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439960/ERR1439960_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439960/ERR1439960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439960/PHESPV1171.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439960/PHESPV1171.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92991968;96864795 ERS1195339 ERX1510338 GENOMIC 303525962 2016-06-10 PHESPV1171 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439960/PHESPV1171.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439960/PHESPV1171.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439960 PHESPV1171 ERR1439970 PHESPV1181 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439970 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439970 44081797509025e7501a5bb6ede7c73b;3ec84e6454c469aa800bf000c3f028e8 1313 107758916 04692975c6b8255cb73f9a29c41eed8e;7373bfd9e05230e158972e3d36a8aa93 SAMEA4024239 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439970/ERR1439970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439970/ERR1439970_2.fastq.gz 1242781 WGS PHESPV1181 RANDOM 71223070;74169400 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 735a4913947efd846e19e56747a2aa44 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439970/ERR1439970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439970/ERR1439970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439970/PHESPV1181.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439970/PHESPV1181.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439970/ERR1439970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439970/ERR1439970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439970/PHESPV1181.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439970/PHESPV1181.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75405302;78289496 ERS1195349 ERX1510348 GENOMIC 246658022 2016-06-10 PHESPV1181 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439970/PHESPV1181.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439970/PHESPV1181.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439970 PHESPV1181 ERR1439972 PHESPV1183 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439972 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439972 0481078620f04f4bb7cabe7a4c57e2cd;21262357d1eb9281cb1a495a5ce6c997 1313 138698118 cfd3a9cc3e2898e5e603999eeeae942b;1b4c21c90b686adcfec4e37850e342ba SAMEA4024241 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439972/ERR1439972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439972/ERR1439972_2.fastq.gz 1589819 WGS PHESPV1183 RANDOM 91682199;95777324 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d42c266a873a9b09411ddac15194783a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439972/ERR1439972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439972/ERR1439972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439972/PHESPV1183.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439972/PHESPV1183.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439972/ERR1439972_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439972/ERR1439972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439972/PHESPV1183.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439972/PHESPV1183.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96882065;100909491 ERS1195351 ERX1510350 GENOMIC 315567627 2016-06-10 PHESPV1183 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439972/PHESPV1183.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439972/PHESPV1183.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439972 PHESPV1183 ERR1439993 PHESPV1204 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439993 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439993 9926d9ce401f856072ef6055a0f03f82;dee636da4d6a946240347ca8ae2b3cb9 1313 113977050 ed56b82c67f46d141f41ad33d5479767;b5b5fb7983ea554110846ee2a376a3f0 SAMEA4024262 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439993/ERR1439993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439993/ERR1439993_2.fastq.gz 1296104 WGS PHESPV1204 RANDOM 75097584;78728528 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 873cd5dcca94305a60fcc994969f5f9a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439993/ERR1439993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439993/ERR1439993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439993/PHESPV1204.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439993/PHESPV1204.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439993/ERR1439993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439993/ERR1439993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439993/PHESPV1204.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439993/PHESPV1204.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79448993;83017089 ERS1195372 ERX1510371 GENOMIC 257164558 2016-06-10 PHESPV1204 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439993/PHESPV1204.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439993/PHESPV1204.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439993 PHESPV1204 ERR1440000 PHESPV1211 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440000 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440000 8354458a78e11e74602426a579bc0659;0c0e1287fc6bcce0a1aa3161dff7f076 1313 105790473 6d9062cb6885c1eee9b35a2138336403;b87d782927c197d666fc6057296a0493 SAMEA4024269 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440000/ERR1440000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440000/ERR1440000_2.fastq.gz 1212168 WGS PHESPV1211 RANDOM 70124572;73062905 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 79798c12d71758b9e7b705e3c57a3216 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440000/ERR1440000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440000/ERR1440000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440000/PHESPV1211.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440000/PHESPV1211.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440000/ERR1440000_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440000/ERR1440000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440000/PHESPV1211.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440000/PHESPV1211.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74231207;77101524 ERS1195379 ERX1510378 GENOMIC 240657161 2016-06-10 PHESPV1211 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440000/PHESPV1211.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440000/PHESPV1211.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440000 PHESPV1211 ERR1440005 PHESPV1216 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440005 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440005 5175c5c5242c091f51077f4a9995171f;673973ccd9e80cb951f9f92df306563e 1313 123642272 1b604f252d8bd7255384beb6bd0e3cb5;901578c8ea98d5b4ddd76d43c0fee607 SAMEA4024274 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440005/ERR1440005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440005/ERR1440005_2.fastq.gz 1416248 WGS PHESPV1216 RANDOM 81821138;85424874 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8c861a5b5a0c7856f04e911032a53000 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440005/ERR1440005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440005/ERR1440005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440005/PHESPV1216.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440005/PHESPV1216.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440005/ERR1440005_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440005/ERR1440005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440005/PHESPV1216.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440005/PHESPV1216.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86501692;90036415 ERS1195384 ERX1510383 GENOMIC 281007676 2016-06-10 PHESPV1216 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440005/PHESPV1216.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440005/PHESPV1216.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440005 PHESPV1216 ERR1440007 PHESPV1218 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440007 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440007 da712e11f6a6a4bc4c5be35f4e7e509c;7ac821a67e0a52c0f3d536ca27ab9ed9 1313 118533103 9c68610f231f375c1e573a8614a2d6f8;5db8dfcc51a2fabb9d2ff31d31bb3ae1 SAMEA4024276 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440007/ERR1440007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440007/ERR1440007_2.fastq.gz 1364326 WGS PHESPV1218 RANDOM 78647958;81699017 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d439c1294531ed06657a04ba7101140 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440007/ERR1440007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440007/ERR1440007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440007/PHESPV1218.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440007/PHESPV1218.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440007/ERR1440007_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440007/ERR1440007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440007/PHESPV1218.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440007/PHESPV1218.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83195619;86185213 ERS1195386 ERX1510385 GENOMIC 270887235 2016-06-10 PHESPV1218 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440007/PHESPV1218.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440007/PHESPV1218.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440007 PHESPV1218 ERR1440008 PHESPV1219 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440008 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440008 4951966db908dbb8f118c79ade5c7c4d;f75ea41b941c39b1b082af061bb99de0 1313 180826089 b703670e844a4a63fee62710050f5d01;5c4054d7d9a79027e5f007081b90817e SAMEA4024277 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440008/ERR1440008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440008/ERR1440008_2.fastq.gz 1987596 WGS PHESPV1219 RANDOM 120785905;123828198 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5551ffce9a340b1a1488e8a4f6142f22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440008/ERR1440008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440008/ERR1440008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440008/PHESPV1219.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440008/PHESPV1219.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440008/ERR1440008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440008/ERR1440008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440008/PHESPV1219.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440008/PHESPV1219.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127173068;130182642 ERS1195387 ERX1510386 GENOMIC 393649225 2016-06-10 PHESPV1219 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440008/PHESPV1219.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440008/PHESPV1219.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440008 PHESPV1219 ERR1440017 PHESPV1228 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440017 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440017 0e2f533c28db96dcc11b2a64bb1f4e97;59c657dd9b3ff3c30db72a06eefce680 1313 143181579 1d121a074effbd8fe004497753b6e666;ce7739a0cc48af75320f4b808d353e8a SAMEA4024286 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440017/ERR1440017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440017/ERR1440017_2.fastq.gz 1577874 WGS PHESPV1228 RANDOM 95811259;97999419 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9de5c55cdceba0e71536c2bb4219d38 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440017/ERR1440017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440017/ERR1440017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440017/PHESPV1228.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440017/PHESPV1228.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440017/ERR1440017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440017/ERR1440017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440017/PHESPV1228.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440017/PHESPV1228.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101046203;103210132 ERS1195396 ERX1510395 GENOMIC 312673796 2016-06-10 PHESPV1228 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440017/PHESPV1228.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440017/PHESPV1228.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440017 PHESPV1228 ERR1440009 PHESPV1220 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440009 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440009 42783ee682b9fb2010e9ccdf86030913;00b1022c48c324a6ca239adb83845925 1313 125666239 c8e181de41a50199c89f8dd28182de84;335e86d972daf601b53da41988358366 SAMEA4024278 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440009/ERR1440009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440009/ERR1440009_2.fastq.gz 1445373 WGS PHESPV1220 RANDOM 83614425;86763603 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9e00c77ea2852f3199bad02884ffd1cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440009/ERR1440009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440009/ERR1440009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440009/PHESPV1220.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440009/PHESPV1220.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440009/ERR1440009_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440009/ERR1440009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440009/PHESPV1220.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440009/PHESPV1220.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88436544;91523861 ERS1195388 ERX1510387 GENOMIC 287067176 2016-06-10 PHESPV1220 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440009/PHESPV1220.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440009/PHESPV1220.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440009 PHESPV1220 ERR1440033 PHESPV1244 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440033 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440033 80031461364bf303c49ace333fe7ff6c;f7735df2409ec45f878bce90d69d825a 1313 223316232 0ea6ba3f331babf18b83acd4ad9f1fc8;bdea3d6342d6128cba2836d9f93eadb7 SAMEA4024302 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440033/ERR1440033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440033/ERR1440033_2.fastq.gz 2472763 WGS PHESPV1244 RANDOM 150534014;151020666 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e55a3fb6f6fe547cafa495c049ad0da7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440033/ERR1440033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440033/ERR1440033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440033/PHESPV1244.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440033/PHESPV1244.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440033/ERR1440033_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440033/ERR1440033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440033/PHESPV1244.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440033/PHESPV1244.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 158207689;158637887 ERS1195412 ERX1510411 GENOMIC 489517662 2016-06-10 PHESPV1244 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440033/PHESPV1244.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440033/PHESPV1244.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440033 PHESPV1244 ERR1440028 PHESPV1239 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440028 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440028 4d69f5a1f92ba0c6ab7e35ddc2f596e8;18c4075b2d848105640446bf790befe3 1313 156651206 f03847c3df9bab722edbf2fbf9ca8009;390fc42dfb15aef7fca9f7b058130911 SAMEA4024297 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440028/ERR1440028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440028/ERR1440028_2.fastq.gz 1724260 WGS PHESPV1239 RANDOM 104601421;107404211 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8a59ac598ae1b50f5917c4b36c7e8475 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440028/ERR1440028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440028/ERR1440028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440028/PHESPV1239.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440028/PHESPV1239.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440028/ERR1440028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440028/ERR1440028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440028/PHESPV1239.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440028/PHESPV1239.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110272471;113028664 ERS1195407 ERX1510406 GENOMIC 341551708 2016-06-10 PHESPV1239 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440028/PHESPV1239.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440028/PHESPV1239.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440028 PHESPV1239 ERR1440087 PHESPV1298 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440087 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440087 e7f18ef1bfdcfe8d23796602909c35e9;f903d71d4b318c5e944ab1c1439b6f4b 1313 147278690 13d7e0d764a9452ea11f50cb085f0594;67979c21235ca471d227db1c62474c9c SAMEA4024356 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440087/ERR1440087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440087/ERR1440087_2.fastq.gz 1688490 WGS PHESPV1298 RANDOM 98045544;100996410 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e16852ff7651665eabcde9668cad4f08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440087/ERR1440087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440087/ERR1440087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440087/PHESPV1298.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440087/PHESPV1298.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440087/ERR1440087_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440087/ERR1440087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440087/PHESPV1298.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440087/PHESPV1298.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103523886;106458982 ERS1195466 ERX1510465 GENOMIC 335249568 2016-06-10 PHESPV1298 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440087/PHESPV1298.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440087/PHESPV1298.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440087 PHESPV1298 ERR1440092 PHESPV1303 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440092 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440092 34628df9f100974de1901cb948860f16;8df420ef74cc7d0012d5a28f3c132cae 1313 213658837 e1cf6b74a7699792052269ebfdfa15aa;0f2f2a4da57745dfec039e56c63ea8ea SAMEA4024361 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440092/ERR1440092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440092/ERR1440092_2.fastq.gz 2433045 WGS PHESPV1303 RANDOM 139875958;147285308 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f3a6a9aeeef1c68a70ba484100afc1eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440092/ERR1440092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440092/ERR1440092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440092/PHESPV1303.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440092/PHESPV1303.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440092/ERR1440092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440092/ERR1440092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440092/PHESPV1303.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440092/PHESPV1303.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 147308808;154649220 ERS1195471 ERX1510470 GENOMIC 482342954 2016-06-10 PHESPV1303 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440092/PHESPV1303.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440092/PHESPV1303.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440092 PHESPV1303 ERR1440127 PHESPV1339 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440127 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440127 0d2d1dc0209c67b111316108a49279cd;ccfdf3798718990b3453287031d517d9 1313 126360865 646cf9b268acf3255b74e72b977c6634;6f3fd2259aa2090775f2a3fb983964b4 SAMEA4024396 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440127/ERR1440127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440127/ERR1440127_2.fastq.gz 1400527 WGS PHESPV1339 RANDOM 82838507;87534536 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96d9bccb3a541fd9b1ddab8ddd19ecdb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440127/ERR1440127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440127/ERR1440127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440127/PHESPV1339.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440127/PHESPV1339.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440127/ERR1440127_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440127/ERR1440127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440127/PHESPV1339.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440127/PHESPV1339.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87551202;92133636 ERS1195506 ERX1510505 GENOMIC 277581044 2016-06-10 PHESPV1339 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440127/PHESPV1339.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440127/PHESPV1339.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440127 PHESPV1339 ERR1440147 PHESPV1360 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440147 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440147 9e2df8fe11b057d800eb849091c58743;622eaaaf9df561650bec7a9c86371180 1313 113197292 dba57fa60ff262c8c1f82655f11197a0;23b0cfef1de11a4e8e5cbb14a41b1754 SAMEA4024416 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440147/ERR1440147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440147/ERR1440147_2.fastq.gz 1281410 WGS PHESPV1360 RANDOM 75359578;78185820 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 31a4921ea822a2e88b3b0aa0111c73d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440147/ERR1440147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440147/ERR1440147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440147/PHESPV1360.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440147/PHESPV1360.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440147/ERR1440147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440147/ERR1440147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440147/PHESPV1360.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440147/PHESPV1360.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79724435;82458336 ERS1195526 ERX1510525 GENOMIC 254418535 2016-06-10 PHESPV1360 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440147/PHESPV1360.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440147/PHESPV1360.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440147 PHESPV1360 ERR1440143 PHESPV1356 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440143 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440143 f41c6a932df76f2d825095be9dd7dcfa;42abb3e90bed23a7cce7860004490e75 1313 122868807 af55256251aeca85b689cca1004f30d7;2ecebe93b9b7e216aa4c84c1691eae4f SAMEA4024412 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440143/ERR1440143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440143/ERR1440143_2.fastq.gz 1408418 WGS PHESPV1356 RANDOM 81657336;84880661 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d026b242acca76cec7571a6dedf50887 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440143/ERR1440143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440143/ERR1440143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440143/PHESPV1356.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440143/PHESPV1356.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440143/ERR1440143_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440143/ERR1440143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440143/PHESPV1356.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440143/PHESPV1356.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86399940;89520347 ERS1195522 ERX1510521 GENOMIC 279748932 2016-06-10 PHESPV1356 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440143/PHESPV1356.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440143/PHESPV1356.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440143 PHESPV1356 ERR1440148 PHESPV1361 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440148 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440148 74a205093ff093ea7019f411cfaa9c45;64808d54659cdec8702823c0c6c2ed8c 1313 473037057 45f0179f1c5ff3c8b126ceb38bb7bcdd;c70afa66b8a19464f0e8ac52ead44406 SAMEA4024417 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440148/ERR1440148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440148/ERR1440148_2.fastq.gz 5448243 WGS PHESPV1361 RANDOM 344595994;347083869 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90ec3d634616afbc987c5dfa1a2d3607 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440148/ERR1440148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440148/ERR1440148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440148/PHESPV1361.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440148/PHESPV1361.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440148/ERR1440148_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440148/ERR1440148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440148/PHESPV1361.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440148/PHESPV1361.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 329161075;331690924 ERS1195527 ERX1510526 GENOMIC 1066113823 2016-06-10 PHESPV1361 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440148/PHESPV1361.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440148/PHESPV1361.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440148 PHESPV1361 ERR1440154 PHESPV1367 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440154 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440154 b9d077629e9d1b1a6bdc6025b375e62f;d7f11be368a4ec9a2f2beaf0474670d3 1313 93067021 3c9230bc4030f6de690b00cf92b9a6fa;9544ddcd2a159043e4540a4798df115c SAMEA4024423 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440154/ERR1440154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440154/ERR1440154_2.fastq.gz 1043143 WGS PHESPV1367 RANDOM 62137921;64038222 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 838631ad817a813dcce0ff8569e4ed6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440154/ERR1440154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440154/ERR1440154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440154/PHESPV1367.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440154/PHESPV1367.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440154/ERR1440154_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440154/ERR1440154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440154/PHESPV1367.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440154/PHESPV1367.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65765123;67574470 ERS1195533 ERX1510532 GENOMIC 207075365 2016-06-10 PHESPV1367 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440154/PHESPV1367.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440154/PHESPV1367.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440154 PHESPV1367 ERR1440156 PHESPV1369 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440156 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440156 87f88b257eacc4e9370ecb2a3d3e7d38;28423b7aa36511b792578a17a581d6f4 1313 124103112 6fe61fad3e6dbdaa97bec477d40f119b;142334b9b3cd56806650d9cc474134fa SAMEA4024425 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440156/ERR1440156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440156/ERR1440156_2.fastq.gz 1417292 WGS PHESPV1369 RANDOM 82608389;85353620 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cf4e353a6f1725b1b1e7252a7ab9696f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440156/ERR1440156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440156/ERR1440156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440156/PHESPV1369.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440156/PHESPV1369.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440156/ERR1440156_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440156/ERR1440156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440156/PHESPV1369.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440156/PHESPV1369.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87363402;90016592 ERS1195535 ERX1510534 GENOMIC 281457804 2016-06-10 PHESPV1369 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440156/PHESPV1369.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440156/PHESPV1369.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440156 PHESPV1369 ERR1440169 PHESPV1382 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440169 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440169 b41cd2d4321babecf0adfe0d404a4fa9;faaccabe39e9073784b93fdbec719663 1313 102687578 aefd848a8c4d45cb13c0c629b3e61139;f3551d7ff654e35b523d043426a22892 SAMEA4024438 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440169/ERR1440169_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440169/ERR1440169_2.fastq.gz 1147785 WGS PHESPV1382 RANDOM 67918660;71032618 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 788fcc7681577c916e1bc97ca4c02611 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440169/ERR1440169_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440169/ERR1440169_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440169/PHESPV1382.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440169/PHESPV1382.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440169/ERR1440169_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440169/ERR1440169_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440169/PHESPV1382.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440169/PHESPV1382.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71894023;74908401 ERS1195548 ERX1510547 GENOMIC 227622288 2016-06-10 PHESPV1382 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440169/PHESPV1382.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440169/PHESPV1382.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440169 PHESPV1382 ERR1440174 PHESPV1387 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440174 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440174 5e31c7f42fdfc39468562d3ffaf8c40d;e32d11784a8aea63a8d80c1e6dc502c7 1313 129030741 bad307c96e678b7dc0a1dac6bb0091be;771ad10c5359b3b637574c72f0cceddb SAMEA4024443 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440174/ERR1440174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440174/ERR1440174_2.fastq.gz 1462312 WGS PHESPV1387 RANDOM 85903560;88782595 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 805d1ae42347e866368ac74c2bf256bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440174/ERR1440174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440174/ERR1440174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440174/PHESPV1387.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440174/PHESPV1387.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440174/ERR1440174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440174/ERR1440174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440174/PHESPV1387.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440174/PHESPV1387.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90801896;93574887 ERS1195553 ERX1510552 GENOMIC 290312284 2016-06-10 PHESPV1387 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440174/PHESPV1387.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440174/PHESPV1387.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440174 PHESPV1387 ERR1440185 PHESPV1398 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440185 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440185 b828ae9ecb62d5e8021a8a6713a47891;b7456b75fbd4ef3e440416ba8130c7f7 1313 183491852 aebac282c345d48d2b60ff78f52b2637;b36f6f41b1d7f5ad0b927a2b2b242934 SAMEA4024454 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440185/ERR1440185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440185/ERR1440185_2.fastq.gz 1914123 WGS PHESPV1398 RANDOM 121369848;124002304 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ff52ce6d1179e22330a9b78b1b5d984 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440185/ERR1440185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440185/ERR1440185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440185/PHESPV1398.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440185/PHESPV1398.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440185/ERR1440185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440185/ERR1440185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440185/PHESPV1398.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440185/PHESPV1398.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127544960;130107299 ERS1195564 ERX1510563 GENOMIC 377325977 2016-06-10 PHESPV1398 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440185/PHESPV1398.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440185/PHESPV1398.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440185 PHESPV1398 ERR1440190 PHESPV1404 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440190 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440190 3c84fb7b25b82f12519930c1abb71d2b;f4f8b0f72e4d5fa6840c54c1573b7d8a 1313 152692716 fb4bf8795397ce8624ef032ed4375317;58f8648cfb7fcbc68786b2e67e3acae4 SAMEA4024459 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440190/ERR1440190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440190/ERR1440190_2.fastq.gz 1591120 WGS PHESPV1404 RANDOM 100829894;103376975 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d4116e8f7e82d119a12c1a85ebb810cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440190/ERR1440190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440190/ERR1440190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440190/PHESPV1404.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440190/PHESPV1404.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440190/ERR1440190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440190/ERR1440190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440190/PHESPV1404.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440190/PHESPV1404.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106086288;108550860 ERS1195569 ERX1510568 GENOMIC 313698746 2016-06-10 PHESPV1404 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440190/PHESPV1404.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440190/PHESPV1404.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440190 PHESPV1404 ERR1440220 PHESPV1434 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440220 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440220 59227a378eb80b97ecf84ffdd72f86a6;78c6a157cc734ffa72a461a4e513a441 1313 184241197 2dc58467d57a8fa5fe5456433e8ccd39;0cdc9b4e2f3f55f9ccc8cb9e6ead4842 SAMEA4024489 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440220/ERR1440220_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440220/ERR1440220_2.fastq.gz 2202580 WGS PHESPV1434 RANDOM 122868268;129336692 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5d88535ea2db4afd1b9e0d54f8771be3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440220/ERR1440220_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440220/ERR1440220_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440220/PHESPV1434.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440220/PHESPV1434.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440220/ERR1440220_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440220/ERR1440220_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440220/PHESPV1434.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440220/PHESPV1434.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129740821;136117422 ERS1195599 ERX1510598 GENOMIC 437183626 2016-06-10 PHESPV1434 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440220/PHESPV1434.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440220/PHESPV1434.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440220 PHESPV1434 ERR1440301 PHESPV1516 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440301 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440301 6cea19d4a420e0e42233c8df38f276cd;05d9c71e5a3c530b235ade7d026e2ffd 1313 127842585 fbb7b3c6f4e519e0e14e67118b646282;fcc50a065e8f920ae1a9cceb799e0353 SAMEA4024570 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440301/ERR1440301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440301/ERR1440301_2.fastq.gz 1536004 WGS PHESPV1516 RANDOM 86300049;89208275 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bb32fef6fc0e5ee7c4f65161c3fd193e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440301/ERR1440301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440301/ERR1440301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440301/PHESPV1516.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440301/PHESPV1516.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440301/ERR1440301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440301/ERR1440301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440301/PHESPV1516.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440301/PHESPV1516.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91387014;94288472 ERS1195680 ERX1510679 GENOMIC 305193387 2016-06-10 PHESPV1516 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440301/PHESPV1516.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440301/PHESPV1516.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440301 PHESPV1516 ERR1440630 PHESPV1845 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440630 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440630 a8facb241e12cd45ed61a4141c3ffbf3;ab498f1d17dfa9aaae81ad62294da9c1 1313 90518807 2b44fb93693816f45e4a75212c26be3b;68ddc99af842971d50b7bfbd8e4ecf3a SAMEA4024899 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440630/ERR1440630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440630/ERR1440630_2.fastq.gz 1028292 WGS PHESPV1845 RANDOM 64779852;67209860 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1f7b5cd4ec1f0ceadacaed740de6270 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440630/ERR1440630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440630/ERR1440630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440630/PHESPV1845.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440630/PHESPV1845.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440630/ERR1440630_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440630/ERR1440630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440630/PHESPV1845.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440630/PHESPV1845.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62199921;64585483 ERS1196009 ERX1511008 GENOMIC 200680584 2016-06-10 PHESPV1845 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440630/PHESPV1845.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440630/PHESPV1845.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440630 PHESPV1845 ERR1440632 PHESPV1847 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440632 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440632 6ff44dcf4b198eb1d224f7e3df5da41b;e9b6b7a728d1d7b1e6a37a144bd53b8b 1313 71979171 a9523e2961f6ece34cb042d91e0cf6b9;24b0e3323df892a9df32b852f1ba24fa SAMEA4024901 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440632/ERR1440632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440632/ERR1440632_2.fastq.gz 826313 WGS PHESPV1847 RANDOM 51724709;53391232 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff8f1700822dee6c499662fad2b5decb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440632/ERR1440632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440632/ERR1440632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440632/PHESPV1847.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440632/PHESPV1847.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440632/ERR1440632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440632/ERR1440632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440632/PHESPV1847.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440632/PHESPV1847.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49687984;51319566 ERS1196011 ERX1511010 GENOMIC 160589581 2016-06-10 PHESPV1847 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440632/PHESPV1847.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440632/PHESPV1847.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440632 PHESPV1847 ERR1440659 PHESPV1874 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440659 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440659 85453166c31e290e64ec6178679ecede;3121cc04a20e4128396516eb26de3cba 1313 70666749 14ffe291ddf331e2895c410093717440;4b4b9939b8c1206a3e5623b6a9dcf991 SAMEA4024928 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440659/ERR1440659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440659/ERR1440659_2.fastq.gz 798064 WGS PHESPV1874 RANDOM 50455153;52604377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63fb545b204e4c11875803f0e16a7d5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440659/ERR1440659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440659/ERR1440659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440659/PHESPV1874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440659/PHESPV1874.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440659/ERR1440659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440659/ERR1440659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440659/PHESPV1874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440659/PHESPV1874.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48487205;50597287 ERS1196038 ERX1511037 GENOMIC 156535813 2016-06-10 PHESPV1874 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440659/PHESPV1874.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440659/PHESPV1874.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440659 PHESPV1874 ERR1440654 PHESPV1869 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440654 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440654 a03937f155316536bf6543073c859e3d;374a16a6527cd94893f290fec59ac1a8 1313 100358758 1cec331c7fb5eb6c450fbf92ed2a18eb;288a647c5c945f9624c8282d3e3d27f1 SAMEA4024923 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440654/ERR1440654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440654/ERR1440654_2.fastq.gz 1132963 WGS PHESPV1869 RANDOM 71782400;74382013 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b07d760a64467cc5916f88bdc4a9f05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440654/ERR1440654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440654/ERR1440654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440654/PHESPV1869.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440654/PHESPV1869.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440654/ERR1440654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440654/ERR1440654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440654/PHESPV1869.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440654/PHESPV1869.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68956315;71516913 ERS1196033 ERX1511032 GENOMIC 222203375 2016-06-10 PHESPV1869 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440654/PHESPV1869.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440654/PHESPV1869.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440654 PHESPV1869 ERR1440633 PHESPV1848 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440633 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440633 b5c1348a163966abb5e6ed6c10eb5a69;5f8b10c97ab61091eaf931d043881d8d 1313 143571244 d99c46500bd3d21c390ff8b5939fce38;daf2f8963075c3bfdecbc4d4e6f816a9 SAMEA4024902 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440633/ERR1440633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440633/ERR1440633_2.fastq.gz 1631022 WGS PHESPV1848 RANDOM 102477042;106845604 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b7830e3b4ec041b8a05098344f8a6680 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440633/ERR1440633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440633/ERR1440633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440633/PHESPV1848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440633/PHESPV1848.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440633/ERR1440633_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440633/ERR1440633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440633/PHESPV1848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440633/PHESPV1848.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98227232;102539226 ERS1196012 ERX1511011 GENOMIC 319761377 2016-06-10 PHESPV1848 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440633/PHESPV1848.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440633/PHESPV1848.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440633 PHESPV1848 ERR1440653 PHESPV1868 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440653 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440653 d1a151eccf8085487e4d42024e022258;7024c35f7f2c55915e0d98c448267589 1313 76465623 bd64c7ad1cffbe2067d8963b148c89fe;17be03596880ecccb74c3cc5e52ad102 SAMEA4024922 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440653/ERR1440653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440653/ERR1440653_2.fastq.gz 867457 WGS PHESPV1868 RANDOM 54728198;56798551 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 894d217f0be398467be255c14d8d5491 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440653/ERR1440653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440653/ERR1440653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440653/PHESPV1868.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440653/PHESPV1868.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440653/ERR1440653_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440653/ERR1440653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440653/PHESPV1868.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440653/PHESPV1868.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52575549;54608890 ERS1196032 ERX1511031 GENOMIC 169533591 2016-06-10 PHESPV1868 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440653/PHESPV1868.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440653/PHESPV1868.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440653 PHESPV1868 ERR1439237 PHESPV0448 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439237 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439237 23314e4caeb7637577beba16b1e7b72c;ea34aba699fbecce92023f4930c1b8ba 1313 142080113 0585e72278a6746a65b1c6e6e7f74c5b;a9f87659fbfff6e61bc2d0d592b470b4 SAMEA4023506 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439237/ERR1439237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439237/ERR1439237_2.fastq.gz 1561711 WGS PHESPV0448 RANDOM 102722694;102316681 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4e516be0486511ee9254ef5671018d20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439237/ERR1439237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439237/ERR1439237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439237/PHESPV0448.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439237/PHESPV0448.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439237/ERR1439237_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439237/ERR1439237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439237/PHESPV0448.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439237/PHESPV0448.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98604839;98216665 ERS1194616 ERX1509615 GENOMIC 299751091 2016-06-10 PHESPV0448 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439237/PHESPV0448.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439237/PHESPV0448.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439237 PHESPV0448 ERR1439231 PHESPV0442 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439231 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439231 d5be379f3b35c903691b04b59c51e1d4;e4986ebb0b2b66f2f8dda26712b4e6a4 1313 81263606 8f98c04ccb384645b144a936ebb4824c;73049b1575130bf7747f4405e6ba10f7 SAMEA4023500 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439231/ERR1439231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439231/ERR1439231_2.fastq.gz 886143 WGS PHESPV0442 RANDOM 59098450;58240045 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2e8d787824e03559c7e3198e8e8b1a6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439231/ERR1439231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439231/ERR1439231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439231/PHESPV0442.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439231/PHESPV0442.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439231/ERR1439231_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439231/ERR1439231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439231/PHESPV0442.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439231/PHESPV0442.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56857303;56011086 ERS1194610 ERX1509609 GENOMIC 171221873 2016-06-10 PHESPV0442 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439231/PHESPV0442.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439231/PHESPV0442.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439231 PHESPV0442 ERR1439154 PHESPV0365 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439154 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439154 738860a403a446079c3ae933eb04a09f;698925ff1518f652576d2b005c4e71bb 1313 139347838 91690943dee3b8642d3f0cbfc96bf208;6fb1faa53f9fa779dbd85333a11dbf01 SAMEA4023423 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439154/ERR1439154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439154/ERR1439154_2.fastq.gz 1173855 WGS PHESPV0365 RANDOM 84322131;88904008 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b5e3e69fd8eb422a8855faffff228114 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439154/ERR1439154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439154/ERR1439154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439154/PHESPV0365.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439154/PHESPV0365.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439154/ERR1439154_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439154/ERR1439154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439154/PHESPV0365.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439154/PHESPV0365.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88263193;92851674 ERS1194533 ERX1509532 GENOMIC 229877718 2016-06-10 PHESPV0365 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439154/PHESPV0365.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439154/PHESPV0365.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439154 PHESPV0365 ERR1439229 PHESPV0440 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439229 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439229 0ca3ab3b595e8c9bad22becf00f1263e;5db9c8670a188797a5b898446c8f9812 1313 89948627 6a12355866bde44d21453399e5221e05;6aa056fc49c1f65d37c99a8e17013cee SAMEA4023498 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439229/ERR1439229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439229/ERR1439229_2.fastq.gz 970648 WGS PHESPV0440 RANDOM 64289482;65538038 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7ed9e62835e3ebb15332685e23cb73c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439229/ERR1439229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439229/ERR1439229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439229/PHESPV0440.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439229/PHESPV0440.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439229/ERR1439229_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439229/ERR1439229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439229/PHESPV0440.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439229/PHESPV0440.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61821305;63073125 ERS1194608 ERX1509607 GENOMIC 189505524 2016-06-10 PHESPV0440 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439229/PHESPV0440.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439229/PHESPV0440.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439229 PHESPV0440 ERR1439251 PHESPV0462 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439251 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439251 e173ab7bff14c71aeffdfb462161ad20;8b7855692371dc6cea36754ca2c05699 1313 41668392 696650853dbcfe3da85f7248214d50bd;83d13a78dd63188f0cfba39ce03916b6 SAMEA4023520 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439251/ERR1439251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439251/ERR1439251_2.fastq.gz 442914 WGS PHESPV0462 RANDOM 29715355;30271832 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3437746c053e8f84bb8a2590d4e85f1e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439251/ERR1439251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439251/ERR1439251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439251/PHESPV0462.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439251/PHESPV0462.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439251/ERR1439251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439251/ERR1439251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439251/PHESPV0462.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439251/PHESPV0462.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 28610656;29169360 ERS1194630 ERX1509629 GENOMIC 85971723 2016-06-10 PHESPV0462 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439251/PHESPV0462.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439251/PHESPV0462.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439251 PHESPV0462 ERR1439268 PHESPV0479 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439268 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439268 e69ca45368f94c229c47c5dc27bfa71e;5ad37bd549af0d676abd7ffc7243c6ef 1313 72164649 cae182b9356a78eed55008bef5efd802;ebe6a5041358ce2c4ec176331140693a SAMEA4023537 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439268/ERR1439268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439268/ERR1439268_2.fastq.gz 783782 WGS PHESPV0479 RANDOM 51994887;52107591 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 220aac6dc281c4413c58a475fc032ecb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439268/ERR1439268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439268/ERR1439268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439268/PHESPV0479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439268/PHESPV0479.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439268/ERR1439268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439268/ERR1439268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439268/PHESPV0479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439268/PHESPV0479.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50022768;50143862 ERS1194647 ERX1509646 GENOMIC 151518543 2016-06-10 PHESPV0479 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439268/PHESPV0479.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439268/PHESPV0479.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439268 PHESPV0479 ERR1439270 PHESPV0481 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439270 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439270 765f9f2ec21c27d830e3ba31c05e4ec6;6d3ae17f9919833be22b6b91f9123523 1313 101695629 04e2f6c2361f83f69e9ba8af052a9c23;731c764adc69040b19a11ea835725286 SAMEA4023539 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439270/ERR1439270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439270/ERR1439270_2.fastq.gz 1107923 WGS PHESPV0481 RANDOM 73332840;73608677 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 498e56a9b4714ef7b1f83f7d1a7a16ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439270/ERR1439270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439270/ERR1439270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439270/PHESPV0481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439270/PHESPV0481.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439270/ERR1439270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439270/ERR1439270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439270/PHESPV0481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439270/PHESPV0481.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70523104;70807777 ERS1194649 ERX1509648 GENOMIC 215648866 2016-06-10 PHESPV0481 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439270/PHESPV0481.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439270/PHESPV0481.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439270 PHESPV0481 ERR1439279 PHESPV0490 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439279 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439279 20fad31e1b193748c8e8c92519f0568d;21d674ccb59f1a7e5efc52f394f2f9a2 1313 186815859 c787fbfd5b71f957d6e668a4112bdcbf;9611d550c4aaf16a44bceca41d20fa35 SAMEA4023548 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439279/ERR1439279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439279/ERR1439279_2.fastq.gz 2053185 WGS PHESPV0490 RANDOM 135509028;134179686 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 040e2294602c962c0655e93afea802a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439279/ERR1439279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439279/ERR1439279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439279/PHESPV0490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439279/PHESPV0490.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439279/ERR1439279_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439279/ERR1439279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439279/PHESPV0490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439279/PHESPV0490.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130192833;128884382 ERS1194658 ERX1509657 GENOMIC 399064832 2016-06-10 PHESPV0490 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439279/PHESPV0490.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439279/PHESPV0490.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439279 PHESPV0490 ERR1439283 PHESPV0494 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439283 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439283 6c5aeb714e833bb8e51d9611c2abe7af;bd98771f21ff120df14e191ba9d378c2 1313 217563605 b49a10663f197a38043029c30aace552;ff03d0987a0fce1528c93ea3620b9d58 SAMEA4023552 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439283/ERR1439283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439283/ERR1439283_2.fastq.gz 2415531 WGS PHESPV0494 RANDOM 157732471;155401659 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 61c4c4e2b33d72ec7cfca1a3012274cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439283/ERR1439283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439283/ERR1439283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439283/PHESPV0494.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439283/PHESPV0494.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439283/ERR1439283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439283/ERR1439283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439283/PHESPV0494.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439283/PHESPV0494.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 151608534;149279191 ERS1194662 ERX1509661 GENOMIC 462302722 2016-06-10 PHESPV0494 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439283/PHESPV0494.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439283/PHESPV0494.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439283 PHESPV0494 ERR1439273 PHESPV0484 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439273 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439273 5c6da10aef2d790037250d96df5c1acb;b573095524ca6d79cd0c80555d9cc250 1313 65724429 06ad47325f4753b13382d0a1be57f522;4b740af5350e24f8b1f3b7d82cdf6d52 SAMEA4023542 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439273/ERR1439273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439273/ERR1439273_2.fastq.gz 716814 WGS PHESPV0484 RANDOM 47427906;47432648 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 83a400a98aa0b775a67ddc084f9077c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439273/ERR1439273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439273/ERR1439273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439273/PHESPV0484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439273/PHESPV0484.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439273/ERR1439273_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439273/ERR1439273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439273/PHESPV0484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439273/PHESPV0484.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 45618868;45633676 ERS1194652 ERX1509651 GENOMIC 138126913 2016-06-10 PHESPV0484 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439273/PHESPV0484.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439273/PHESPV0484.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439273 PHESPV0484 ERR1439289 PHESPV0500 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439289 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439289 6476920ca73072ba9f19c60e40e4455c;57ab48d2be93e190d9edb6a53de62fb6 1313 96894745 ccc8cca03c3e8bdcbd8140539d334d1b;c79ab541d1ea86cb3ad158593d3cf9e0 SAMEA4023558 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439289/ERR1439289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439289/ERR1439289_2.fastq.gz 1060799 WGS PHESPV0500 RANDOM 69855937;69984642 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee8d6b6ea2ce3c64e2e024d7c18f8ad9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439289/ERR1439289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439289/ERR1439289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439289/PHESPV0500.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439289/PHESPV0500.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439289/ERR1439289_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439289/ERR1439289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439289/PHESPV0500.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439289/PHESPV0500.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67121426;67259663 ERS1194668 ERX1509667 GENOMIC 204024041 2016-06-10 PHESPV0500 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439289/PHESPV0500.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439289/PHESPV0500.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439289 PHESPV0500 ERR1439295 PHESPV0506 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439295 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439295 aa3ebba21c9b76b152f75fc34816dfd6;122dd4feb98d92c84cdc6f0a4007a3d2 1313 136507172 22f13f2f38189bf3abd2d5f2b8677a63;3a6d394cd079948b248887c5c203bd92 SAMEA4023564 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439295/ERR1439295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439295/ERR1439295_2.fastq.gz 1517479 WGS PHESPV0506 RANDOM 99336012;97832681 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9ca1ffd96c0c8bfd30288b0ac25636aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439295/ERR1439295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439295/ERR1439295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439295/PHESPV0506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439295/PHESPV0506.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439295/ERR1439295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439295/ERR1439295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439295/PHESPV0506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439295/PHESPV0506.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95397923;93918191 ERS1194674 ERX1509673 GENOMIC 290017713 2016-06-10 PHESPV0506 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439295/PHESPV0506.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439295/PHESPV0506.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439295 PHESPV0506 ERR1439316 PHESPV0527 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439316 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439316 43dac684bd2ee0cb8b3e5e594114e36d;c15c744d58044cda0bf74eaa1a00e653 1313 128491684 698082820d7ab285606912d924541dbf;44f60ce1bdb5077362dd6764ccb2b46b SAMEA4023585 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439316/ERR1439316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439316/ERR1439316_2.fastq.gz 1394596 WGS PHESPV0527 RANDOM 92501316;92608545 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a5558be2e2ae11c2a7c57f4f3f484901 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439316/ERR1439316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439316/ERR1439316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439316/PHESPV0527.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439316/PHESPV0527.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439316/ERR1439316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439316/ERR1439316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439316/PHESPV0527.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439316/PHESPV0527.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88892407;89003915 ERS1194695 ERX1509694 GENOMIC 270364142 2016-06-10 PHESPV0527 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439316/PHESPV0527.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439316/PHESPV0527.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439316 PHESPV0527 ERR1439297 PHESPV0508 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439297 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439297 e5ae2c22dba0420b6d7a204bc23dc611;5d0e6529e7c922f9da110499fef01bc2 1313 39528226 6869f241669d48558529e8da9388ad52;a3c332e57951cd689341da3f154c2e0a SAMEA4023566 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439297/ERR1439297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439297/ERR1439297_2.fastq.gz 426875 WGS PHESPV0508 RANDOM 28258734;28807789 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a28457ad34bb768a8a6caed61d7504bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439297/ERR1439297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439297/ERR1439297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439297/PHESPV0508.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439297/PHESPV0508.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439297/ERR1439297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439297/ERR1439297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439297/PHESPV0508.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439297/PHESPV0508.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 27182979;27733234 ERS1194676 ERX1509675 GENOMIC 82600300 2016-06-10 PHESPV0508 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439297/PHESPV0508.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439297/PHESPV0508.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439297 PHESPV0508 ERR1439308 PHESPV0519 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439308 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439308 0af2262111f5fc2037dd23c40ba786c0;8d8d8d5a901d8879705fabd85ac0a359 1313 137356486 9993b67c7508bbc666928ae8a4ea59c2;b17455a494353e23b4b7fd9711a83a98 SAMEA4023577 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439308/ERR1439308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439308/ERR1439308_2.fastq.gz 1503933 WGS PHESPV0519 RANDOM 99591941;99055264 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4e000452da3002b0b7ba961ebfb2c40a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439308/ERR1439308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439308/ERR1439308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439308/PHESPV0519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439308/PHESPV0519.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439308/ERR1439308_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439308/ERR1439308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439308/PHESPV0519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439308/PHESPV0519.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95709833;95195881 ERS1194687 ERX1509686 GENOMIC 293581035 2016-06-10 PHESPV0519 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439308/PHESPV0519.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439308/PHESPV0519.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439308 PHESPV0519 ERR1439317 PHESPV0528 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439317 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439317 ba7109024b39759756e490803e72fc58;69d35d1eeb4fe11ea5c5670607540c73 1313 139970889 61491e2572f7d7568987c76b221ae006;dd43ccda9f0089ff5b86eba0bf487550 SAMEA4023586 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439317/ERR1439317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439317/ERR1439317_2.fastq.gz 1560425 WGS PHESPV0528 RANDOM 101924154;100310884 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6d5dd0e938ec497518eec98e2b4dc3fc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439317/ERR1439317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439317/ERR1439317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439317/PHESPV0528.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439317/PHESPV0528.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439317/ERR1439317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439317/ERR1439317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439317/PHESPV0528.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439317/PHESPV0528.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97844307;96256312 ERS1194696 ERX1509695 GENOMIC 297714330 2016-06-10 PHESPV0528 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439317/PHESPV0528.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439317/PHESPV0528.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439317 PHESPV0528 ERR1439336 PHESPV0547 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439336 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439336 ecd2d73484b1a5086e2e41d74c2d1968;8937bdccf56df01885cd1cc6017a8673 1313 147739216 7e860fb7e6e1dd786e365c19ab4f41c7;6f74d7428da4586073846fa203e6d902 SAMEA4023605 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439336/ERR1439336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439336/ERR1439336_2.fastq.gz 1611498 WGS PHESPV0547 RANDOM 107349410;105839377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5f32922ba1b25f294ca78c5c293bdfc8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439336/ERR1439336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439336/ERR1439336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439336/PHESPV0547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439336/PHESPV0547.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439336/ERR1439336_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439336/ERR1439336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439336/PHESPV0547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439336/PHESPV0547.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103088350;101599625 ERS1194715 ERX1509714 GENOMIC 312977442 2016-06-10 PHESPV0547 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439336/PHESPV0547.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439336/PHESPV0547.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439336 PHESPV0547 ERR1439337 PHESPV0548 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439337 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439337 b3bb2f7c24a3ea0186fa31db8e43007b;47bc4944690f19d76d9f47522da7e952 1313 131854693 205a2fb3e1c72dc5cf37fc1da4bf3939;693ddce11c13fa8649b04b4e83cfe0f2 SAMEA4023606 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439337/ERR1439337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439337/ERR1439337_2.fastq.gz 1457849 WGS PHESPV0548 RANDOM 95220903;95925705 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline db8ca9a223bef50b83ec9fab8ba1548f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439337/ERR1439337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439337/ERR1439337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439337/PHESPV0548.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439337/PHESPV0548.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439337/ERR1439337_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439337/ERR1439337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439337/PHESPV0548.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439337/PHESPV0548.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91482455;92207228 ERS1194716 ERX1509715 GENOMIC 285747754 2016-06-10 PHESPV0548 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439337/PHESPV0548.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439337/PHESPV0548.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439337 PHESPV0548 ERR1439342 PHESPV0553 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439342 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439342 4815aee4dc6020213567d4ab097756a7;a9dfab8ee4a2edb4a8b43e98143caf87 1313 100071085 171e41e0bd7b7cafce53f96c920376e8;9a2a29607d6fd0fa5115075e8b4f010c SAMEA4023611 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439342/ERR1439342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439342/ERR1439342_2.fastq.gz 1118062 WGS PHESPV0553 RANDOM 72373942;72736747 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 073cb2114e4353fb7a1806ca16a49df6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439342/ERR1439342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439342/ERR1439342_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439342/PHESPV0553.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439342/PHESPV0553.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439342/ERR1439342_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439342/ERR1439342_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439342/PHESPV0553.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439342/PHESPV0553.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69544613;69927394 ERS1194721 ERX1509720 GENOMIC 216440524 2016-06-10 PHESPV0553 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439342/PHESPV0553.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439342/PHESPV0553.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439342 PHESPV0553 ERR1439339 PHESPV0550 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439339 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439339 5c61a32a2c9ce393b394b5211134547a;371712f0efaf40e565359138ef378bd3 1313 106440097 3c46dd02eee761712093d373cb4028c6;846eda86f6a5c9c130424fb5e55c1073 SAMEA4023608 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439339/ERR1439339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439339/ERR1439339_2.fastq.gz 1186540 WGS PHESPV0550 RANDOM 76658635;77447274 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6fd2b008305cb83bcf62999f55c1933f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439339/ERR1439339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439339/ERR1439339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439339/PHESPV0550.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439339/PHESPV0550.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439339/ERR1439339_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439339/ERR1439339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439339/PHESPV0550.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439339/PHESPV0550.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73620423;74422742 ERS1194718 ERX1509717 GENOMIC 229139455 2016-06-10 PHESPV0550 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439339/PHESPV0550.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439339/PHESPV0550.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439339 PHESPV0550 ERR1439351 PHESPV0562 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439351 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439351 3f5755780b2f179a638bc88603c90b89;30e8c536a027d876f81eee11212479ef 1313 102452156 10d9d5c822e81bb671408fbe6fc35156;b92697b3779349dc0e9e3127fcc784fa SAMEA4023620 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439351/ERR1439351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439351/ERR1439351_2.fastq.gz 1136853 WGS PHESPV0562 RANDOM 74136778;74512158 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c26d6a9b16aead8b4c6e70af7d15de72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439351/ERR1439351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439351/ERR1439351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439351/PHESPV0562.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439351/PHESPV0562.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439351/ERR1439351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439351/ERR1439351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439351/PHESPV0562.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439351/PHESPV0562.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71238834;71633728 ERS1194730 ERX1509729 GENOMIC 221920006 2016-06-10 PHESPV0562 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439351/PHESPV0562.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439351/PHESPV0562.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439351 PHESPV0562 ERR1439354 PHESPV0565 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439354 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439354 fee5d999a0db94522a0da397467abbb2;3af13acd4dcb78466bb9d1db11eae4b2 1313 117813954 5f1529f7be14660ec22fbcb9f4a74fd0;6505deceba11ad599a55e884f88cb6e8 SAMEA4023623 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439354/ERR1439354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439354/ERR1439354_2.fastq.gz 1309575 WGS PHESPV0565 RANDOM 85512005;85350036 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 20178e39bd101e4ec096f1109a6ede3f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439354/ERR1439354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439354/ERR1439354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439354/PHESPV0565.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439354/PHESPV0565.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439354/ERR1439354_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439354/ERR1439354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439354/PHESPV0565.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439354/PHESPV0565.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82201538;82060331 ERS1194733 ERX1509732 GENOMIC 255881681 2016-06-10 PHESPV0565 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439354/PHESPV0565.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439354/PHESPV0565.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439354 PHESPV0565 ERR1439364 PHESPV0575 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439364 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439364 c3b791de99b40658018aacfd71b5bae3;6698853708e3e734949d14ecd4db2c0b 1313 112484854 c85912a4a054392f952162a56ff0ff0f;3a35cfec196d3685c5cea45a4d04c73c SAMEA4023633 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439364/ERR1439364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439364/ERR1439364_2.fastq.gz 1255931 WGS PHESPV0575 RANDOM 81606735;81555947 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 224a4688b5e52f60727eae3356811c13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439364/ERR1439364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439364/ERR1439364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439364/PHESPV0575.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439364/PHESPV0575.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439364/ERR1439364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439364/ERR1439364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439364/PHESPV0575.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439364/PHESPV0575.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78418999;78388886 ERS1194743 ERX1509742 GENOMIC 244581239 2016-06-10 PHESPV0575 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439364/PHESPV0575.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439364/PHESPV0575.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439364 PHESPV0575 ERR1439369 PHESPV0580 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439369 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439369 104ade3e835b21782697c08c876489d6;e03032f720fe9f99d0a998e1e3c910f1 1313 84030818 3d8ea74ef1f41141b04bc63c418af617;227f2c1a290a854d57c565e80e884f2f SAMEA4023638 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439369/ERR1439369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439369/ERR1439369_2.fastq.gz 920151 WGS PHESPV0580 RANDOM 60243635;61320969 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 711fc3f6b48e96cfa94a868d86c2d3b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439369/ERR1439369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439369/ERR1439369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439369/PHESPV0580.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439369/PHESPV0580.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439369/ERR1439369_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439369/ERR1439369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439369/PHESPV0580.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439369/PHESPV0580.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57906166;58993464 ERS1194748 ERX1509747 GENOMIC 179077682 2016-06-10 PHESPV0580 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439369/PHESPV0580.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439369/PHESPV0580.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439369 PHESPV0580 ERR1439370 PHESPV0581 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439370 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439370 bb0e1ab41f6f635e4d9a3fe7f5ce35f8;6daa7ac824d12483ea9c794169153903 1313 91041481 00974531fcb7ae1e5f6532ca9e92db8c;e4ee3c11f0faaaa00d9d93f2895c50b4 SAMEA4023639 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439370/ERR1439370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439370/ERR1439370_2.fastq.gz 1015464 WGS PHESPV0581 RANDOM 66127648;66072762 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b1203d4e48f69ca4e0d0b1a0b71ef18e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439370/ERR1439370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439370/ERR1439370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439370/PHESPV0581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439370/PHESPV0581.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439370/ERR1439370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439370/ERR1439370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439370/PHESPV0581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439370/PHESPV0581.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63544573;63514786 ERS1194749 ERX1509748 GENOMIC 197789515 2016-06-10 PHESPV0581 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439370/PHESPV0581.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439370/PHESPV0581.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439370 PHESPV0581 ERR1439372 PHESPV0583 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439372 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439372 060ece1ebae1510f276d1b5dc0c7f4b1;760a0969603ade38f83cc3164cc5c6d4 1313 89386407 285f4a72169eda912047b6b7cc588326;1312e99e90663cf1bdd843b005ce45ff SAMEA4023641 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439372/ERR1439372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439372/ERR1439372_2.fastq.gz 1003715 WGS PHESPV0583 RANDOM 64967048;64791587 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ad815867b4993139316b18d77ac00f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439372/ERR1439372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439372/ERR1439372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439372/PHESPV0583.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439372/PHESPV0583.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439372/ERR1439372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439372/ERR1439372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439372/PHESPV0583.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439372/PHESPV0583.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62398765;62244484 ERS1194751 ERX1509750 GENOMIC 193543549 2016-06-10 PHESPV0583 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439372/PHESPV0583.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439372/PHESPV0583.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439372 PHESPV0583 ERR1439374 PHESPV0585 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439374 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439374 ca76d00595d14b9778cd13af414cd984;be735b0acc005f7779d587b92fc9e997 1313 82715191 06858bc14d60ec7327e4a1aac7d2cf08;25e7ad4749abba06af0f75c12176e64c SAMEA4023643 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439374/ERR1439374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439374/ERR1439374_2.fastq.gz 916696 WGS PHESPV0585 RANDOM 59973263;60068110 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b3ebe61d1c061a6e335bc8dbe702a5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439374/ERR1439374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439374/ERR1439374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439374/PHESPV0585.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439374/PHESPV0585.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439374/ERR1439374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439374/ERR1439374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439374/PHESPV0585.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439374/PHESPV0585.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57647477;57761815 ERS1194753 ERX1509752 GENOMIC 179018321 2016-06-10 PHESPV0585 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439374/PHESPV0585.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439374/PHESPV0585.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439374 PHESPV0585 ERR1439387 PHESPV0598 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439387 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439387 813ae3fd142850d84462e1279b75b5e1;110ad8537e85c085cccd615d0e7e14c1 1313 108042997 3222058cc5f9e02155607e6ec963e6a1;64d2d876af01f23c0d5d1b344b5596b0 SAMEA4023656 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439387/ERR1439387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439387/ERR1439387_2.fastq.gz 1203315 WGS PHESPV0598 RANDOM 78332736;78345558 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline de687f96e532cf2af5256a1b1263936f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439387/ERR1439387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439387/ERR1439387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439387/PHESPV0598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439387/PHESPV0598.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439387/ERR1439387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439387/ERR1439387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439387/PHESPV0598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439387/PHESPV0598.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75312013;75341054 ERS1194766 ERX1509765 GENOMIC 234415199 2016-06-10 PHESPV0598 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439387/PHESPV0598.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439387/PHESPV0598.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439387 PHESPV0598 ERR1439381 PHESPV0592 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439381 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439381 1a5040607f6322198d24fd108f0aaf78;648726f4dc95dd6945d24be9d006ff21 1313 135658789 9ea2c5d6f2d803a80f58aebaf3be0ef2;a2ca81a00b41c76ff2dc8bd12a1669bf SAMEA4023650 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439381/ERR1439381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439381/ERR1439381_2.fastq.gz 1525904 WGS PHESPV0592 RANDOM 98653537;98159834 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b7b7247c57a489cccde9cd68fa877e84 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439381/ERR1439381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439381/ERR1439381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439381/PHESPV0592.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439381/PHESPV0592.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439381/ERR1439381_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439381/ERR1439381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439381/PHESPV0592.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439381/PHESPV0592.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94698880;94231602 ERS1194760 ERX1509759 GENOMIC 295038534 2016-06-10 PHESPV0592 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439381/PHESPV0592.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439381/PHESPV0592.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439381 PHESPV0592 ERR1439392 PHESPV0603 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439392 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439392 8f72976632605b807ecd5b12caf54247;f555fa264ad99c5f9992a7264b9fe214 1313 107611485 b7311aedcaa94cf65e25a5a11ab30748;4ccc3a32b317acd0ba221e74bac0c9f3 SAMEA4023661 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439392/ERR1439392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439392/ERR1439392_2.fastq.gz 1182349 WGS PHESPV0603 RANDOM 77593300;78308486 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6125bd0a20a291b30e66f74590fe1d2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439392/ERR1439392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439392/ERR1439392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439392/PHESPV0603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439392/PHESPV0603.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439392/ERR1439392_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439392/ERR1439392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439392/PHESPV0603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439392/PHESPV0603.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74607377;75336475 ERS1194771 ERX1509770 GENOMIC 231870080 2016-06-10 PHESPV0603 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439392/PHESPV0603.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439392/PHESPV0603.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439392 PHESPV0603 ERR1439395 PHESPV0606 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439395 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439395 072f89923faa0d2c8f426239a355adea;45c76d76655871a8c91859c278df3f2b 1313 105851165 6d993176e65699ebdcf9a0163758a5e0;e66fce44c5758d922f8b0ca155bb02ac SAMEA4023664 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439395/ERR1439395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439395/ERR1439395_2.fastq.gz 1187216 WGS PHESPV0606 RANDOM 77112756;76645888 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9f3ba5ebd5b728eec59510f107a7ae09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439395/ERR1439395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439395/ERR1439395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439395/PHESPV0606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439395/PHESPV0606.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439395/ERR1439395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439395/ERR1439395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439395/PHESPV0606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439395/PHESPV0606.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74136505;73696191 ERS1194774 ERX1509773 GENOMIC 231284276 2016-06-10 PHESPV0606 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439395/PHESPV0606.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439395/PHESPV0606.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439395 PHESPV0606 ERR1439404 PHESPV0615 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439404 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439404 d9b4014e560c191aca597d6c1d722b37;e1f6b80f954104b834444651baa7655a 1313 111174606 cf8471a400eeccaede889017bf2098d4;5f5559b2ecda62fd689ed899ecde4e06 SAMEA4023673 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439404/ERR1439404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439404/ERR1439404_2.fastq.gz 1232247 WGS PHESPV0615 RANDOM 80655409;80567154 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0ebef8300abe7aed63ac9aeec345636f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439404/ERR1439404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439404/ERR1439404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439404/PHESPV0615.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439404/PHESPV0615.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439404/ERR1439404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439404/ERR1439404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439404/PHESPV0615.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439404/PHESPV0615.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77571659;77502847 ERS1194783 ERX1509782 GENOMIC 241648545 2016-06-10 PHESPV0615 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439404/PHESPV0615.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439404/PHESPV0615.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439404 PHESPV0615 ERR1439407 PHESPV0618 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439407 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439407 298d0ef7fe794ad86ce913396871e654;ce31c45003a536b311ec7fe55fcafe7b 1313 123973125 f4a782a009136f79b346036bd5118c34;0e85ce8d07d28849e6f2ede90889ed50 SAMEA4023676 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439407/ERR1439407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439407/ERR1439407_2.fastq.gz 1360926 WGS PHESPV0618 RANDOM 88320682;90695506 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f77de951fc4584c6a72bf199e2dacd1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439407/ERR1439407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439407/ERR1439407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439407/PHESPV0618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439407/PHESPV0618.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439407/ERR1439407_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439407/ERR1439407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439407/PHESPV0618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439407/PHESPV0618.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84884372;87259684 ERS1194786 ERX1509785 GENOMIC 264705777 2016-06-10 PHESPV0618 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439407/PHESPV0618.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439407/PHESPV0618.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439407 PHESPV0618 ERR1439409 PHESPV0620 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439409 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439409 1759337d928388a82395dcaa548af7b0;2019bf4809875b109873c995712e75fa 1313 103759240 ebd6d5905efc2cdc021f0da6c900becd;cdb3586cbf2ddc7e1b1ad4da4f2807c2 SAMEA4023678 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439409/ERR1439409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439409/ERR1439409_2.fastq.gz 1170331 WGS PHESPV0620 RANDOM 75644756;75094029 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 840e4d13609114eba40f0abffc0d1871 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439409/ERR1439409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439409/ERR1439409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439409/PHESPV0620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439409/PHESPV0620.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439409/ERR1439409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439409/ERR1439409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439409/PHESPV0620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439409/PHESPV0620.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72690961;72166513 ERS1194788 ERX1509787 GENOMIC 226839173 2016-06-10 PHESPV0620 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439409/PHESPV0620.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439409/PHESPV0620.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439409 PHESPV0620 ERR1439408 PHESPV0619 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439408 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439408 cd1ea5159abf9b9eb88fcede1c3e57ed;04f898f17ff98c6ae164f7a3bb213d41 1313 116397534 29f16ff51c7cec6f2525618066a7e8e5;cf89e3a145e210b9dfce78f0a14e1fe1 SAMEA4023677 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439408/ERR1439408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439408/ERR1439408_2.fastq.gz 1263992 WGS PHESPV0619 RANDOM 82350850;85451862 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc90206abacc2dec54d5cb054263678f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439408/ERR1439408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439408/ERR1439408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439408/PHESPV0619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439408/PHESPV0619.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439408/ERR1439408_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439408/ERR1439408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439408/PHESPV0619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439408/PHESPV0619.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79162899;82257970 ERS1194787 ERX1509786 GENOMIC 246615914 2016-06-10 PHESPV0619 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439408/PHESPV0619.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439408/PHESPV0619.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439408 PHESPV0619 ERR1439417 PHESPV0628 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439417 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439417 28225021baaebaa95507214e21c3dbca;2a9b1310bc13716aaf5be0a6c83e2290 1313 114429580 40f9a3395967da29061731664fdef3fd;df019f0f5f9e671e3b43c220e25e6cca SAMEA4023686 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439417/ERR1439417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439417/ERR1439417_2.fastq.gz 1266598 WGS PHESPV0628 RANDOM 81602819;83631743 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline adf64b44f3ac379a86efedb635a6d37d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439417/ERR1439417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439417/ERR1439417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439417/PHESPV0628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439417/PHESPV0628.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439417/ERR1439417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439417/ERR1439417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439417/PHESPV0628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439417/PHESPV0628.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78431350;80463411 ERS1194796 ERX1509795 GENOMIC 244612802 2016-06-10 PHESPV0628 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439417/PHESPV0628.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439417/PHESPV0628.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439417 PHESPV0628 ERR1439436 PHESPV0647 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439436 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439436 f1dae74f54c9740121dff4085d7c58c2;3403dd852272b223b57bcdf4dc81b98b 1313 94027407 0eb589a7fb96daff1c7f57fe48a5d517;33efc36f2076cb352ffc73e7b4c75dcf SAMEA4023705 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439436/ERR1439436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439436/ERR1439436_2.fastq.gz 1037948 WGS PHESPV0647 RANDOM 67520290;68641441 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 00a143181de10cd2685d7831de2b3134 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439436/ERR1439436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439436/ERR1439436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439436/PHESPV0647.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439436/PHESPV0647.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439436/ERR1439436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439436/ERR1439436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439436/PHESPV0647.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439436/PHESPV0647.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64851619;65984841 ERS1194815 ERX1509814 GENOMIC 201549699 2016-06-10 PHESPV0647 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439436/PHESPV0647.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439436/PHESPV0647.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439436 PHESPV0647 ERR1439418 PHESPV0629 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439418 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439418 34b256b24874def94489bda1cd5150fc;00a5abdbb37f9c95e3b69a29b7ca435d 1313 123300874 f8bc48ff0c474275e291bf7b198bf82c;e798ecf18657b4d19e09284bf5e0909a SAMEA4023687 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439418/ERR1439418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439418/ERR1439418_2.fastq.gz 1332476 WGS PHESPV0629 RANDOM 86678072;90591145 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3bfc88342bf5ab6bffb4f7f9af4be52d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439418/ERR1439418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439418/ERR1439418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439418/PHESPV0629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439418/PHESPV0629.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439418/ERR1439418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439418/ERR1439418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439418/PHESPV0629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439418/PHESPV0629.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83306791;87209109 ERS1194797 ERX1509796 GENOMIC 258825629 2016-06-10 PHESPV0629 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439418/PHESPV0629.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439418/PHESPV0629.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439418 PHESPV0629 ERR1439438 PHESPV0649 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439438 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439438 22c8ae0103b86b09f5ecd7d8374172fb;5719477cf97791e9b495c7e7965f5faa 1313 126843016 2e309125299825597fc2fe8557af269a;5b5c361be5e33420fd22a38d3d144ee3 SAMEA4023707 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439438/ERR1439438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439438/ERR1439438_2.fastq.gz 1401381 WGS PHESPV0649 RANDOM 90435303;92725240 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 473576a6d22dcc896bdbcb6b062f774a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439438/ERR1439438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439438/ERR1439438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439438/PHESPV0649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439438/PHESPV0649.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439438/ERR1439438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439438/ERR1439438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439438/PHESPV0649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439438/PHESPV0649.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86865680;89160235 ERS1194817 ERX1509816 GENOMIC 270728223 2016-06-10 PHESPV0649 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439438/PHESPV0649.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439438/PHESPV0649.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439438 PHESPV0649 ERR1439439 PHESPV0650 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439439 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439439 8e8ca5686c268eee16ecd86a0fad3eff;19ddf43b0b0a4a5ecad6c3bfff8d9831 1313 92904630 aa41d0d77028bfa961f686353ee6b1e1;10d525e4a580eecac453bddcf847654f SAMEA4023708 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439439/ERR1439439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439439/ERR1439439_2.fastq.gz 1080441 WGS PHESPV0650 RANDOM 61660543;64703774 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ab88ecba184b881af3f4958b8137a84 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439439/ERR1439439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439439/ERR1439439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439439/PHESPV0650.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439439/PHESPV0650.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439439/ERR1439439_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439439/ERR1439439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439439/PHESPV0650.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439439/PHESPV0650.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65404565;68352834 ERS1194818 ERX1509817 GENOMIC 214259638 2016-06-10 PHESPV0650 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439439/PHESPV0650.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439439/PHESPV0650.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439439 PHESPV0650 ERR1439445 PHESPV0656 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439445 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439445 f7a1f719848de6bac04170a307d17c0e;bfc209030db8d00c7a730dab1d30c654 1313 82943341 418208e9cfb4dccf5a0bce4f9d00c79d;1037e72ba0b4d744cbc60e73b6072918 SAMEA4023714 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439445/ERR1439445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439445/ERR1439445_2.fastq.gz 908454 WGS PHESPV0656 RANDOM 59644916;60599999 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ace3d20c75bad7a07ad2eb9292bb8bef ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439445/ERR1439445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439445/ERR1439445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439445/PHESPV0656.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439445/PHESPV0656.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439445/ERR1439445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439445/ERR1439445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439445/PHESPV0656.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439445/PHESPV0656.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57351887;58322309 ERS1194824 ERX1509823 GENOMIC 178585391 2016-06-10 PHESPV0656 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439445/PHESPV0656.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439445/PHESPV0656.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439445 PHESPV0656 ERR1439581 PHESPV0792 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439581 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439581 44a0fe6a89338fa182957838f89091ec;4806e26e5bbad744dc64ed7508475bec 1313 363571840 c8ad9abac3697f129514ea1f0ed14a7e;fa30da8f3dc6c7c2d5f8e3581534377c SAMEA4023850 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439581/ERR1439581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439581/ERR1439581_2.fastq.gz 2839300 WGS PHESPV0792 RANDOM 238009001;240909204 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c16ff74d7862a91ea6c942c8623020c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439581/ERR1439581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439581/ERR1439581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439581/PHESPV0792.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439581/PHESPV0792.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439581/ERR1439581_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439581/ERR1439581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439581/PHESPV0792.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439581/PHESPV0792.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 230661822;233535345 ERS1194960 ERX1509959 GENOMIC 549341981 2016-06-10 PHESPV0792 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439581/PHESPV0792.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439581/PHESPV0792.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439581 PHESPV0792 ERR1439701 PHESPV0912 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439701 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439701 bd210695dba8a60163c1c963bc90bb31;7068d7df8a5aa3a53a0d628dc9f884ad 1313 157811017 b510d8e9dbe6844984f11ded47144bd0;9fe84894bd09c91f69c8c7f63958c6f5 SAMEA4023970 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439701/ERR1439701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439701/ERR1439701_2.fastq.gz 1771596 WGS PHESPV0912 RANDOM 114613439;115242499 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2284fe10def051172a88eab67230e342 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439701/ERR1439701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439701/ERR1439701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439701/PHESPV0912.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439701/PHESPV0912.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439701/ERR1439701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439701/ERR1439701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439701/PHESPV0912.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439701/PHESPV0912.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109973073;110621887 ERS1195080 ERX1510079 GENOMIC 344883597 2016-06-10 PHESPV0912 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439701/PHESPV0912.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439701/PHESPV0912.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439701 PHESPV0912 ERR1440661 PHESPV1876 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440661 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440661 dfed0f850fe8ead702a8c5054922158f;92855ba61f9eb75bd1790cbe74adc393 1313 105021050 d243d408179ef2f846b234da91f8cdf1;d9eb3174189e0b2e0d48b0f224196406 SAMEA4024930 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440661/ERR1440661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440661/ERR1440661_2.fastq.gz 1178637 WGS PHESPV1876 RANDOM 73869175;78563539 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline db299aa307a7ca36e2de98748700f393 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440661/ERR1440661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440661/ERR1440661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440661/PHESPV1876.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440661/PHESPV1876.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440661/ERR1440661_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440661/ERR1440661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440661/PHESPV1876.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440661/PHESPV1876.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70921054;75558936 ERS1196040 ERX1511039 GENOMIC 230512282 2016-06-10 PHESPV1876 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440661/PHESPV1876.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440661/PHESPV1876.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440661 PHESPV1876 ERR1439111 PHESPV0322 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439111 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439111 d77ea5128934aaf0b7f5519b2ae4ca89;90eea3f5702358f811c6e873054f24e3 1313 122333054 f634330360cbc851e2ec92238d718654;1216ad1b9beb97f6fa3c842a1165838b SAMEA4023380 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439111/ERR1439111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439111/ERR1439111_2.fastq.gz 1485028 WGS PHESPV0322 RANDOM 81252556;84793457 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 51e66357b4c9a82f803cf7ef851a1b19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439111/ERR1439111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439111/ERR1439111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439111/PHESPV0322.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439111/PHESPV0322.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439111/ERR1439111_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439111/ERR1439111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439111/PHESPV0322.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439111/PHESPV0322.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86190660;89740631 ERS1194490 ERX1509489 GENOMIC 290340440 2016-06-10 PHESPV0322 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439111/PHESPV0322.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439111/PHESPV0322.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439111 PHESPV0322 ERR1439227 PHESPV0438 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439227 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439227 0a1926f0f2a9418c711e71cc0be7c33d;7352b76dafeeed11be1a0eb9e48e8dc6 1313 161777149 e04d685c3b4347096e39d390a4515c06;9453383c4160bd383baf0bf04735f74e SAMEA4023496 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439227/ERR1439227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439227/ERR1439227_2.fastq.gz 1990823 WGS PHESPV0438 RANDOM 109374018;110290723 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee9622079c20004bd02dc87782e23b73 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439227/ERR1439227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439227/ERR1439227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439227/PHESPV0438.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439227/PHESPV0438.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439227/ERR1439227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439227/ERR1439227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439227/PHESPV0438.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439227/PHESPV0438.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115686603;116576209 ERS1194606 ERX1509605 GENOMIC 389632109 2016-06-10 PHESPV0438 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439227/PHESPV0438.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439227/PHESPV0438.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439227 PHESPV0438 ERR1439326 PHESPV0537 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439326 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439326 e38d6547be6a607d5e6d9d3369f29ab7;0e25b5ea3ad818832e481a534764bb3a 1313 84063998 0a23d4e7816b6d7be79a347e228d525c;4cba495dc82db9d3fc3bb25740bf7318 SAMEA4023595 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439326/ERR1439326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439326/ERR1439326_2.fastq.gz 1037292 WGS PHESPV0537 RANDOM 57418746;57991219 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5ebb221106bd27657b6de0c45fb27ca ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439326/ERR1439326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439326/ERR1439326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439326/PHESPV0537.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439326/PHESPV0537.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439326/ERR1439326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439326/ERR1439326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439326/PHESPV0537.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439326/PHESPV0537.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61040874;61614892 ERS1194705 ERX1509704 GENOMIC 203380311 2016-06-10 PHESPV0537 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439326/PHESPV0537.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439326/PHESPV0537.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439326 PHESPV0537 ERR1439724 PHESPV0935 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439724 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439724 c3743c808efd85d43a1424f303a6f19a;65a011a4039d357ed1e8fbf6ce79c1fa 1313 182793152 033ffe5ed3cb8bbf64ab01b53b52c3c5;d0c6e32c181d15e15b30b61adeacc845 SAMEA4023993 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439724/ERR1439724_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439724/ERR1439724_2.fastq.gz 2001722 WGS PHESPV0935 RANDOM 131293172;133148411 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b15183e7c561967d25bed966bfe3e7c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439724/ERR1439724_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439724/ERR1439724_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439724/PHESPV0935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439724/PHESPV0935.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439724/ERR1439724_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439724/ERR1439724_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439724/PHESPV0935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439724/PHESPV0935.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126026351;127885657 ERS1195103 ERX1510102 GENOMIC 389182978 2016-06-10 PHESPV0935 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439724/PHESPV0935.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439724/PHESPV0935.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439724 PHESPV0935 ERR1439862 PHESPV1073 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439862 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439862 f6ab0829a6b33ca8b7c55740e6f2415b;01f86120bf48e091721c29ad7ac45af3 1313 215021936 8a75a06367adb0d4cf24376592d8c4eb;8e60a12dc0197f92522b4d591d4596c5 SAMEA4024131 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439862/ERR1439862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439862/ERR1439862_2.fastq.gz 2305725 WGS PHESPV1073 RANDOM 143165125;145858911 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7866011d47b935ce74c31af15e7c04dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439862/ERR1439862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439862/ERR1439862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439862/PHESPV1073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439862/PHESPV1073.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439862/ERR1439862_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439862/ERR1439862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439862/PHESPV1073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439862/PHESPV1073.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 150384729;153097719 ERS1195241 ERX1510240 GENOMIC 455259317 2016-06-10 PHESPV1073 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439862/PHESPV1073.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439862/PHESPV1073.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439862 PHESPV1073 ERR1439950 PHESPV1161 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439950 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439950 ec7b7f93b15751d047201edd22d6a4e3;b2256da239923493fe6478b237507826 1313 107772680 02ea36430a380f491783b3a0d3784889;726da4a4a58a45695b040f593377fc5f SAMEA4024219 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439950/ERR1439950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439950/ERR1439950_2.fastq.gz 1187251 WGS PHESPV1161 RANDOM 70756813;74032014 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab95ce2792b94dd8ee144d24450d4163 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439950/ERR1439950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439950/ERR1439950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439950/PHESPV1161.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439950/PHESPV1161.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439950/ERR1439950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439950/ERR1439950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439950/PHESPV1161.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439950/PHESPV1161.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74810928;78029822 ERS1195329 ERX1510328 GENOMIC 235242262 2016-06-10 PHESPV1161 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439950/PHESPV1161.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439950/PHESPV1161.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439950 PHESPV1161 ERR1440603 PHESPV1818 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440603 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440603 19f014e4871d3aac2aba0b26926a8109;74557c7ee0c44d2108e9a7f9931f0410 1313 118366065 e5fa161b8225494ce73f95adc2b19a15;0b815b2d37d149c1acc0f62e9b5a4f82 SAMEA4024872 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440603/ERR1440603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440603/ERR1440603_2.fastq.gz 1355376 WGS PHESPV1818 RANDOM 84677422;88067916 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 567e0ba113e90076640f6f637e45cf5e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440603/ERR1440603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440603/ERR1440603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440603/PHESPV1818.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440603/PHESPV1818.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440603/ERR1440603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440603/ERR1440603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440603/PHESPV1818.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440603/PHESPV1818.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81263677;84605351 ERS1195982 ERX1510981 GENOMIC 265044944 2016-06-10 PHESPV1818 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440603/PHESPV1818.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440603/PHESPV1818.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440603 PHESPV1818 ERR1439983 PHESPV1194 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439983 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439983 8610a0c7ab761aaa7d5019b575b0ede2;581610b7a0e77be2157b669913ba6849 1313 156224408 ebb58140a00cd47cea542e6603e5fa47;63eeab6a78a493b4c549fdb1fcad6cec SAMEA4024252 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439983/ERR1439983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439983/ERR1439983_2.fastq.gz 1810246 WGS PHESPV1194 RANDOM 105324488;106738637 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline de63cae607525af692cf3c2b59fe1939 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439983/ERR1439983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439983/ERR1439983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439983/PHESPV1194.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439983/PHESPV1194.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439983/ERR1439983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439983/ERR1439983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439983/PHESPV1194.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439983/PHESPV1194.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111185855;112590178 ERS1195362 ERX1510361 GENOMIC 359460421 2016-06-10 PHESPV1194 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439983/PHESPV1194.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439983/PHESPV1194.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439983 PHESPV1194 ERR1440018 PHESPV1229 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440018 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440018 951fb77fcbbb56601d7c5872cc327178;ab692ee6ba7e88cc609bb8e210d598f3 1313 171747890 5e067b04f3e3d1cb6b160c75cbd57fe3;12d146bee5baddbdb3b1bd0c20101aa1 SAMEA4024287 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440018/ERR1440018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440018/ERR1440018_2.fastq.gz 1883884 WGS PHESPV1229 RANDOM 115141963;116984335 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 776f2bf6ce3e3cf1615bf0f0fa67a323 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440018/ERR1440018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440018/ERR1440018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440018/PHESPV1229.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440018/PHESPV1229.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440018/ERR1440018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440018/ERR1440018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440018/PHESPV1229.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440018/PHESPV1229.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121242125;123063085 ERS1195397 ERX1510396 GENOMIC 373275959 2016-06-10 PHESPV1229 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440018/PHESPV1229.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440018/PHESPV1229.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440018 PHESPV1229 ERR1440257 PHESPV1472 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440257 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440257 40c3fd212b84d87fbc1cf03a38a832be;fea807882778ae51e1a30871b093053b 1313 149905478 aba26a40f7ee96db185026d399f7a2c0;54b63bbe9134cdd072b74fdfb62746d2 SAMEA4024526 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440257/ERR1440257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440257/ERR1440257_2.fastq.gz 1803145 WGS PHESPV1472 RANDOM 101525840;104346302 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ca60ffb877c413b9b734bbe341aa191 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440257/ERR1440257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440257/ERR1440257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440257/PHESPV1472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440257/PHESPV1472.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440257/ERR1440257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440257/ERR1440257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440257/PHESPV1472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440257/PHESPV1472.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107347786;110159685 ERS1195636 ERX1510635 GENOMIC 358306521 2016-06-10 PHESPV1472 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440257/PHESPV1472.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440257/PHESPV1472.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440257 PHESPV1472 ERR1440258 PHESPV1473 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440258 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440258 7d6db695fc196a4daa211ceb5afe3ea0;2979b50f82918b511be381503a049836 1313 116771755 ce0d68938c0fa4001b7d621cb31f887b;11629621b197e853b39026c2f9946e89 SAMEA4024527 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440258/ERR1440258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440258/ERR1440258_2.fastq.gz 1398761 WGS PHESPV1473 RANDOM 79200952;81062266 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad7a2e2f95fc1f2d2403cbfc970f927c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440258/ERR1440258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440258/ERR1440258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440258/PHESPV1473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440258/PHESPV1473.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440258/ERR1440258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440258/ERR1440258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440258/PHESPV1473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440258/PHESPV1473.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83838891;85686021 ERS1195637 ERX1510636 GENOMIC 277964194 2016-06-10 PHESPV1473 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440258/PHESPV1473.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440258/PHESPV1473.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440258 PHESPV1473 ERR1438877 PHESPV0087 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438877 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438877 35588b994333bf48fe9d9288d20c4b96;0abc5ee9920161775df9517d610673f6 1313 118224319 359331f2b605e951477f9c072f7005e9;6f2934b0320ba0b595c1ef21a58b7d06 SAMEA4023146 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438877/ERR1438877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438877/ERR1438877_2.fastq.gz 1363124 WGS PHESPV0087 RANDOM 77287719;83598326 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6f3e7959a9edb8327d62441b9c6d69b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438877/ERR1438877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438877/ERR1438877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438877/PHESPV0087.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438877/PHESPV0087.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438877/ERR1438877_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438877/ERR1438877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438877/PHESPV0087.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438877/PHESPV0087.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81855430;88125599 ERS1194256 ERX1509255 GENOMIC 270675787 2016-06-10 PHESPV0087 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438877/PHESPV0087.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438877/PHESPV0087.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438877 PHESPV0087 ERR1438923 PHESPV0133 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438923 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438923 71e6f3f5725f659c7a28a7a487e87f11;c4c717ac2bfee7cbc5f7ad74184f28b2 1313 228931656 cdcec0b31b26d2afb32ba4e4e552ec98;ee2b1491e389de7f05fd17fe00d8d5f6 SAMEA4023192 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438923/ERR1438923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438923/ERR1438923_2.fastq.gz 2571092 WGS PHESPV0133 RANDOM 153448333;156221388 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3f76ddde549fcd818f9079b0073f6a30 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438923/ERR1438923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438923/ERR1438923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438923/PHESPV0133.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438923/PHESPV0133.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438923/ERR1438923_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438923/ERR1438923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438923/PHESPV0133.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438923/PHESPV0133.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 161322156;164116815 ERS1194302 ERX1509301 GENOMIC 510316919 2016-06-10 PHESPV0133 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438923/PHESPV0133.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438923/PHESPV0133.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438923 PHESPV0133 ERR1438996 PHESPV0207 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438996 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438996 56ba81c8fe136a0a007abf6be6bc7554;f7c412286d32782827f55f652980d232 1313 175951569 0f8748a178cdf269b6db31436f73b5cd;82670eaae06de10cc634a0ae391d5253 SAMEA4023265 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438996/ERR1438996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438996/ERR1438996_2.fastq.gz 2057223 WGS PHESPV0207 RANDOM 117712995;120295201 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cc442715a6bea39e48523a4e62baf956 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438996/ERR1438996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438996/ERR1438996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438996/PHESPV0207.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438996/PHESPV0207.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438996/ERR1438996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438996/ERR1438996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438996/PHESPV0207.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438996/PHESPV0207.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124204898;126697383 ERS1194375 ERX1509374 GENOMIC 408304291 2016-06-10 PHESPV0207 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438996/PHESPV0207.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438996/PHESPV0207.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438996 PHESPV0207 ERR1438871 PHESPV0081 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438871 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438871 61ae51577e9f6169e5ff2d105bcae035;1f34a8f6b1bcb0c0384f992712f79cda 1313 97830745 745b0e3338ed300d390b44f0e808b2d2;dfd0c8b902d2c7e713040730c4ca0ec0 SAMEA4023140 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438871/ERR1438871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438871/ERR1438871_2.fastq.gz 1144429 WGS PHESPV0081 RANDOM 65297621;68405810 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50544f3491545b563f05bafce8a41ae3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438871/ERR1438871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438871/ERR1438871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438871/PHESPV0081.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438871/PHESPV0081.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438871/ERR1438871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438871/ERR1438871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438871/PHESPV0081.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438871/PHESPV0081.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69225157;72309707 ERS1194250 ERX1509249 GENOMIC 227518292 2016-06-10 PHESPV0081 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438871/PHESPV0081.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438871/PHESPV0081.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438871 PHESPV0081 ERR1439174 PHESPV0385 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439174 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439174 d4b2a9fd16a1ed77c9039fe8f87f755a;394f23b6ecbeac2ba2b8adde7af78603 1313 157194667 2cea00ee57fe2d487cccb19f23e51564;d9225fa9da44064fcdabfdda2a214f3f SAMEA4023443 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439174/ERR1439174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439174/ERR1439174_2.fastq.gz 1711867 WGS PHESPV0385 RANDOM 113160375;113398313 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6fbee62fef5f6753cf27e6353437771 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439174/ERR1439174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439174/ERR1439174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439174/PHESPV0385.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439174/PHESPV0385.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439174/ERR1439174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439174/ERR1439174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439174/PHESPV0385.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439174/PHESPV0385.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108627106;108880730 ERS1194553 ERX1509552 GENOMIC 330436674 2016-06-10 PHESPV0385 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439174/PHESPV0385.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439174/PHESPV0385.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439174 PHESPV0385 ERR1439177 PHESPV0388 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439177 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439177 5e23762d39dbac15ab867c6d2adcab56;a5d55d533aa36a51990b1f5d420d4222 1313 158551250 133915c1d1c38df6d4823e55e58e1524;8b7422f2d969c3a40d6c1eb5a3e2e9c6 SAMEA4023446 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439177/ERR1439177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439177/ERR1439177_2.fastq.gz 1738482 WGS PHESPV0388 RANDOM 114868133;114134759 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ac04e6275604eca8aacee13035d71c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439177/ERR1439177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439177/ERR1439177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439177/PHESPV0388.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439177/PHESPV0388.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439177/ERR1439177_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439177/ERR1439177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439177/PHESPV0388.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439177/PHESPV0388.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110250782;109540170 ERS1194556 ERX1509555 GENOMIC 337350859 2016-06-10 PHESPV0388 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439177/PHESPV0388.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439177/PHESPV0388.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439177 PHESPV0388 ERR1439249 PHESPV0460 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439249 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439249 4a1aa8ea16d0562fb9817c33673b3650;c2388dc0da77d32120d0e7152970a479 1313 104501154 fafa345230c467a2fcd22c8258798d58;190737b6921d6cbe53bac92701d6bd12 SAMEA4023518 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439249/ERR1439249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439249/ERR1439249_2.fastq.gz 1141617 WGS PHESPV0460 RANDOM 75788697;75179440 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b62210b53ab27d575337902312f2ad6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439249/ERR1439249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439249/ERR1439249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439249/PHESPV0460.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439249/PHESPV0460.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439249/ERR1439249_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439249/ERR1439249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439249/PHESPV0460.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439249/PHESPV0460.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72902134;72307001 ERS1194628 ERX1509627 GENOMIC 222056422 2016-06-10 PHESPV0460 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439249/PHESPV0460.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439249/PHESPV0460.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439249 PHESPV0460 ERR1440610 PHESPV1825 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440610 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440610 56280c239238b83cc01602e9ecb68c2f;216ab103e4a39804288186bdeaaefe15 1313 66127942 5275f536e00a4fc88163a3580a43a713;37c73e62c12b95fefebd809c6947e44d SAMEA4024879 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440610/ERR1440610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440610/ERR1440610_2.fastq.gz 725937 WGS PHESPV1825 RANDOM 46405785;49207340 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ce2abb85cec2369af459e49e803b0f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440610/ERR1440610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440610/ERR1440610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440610/PHESPV1825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440610/PHESPV1825.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440610/ERR1440610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440610/ERR1440610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440610/PHESPV1825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440610/PHESPV1825.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 44614866;47372478 ERS1195989 ERX1510988 GENOMIC 141338935 2016-06-10 PHESPV1825 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440610/PHESPV1825.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440610/PHESPV1825.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440610 PHESPV1825 ERR1439277 PHESPV0488 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439277 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439277 5b4b5eeeaa40b388498b9b827b27f29c;e9a0e296369731d4963589f69dcbe068 1313 114235197 b580d97eac993d7d68fdc5824aecb696;ea8b73a08c76e3e65f58ac6a6338e3ec SAMEA4023546 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439277/ERR1439277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439277/ERR1439277_2.fastq.gz 1247782 WGS PHESPV0488 RANDOM 81756064;82667359 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6da230d90919b2e5fe0f64e7ee0b938d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439277/ERR1439277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439277/ERR1439277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439277/PHESPV0488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439277/PHESPV0488.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439277/ERR1439277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439277/ERR1439277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439277/PHESPV0488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439277/PHESPV0488.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78586853;79501758 ERS1194656 ERX1509655 GENOMIC 239161060 2016-06-10 PHESPV0488 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439277/PHESPV0488.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439277/PHESPV0488.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439277 PHESPV0488 ERR1439259 PHESPV0470 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439259 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439259 fcf25a9f05f932266907a587599210c6;9f635a10b8234ff9741c59450979fdfa 1313 97241064 21e2d9cdff2011fd74bb5c0875f5c5fc;f7d1560e2b5fc32ce54af47830840ad1 SAMEA4023528 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439259/ERR1439259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439259/ERR1439259_2.fastq.gz 1045345 WGS PHESPV0470 RANDOM 69471198;70742084 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b9750cd1fe03b2e7ce879ec7035d13e7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439259/ERR1439259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439259/ERR1439259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439259/PHESPV0470.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439259/PHESPV0470.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439259/ERR1439259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439259/ERR1439259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439259/PHESPV0470.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439259/PHESPV0470.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66825732;68101314 ERS1194638 ERX1509637 GENOMIC 204488054 2016-06-10 PHESPV0470 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439259/PHESPV0470.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439259/PHESPV0470.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439259 PHESPV0470 ERR1440611 PHESPV1826 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440611 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440611 1402f0624f4a5333eba1cd17800b1666;655dfa1f630eb49942c437dce9b2ec8a 1313 84557144 fd498f73965d7749ab006aaa33c4c2d3;ed3618a9696492df578575f351f50a54 SAMEA4024880 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440611/ERR1440611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440611/ERR1440611_2.fastq.gz 963899 WGS PHESPV1826 RANDOM 60671514;62702706 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42dc943a52722ec277cd35bc53725c5f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440611/ERR1440611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440611/ERR1440611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440611/PHESPV1826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440611/PHESPV1826.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440611/ERR1440611_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440611/ERR1440611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440611/PHESPV1826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440611/PHESPV1826.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58257272;60253411 ERS1195990 ERX1510989 GENOMIC 187796444 2016-06-10 PHESPV1826 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440611/PHESPV1826.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440611/PHESPV1826.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440611 PHESPV1826 ERR1440614 PHESPV1829 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440614 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440614 4fb30e0c978c42640cfd8b2e6fd14101;a438b96cef93de1beb7558794e1b841f 1313 146209855 dd0770c4f3739e37d779bdab367994a3;b44983dd93d35f9a3574e297311f50d4 SAMEA4024883 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440614/ERR1440614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440614/ERR1440614_2.fastq.gz 1660232 WGS PHESPV1829 RANDOM 104720138;108357282 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c3e05b489d9f0906fe91025c3e74b9f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440614/ERR1440614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440614/ERR1440614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440614/PHESPV1829.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440614/PHESPV1829.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440614/ERR1440614_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440614/ERR1440614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440614/PHESPV1829.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440614/PHESPV1829.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100412919;103995844 ERS1195993 ERX1510992 GENOMIC 325111763 2016-06-10 PHESPV1829 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440614/PHESPV1829.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440614/PHESPV1829.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440614 PHESPV1829 ERR1440634 PHESPV1849 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440634 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440634 eb80c35cfd52540f87b57353c29a3b3d;1b5a24397f363eae216355412f8b0d8e 1313 91343397 dc857371a67323ee7cff4f7ebca4a27c;2038e4f94260b88d4ec1c2622722c06b SAMEA4024903 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440634/ERR1440634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440634/ERR1440634_2.fastq.gz 1020395 WGS PHESPV1849 RANDOM 64237587;68339515 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50a82bb1ac478f114c694cf0def8bcb1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440634/ERR1440634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440634/ERR1440634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440634/PHESPV1849.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440634/PHESPV1849.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440634/ERR1440634_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440634/ERR1440634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440634/PHESPV1849.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440634/PHESPV1849.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61678135;65726738 ERS1196013 ERX1511012 GENOMIC 199663097 2016-06-10 PHESPV1849 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440634/PHESPV1849.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440634/PHESPV1849.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440634 PHESPV1849 ERR1440635 PHESPV1850 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440635 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440635 c21564c061868517d1eb73d5456a075f;1dcc6a9c565ca16bb8f6459a088520b8 1313 78672570 b31a286919624d93f11ff45fbd3e1644;8b57294315f8fa6467ef83b3556e9608 SAMEA4024904 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440635/ERR1440635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440635/ERR1440635_2.fastq.gz 894705 WGS PHESPV1850 RANDOM 56256808;58565939 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 123dbb92b99d66addecc6faf570ce372 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440635/ERR1440635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440635/ERR1440635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440635/PHESPV1850.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440635/PHESPV1850.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440635/ERR1440635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440635/ERR1440635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440635/PHESPV1850.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440635/PHESPV1850.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54035231;56302449 ERS1196014 ERX1511013 GENOMIC 175315610 2016-06-10 PHESPV1850 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440635/PHESPV1850.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440635/PHESPV1850.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440635 PHESPV1850 ERR1440640 PHESPV1855 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440640 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440640 840e047dd214bc392abffc825defc65d;cd138881c9cad1eb5b42bddbdadc4e88 1313 80482288 e2e552709c47bef0bb5bbcdfced35a34;5b806c7c2d43050e9e1ec375f7a6e61c SAMEA4024909 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440640/ERR1440640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440640/ERR1440640_2.fastq.gz 902208 WGS PHESPV1855 RANDOM 56698448;60343084 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 56872b6ada55fb63910a8736edb9d3ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440640/ERR1440640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440640/ERR1440640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440640/PHESPV1855.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440640/PHESPV1855.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440640/ERR1440640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440640/ERR1440640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440640/PHESPV1855.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440640/PHESPV1855.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54455742;58052940 ERS1196019 ERX1511018 GENOMIC 176661392 2016-06-10 PHESPV1855 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440640/PHESPV1855.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440640/PHESPV1855.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440640 PHESPV1855 ERR1440651 PHESPV1866 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440651 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440651 1ea3e3c826207c8d28072282238bf7ea;81f120d1793da09a99aef957b108c074 1313 156326392 b094d3b803974c9326eddeb0d73460e3;9df3cddcba279c217164d77ff7eca870 SAMEA4024920 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440651/ERR1440651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440651/ERR1440651_2.fastq.gz 1762209 WGS PHESPV1866 RANDOM 111715412;115801905 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e16de2d1d701ab61b80c6b2bf51dab2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440651/ERR1440651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440651/ERR1440651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440651/PHESPV1866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440651/PHESPV1866.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440651/ERR1440651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440651/ERR1440651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440651/PHESPV1866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440651/PHESPV1866.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107119162;111161271 ERS1196030 ERX1511029 GENOMIC 345744045 2016-06-10 PHESPV1866 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440651/PHESPV1866.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440651/PHESPV1866.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440651 PHESPV1866 ERR1440652 PHESPV1867 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440652 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440652 99e71c4b83f915bc6a88a228badeead8;4d406c35b3c1e36e9bc3556e261d4dc1 1313 132908118 69a3976a63dc184733601c67d25ee263;75efc564882a17d60a78123666c9b761 SAMEA4024921 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440652/ERR1440652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440652/ERR1440652_2.fastq.gz 1504692 WGS PHESPV1867 RANDOM 95043340;98582518 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f0749b35fca5dc82b189694c719814b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440652/ERR1440652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440652/ERR1440652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440652/PHESPV1867.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440652/PHESPV1867.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440652/ERR1440652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440652/ERR1440652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440652/PHESPV1867.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440652/PHESPV1867.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91203250;94694113 ERS1196031 ERX1511030 GENOMIC 295145621 2016-06-10 PHESPV1867 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440652/PHESPV1867.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440652/PHESPV1867.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440652 PHESPV1867 ERR1440658 PHESPV1873 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440658 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440658 d6579d494201b96ab7855696b34997aa;568418db71c6e59fb109ec428e925eb7 1313 102960323 993eebbb9f8520e5369e47bc9286e69a;f1d1c48921a1375fec3306ad7439351d SAMEA4024927 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440658/ERR1440658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440658/ERR1440658_2.fastq.gz 1148713 WGS PHESPV1873 RANDOM 72436828;76790955 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 99906f535adb4a0a77e1ccd0f4dc8bfd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440658/ERR1440658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440658/ERR1440658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440658/PHESPV1873.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440658/PHESPV1873.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440658/ERR1440658_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440658/ERR1440658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440658/PHESPV1873.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440658/PHESPV1873.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69571729;73876801 ERS1196037 ERX1511036 GENOMIC 224309116 2016-06-10 PHESPV1873 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440658/PHESPV1873.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440658/PHESPV1873.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440658 PHESPV1873 ERR1438808 PHESPV0018 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438808 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438808 fd98b818d75afe4cf7e5a47a71f1c6af;2563e4f0320d5c69e26c778695997999 1313 115164817 e8b91ff066aafefb81ab6b662af6a782;11baa739b911d16416d6f3fc461d08aa SAMEA4023077 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438808/ERR1438808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438808/ERR1438808_2.fastq.gz 1440020 WGS PHESPV0018 RANDOM 77771103;80615321 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6c81e340b34f114edae82caf5626e501 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438808/ERR1438808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438808/ERR1438808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438808/PHESPV0018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438808/PHESPV0018.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438808/ERR1438808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438808/ERR1438808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438808/PHESPV0018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438808/PHESPV0018.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82606872;85417273 ERS1194187 ERX1509186 GENOMIC 282549447 2016-06-10 PHESPV0018 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438808/PHESPV0018.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438808/PHESPV0018.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438808 PHESPV0018 ERR1439427 PHESPV0638 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439427 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439427 2b96d602c2cb0a8aa482306de203b8d9;043970fafe952602f42be3d40df44a9d 1313 228372809 589a67b741fd335933184906cab8b254;6a780de7ee065b7c4eeb08139f5fbad7 SAMEA4023696 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439427/ERR1439427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439427/ERR1439427_2.fastq.gz 2861068 WGS PHESPV0638 RANDOM 154327146;160586150 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e4c175d69a9c1ba8fd4e2efc064af22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439427/ERR1439427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439427/ERR1439427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439427/PHESPV0638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439427/PHESPV0638.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439427/ERR1439427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439427/ERR1439427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439427/PHESPV0638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439427/PHESPV0638.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 163066929;169310272 ERS1194806 ERX1509805 GENOMIC 561390312 2016-06-10 PHESPV0638 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439427/PHESPV0638.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439427/PHESPV0638.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439427 PHESPV0638 ERR1439533 PHESPV0744 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439533 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439533 df03cbcccac524c58b692a924504c3ad;354534e0b42a4a6febf64f8c850c0c72 1313 130510372 f9c576f11b88c774b79029801dd9a2b7;aeb8987393bc63f5483c812c731e2532 SAMEA4023802 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439533/ERR1439533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439533/ERR1439533_2.fastq.gz 1566375 WGS PHESPV0744 RANDOM 88530679;89300694 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d64d1c82cc94a734fd19445e1059b53f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439533/ERR1439533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439533/ERR1439533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439533/PHESPV0744.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439533/PHESPV0744.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439533/ERR1439533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439533/ERR1439533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439533/PHESPV0744.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439533/PHESPV0744.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93758981;94537611 ERS1194912 ERX1509911 GENOMIC 305506537 2016-06-10 PHESPV0744 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439533/PHESPV0744.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439533/PHESPV0744.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439533 PHESPV0744 ERR1439683 PHESPV0894 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439683 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439683 f179f851ee66b14f13bd154819740a53;a6b00e5604d7f4f1727e043f9299c150 1313 175352294 31be9599c1f30a46b11e952d14a474f6;e7668ac8d945364cf2fd853aae68d1f6 SAMEA4023952 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439683/ERR1439683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439683/ERR1439683_2.fastq.gz 1981900 WGS PHESPV0894 RANDOM 127573284;127417775 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 28b0699d3b17ea79deba03de15ea1c69 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439683/ERR1439683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439683/ERR1439683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439683/PHESPV0894.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439683/PHESPV0894.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439683/ERR1439683_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439683/ERR1439683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439683/PHESPV0894.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439683/PHESPV0894.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122401075;122269333 ERS1195062 ERX1510061 GENOMIC 381861290 2016-06-10 PHESPV0894 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439683/PHESPV0894.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439683/PHESPV0894.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439683 PHESPV0894 ERR1439779 PHESPV0990 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439779 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439779 e92b266bb13dcb502b727bfbd3cf1fb0;8b2ce317ff705e2a761acb219d960051 1313 205224124 11cab132cdc104a368b81a68d2d2eb2e;797040ce2b6bb3ad3b70f2e2938e5004 SAMEA4024048 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439779/ERR1439779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439779/ERR1439779_2.fastq.gz 2216026 WGS PHESPV0990 RANDOM 134557118;139020059 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 019ca4f56decf62e7bee06eafdfc7830 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439779/ERR1439779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439779/ERR1439779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439779/PHESPV0990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439779/PHESPV0990.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439779/ERR1439779_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439779/ERR1439779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439779/PHESPV0990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439779/PHESPV0990.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141474402;145752309 ERS1195158 ERX1510157 GENOMIC 437271499 2016-06-10 PHESPV0990 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439779/PHESPV0990.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439779/PHESPV0990.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439779 PHESPV0990 ERR1439898 PHESPV1109 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439898 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439898 9bce11d56d50e0623576eb421300622f;d5a7a859fe05bb1807cb1044f6e0a26a 1313 143909968 579ba8ebe17f046d9b09d610cc6e3d1c;13d3c931c8cf97fb4a16eba100b43af3 SAMEA4024167 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439898/ERR1439898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439898/ERR1439898_2.fastq.gz 1597497 WGS PHESPV1109 RANDOM 95774532;98072461 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f3b549a59abf2d9fb82adf58523533d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439898/ERR1439898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439898/ERR1439898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439898/PHESPV1109.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439898/PHESPV1109.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439898/ERR1439898_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439898/ERR1439898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439898/PHESPV1109.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439898/PHESPV1109.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101027817;103322308 ERS1195277 ERX1510276 GENOMIC 316614653 2016-06-10 PHESPV1109 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439898/PHESPV1109.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439898/PHESPV1109.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439898 PHESPV1109 ERR1439864 PHESPV1075 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439864 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439864 0a358b153bfb5ae69e4cef2a6bcc527b;2f365d63471749975cadbd06427f6bdb 1313 195902514 58124bb61275bda08d05c67a56153b0e;fd968e0a9187105fa4cd2d60988507c2 SAMEA4024133 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439864/ERR1439864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439864/ERR1439864_2.fastq.gz 2088012 WGS PHESPV1075 RANDOM 129446600;131373445 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54cc779443c16a8ac55e1167148f9903 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439864/ERR1439864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439864/ERR1439864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439864/PHESPV1075.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439864/PHESPV1075.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439864/ERR1439864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439864/ERR1439864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439864/PHESPV1075.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439864/PHESPV1075.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135973313;137906155 ERS1195243 ERX1510242 GENOMIC 411803798 2016-06-10 PHESPV1075 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439864/PHESPV1075.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439864/PHESPV1075.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439864 PHESPV1075 ERR1439930 PHESPV1141 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439930 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439930 4af50d8076083ec5e0a834d9bc370381;74b85931580baca3651ba0637123126b 1313 102825826 536a8a33386846b0187340abb74e2566;ec652320d2a5ba1224c4d4def3c62042 SAMEA4024199 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439930/ERR1439930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439930/ERR1439930_2.fastq.gz 1217350 WGS PHESPV1141 RANDOM 68694120;71553251 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd26ef73b20b9fe2ca505a8c0012846a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439930/ERR1439930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439930/ERR1439930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439930/PHESPV1141.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439930/PHESPV1141.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439930/ERR1439930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439930/ERR1439930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439930/PHESPV1141.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439930/PHESPV1141.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72843295;75691897 ERS1195309 ERX1510308 GENOMIC 241989323 2016-06-10 PHESPV1141 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439930/PHESPV1141.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439930/PHESPV1141.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439930 PHESPV1141 ERR1439943 PHESPV1154 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439943 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439943 80c4149ef56c457c7e06bc90eade7b63;0b6fe0da07760dff68d08d6045cc2d0d 1313 133935790 dbf90a5c470ae671f03767e09e733034;d92a972b3a9e71ade57bf3e5e5a95cee SAMEA4024212 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439943/ERR1439943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439943/ERR1439943_2.fastq.gz 1507392 WGS PHESPV1154 RANDOM 89332286;91446754 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d0dcb42f53b65ec78f48d6dc9259423f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439943/ERR1439943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439943/ERR1439943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439943/PHESPV1154.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439943/PHESPV1154.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439943/ERR1439943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439943/ERR1439943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439943/PHESPV1154.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439943/PHESPV1154.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94363804;96467030 ERS1195322 ERX1510321 GENOMIC 299341270 2016-06-10 PHESPV1154 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439943/PHESPV1154.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439943/PHESPV1154.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439943 PHESPV1154 ERR1439954 PHESPV1165 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439954 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439954 b19c3a38df40575e72594e4a537ca769;16b8f7df039d617779c82e8a007ee09b 1313 109784680 710a48d588bf3af4e8bc72bf6eb94cd8;352c887d4e02dcd84f2c43d9a2b7d806 SAMEA4024223 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439954/ERR1439954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439954/ERR1439954_2.fastq.gz 1221447 WGS PHESPV1165 RANDOM 73434176;74754651 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6ddc5ea770d057011c61ef37db615e4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439954/ERR1439954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439954/ERR1439954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439954/PHESPV1165.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439954/PHESPV1165.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439954/ERR1439954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439954/ERR1439954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439954/PHESPV1165.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439954/PHESPV1165.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77594222;78897188 ERS1195333 ERX1510332 GENOMIC 242492840 2016-06-10 PHESPV1165 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439954/PHESPV1165.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439954/PHESPV1165.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439954 PHESPV1165 ERR1439969 PHESPV1180 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439969 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439969 45c62f53533f01f9d254cf7c63e3853a;ab56a68df329cde70001cdddbb1adcb8 1313 101278243 fa0a7a30036c9eed73d63f54dcdb0f17;60e813647c6422054065245e0bc4df67 SAMEA4024238 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439969/ERR1439969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439969/ERR1439969_2.fastq.gz 1150054 WGS PHESPV1180 RANDOM 66548042;70366146 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5b35ff44fde526010e2ce0ffd42e3137 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439969/ERR1439969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439969/ERR1439969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439969/PHESPV1180.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439969/PHESPV1180.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439969/ERR1439969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439969/ERR1439969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439969/PHESPV1180.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439969/PHESPV1180.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70447391;74184382 ERS1195348 ERX1510347 GENOMIC 228050629 2016-06-10 PHESPV1180 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439969/PHESPV1180.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439969/PHESPV1180.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439969 PHESPV1180 ERR1439991 PHESPV1202 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439991 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439991 80e1b72684394206e52b2d8fc0f110a4;ae283dad1b2a3ddc44eb52919595713c 1313 117995002 e54244d6c0c904f8b4a13cd7cc422184;9f8cf563acfb4a0aad7b63b1176f3be6 SAMEA4024260 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439991/ERR1439991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439991/ERR1439991_2.fastq.gz 1350937 WGS PHESPV1202 RANDOM 78469965;81385041 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c3caa737b32accd28f2707a6c24ed25f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439991/ERR1439991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439991/ERR1439991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439991/PHESPV1202.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439991/PHESPV1202.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439991/ERR1439991_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439991/ERR1439991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439991/PHESPV1202.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439991/PHESPV1202.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82992740;85844899 ERS1195370 ERX1510369 GENOMIC 268271649 2016-06-10 PHESPV1202 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439991/PHESPV1202.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439991/PHESPV1202.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439991 PHESPV1202 ERR1440081 PHESPV1292 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440081 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440081 e0d7509064b6c65b9d61868e1275e79f;40e289f87d9fc15bf7e9719b44bec631 1313 117791791 338e1c1780bb45202b06f0b68de8d2fd;757ea64c3ba33c5d6c8f08b22c875d80 SAMEA4024350 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440081/ERR1440081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440081/ERR1440081_2.fastq.gz 1342846 WGS PHESPV1292 RANDOM 78316164;81098124 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6c9ee758abcf9ac357b1aca7634964f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440081/ERR1440081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440081/ERR1440081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440081/PHESPV1292.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440081/PHESPV1292.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440081/ERR1440081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440081/ERR1440081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440081/PHESPV1292.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440081/PHESPV1292.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82810318;85558802 ERS1195460 ERX1510459 GENOMIC 266547502 2016-06-10 PHESPV1292 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440081/PHESPV1292.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440081/PHESPV1292.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440081 PHESPV1292 ERR1440104 PHESPV1315 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440104 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440104 1e4208e3af0bbf22babfd5f6af7eaf37;8eccd9b1d177644953114a7f76a1c9b6 1313 106900939 df079d72bb252503e5e359d7840a2df4;516097ca88db73734b83d05bb8cadaf5 SAMEA4024373 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440104/ERR1440104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440104/ERR1440104_2.fastq.gz 1184707 WGS PHESPV1315 RANDOM 70452761;74011496 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9b2e4c1f8a984ff12842e84bcc638f26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440104/ERR1440104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440104/ERR1440104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440104/PHESPV1315.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440104/PHESPV1315.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440104/ERR1440104_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440104/ERR1440104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440104/PHESPV1315.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440104/PHESPV1315.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74522665;77966884 ERS1195483 ERX1510482 GENOMIC 234786662 2016-06-10 PHESPV1315 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440104/PHESPV1315.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440104/PHESPV1315.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440104 PHESPV1315 ERR1440140 PHESPV1353 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440140 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440140 da8ed815f5684a6219a3ec9281ed4222;292b7a33e5257f0852c79f7990a34d0f 1313 132059754 57f8e85449d4ce66049c250eb09554e4;d9a90f5ddc92eaafec2e27c1c660ca8e SAMEA4024409 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440140/ERR1440140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440140/ERR1440140_2.fastq.gz 1495381 WGS PHESPV1353 RANDOM 87766510;90787310 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3436112c0b179a8e55d8bbd804488cea ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440140/ERR1440140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440140/ERR1440140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440140/PHESPV1353.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440140/PHESPV1353.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440140/ERR1440140_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440140/ERR1440140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440140/PHESPV1353.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440140/PHESPV1353.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92785988;95702252 ERS1195519 ERX1510518 GENOMIC 296837456 2016-06-10 PHESPV1353 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440140/PHESPV1353.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440140/PHESPV1353.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440140 PHESPV1353 ERR1440453 PHESPV1668 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440453 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440453 e8998de7e38a57cd0f3bbf4ca9a50e96;892e33782e5a1a91157a18801a4406c6 1313 129490934 e5b400e2ff2e5be86d3f359b5ed8cb18;e9ade39eab0e7c6d342190ad9f3b4672 SAMEA4024722 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440453/ERR1440453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440453/ERR1440453_2.fastq.gz 1426436 WGS PHESPV1668 RANDOM 92528931;94261341 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9055a6c7d60c4c141903ad47f8b8a56a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440453/ERR1440453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440453/ERR1440453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440453/PHESPV1668.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440453/PHESPV1668.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440453/ERR1440453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440453/ERR1440453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440453/PHESPV1668.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440453/PHESPV1668.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88870446;90609615 ERS1195832 ERX1510831 GENOMIC 275930372 2016-06-10 PHESPV1668 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440453/PHESPV1668.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440453/PHESPV1668.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440453 PHESPV1668 ERR1440182 PHESPV1395 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440182 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440182 ce55ccd15ad4375db4020199273435f4;8732b301d711ffc5236c832eeb8344de 1313 154013785 bed74e32abda934a1ca9bb8b9460c3c4;4b84ffcdfb9124115866cc33b903d7d8 SAMEA4024451 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440182/ERR1440182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440182/ERR1440182_2.fastq.gz 1604873 WGS PHESPV1395 RANDOM 101833893;104053373 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f14d7c873386fe7346faa5b5435fb7a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440182/ERR1440182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440182/ERR1440182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440182/PHESPV1395.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440182/PHESPV1395.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440182/ERR1440182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440182/ERR1440182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440182/PHESPV1395.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440182/PHESPV1395.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107130267;109272198 ERS1195561 ERX1510560 GENOMIC 316369010 2016-06-10 PHESPV1395 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440182/PHESPV1395.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440182/PHESPV1395.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440182 PHESPV1395 ERR1440459 PHESPV1674 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440459 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440459 53c0773c5c4040e719eda00f9c45809e;e6fe56366a9ed9733bf373d294d065f5 1313 129444803 82ba7cf7cb453d9beda975420b45bee6;4f8f02678aa65ef3c524070b5fadac1b SAMEA4024728 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440459/ERR1440459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440459/ERR1440459_2.fastq.gz 1431763 WGS PHESPV1674 RANDOM 93072321;94003652 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d0e40a12823b5b025b3da0eb6631593 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440459/ERR1440459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440459/ERR1440459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440459/PHESPV1674.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440459/PHESPV1674.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440459/ERR1440459_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440459/ERR1440459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440459/PHESPV1674.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440459/PHESPV1674.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89445420;90388249 ERS1195838 ERX1510837 GENOMIC 277870808 2016-06-10 PHESPV1674 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440459/PHESPV1674.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440459/PHESPV1674.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440459 PHESPV1674 ERR1440488 PHESPV1703 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440488 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440488 bc944d9ac779ae945fff0d241f14c03f;057be1ee0ac5c37e6652244e7c14e6bb 1313 133049975 8efa9430e0263f0e014411d0d73ba5d8;7738596c3d695962823a7302ac03dfd3 SAMEA4024757 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440488/ERR1440488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440488/ERR1440488_2.fastq.gz 1457109 WGS PHESPV1703 RANDOM 94768915;97051549 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed37905f111a47a9a2406e78aee15812 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440488/ERR1440488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440488/ERR1440488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440488/PHESPV1703.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440488/PHESPV1703.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440488/ERR1440488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440488/ERR1440488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440488/PHESPV1703.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440488/PHESPV1703.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91039256;93320273 ERS1195867 ERX1510866 GENOMIC 282698122 2016-06-10 PHESPV1703 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440488/PHESPV1703.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440488/PHESPV1703.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440488 PHESPV1703 ERR1440492 PHESPV1707 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440492 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440492 3221d2a5356e194fc5ddaf341084f435;5d39c91f08e3f8dbc8b2aec961447f30 1313 110373532 284c8152e0895d3d293a00934b8edbd1;832c60140d017c84ff1748f4489b68c1 SAMEA4024761 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440492/ERR1440492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440492/ERR1440492_2.fastq.gz 1203330 WGS PHESPV1707 RANDOM 78262407;80636450 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab0dafae1361f496fe7efb8b35d0c878 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440492/ERR1440492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440492/ERR1440492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440492/PHESPV1707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440492/PHESPV1707.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440492/ERR1440492_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440492/ERR1440492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440492/PHESPV1707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440492/PHESPV1707.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75261996;77632421 ERS1195871 ERX1510870 GENOMIC 232241551 2016-06-10 PHESPV1707 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440492/PHESPV1707.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440492/PHESPV1707.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440492 PHESPV1707 ERR1440494 PHESPV1709 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440494 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440494 068d519f00946d9902a00a816d6a2842;bbb59bbf4ae51c954398569bf3bf075b 1313 154898612 8f3ef9be26e25fc6d39811f0d6e80ed0;18a71e26d5d08ee90cc0ae3fb5fd040b SAMEA4024763 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440494/ERR1440494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440494/ERR1440494_2.fastq.gz 1720412 WGS PHESPV1709 RANDOM 112084749;113534588 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d1e2ce2221ce563f758cb732b25794c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440494/ERR1440494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440494/ERR1440494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440494/PHESPV1709.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440494/PHESPV1709.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440494/ERR1440494_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440494/ERR1440494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440494/PHESPV1709.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440494/PHESPV1709.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107638611;109087881 ERS1195873 ERX1510872 GENOMIC 337508567 2016-06-10 PHESPV1709 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440494/PHESPV1709.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440494/PHESPV1709.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440494 PHESPV1709 ERR1440509 PHESPV1724 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440509 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440509 e80ebfab0c093a269c92deffae44b43c;5cc0b9b412346bb984257a8f93f94da9 1313 119688153 d93aa97fb9519f8052700e639401e243;2b20cb6c1e05e45b11f5370d89660db6 SAMEA4024778 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440509/ERR1440509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440509/ERR1440509_2.fastq.gz 1302076 WGS PHESPV1724 RANDOM 84692929;87511630 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fd195c94e34b30948922ba2cee5e8da6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440509/ERR1440509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440509/ERR1440509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440509/PHESPV1724.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440509/PHESPV1724.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440509/ERR1440509_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440509/ERR1440509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440509/PHESPV1724.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440509/PHESPV1724.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81452263;84268968 ERS1195888 ERX1510887 GENOMIC 251967247 2016-06-10 PHESPV1724 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440509/PHESPV1724.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440509/PHESPV1724.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440509 PHESPV1724 ERR1440514 PHESPV1729 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440514 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440514 de069b2509a3e9d2a8473492cac71d3b;869e6c6fdba3e38c97afe68bb0cbadcd 1313 130864723 a5d881775facc902f84e798396a86501;23c8dea768bd363e9c07fa2a9bc7f016 SAMEA4024783 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440514/ERR1440514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440514/ERR1440514_2.fastq.gz 1435030 WGS PHESPV1729 RANDOM 93303084;95487062 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ece0f8d6976150389e428ebef1b0f0ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440514/ERR1440514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440514/ERR1440514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440514/PHESPV1729.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440514/PHESPV1729.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440514/ERR1440514_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440514/ERR1440514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440514/PHESPV1729.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440514/PHESPV1729.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89630506;91819112 ERS1195893 ERX1510892 GENOMIC 278567935 2016-06-10 PHESPV1729 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440514/PHESPV1729.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440514/PHESPV1729.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440514 PHESPV1729 ERR1440519 PHESPV1734 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440519 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440519 c7bf14978a9d301869b33cc6457f45ba;63bf1bf350ccb7e9b54827a2dfc00cfd 1313 197906501 3c56b71ee8790f87e654b99f36c67e27;2859222f2f803d32d13d34ea6ce88f75 SAMEA4024788 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440519/ERR1440519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440519/ERR1440519_2.fastq.gz 2196804 WGS PHESPV1734 RANDOM 142424391;143321444 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d00cfb39b195e03e62d0ba4352d44fc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440519/ERR1440519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440519/ERR1440519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440519/PHESPV1734.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440519/PHESPV1734.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440519/ERR1440519_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440519/ERR1440519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440519/PHESPV1734.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440519/PHESPV1734.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 136817131;137719529 ERS1195898 ERX1510897 GENOMIC 427691602 2016-06-10 PHESPV1734 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440519/PHESPV1734.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440519/PHESPV1734.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440519 PHESPV1734 ERR1439037 PHESPV0248 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439037 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439037 5c517beaf5d81c15399d9d4902903124;eb4958a19f72b6bff0620cc477b1f986 1313 112982844 2a4661f2f3e2beeaf89a6ca0fe35021c;1236f67d0bdccfb46b1b2076d1eff583 SAMEA4023306 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439037/ERR1439037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439037/ERR1439037_2.fastq.gz 953760 WGS PHESPV0248 RANDOM 68544783;72220481 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d66f58c3ecb8ae7d3103c6cae164b93 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439037/ERR1439037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439037/ERR1439037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439037/PHESPV0248.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439037/PHESPV0248.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439037/ERR1439037_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439037/ERR1439037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439037/PHESPV0248.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439037/PHESPV0248.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71856244;75532493 ERS1194416 ERX1509415 GENOMIC 186964089 2016-06-10 PHESPV0248 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439037/PHESPV0248.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439037/PHESPV0248.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439037 PHESPV0248 ERR1440573 PHESPV1788 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440573 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440573 623f29615fb59c9139090a670469ff27;41f54180f238c60250faea567c194d9a 1313 161035454 89a25103614bb558aeeac3153193cdd7;1e20b9525adb65e59fa6e83d076fc169 SAMEA4024842 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440573/ERR1440573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440573/ERR1440573_2.fastq.gz 1847550 WGS PHESPV1788 RANDOM 114681782;121467891 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5281b9805ad6b610ce114ffe4c868981 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440573/ERR1440573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440573/ERR1440573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440573/PHESPV1788.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440573/PHESPV1788.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440573/ERR1440573_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440573/ERR1440573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440573/PHESPV1788.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440573/PHESPV1788.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109979892;116676701 ERS1195952 ERX1510951 GENOMIC 364663867 2016-06-10 PHESPV1788 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440573/PHESPV1788.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440573/PHESPV1788.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440573 PHESPV1788 ERR1438902 PHESPV0112 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438902 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438902 60ece654ba69b70bc982c18db203f185;d1ce749830d8aaaa71713f380b883de4 1313 166738363 9df5305ee290067e803990c4561e5201;81e94352abbd7c322b4348dc5642528c SAMEA4023171 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438902/ERR1438902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438902/ERR1438902_2.fastq.gz 1926040 WGS PHESPV0112 RANDOM 112562692;113815243 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6cbe169ce899eca68f82a63e738228df ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438902/ERR1438902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438902/ERR1438902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438902/PHESPV0112.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438902/PHESPV0112.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438902/ERR1438902_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438902/ERR1438902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438902/PHESPV0112.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438902/PHESPV0112.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118759723;120004308 ERS1194281 ERX1509280 GENOMIC 382423856 2016-06-10 PHESPV0112 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438902/PHESPV0112.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438902/PHESPV0112.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438902 PHESPV0112 ERR1439812 PHESPV1023 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439812 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439812 6a9cc0eb400d675f1c0e2d14bfbf980d;ce61f75b667421f5c3bc7d06871e1f9c 1313 181976261 4a0c17589e547d817d7c10c56bfa1012;5d1f113646be19a7e6274b2c83c19b80 SAMEA4024081 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439812/ERR1439812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439812/ERR1439812_2.fastq.gz 2041024 WGS PHESPV1023 RANDOM 130887227;132382020 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69db0bae55f8cee57a2ef9f65504b0ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439812/ERR1439812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439812/ERR1439812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439812/PHESPV1023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439812/PHESPV1023.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439812/ERR1439812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439812/ERR1439812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439812/PHESPV1023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439812/PHESPV1023.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125580508;127092578 ERS1195191 ERX1510190 GENOMIC 386896233 2016-06-10 PHESPV1023 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439812/PHESPV1023.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439812/PHESPV1023.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439812 PHESPV1023 ERR1439820 PHESPV1031 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439820 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439820 98ebbac41b7735c190e8362f97a19c5f;5363cf57cee4e8c9d8ef9943d3cf8371 1313 147402784 f915b4857ed0933e724da1564ea8226f;c52c9eac51f555d3fcdc1e8ea0b82f52 SAMEA4024089 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439820/ERR1439820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439820/ERR1439820_2.fastq.gz 1666178 WGS PHESPV1031 RANDOM 107296526;106877331 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c3934b119b67ba297931fe7d6771e790 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439820/ERR1439820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439820/ERR1439820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439820/PHESPV1031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439820/PHESPV1031.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439820/ERR1439820_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439820/ERR1439820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439820/PHESPV1031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439820/PHESPV1031.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102896663;102503314 ERS1195199 ERX1510198 GENOMIC 317256123 2016-06-10 PHESPV1031 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439820/PHESPV1031.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439820/PHESPV1031.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439820 PHESPV1031 ERR1439819 PHESPV1030 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439819 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439819 fe2e11a2b1ff5555703e48b123214410;5f36952bbbe852f4ea1d7f987c5a16c2 1313 118961723 a1908d382506a3b2157e40e891d177b9;5b34650123aad69b02e740fb6a6adfda SAMEA4024088 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439819/ERR1439819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439819/ERR1439819_2.fastq.gz 1308569 WGS PHESPV1030 RANDOM 86048450;86284746 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8a2aef6d250702f1c5bfd6208c6e35be ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439819/ERR1439819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439819/ERR1439819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439819/PHESPV1030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439819/PHESPV1030.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439819/ERR1439819_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439819/ERR1439819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439819/PHESPV1030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439819/PHESPV1030.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82749274;82998058 ERS1195198 ERX1510197 GENOMIC 254828070 2016-06-10 PHESPV1030 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439819/PHESPV1030.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439819/PHESPV1030.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439819 PHESPV1030 ERR1439818 PHESPV1029 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439818 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439818 d5170df8b9e0f60dce380430b496ee12;2f26628323a34a16f99fb12cd2f0297c 1313 140817401 bc18c182b51f0528e56b348b467677f2;0daa4eb84eaf1ba2f411f72a71503dee SAMEA4024087 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439818/ERR1439818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439818/ERR1439818_2.fastq.gz 1565974 WGS PHESPV1029 RANDOM 102559604;102042112 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fafc7b2d6508302fdda5a462b087feb5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439818/ERR1439818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439818/ERR1439818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439818/PHESPV1029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439818/PHESPV1029.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439818/ERR1439818_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439818/ERR1439818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439818/PHESPV1029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439818/PHESPV1029.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98482813;97992064 ERS1195197 ERX1510196 GENOMIC 304324567 2016-06-10 PHESPV1029 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439818/PHESPV1029.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439818/PHESPV1029.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439818 PHESPV1029 ERR1439822 PHESPV1033 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439822 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439822 4a78abbd737966e375972e112f83b2dc;922bc2220893768c002e35cf0822738f 1313 146446328 e36ef50b0bc6a50e6231f9ddb2f6a5ae;884dd114e544be859ba17a25c16affee SAMEA4024091 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439822/ERR1439822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439822/ERR1439822_2.fastq.gz 1640276 WGS PHESPV1033 RANDOM 106453773;106132872 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17577d68e0036171aa52f68cbfe9fdc1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439822/ERR1439822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439822/ERR1439822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439822/PHESPV1033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439822/PHESPV1033.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439822/ERR1439822_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439822/ERR1439822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439822/PHESPV1033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439822/PHESPV1033.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102166456;101870653 ERS1195201 ERX1510200 GENOMIC 314860557 2016-06-10 PHESPV1033 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439822/PHESPV1033.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439822/PHESPV1033.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439822 PHESPV1033 ERR1439849 PHESPV1060 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439849 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439849 547f1493a2881fde80b5ea5f96085ecc;ef702c6e6d82c59d22ebc661060bb487 1313 188130162 813ce237a04ab62726dec1578ab4c9ee;c6b3ef419b207c8e34293509382a9b57 SAMEA4024118 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439849/ERR1439849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439849/ERR1439849_2.fastq.gz 2004512 WGS PHESPV1060 RANDOM 134732916;136045342 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0ae9105c0b7328c2aa80ce092e782039 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439849/ERR1439849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439849/ERR1439849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439849/PHESPV1060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439849/PHESPV1060.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439849/ERR1439849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439849/ERR1439849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439849/PHESPV1060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439849/PHESPV1060.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129495239;130804441 ERS1195228 ERX1510227 GENOMIC 389877854 2016-06-10 PHESPV1060 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439849/PHESPV1060.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439849/PHESPV1060.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439849 PHESPV1060 ERR1439867 PHESPV1078 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439867 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439867 14f454022d928d3388097f998acbafa8;304b3ff419f251da56e339d0faa7fef4 1313 116992164 17f078aeff45291a60c5ef84258b4e79;94226ca052716651aa284d57224de252 SAMEA4024136 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439867/ERR1439867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439867/ERR1439867_2.fastq.gz 1269489 WGS PHESPV1078 RANDOM 83591176;84194351 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6c8586def2372a394e5fd95238e3c99b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439867/ERR1439867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439867/ERR1439867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439867/PHESPV1078.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439867/PHESPV1078.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439867/ERR1439867_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439867/ERR1439867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439867/PHESPV1078.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439867/PHESPV1078.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80359997;80982744 ERS1195246 ERX1510245 GENOMIC 237461790 2016-06-10 PHESPV1078 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439867/PHESPV1078.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439867/PHESPV1078.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439867 PHESPV1078 ERR1439854 PHESPV1065 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439854 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439854 c2f47b4d964e985e0207f3b45dd4829e;e6ec000ac301eeab10454c77c29502d7 1313 137547695 1eafca0faee8f091c59a1cd58d0d4b80;07ac9576cecfc1a760ea1fef67742f58 SAMEA4024123 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439854/ERR1439854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439854/ERR1439854_2.fastq.gz 1516423 WGS PHESPV1065 RANDOM 98249349;100515298 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6da11514c8da325eb36d6476f07bf46a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439854/ERR1439854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439854/ERR1439854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439854/PHESPV1065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439854/PHESPV1065.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439854/ERR1439854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439854/ERR1439854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439854/PHESPV1065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439854/PHESPV1065.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94298633;96565255 ERS1195233 ERX1510232 GENOMIC 290239544 2016-06-10 PHESPV1065 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439854/PHESPV1065.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439854/PHESPV1065.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439854 PHESPV1065 ERR1439876 PHESPV1087 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439876 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439876 2ea81fc2ad7b8c7c8888a541a3d8be5b;7e05c9b29f9b40f60595573c0bcf4003 1313 129826370 d2102a581b657be0b98228ce6cad1bb8;63c5121685f8017adfc2ff86326520a8 SAMEA4024145 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439876/ERR1439876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439876/ERR1439876_2.fastq.gz 1389537 WGS PHESPV1087 RANDOM 91829219;94065544 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 920acb6111ef6fbb2dc1c6453f2ef378 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439876/ERR1439876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439876/ERR1439876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439876/PHESPV1087.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439876/PHESPV1087.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439876/ERR1439876_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439876/ERR1439876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439876/PHESPV1087.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439876/PHESPV1087.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88243368;90497928 ERS1195255 ERX1510254 GENOMIC 261041239 2016-06-10 PHESPV1087 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439876/PHESPV1087.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439876/PHESPV1087.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439876 PHESPV1087 ERR1439869 PHESPV1080 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439869 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439869 5cb18c0cbfcba998739a0b483fd825ff;7bc2d1593e451ee0b2d17c8314c83e61 1313 149370816 2be126a5a40e1bdae639012efe57ad61;d4a157e126981cec04f08dbdd4ace7f7 SAMEA4024138 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439869/ERR1439869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439869/ERR1439869_2.fastq.gz 1651882 WGS PHESPV1080 RANDOM 106427591;109301251 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8e6db5ee432cdfa707ab1344a7bd336f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439869/ERR1439869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439869/ERR1439869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439869/PHESPV1080.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439869/PHESPV1080.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439869/ERR1439869_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439869/ERR1439869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439869/PHESPV1080.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439869/PHESPV1080.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102071543;104941692 ERS1195248 ERX1510247 GENOMIC 314011099 2016-06-10 PHESPV1080 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439869/PHESPV1080.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439869/PHESPV1080.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439869 PHESPV1080 ERR1439879 PHESPV1090 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439879 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439879 2f6e0e99bf9fb64290c9b977459802a6;c31c3643a328eda93a666067a2a9181e 1313 110420234 73d0db53bddff5f93b12fd4c9d43cdc9;ac3748bc6ff6a8d363a693468d4c6859 SAMEA4024148 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439879/ERR1439879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439879/ERR1439879_2.fastq.gz 1192345 WGS PHESPV1090 RANDOM 78791119;79651690 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6230ae6339e09333184378d830fb15f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439879/ERR1439879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439879/ERR1439879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439879/PHESPV1090.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439879/PHESPV1090.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439879/ERR1439879_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439879/ERR1439879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439879/PHESPV1090.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439879/PHESPV1090.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75773383;76652640 ERS1195258 ERX1510257 GENOMIC 224117465 2016-06-10 PHESPV1090 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439879/PHESPV1090.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439879/PHESPV1090.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439879 PHESPV1090 ERR1439883 PHESPV1094 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439883 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439883 4a4a938a5a146183b1b0b4e03bef98f0;60aba7a444466631ed134e01a2f3f3f6 1313 139504111 640127a66ac03a25cd0d682fb6f83165;68ddff5809da9ca62da60c59b7362ccf SAMEA4024152 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439883/ERR1439883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439883/ERR1439883_2.fastq.gz 1514664 WGS PHESPV1094 RANDOM 99552859;100712581 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cbae40c301be37591bbbfe98455d89cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439883/ERR1439883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439883/ERR1439883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439883/PHESPV1094.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439883/PHESPV1094.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439883/ERR1439883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439883/ERR1439883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439883/PHESPV1094.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439883/PHESPV1094.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95606990;96792120 ERS1195262 ERX1510261 GENOMIC 283499329 2016-06-10 PHESPV1094 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439883/PHESPV1094.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439883/PHESPV1094.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439883 PHESPV1094 ERR1440029 PHESPV1240 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440029 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440029 8b18b8cf80d1e5432a1f85ae2fc179c2;bbb0a90c5821287bb6670fd8eae0e108 1313 131347729 c0ca3439d05b47b44805151e6d714862;e56ef3587d2e2380f7b5b44570596cf5 SAMEA4024298 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440029/ERR1440029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440029/ERR1440029_2.fastq.gz 1434681 WGS PHESPV1240 RANDOM 94418706;94582296 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e3dd7823d488090d0423749ad72ea390 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440029/ERR1440029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440029/ERR1440029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440029/PHESPV1240.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440029/PHESPV1240.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440029/ERR1440029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440029/ERR1440029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440029/PHESPV1240.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440029/PHESPV1240.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90710955;90903241 ERS1195408 ERX1510407 GENOMIC 270368264 2016-06-10 PHESPV1240 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440029/PHESPV1240.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440029/PHESPV1240.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440029 PHESPV1240 ERR1439884 PHESPV1095 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439884 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439884 da0da5533310194d088f2fb7335a2c50;ec423bd9325cab08319ffaabdf469094 1313 186554644 0aeff3b6a20b6b593bed26ae077f4252;a808b7552c0ce17743f5add90bec2cd6 SAMEA4024153 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439884/ERR1439884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439884/ERR1439884_2.fastq.gz 2052161 WGS PHESPV1095 RANDOM 134226967;133870994 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0ee4678249cbcfaa8f5332b92f5414a0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439884/ERR1439884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439884/ERR1439884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439884/PHESPV1095.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439884/PHESPV1095.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439884/ERR1439884_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439884/ERR1439884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439884/PHESPV1095.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439884/PHESPV1095.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128884061;128560643 ERS1195263 ERX1510262 GENOMIC 384276998 2016-06-10 PHESPV1095 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439884/PHESPV1095.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439884/PHESPV1095.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439884 PHESPV1095 ERR1440109 PHESPV1320 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440109 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440109 56ce2cd8fbb7d34770d68aa7f43a2d6f;b1d13ee761bc7aebd702edb983a2a2ec 1313 147703859 77e17837796647e1d2a95def5f78dfa1;07759821bed330a686d2987a3e7a0957 SAMEA4024378 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440109/ERR1440109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440109/ERR1440109_2.fastq.gz 1659473 WGS PHESPV1320 RANDOM 97574736;102195030 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f80c827c50838a3cd26660b9122ea840 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440109/ERR1440109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440109/ERR1440109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440109/PHESPV1320.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440109/PHESPV1320.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440109/ERR1440109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440109/ERR1440109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440109/PHESPV1320.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440109/PHESPV1320.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103033618;107528893 ERS1195488 ERX1510487 GENOMIC 329178388 2016-06-10 PHESPV1320 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440109/PHESPV1320.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440109/PHESPV1320.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440109 PHESPV1320 ERR1440207 PHESPV1421 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440207 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440207 c4867fe7f3c21a732d8f423b000fb62b;1f8e76fc0a6c79e048bd43bc0e6bb856 1313 128047214 cc7d2c7b7f6b6638add94bc9886b5417;c150684a1f8ff8c4bb3dcdd2c89355ae SAMEA4024476 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440207/ERR1440207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440207/ERR1440207_2.fastq.gz 1378430 WGS PHESPV1421 RANDOM 90985845;92442798 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ade2b491aeac2b717ef5ef140a50073f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440207/ERR1440207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440207/ERR1440207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440207/PHESPV1421.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440207/PHESPV1421.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440207/ERR1440207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440207/ERR1440207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440207/PHESPV1421.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440207/PHESPV1421.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87446063;88922615 ERS1195586 ERX1510585 GENOMIC 258578121 2016-06-10 PHESPV1421 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440207/PHESPV1421.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440207/PHESPV1421.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440207 PHESPV1421 ERR1440208 PHESPV1422 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440208 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440208 cb1185dfdb2423d0a5896c64bd241cfb;3ba1070cd3382a677849efbf53fe0169 1313 71748017 901f0e4002b2cf3d544f7f761b6ace43;222bd6266564c5d53a246057da406be6 SAMEA4024477 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440208/ERR1440208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440208/ERR1440208_2.fastq.gz 805214 WGS PHESPV1422 RANDOM 47512114;49711056 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline add7095e2be52b7f5427baeea8b7a879 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440208/ERR1440208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440208/ERR1440208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440208/PHESPV1422.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440208/PHESPV1422.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440208/ERR1440208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440208/ERR1440208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440208/PHESPV1422.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440208/PHESPV1422.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50398804;52562878 ERS1195587 ERX1510586 GENOMIC 159561675 2016-06-10 PHESPV1422 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440208/PHESPV1422.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440208/PHESPV1422.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440208 PHESPV1422 ERR1440217 PHESPV1431 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440217 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440217 1b86bf907464b0a075eb004ea48174aa;59e5d2019284d2a812e964e5141abc58 1313 125294463 e54ba4ddf0ca5b86421f212cc04249de;0d5c0a75bce3a69214ed741c2b144c0a SAMEA4024486 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440217/ERR1440217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440217/ERR1440217_2.fastq.gz 1358099 WGS PHESPV1431 RANDOM 89911901;89934093 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a458744b95fa2d7e0ab8c3e7b2835363 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440217/ERR1440217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440217/ERR1440217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440217/PHESPV1431.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440217/PHESPV1431.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440217/ERR1440217_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440217/ERR1440217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440217/PHESPV1431.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440217/PHESPV1431.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86443350;86488809 ERS1195596 ERX1510595 GENOMIC 255652363 2016-06-10 PHESPV1431 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440217/PHESPV1431.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440217/PHESPV1431.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440217 PHESPV1431 ERR1440282 PHESPV1497 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440282 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440282 e1ce6201726a78a30d5afbe8a3a1e4cb;006191794deaebcea3e4d16f3ba86477 1313 148551767 f08e8c4a7f15f9d06f3990b082e088fe;0a4e02b5ed4fba059381e7bd1745cab3 SAMEA4024551 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440282/ERR1440282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440282/ERR1440282_2.fastq.gz 1624777 WGS PHESPV1497 RANDOM 107197309;106573743 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ebf251803167a3cbc42362ba6e1db3d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440282/ERR1440282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440282/ERR1440282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440282/PHESPV1497.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440282/PHESPV1497.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440282/ERR1440282_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440282/ERR1440282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440282/PHESPV1497.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440282/PHESPV1497.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102953098;102365458 ERS1195661 ERX1510660 GENOMIC 305198927 2016-06-10 PHESPV1497 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440282/PHESPV1497.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440282/PHESPV1497.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440282 PHESPV1497 ERR1440225 PHESPV1439 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440225 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440225 ad1a9e27a9f4f9a875f85e67c6c825bf;999c1bb96697f3d33efc36629f8d605f 1313 157128416 5689d8b35ea2d08ebfcca1088fe885c9;a4fa6c53dc00e15c44082aa16363f911 SAMEA4024494 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440225/ERR1440225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440225/ERR1440225_2.fastq.gz 1844743 WGS PHESPV1439 RANDOM 103152849;110913957 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96712bed5b05bf086feea8ba074166dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440225/ERR1440225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440225/ERR1440225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440225/PHESPV1439.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440225/PHESPV1439.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440225/ERR1440225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440225/ERR1440225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440225/PHESPV1439.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440225/PHESPV1439.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109076412;116740738 ERS1195604 ERX1510603 GENOMIC 365727285 2016-06-10 PHESPV1439 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440225/PHESPV1439.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440225/PHESPV1439.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440225 PHESPV1439 ERR1440317 PHESPV1532 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440317 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440317 64d892a6430b3ef6edf570397e03466a;af1b4b77a907ec501b382fd2f400d13a 1313 145546699 245a475dd89182ecaa54d2ee39393324;b2401729d6874acf30596e3b3557cab7 SAMEA4024586 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440317/ERR1440317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440317/ERR1440317_2.fastq.gz 1725297 WGS PHESPV1532 RANDOM 106014540;108899556 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd330a064e71e067c828ca9a1dd77a6d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440317/ERR1440317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440317/ERR1440317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440317/PHESPV1532.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440317/PHESPV1532.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440317/ERR1440317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440317/ERR1440317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440317/PHESPV1532.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440317/PHESPV1532.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101567676;104411113 ERS1195696 ERX1510695 GENOMIC 338290841 2016-06-10 PHESPV1532 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440317/PHESPV1532.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440317/PHESPV1532.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440317 PHESPV1532 ERR1440325 PHESPV1540 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440325 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440325 2d0f8ac48b6f43a18b07e4ac797687e8;b1d10b7d1a8f1ac36a5cddabc14e8141 1313 125710264 7c5278d8b171e18c336e9035a5ae4738;1c78e0595715e49b7f13c555fd60f462 SAMEA4024594 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440325/ERR1440325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440325/ERR1440325_2.fastq.gz 1471782 WGS PHESPV1540 RANDOM 91314701;94076723 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 13de6fe3fd30ae5f3adbe3f4054aa3ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440325/ERR1440325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440325/ERR1440325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440325/PHESPV1540.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440325/PHESPV1540.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440325/ERR1440325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440325/ERR1440325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440325/PHESPV1540.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440325/PHESPV1540.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87662364;90386111 ERS1195704 ERX1510703 GENOMIC 290573923 2016-06-10 PHESPV1540 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440325/PHESPV1540.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440325/PHESPV1540.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440325 PHESPV1540 ERR1440326 PHESPV1541 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440326 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440326 2b11dae873e1f0ba699a640813bad2bd;565e64cd90b3c3ff469566d39f79e448 1313 139092404 798d5ca5542b5e8833f2cf6701e43c82;8406af6d51162cfe9f332bf678e922d9 SAMEA4024595 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440326/ERR1440326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440326/ERR1440326_2.fastq.gz 1548836 WGS PHESPV1541 RANDOM 91402406;93751840 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ce440213b4992a9cc3a781818ec485b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440326/ERR1440326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440326/ERR1440326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440326/PHESPV1541.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440326/PHESPV1541.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440326/ERR1440326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440326/ERR1440326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440326/PHESPV1541.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440326/PHESPV1541.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96462617;98770049 ERS1195705 ERX1510704 GENOMIC 306375041 2016-06-10 PHESPV1541 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440326/PHESPV1541.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440326/PHESPV1541.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440326 PHESPV1541 ERR1440328 PHESPV1543 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440328 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440328 50268df3456340df61f3cb9839a7d554;a9d29d9f30b5b489c956f360c38e1520 1313 187390129 bb964a375c43595a64b5c2489bbb638a;ea18e0620bb9c4e8bf77fa09278e30ef SAMEA4024597 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440328/ERR1440328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440328/ERR1440328_2.fastq.gz 2186345 WGS PHESPV1543 RANDOM 135094850;140139333 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cd426da0e3819085046c8988b786e983 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440328/ERR1440328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440328/ERR1440328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440328/PHESPV1543.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440328/PHESPV1543.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440328/ERR1440328_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440328/ERR1440328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440328/PHESPV1543.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440328/PHESPV1543.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129560950;134569945 ERS1195707 ERX1510706 GENOMIC 430384478 2016-06-10 PHESPV1543 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440328/PHESPV1543.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440328/PHESPV1543.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440328 PHESPV1543 ERR1440330 PHESPV1545 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440330 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440330 608b8103571257ee7a93acd1f4b04968;79989e532b92add483fed6d75aa011ff 1313 132340770 0bee40011c400a237c9016f1c2acb782;f4bde64937f3e0499cf4a819439ae68a SAMEA4024599 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440330/ERR1440330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440330/ERR1440330_2.fastq.gz 1544918 WGS PHESPV1545 RANDOM 95468012;99081314 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 720e8346f8a061671a5e9ec3dc7987b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440330/ERR1440330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440330/ERR1440330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440330/PHESPV1545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440330/PHESPV1545.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440330/ERR1440330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440330/ERR1440330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440330/PHESPV1545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440330/PHESPV1545.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91587879;95149863 ERS1195709 ERX1510708 GENOMIC 302463994 2016-06-10 PHESPV1545 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440330/PHESPV1545.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440330/PHESPV1545.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440330 PHESPV1545 ERR1440337 PHESPV1552 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440337 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440337 dd88250ffe955726e33229c0d3a7d1f6;e14085be15419912208cdd362d343d05 1313 213412025 9f5123606fca97a23ff0433546f4e658;ea059011bec01ff935187c8dd132a147 SAMEA4024606 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440337/ERR1440337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440337/ERR1440337_2.fastq.gz 2386718 WGS PHESPV1552 RANDOM 141051541;145949942 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a44e6740731190991a7e7dd384b6d199 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440337/ERR1440337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440337/ERR1440337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440337/PHESPV1552.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440337/PHESPV1552.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440337/ERR1440337_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440337/ERR1440337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440337/PHESPV1552.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440337/PHESPV1552.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 148437152;153289650 ERS1195716 ERX1510715 GENOMIC 472310853 2016-06-10 PHESPV1552 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440337/PHESPV1552.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440337/PHESPV1552.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440337 PHESPV1552 ERR1440346 PHESPV1561 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440346 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440346 508497d83836d557cd7e614d7c570f9a;e6029adbc0bfa9d8f07878e35860eba3 1313 76214228 e6fb26c029a03fe9b07819c80763e834;83aa53c5680c2dc0c5e35a549c0acea8 SAMEA4024615 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440346/ERR1440346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440346/ERR1440346_2.fastq.gz 873229 WGS PHESPV1561 RANDOM 51195172;52261830 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63261f8d35d4f362b683aa8eb5560ef8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440346/ERR1440346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440346/ERR1440346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440346/PHESPV1561.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440346/PHESPV1561.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440346/ERR1440346_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440346/ERR1440346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440346/PHESPV1561.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440346/PHESPV1561.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54268373;55327378 ERS1195725 ERX1510724 GENOMIC 173190789 2016-06-10 PHESPV1561 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440346/PHESPV1561.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440346/PHESPV1561.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440346 PHESPV1561 ERR1440356 PHESPV1571 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440356 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440356 54efeb8203aab2e18c0a7245a6f725e1;874b863d2fbacb7a774842fa945c4230 1313 124323827 ba246867b102d055c5a5a0f9b90f0c27;df2fa84fe94f41f3daf8934d2054fb48 SAMEA4024625 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440356/ERR1440356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440356/ERR1440356_2.fastq.gz 1343088 WGS PHESPV1571 RANDOM 82468767;84051180 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5cf9ec33df2e56b97bf1848ca59366ae ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440356/ERR1440356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440356/ERR1440356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440356/PHESPV1571.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440356/PHESPV1571.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440356/ERR1440356_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440356/ERR1440356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440356/PHESPV1571.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440356/PHESPV1571.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86918257;88462343 ERS1195735 ERX1510734 GENOMIC 265180012 2016-06-10 PHESPV1571 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440356/PHESPV1571.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440356/PHESPV1571.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440356 PHESPV1571 ERR1440362 PHESPV1577 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440362 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440362 633ccbe0a5b42d885c746218d7670f0a;7915b0de802ff3306f8df3f094f2ea56 1313 149495697 d150b54001c69d7fdfa8bfddea49db35;cdb3df01dc480e8245b3f044c0eeab26 SAMEA4024631 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440362/ERR1440362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440362/ERR1440362_2.fastq.gz 1763580 WGS PHESPV1577 RANDOM 108601412;111867877 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d23f89029ec41e476eec3d00b61acae1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440362/ERR1440362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440362/ERR1440362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440362/PHESPV1577.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440362/PHESPV1577.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440362/ERR1440362_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440362/ERR1440362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440362/PHESPV1577.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440362/PHESPV1577.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104094189;107317490 ERS1195741 ERX1510740 GENOMIC 346573593 2016-06-10 PHESPV1577 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440362/PHESPV1577.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440362/PHESPV1577.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440362 PHESPV1577 ERR1440381 PHESPV1596 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440381 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440381 39c534f4619882d308daf9eabf144146;d0b68ef83d98185f3879b0e45a621f35 1313 159434378 af57aed09561c4e4c595cded8adea79d;44731b647a467ed38c11a4814104c639 SAMEA4024650 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440381/ERR1440381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440381/ERR1440381_2.fastq.gz 1855140 WGS PHESPV1596 RANDOM 113088396;120590013 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 95d385ad302487ed6e68662cb612708c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440381/ERR1440381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440381/ERR1440381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440381/PHESPV1596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440381/PHESPV1596.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440381/ERR1440381_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440381/ERR1440381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440381/PHESPV1596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440381/PHESPV1596.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108346179;115768984 ERS1195760 ERX1510759 GENOMIC 361632177 2016-06-10 PHESPV1596 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440381/PHESPV1596.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440381/PHESPV1596.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440381 PHESPV1596 ERR1440387 PHESPV1602 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440387 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440387 fccbef35c30104ca2c340bac87e1c7f4;8c9f1b39f7de617ce7024f342742c052 1313 147609777 3332ba1b45c2d8b328c500dacedea25a;4a1ed4719247fadb3a54ebcac12f9d1e SAMEA4024656 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440387/ERR1440387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440387/ERR1440387_2.fastq.gz 1631765 WGS PHESPV1602 RANDOM 106385656;108244244 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 544c6955722b1e4935258f573e2e3311 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440387/ERR1440387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440387/ERR1440387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440387/PHESPV1602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440387/PHESPV1602.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440387/ERR1440387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440387/ERR1440387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440387/PHESPV1602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440387/PHESPV1602.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102199432;104058638 ERS1195766 ERX1510765 GENOMIC 318761805 2016-06-10 PHESPV1602 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440387/PHESPV1602.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440387/PHESPV1602.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440387 PHESPV1602 ERR1440416 PHESPV1631 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440416 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440416 83adf1d23a329c29c9f272ee88572872;1cefc6bc43d3db1ee61728c948a035ba 1313 144422241 9de01d263332c77d759f5518adb313cb;b93e54dcbd25489b313329f33f5fb8ab SAMEA4024685 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440416/ERR1440416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440416/ERR1440416_2.fastq.gz 1582899 WGS PHESPV1631 RANDOM 103020741;106482061 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42c67c4683d53cb939e2a63550c5e5de ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440416/ERR1440416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440416/ERR1440416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440416/PHESPV1631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440416/PHESPV1631.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440416/ERR1440416_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440416/ERR1440416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440416/PHESPV1631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440416/PHESPV1631.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98978732;102417639 ERS1195795 ERX1510794 GENOMIC 308735099 2016-06-10 PHESPV1631 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440416/PHESPV1631.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440416/PHESPV1631.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440416 PHESPV1631 ERR1440430 PHESPV1645 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440430 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440430 a0f49d00781bd9a9c6f5de24514fd5c9;90e2839e575129678715faa367236f09 1313 146712337 c6734fbd3dfaebe445abdee44dfc5015;7e0d13b2bc59d0ab0a9e1284900e46b0 SAMEA4024699 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440430/ERR1440430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440430/ERR1440430_2.fastq.gz 1608719 WGS PHESPV1645 RANDOM 104785708;108039117 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ddcf1ccee551687b4547001775f181dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440430/ERR1440430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440430/ERR1440430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440430/PHESPV1645.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440430/PHESPV1645.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440430/ERR1440430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440430/ERR1440430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440430/PHESPV1645.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440430/PHESPV1645.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100667996;103901686 ERS1195809 ERX1510808 GENOMIC 314772921 2016-06-10 PHESPV1645 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440430/PHESPV1645.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440430/PHESPV1645.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440430 PHESPV1645 ERR1440436 PHESPV1651 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440436 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440436 8efb0a89e19c685bf57737d55cdb36c5;e3844a5fb75209995bf20cdc5f22c992 1313 146828413 fc63e66f2c8a706061473629cf27258f;34646c8699fae20f693edc5e4571d228 SAMEA4024705 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440436/ERR1440436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440436/ERR1440436_2.fastq.gz 1599046 WGS PHESPV1651 RANDOM 103562998;108502126 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 87db528881a74fdf486fbc31ce5f3d62 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440436/ERR1440436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440436/ERR1440436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440436/PHESPV1651.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440436/PHESPV1651.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440436/ERR1440436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440436/ERR1440436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440436/PHESPV1651.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440436/PHESPV1651.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99455250;104358920 ERS1195815 ERX1510814 GENOMIC 307820386 2016-06-10 PHESPV1651 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440436/PHESPV1651.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440436/PHESPV1651.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440436 PHESPV1651 ERR1440478 PHESPV1693 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440478 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440478 83cb775d9c64786a365cfac55935ab3b;75232f8c06f08400e6f9e73748e378aa 1313 151406407 6f1e563054ac0eaf2887d125794ccf08;34fee840a70a336e1308691285ac39cd SAMEA4024747 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440478/ERR1440478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440478/ERR1440478_2.fastq.gz 1676920 WGS PHESPV1693 RANDOM 109135285;110047856 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 40c5e1ca264627c1043d5246c333b10e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440478/ERR1440478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440478/ERR1440478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440478/PHESPV1693.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440478/PHESPV1693.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440478/ERR1440478_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440478/ERR1440478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440478/PHESPV1693.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440478/PHESPV1693.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104767985;105697077 ERS1195857 ERX1510856 GENOMIC 326349788 2016-06-10 PHESPV1693 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440478/PHESPV1693.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440478/PHESPV1693.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440478 PHESPV1693 ERR1440489 PHESPV1704 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440489 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440489 242cec794d9a74b6e6159c9eaf19406b;dfad1b75aa6f0170f4cbec7885099640 1313 128410112 9c5b1843974dfeec85510556d58d2b40;c0230d851a0dda2cd5a171bccb9662b4 SAMEA4024758 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440489/ERR1440489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440489/ERR1440489_2.fastq.gz 1436684 WGS PHESPV1704 RANDOM 92768274;92976182 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f076518025c2e476c97653356f8af3d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440489/ERR1440489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440489/ERR1440489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440489/PHESPV1704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440489/PHESPV1704.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440489/ERR1440489_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440489/ERR1440489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440489/PHESPV1704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440489/PHESPV1704.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89073943;89296612 ERS1195868 ERX1510867 GENOMIC 276431018 2016-06-10 PHESPV1704 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440489/PHESPV1704.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440489/PHESPV1704.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440489 PHESPV1704 ERR1440490 PHESPV1705 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440490 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440490 9aad9dc68cc6fc210d65858ae852768e;73d6aa43f8f8e34dd096f17528d7f01d 1313 131716163 5ae9cefb8bb8af5af7b854926538cae7;1e7c9c2d99f5820c01a90c3ae33ed632 SAMEA4024759 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440490/ERR1440490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440490/ERR1440490_2.fastq.gz 1471855 WGS PHESPV1705 RANDOM 95267586;95301439 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 602661c3d81107884912a91fe60d43e6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440490/ERR1440490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440490/ERR1440490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440490/PHESPV1705.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440490/PHESPV1705.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440490/ERR1440490_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440490/ERR1440490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440490/PHESPV1705.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440490/PHESPV1705.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91490639;91545494 ERS1195869 ERX1510868 GENOMIC 284304497 2016-06-10 PHESPV1705 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440490/PHESPV1705.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440490/PHESPV1705.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440490 PHESPV1705 ERR1440511 PHESPV1726 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440511 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440511 4c6e5c05c00993110979fff974fdf999;4c15359ab9f763b34cdebeceddf4ef8b 1313 117605459 63a2278566be449354a82314c1f2af6e;1392b946bd1b1e8a05f0b338cd438d6a SAMEA4024780 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440511/ERR1440511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440511/ERR1440511_2.fastq.gz 1304475 WGS PHESPV1726 RANDOM 84705763;85242919 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc09e9d147bdd6aeea43dd14ef54eb53 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440511/ERR1440511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440511/ERR1440511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440511/PHESPV1726.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440511/PHESPV1726.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440511/ERR1440511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440511/ERR1440511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440511/PHESPV1726.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440511/PHESPV1726.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81456859;82003624 ERS1195890 ERX1510889 GENOMIC 252821288 2016-06-10 PHESPV1726 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440511/PHESPV1726.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440511/PHESPV1726.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440511 PHESPV1726 ERR1440857 PHESPV2072 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440857 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440857 aea21664a995553ee1ac200310ced873;7a0dca131dd0b4f21996619244bff203 1313 322354434 c50e70e18a0fa61d8df1022fc512a048;6b3d2277026c2951e6bb5a3fa60ca3d4 SAMEA4025126 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440857/ERR1440857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440857/ERR1440857_2.fastq.gz 3661478 WGS PHESPV2072 RANDOM 233536851;237613142 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 33ccdd29c9933ecc04e1bae89caae2c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440857/ERR1440857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440857/ERR1440857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440857/PHESPV2072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440857/PHESPV2072.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440857/ERR1440857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440857/ERR1440857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440857/PHESPV2072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440857/PHESPV2072.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 223462749;227574727 ERS1196236 ERX1511235 GENOMIC 720886916 2016-06-10 PHESPV2072 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440857/PHESPV2072.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440857/PHESPV2072.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440857 PHESPV2072 ERR1440515 PHESPV1730 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440515 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440515 c994439bf87f304207b75b524e233438;b2921985bf4af361f5283f29b767ebe6 1313 130212072 beccd7c056d5f410939ed05a1908ee7e;d8a4b355c0e7f60c75573b1df797e445 SAMEA4024784 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440515/ERR1440515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440515/ERR1440515_2.fastq.gz 1457487 WGS PHESPV1730 RANDOM 94163032;94279602 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f154be83d8d95d713f6be4896e87b2d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440515/ERR1440515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440515/ERR1440515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440515/PHESPV1730.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440515/PHESPV1730.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440515/ERR1440515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440515/ERR1440515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440515/PHESPV1730.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440515/PHESPV1730.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90419005;90552145 ERS1195894 ERX1510893 GENOMIC 280958196 2016-06-10 PHESPV1730 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440515/PHESPV1730.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440515/PHESPV1730.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440515 PHESPV1730 ERR1439168 PHESPV0379 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439168 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439168 104a1bf97b936d868ad23157baca4101;eb518353c881a5edb3f6f60e3b01c01c 1313 115026427 30d97fe291fa2236ce0e6bf2f8debdf9;1361f158a4eabe286f3700042cde1127 SAMEA4023437 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439168/ERR1439168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439168/ERR1439168_2.fastq.gz 1263392 WGS PHESPV0379 RANDOM 83620399;82242299 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6c7b3cf544df2f0e44c6fec60be99282 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439168/ERR1439168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439168/ERR1439168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439168/PHESPV0379.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439168/PHESPV0379.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439168/ERR1439168_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439168/ERR1439168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439168/PHESPV0379.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439168/PHESPV0379.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80418350;79052235 ERS1194547 ERX1509546 GENOMIC 242337797 2016-06-10 PHESPV0379 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439168/PHESPV0379.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439168/PHESPV0379.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439168 PHESPV0379 ERR1439461 PHESPV0672 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439461 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439461 f4785e139c279ba861db2bf1bcceb779;651d6c0268aa59509a920f90c0bf36f1 1313 146874636 ac07d5f210451fe470a242cb0ea2fec5;8111172b852dc4f5857d3173d20bbc9b SAMEA4023730 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439461/ERR1439461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439461/ERR1439461_2.fastq.gz 1615222 WGS PHESPV0672 RANDOM 94757619;99012170 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f6289633176f04ebe0c3eb513a9688bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439461/ERR1439461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439461/ERR1439461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439461/PHESPV0672.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439461/PHESPV0672.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439461/ERR1439461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439461/ERR1439461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439461/PHESPV0672.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439461/PHESPV0672.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99986540;104153095 ERS1194840 ERX1509839 GENOMIC 318214537 2016-06-10 PHESPV0672 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439461/PHESPV0672.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439461/PHESPV0672.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439461 PHESPV0672 ERR1439622 PHESPV0833 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439622 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439622 9cedefa57de657a7b64480b07e588657;7f09dd3fe6d224e749dec44e03c129ac 1313 135208123 27b6ef02ff87332891dedb4c7c8bb6b0;a258739d43620de65ca0d67198af6e6b SAMEA4023891 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439622/ERR1439622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439622/ERR1439622_2.fastq.gz 1500276 WGS PHESPV0833 RANDOM 86678335;88865469 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 94369be6621580d8839081076d2e0d71 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439622/ERR1439622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439622/ERR1439622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439622/PHESPV0833.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439622/PHESPV0833.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439622/ERR1439622_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439622/ERR1439622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439622/PHESPV0833.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439622/PHESPV0833.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91518295;93656202 ERS1195001 ERX1510000 GENOMIC 295358325 2016-06-10 PHESPV0833 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439622/PHESPV0833.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439622/PHESPV0833.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439622 PHESPV0833 ERR1440336 PHESPV1551 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440336 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440336 9b1338c2eb9464b1d448c61c1c367bb5;9498e77442511cb946c1783caf96f043 1313 120697596 8f8b202cd1b10636c63d73c04bc82810;2694d189ada2a07942652af96488a37c SAMEA4024605 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440336/ERR1440336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440336/ERR1440336_2.fastq.gz 1318475 WGS PHESPV1551 RANDOM 80862289;81924741 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b893483d07b2d356253f9155db9bbaf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440336/ERR1440336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440336/ERR1440336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440336/PHESPV1551.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440336/PHESPV1551.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440336/ERR1440336_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440336/ERR1440336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440336/PHESPV1551.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440336/PHESPV1551.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85293061;86337564 ERS1195715 ERX1510714 GENOMIC 260918397 2016-06-10 PHESPV1551 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440336/PHESPV1551.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440336/PHESPV1551.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440336 PHESPV1551 ERR1440449 PHESPV1664 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440449 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440449 ee4a25b8febd140d31f91e085cbe8f04;4b690c01d9156aba83a89837e937d7f4 1313 145571188 0555a0921a40cfe649699a40ed0f521f;9df7dce2fb7e1293128ea015dca5f596 SAMEA4024718 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440449/ERR1440449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440449/ERR1440449_2.fastq.gz 1712830 WGS PHESPV1664 RANDOM 105915136;109210837 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6cd0cc14d3937736a3a4b71026fcc1af ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440449/ERR1440449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440449/ERR1440449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440449/PHESPV1664.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440449/PHESPV1664.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440449/ERR1440449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440449/ERR1440449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440449/PHESPV1664.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440449/PHESPV1664.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101526599;104784920 ERS1195828 ERX1510827 GENOMIC 338768963 2016-06-10 PHESPV1664 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440449/PHESPV1664.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440449/PHESPV1664.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440449 PHESPV1664 ERR1440503 PHESPV1718 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440503 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440503 7da685c3f4214b9663b3c6965feb4967;6a390c193cb3a2538251efa929556f35 1313 87116208 d9412fe57f796d7e1b2c32d06874e46b;bb2fdd8ca8d0f98249ca4a897e096557 SAMEA4024772 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440503/ERR1440503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440503/ERR1440503_2.fastq.gz 958214 WGS PHESPV1718 RANDOM 62536771;63526027 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a7fa81b3f4aa4d1e1942c72f8153a910 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440503/ERR1440503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440503/ERR1440503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440503/PHESPV1718.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440503/PHESPV1718.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440503/ERR1440503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440503/ERR1440503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440503/PHESPV1718.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440503/PHESPV1718.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60127473;61120209 ERS1195882 ERX1510881 GENOMIC 186340329 2016-06-10 PHESPV1718 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440503/PHESPV1718.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440503/PHESPV1718.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440503 PHESPV1718 ERR1440732 PHESPV1947 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440732 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440732 9ab2e004ebcc503d85c058ede840e8a4;bf9b671178bfd6b3b5830d318a4897d5 1313 159175160 af581daf413eaa048a60c61f3b6ed572;c410e47990770c007393d0403d4aa1a5 SAMEA4025001 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440732/ERR1440732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440732/ERR1440732_2.fastq.gz 1797805 WGS PHESPV1947 RANDOM 115363309;116616870 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 03b179e91d50214a1bad35b69e44479c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440732/ERR1440732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440732/ERR1440732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440732/PHESPV1947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440732/PHESPV1947.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440732/ERR1440732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440732/ERR1440732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440732/PHESPV1947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440732/PHESPV1947.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110616773;111869457 ERS1196111 ERX1511110 GENOMIC 350784408 2016-06-10 PHESPV1947 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440732/PHESPV1947.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440732/PHESPV1947.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440732 PHESPV1947 ERR1440748 PHESPV1963 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440748 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440748 3b5c6f752dd23d9f62d84608dfe0d402;dea9f01809e6e4dce166ad0d779191fe 1313 132963411 5416cc2070a5a89e8b2b348c469b2f40;e81441703722b80b1acdfd55f148485f SAMEA4025017 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440748/ERR1440748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440748/ERR1440748_2.fastq.gz 1504713 WGS PHESPV1963 RANDOM 96761864;97318368 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ad0bd79ab71706d46a20238b24accde ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440748/ERR1440748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440748/ERR1440748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440748/PHESPV1963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440748/PHESPV1963.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440748/ERR1440748_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440748/ERR1440748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440748/PHESPV1963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440748/PHESPV1963.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92903849;93460867 ERS1196127 ERX1511126 GENOMIC 294802169 2016-06-10 PHESPV1963 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440748/PHESPV1963.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440748/PHESPV1963.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440748 PHESPV1963 ERR1440756 PHESPV1971 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440756 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440756 b2bc9b541d4652f695e7684c6223855d;db79219f1fc42b4b108d1bf87b3bcaa6 1313 109518572 18ab7ff1ddb054f6eda31046fa33f7b3;d6fe76e88834b228a2cbcb483c4517b2 SAMEA4025025 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440756/ERR1440756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440756/ERR1440756_2.fastq.gz 1232836 WGS PHESPV1971 RANDOM 79357571;80247456 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 25ce3fdfcb65b61f74be265300a9259a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440756/ERR1440756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440756/ERR1440756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440756/PHESPV1971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440756/PHESPV1971.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440756/ERR1440756_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440756/ERR1440756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440756/PHESPV1971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440756/PHESPV1971.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76282443;77173423 ERS1196135 ERX1511134 GENOMIC 241135233 2016-06-10 PHESPV1971 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440756/PHESPV1971.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440756/PHESPV1971.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440756 PHESPV1971 ERR1440800 PHESPV2015 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440800 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440800 383a5486670d5d2ff66810ce4d55ec87;b8e035ab1fff745d0a28da95ae756a4f 1313 152623595 095f54bca509f98fa290b74c87fe9222;17e5b020d3ce61e34a5d62c3e324957f SAMEA4025069 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440800/ERR1440800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440800/ERR1440800_2.fastq.gz 1684984 WGS PHESPV2015 RANDOM 110387298;110945193 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f6a2309943ff9395b2aaaa73073be2b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440800/ERR1440800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440800/ERR1440800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440800/PHESPV2015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440800/PHESPV2015.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440800/ERR1440800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440800/ERR1440800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440800/PHESPV2015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440800/PHESPV2015.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105955241;106530123 ERS1196179 ERX1511178 GENOMIC 326546372 2016-06-10 PHESPV2015 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440800/PHESPV2015.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440800/PHESPV2015.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440800 PHESPV2015 ERR1440840 PHESPV2055 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440840 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440840 bcf9c8c10bb38ba69ca99ff927284bd1;57bda7cced27a4c06e9cfe5da0766f9f 1313 144262907 b9a78a86f6afa06b2de2830eefad00d3;2ae4891ba36ec72f5b8a36bb97b2fe88 SAMEA4025109 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440840/ERR1440840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440840/ERR1440840_2.fastq.gz 1596487 WGS PHESPV2055 RANDOM 104320642;104707380 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 875583af09dd4501084197afe351524d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440840/ERR1440840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440840/ERR1440840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440840/PHESPV2055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440840/PHESPV2055.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440840/ERR1440840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440840/ERR1440840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440840/PHESPV2055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440840/PHESPV2055.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100138288;100541406 ERS1196219 ERX1511218 GENOMIC 308325077 2016-06-10 PHESPV2055 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440840/PHESPV2055.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440840/PHESPV2055.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440840 PHESPV2055 ERR1438812 PHESPV0022 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438812 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438812 f98df2ad05966af58a3797aeed71e9d9;a485b0a0aa6b72ba28aba8852d332b86 1313 152018699 04b2886f9b6779d8058b346d55b00647;3983fdc6d36deb65a13c9efb949a4508 SAMEA4023081 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438812/ERR1438812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438812/ERR1438812_2.fastq.gz 1772602 WGS PHESPV0022 RANDOM 102090467;103355776 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3216d614396d032ed59e579bfe63cd3f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438812/ERR1438812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438812/ERR1438812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438812/PHESPV0022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438812/PHESPV0022.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438812/ERR1438812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438812/ERR1438812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438812/PHESPV0022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438812/PHESPV0022.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107837126;109109604 ERS1194191 ERX1509190 GENOMIC 352145928 2016-06-10 PHESPV0022 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438812/PHESPV0022.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438812/PHESPV0022.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438812 PHESPV0022 ERR1438976 PHESPV0186 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438976 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438976 67accf36c8804f5c2caca48a74832b38;81deec73033d0ffb9c41597276b9fb7b 1313 74941043 03f7e9988a726a0821fae1c0fc92b64d;8988d26e3caea411c6b2722d62b9069b SAMEA4023245 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438976/ERR1438976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438976/ERR1438976_2.fastq.gz 853487 WGS PHESPV0186 RANDOM 49760697;51622164 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 919c6e80b98b720bf786d2a191bdffb9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438976/ERR1438976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438976/ERR1438976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438976/PHESPV0186.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438976/PHESPV0186.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438976/ERR1438976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438976/ERR1438976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438976/PHESPV0186.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438976/PHESPV0186.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52751873;54584074 ERS1194355 ERX1509354 GENOMIC 169043471 2016-06-10 PHESPV0186 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438976/PHESPV0186.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438976/PHESPV0186.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438976 PHESPV0186 ERR1440701 PHESPV1916 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440701 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440701 d6ee2bdd26ab70d034567668e18d758f;2f21f21bb44bb4d6ad195269fd4ee6ac 1313 114785809 1034593180524742f26c18b8ff92c014;2d4a812f09a4a5ac0460ec9054bc4b11 SAMEA4024970 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440701/ERR1440701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440701/ERR1440701_2.fastq.gz 1251338 WGS PHESPV1916 RANDOM 81758700;82294603 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 111068fbe58505909cb45ad9e83f0ee4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440701/ERR1440701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440701/ERR1440701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440701/PHESPV1916.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440701/PHESPV1916.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440701/ERR1440701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440701/ERR1440701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440701/PHESPV1916.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440701/PHESPV1916.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78510639;79042372 ERS1196080 ERX1511079 GENOMIC 241395239 2016-06-10 PHESPV1916 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440701/PHESPV1916.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440701/PHESPV1916.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440701 PHESPV1916 ERR1439038 PHESPV0249 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439038 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439038 64baebcfe7b2c6c600c9998986b393ca;4a8215271d9d7e72085471b778db4240 1313 68843511 cb4d20f442d682c8eaf97d27f0b1849b;a570f69dfdafea4e0b245895442c57e0 SAMEA4023307 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439038/ERR1439038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439038/ERR1439038_2.fastq.gz 789592 WGS PHESPV0249 RANDOM 46213666;47220549 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2e802018b852e38ae7969e17b9e857a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439038/ERR1439038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439038/ERR1439038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439038/PHESPV0249.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439038/PHESPV0249.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439038/ERR1439038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439038/ERR1439038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439038/PHESPV0249.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439038/PHESPV0249.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49031295;50032689 ERS1194417 ERX1509416 GENOMIC 156677067 2016-06-10 PHESPV0249 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439038/PHESPV0249.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439038/PHESPV0249.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439038 PHESPV0249 ERR1440807 PHESPV2022 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440807 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440807 d68f72bcfcb336d95b510d716833f7cc;458fbd1957bcf619e782102e9e6ed3c7 1313 178341819 f1f5d7e5bcd7cd9c2a9fefebb813bfcb;f8f66e5c3e5570c6e437a97aba19d335 SAMEA4025076 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440807/ERR1440807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440807/ERR1440807_2.fastq.gz 1952842 WGS PHESPV2022 RANDOM 129045579;129141922 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 095aa69843b268dd5c19b4d23d1fdc45 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440807/ERR1440807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440807/ERR1440807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440807/PHESPV2022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440807/PHESPV2022.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440807/ERR1440807_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440807/ERR1440807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440807/PHESPV2022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440807/PHESPV2022.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123945416;124058599 ERS1196186 ERX1511185 GENOMIC 381065374 2016-06-10 PHESPV2022 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440807/PHESPV2022.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440807/PHESPV2022.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440807 PHESPV2022 ERR1440809 PHESPV2024 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440809 23eff69bb8e9836c7f301a322e50d00e;e72e61821817b1591f6e267a413d512f 1313 151323604 b6961a4bafc4c87dea44090dd66f8a16;da799c64ac80a0d741a21eb7c05ebc09 SAMEA4025078 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440809/ERR1440809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440809/ERR1440809_2.fastq.gz 1662104 WGS PHESPV2024 RANDOM 109108685;110043413 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 252cf177ca2ce6c90aa13d4420ee8792 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440809/ERR1440809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440809/ERR1440809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440809/PHESPV2024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440809/PHESPV2024.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440809/ERR1440809_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440809/ERR1440809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440809/PHESPV2024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440809/PHESPV2024.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104774112;105715845 ERS1196188 ERX1511187 GENOMIC 323131603 2016-06-10 PHESPV2024 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440809/PHESPV2024.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440809/PHESPV2024.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440809 PHESPV2024 ERR1440833 PHESPV2048 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440833 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440833 36c67e47a1f428cd801b87beea3bae7a;3a3f087299feddbde6b836cf22e494f0 1313 131054189 9ef809f217265923db77d2a0ff80da3f;c0a7908eaa461efed6fc2bafad4889e2 SAMEA4025102 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440833/ERR1440833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440833/ERR1440833_2.fastq.gz 1396419 WGS PHESPV2048 RANDOM 92924531;95545972 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 19c17d4a51ce4f9cbc55ff613fc2bfa7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440833/ERR1440833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440833/ERR1440833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440833/PHESPV2048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440833/PHESPV2048.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440833/ERR1440833_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440833/ERR1440833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440833/PHESPV2048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440833/PHESPV2048.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89362043;91975534 ERS1196212 ERX1511211 GENOMIC 270738660 2016-06-10 PHESPV2048 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440833/PHESPV2048.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440833/PHESPV2048.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440833 PHESPV2048 ERR1438819 PHESPV0029 100 d57ed650ac016c128861f45826737e28;f7086e4c769318e17e3958dc9c3a89e2 1313 e6477e3f530fc250654b7ccd877aded7;f6308e717491040a7fda31059b47003a SAMEA4023088 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438819/ERR1438819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438819/ERR1438819_2.fastq.gz 2807562 WGS PHESPV0029 RANDOM 65579813;66093438 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438819/ERR1438819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438819/ERR1438819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438819/PHESPV0029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438819/PHESPV0029.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438819/ERR1438819_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438819/ERR1438819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438819/PHESPV0029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438819/PHESPV0029.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62780579;63338487 ERS1194198 ERX1509197 GENOMIC 278547877 2016-06-10 PHESPV0029 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438819/PHESPV0029.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438819/PHESPV0029.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 PHESPV0029 ERR1440849 PHESPV2064 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440849 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440849 275dc18afe0487f9acd775363924ef1f;5aa9fc74e53b421a8e4f1822780200b0 1313 174147933 7a03b0de2b4e5dd29c19e88b09e878f3;958edcc5501b617d64b53cba0cf20f15 SAMEA4025118 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440849/ERR1440849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440849/ERR1440849_2.fastq.gz 1884517 WGS PHESPV2064 RANDOM 124855292;125464118 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d5d61f5dd7dd9ebc59fdc7c56008a360 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440849/ERR1440849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440849/ERR1440849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440849/PHESPV2064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440849/PHESPV2064.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440849/ERR1440849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440849/ERR1440849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440849/PHESPV2064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440849/PHESPV2064.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119902321;120529575 ERS1196228 ERX1511227 GENOMIC 362667503 2016-06-10 PHESPV2064 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440849/PHESPV2064.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440849/PHESPV2064.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440849 PHESPV2064 ERR1439106 PHESPV0317 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439106 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439106 671d2831a038160e77d3a496b6a82344;b40ade308c49f8413fc2f44af9109630 1313 92130680 e687710e253e824310965b87d2ace9de;b97d6334e966065e42d22d7b3ee74aa4 SAMEA4023375 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439106/ERR1439106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439106/ERR1439106_2.fastq.gz 998298 WGS PHESPV0317 RANDOM 66594781;66553469 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10405a053cee7f5d8518b10fea3410b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439106/ERR1439106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439106/ERR1439106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439106/PHESPV0317.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439106/PHESPV0317.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439106/ERR1439106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439106/ERR1439106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439106/PHESPV0317.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439106/PHESPV0317.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64043963;64014849 ERS1194485 ERX1509484 GENOMIC 195579685 2016-06-10 PHESPV0317 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439106/PHESPV0317.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439106/PHESPV0317.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439106 PHESPV0317 ERR1439110 PHESPV0321 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439110 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439110 f7cc22fe349b751c6853b5ba08f995da;ed61a6d93b1407d4a6eeee33dcb183b6 1313 170397597 eb0abe564c25cf7867aca2158aa9429b;e00bdb9b97d4b7df2036f707b7b95848 SAMEA4023379 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439110/ERR1439110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439110/ERR1439110_2.fastq.gz 1835308 WGS PHESPV0321 RANDOM 122256721;123138663 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1fed5925e22aa4ce0b56602889be5246 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439110/ERR1439110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439110/ERR1439110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439110/PHESPV0321.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439110/PHESPV0321.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439110/ERR1439110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439110/ERR1439110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439110/PHESPV0321.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439110/PHESPV0321.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117377275;118267749 ERS1194489 ERX1509488 GENOMIC 358936609 2016-06-10 PHESPV0321 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439110/PHESPV0321.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439110/PHESPV0321.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439110 PHESPV0321 ERR1439148 PHESPV0359 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439148 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439148 affab4cbd8fcc12dd29e6c3e1ac37db1;42f695d71b6fcd787cb117766355f2f8 1313 117955490 ca4cb12eb9bb2d8125a52275e59554ef;04aded96f4a89f4a03efc0665301b998 SAMEA4023417 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439148/ERR1439148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439148/ERR1439148_2.fastq.gz 1266063 WGS PHESPV0359 RANDOM 83920429;85903854 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f9b090473924591588bd84531d66ec3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439148/ERR1439148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439148/ERR1439148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439148/PHESPV0359.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439148/PHESPV0359.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439148/ERR1439148_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439148/ERR1439148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439148/PHESPV0359.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439148/PHESPV0359.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80697835;82674201 ERS1194527 ERX1509526 GENOMIC 248064571 2016-06-10 PHESPV0359 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439148/PHESPV0359.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439148/PHESPV0359.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439148 PHESPV0359 ERR1439179 PHESPV0390 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439179 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439179 f76138020a5b85d0209c869cee4a51cb;63003bb76ae791e6029e50a07c3c8e6b 1313 150103207 144d63fad1b9a2c0ac0605cd8180a3c9;55f487bc77645b1bc3577ab994ce62cd SAMEA4023448 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439179/ERR1439179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439179/ERR1439179_2.fastq.gz 1641910 WGS PHESPV0390 RANDOM 109046037;107830136 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9ef75393c520a8ff3f4dce3c7532917d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439179/ERR1439179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439179/ERR1439179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439179/PHESPV0390.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439179/PHESPV0390.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439179/ERR1439179_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439179/ERR1439179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439179/PHESPV0390.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439179/PHESPV0390.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104730363;103539606 ERS1194558 ERX1509557 GENOMIC 319138311 2016-06-10 PHESPV0390 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439179/PHESPV0390.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439179/PHESPV0390.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439179 PHESPV0390 ERR1439210 PHESPV0421 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439210 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439210 64159c03611ed1723be800d2c8c6ef4f;b1e49c0f71ccce20338747435abca507 1313 79382390 0009d2e8cc41b414b8c0f1843897ba73;47f70aaa60478c5abd29e75c995eccfb SAMEA4023479 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439210/ERR1439210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439210/ERR1439210_2.fastq.gz 863843 WGS PHESPV0421 RANDOM 56842895;57682826 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 094f26857e1209905051a6c5f7f56deb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439210/ERR1439210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439210/ERR1439210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439210/PHESPV0421.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439210/PHESPV0421.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439210/ERR1439210_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439210/ERR1439210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439210/PHESPV0421.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439210/PHESPV0421.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54647618;55494799 ERS1194589 ERX1509588 GENOMIC 166756406 2016-06-10 PHESPV0421 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439210/PHESPV0421.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439210/PHESPV0421.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439210 PHESPV0421 ERR1439212 PHESPV0423 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439212 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439212 546516c8b9dfd32113ec29a6bfdcdc90;5786196302258676eb6305a57d52a65f 1313 132567965 cc03056362b4435c0dab5743582726c8;d1f87aa28c8a81478af33a894d902936 SAMEA4023481 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439212/ERR1439212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439212/ERR1439212_2.fastq.gz 1463590 WGS PHESPV0423 RANDOM 96338513;95303604 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 359d1f6ebe2e3965a0a0d3f0eb6c2757 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439212/ERR1439212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439212/ERR1439212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439212/PHESPV0423.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439212/PHESPV0423.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439212/ERR1439212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439212/ERR1439212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439212/PHESPV0423.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439212/PHESPV0423.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92561795;91545262 ERS1194591 ERX1509590 GENOMIC 282761583 2016-06-10 PHESPV0423 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439212/PHESPV0423.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439212/PHESPV0423.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439212 PHESPV0423 ERR1439241 PHESPV0452 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439241 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439241 f60a4f22ed050261b509bfcc467794c7;c18ead33f3c4df900360ac30d3916592 1313 205235000 b8cfdb716ade83a535e5b477066bca2f;eebf7c67f041d911547805e69ace18a9 SAMEA4023510 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439241/ERR1439241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439241/ERR1439241_2.fastq.gz 2490184 WGS PHESPV0452 RANDOM 137515827;143233806 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bdf959bd32b50af5eb5d0cef67ddec22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439241/ERR1439241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439241/ERR1439241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439241/PHESPV0452.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439241/PHESPV0452.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439241/ERR1439241_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439241/ERR1439241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439241/PHESPV0452.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439241/PHESPV0452.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 145327739;150976243 ERS1194620 ERX1509619 GENOMIC 485073474 2016-06-10 PHESPV0452 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439241/PHESPV0452.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439241/PHESPV0452.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439241 PHESPV0452 ERR1439246 PHESPV0457 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439246 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439246 e0b94aab55d22f4d9c4f8a3eba2b2aea;af19bee77a149162505a8887c57b1800 1313 86081370 a5e17613ddc43f11a03c4a6efaf5ef45;a57d168c704765c8f5503c15942b8885 SAMEA4023515 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439246/ERR1439246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439246/ERR1439246_2.fastq.gz 951190 WGS PHESPV0457 RANDOM 62639112;62024661 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 34b719f62896e78ad4927ba64a7bc44e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439246/ERR1439246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439246/ERR1439246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439246/PHESPV0457.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439246/PHESPV0457.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439246/ERR1439246_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439246/ERR1439246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439246/PHESPV0457.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439246/PHESPV0457.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60200416;59604387 ERS1194625 ERX1509624 GENOMIC 183849154 2016-06-10 PHESPV0457 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439246/PHESPV0457.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439246/PHESPV0457.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439246 PHESPV0457 ERR1439298 PHESPV0509 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439298 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439298 bdd062c2a56531081e148ac2fcfb5efc;82cba407212848534f37eef67b4aafd1 1313 140412142 9d5d8dc582799281608ec6d7aa24108e;a963e546766d74200c98cc7b4688b206 SAMEA4023567 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439298/ERR1439298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439298/ERR1439298_2.fastq.gz 1530889 WGS PHESPV0509 RANDOM 101872860;100823153 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e7e4ce4cb6302e4bb5feee65613781bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439298/ERR1439298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439298/ERR1439298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439298/PHESPV0509.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439298/PHESPV0509.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439298/ERR1439298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439298/ERR1439298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439298/PHESPV0509.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439298/PHESPV0509.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97889345;96861088 ERS1194677 ERX1509676 GENOMIC 294007740 2016-06-10 PHESPV0509 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439298/PHESPV0509.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439298/PHESPV0509.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439298 PHESPV0509 ERR1439429 PHESPV0640 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439429 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439429 f685997850e474f869edb2a53a6ad776;d4b01aec215fb4dbf091022ddcf75e5f 1313 94194224 ba61cbde0c36be1ee8ef93062f3cd307;05a5bb0e2d54e5400adcfa7dc4ccfb9b SAMEA4023698 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439429/ERR1439429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439429/ERR1439429_2.fastq.gz 1037211 WGS PHESPV0640 RANDOM 67228264;68936666 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 105d2c2c6781c8847650319e77e5e4b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439429/ERR1439429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439429/ERR1439429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439429/PHESPV0640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439429/PHESPV0640.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439429/ERR1439429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439429/ERR1439429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439429/PHESPV0640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439429/PHESPV0640.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64591943;66307628 ERS1194808 ERX1509807 GENOMIC 200733320 2016-06-10 PHESPV0640 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439429/PHESPV0640.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439429/PHESPV0640.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439429 PHESPV0640 ERR1439611 PHESPV0822 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439611 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439611 36b9b76548b2ca1e1d1dacd601effaeb;694812254d63e91e1d6776553ec7d143 1313 189137199 32bbe2bc26c5e01b93dab51aa9ed6c5f;b8133bad274de9d6693982ddd7afe590 SAMEA4023880 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439611/ERR1439611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439611/ERR1439611_2.fastq.gz 2059127 WGS PHESPV0822 RANDOM 135874733;136492971 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cec3f0d22efa065d076ceb2e378403bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439611/ERR1439611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439611/ERR1439611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439611/PHESPV0822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439611/PHESPV0822.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439611/ERR1439611_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439611/ERR1439611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439611/PHESPV0822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439611/PHESPV0822.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130545439;131162092 ERS1194990 ERX1509989 GENOMIC 393332471 2016-06-10 PHESPV0822 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439611/PHESPV0822.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439611/PHESPV0822.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439611 PHESPV0822 ERR1439640 PHESPV0851 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439640 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439640 a2443d8578987ca664e7e8bb1c309e9c;0c938811a6ec49251625ddce3f344cfa 1313 151664791 23d44473d15a1ad521b2f6f9cb379099;efdd894063e462fdb251a2462c426bf1 SAMEA4023909 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439640/ERR1439640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439640/ERR1439640_2.fastq.gz 1621970 WGS PHESPV0851 RANDOM 109411749;109567900 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d65ad190720962b21b53734cf006db2b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439640/ERR1439640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439640/ERR1439640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439640/PHESPV0851.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439640/PHESPV0851.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439640/ERR1439640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439640/ERR1439640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439640/PHESPV0851.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439640/PHESPV0851.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105189291;105342594 ERS1195019 ERX1510018 GENOMIC 316760987 2016-06-10 PHESPV0851 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439640/PHESPV0851.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439640/PHESPV0851.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439640 PHESPV0851 ERR1439659 PHESPV0870 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439659 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439659 c612a40f638a02937b1cf9157214e6f6;68c4d0ace6a4ee7a073dd30e0f962c1b 1313 153917294 a131f37a720543f7eff25644a5f21761;476b4dffab4976261de459b878008444 SAMEA4023928 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439659/ERR1439659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439659/ERR1439659_2.fastq.gz 1763671 WGS PHESPV0870 RANDOM 112519143;112010856 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3eca2cc537ebc7dc3bd997b2b5041dae ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439659/ERR1439659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439659/ERR1439659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439659/PHESPV0870.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439659/PHESPV0870.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439659/ERR1439659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439659/ERR1439659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439659/PHESPV0870.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439659/PHESPV0870.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107891076;107416915 ERS1195038 ERX1510037 GENOMIC 338911538 2016-06-10 PHESPV0870 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439659/PHESPV0870.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439659/PHESPV0870.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439659 PHESPV0870 ERR1439661 PHESPV0872 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439661 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439661 8b5e71d24a8b71d121e2945f7c3ca497;58329834585dc381964aea74022042cc 1313 141797777 8cdf2eb072cf1f897049a2bc31555836;59e5d7d335721f63da0d10cf21f232ab SAMEA4023930 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439661/ERR1439661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439661/ERR1439661_2.fastq.gz 1608899 WGS PHESPV0872 RANDOM 102976416;103393696 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f8d75f195f7fb43e8b8eec2c9754bff6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439661/ERR1439661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439661/ERR1439661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439661/PHESPV0872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439661/PHESPV0872.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439661/ERR1439661_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439661/ERR1439661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439661/PHESPV0872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439661/PHESPV0872.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98774582;99212208 ERS1195040 ERX1510039 GENOMIC 308698947 2016-06-10 PHESPV0872 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439661/PHESPV0872.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439661/PHESPV0872.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439661 PHESPV0872 ERR1439716 PHESPV0927 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439716 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439716 a0eceaa9e40e3b7d613d6a4e3f8b7f92;34c3058ef559ad5df9a3fc42b9bd05e3 1313 168681349 be27e6f732b75b7b94cc6f22e87f3257;b51e721c459405e56f1cfb3fed616874 SAMEA4023985 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439716/ERR1439716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439716/ERR1439716_2.fastq.gz 1895299 WGS PHESPV0927 RANDOM 121645483;123480667 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c561f1f7f17820574284e18852506b3f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439716/ERR1439716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439716/ERR1439716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439716/PHESPV0927.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439716/PHESPV0927.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439716/ERR1439716_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439716/ERR1439716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439716/PHESPV0927.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439716/PHESPV0927.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116684896;118534794 ERS1195095 ERX1510094 GENOMIC 365990619 2016-06-10 PHESPV0927 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439716/PHESPV0927.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439716/PHESPV0927.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439716 PHESPV0927 ERR1439717 PHESPV0928 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439717 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439717 cf7c69cb4a28a7a3f2ac7b2d81f5e293;843182a8f6fdc9175b350526a00f4206 1313 191284133 a1a2b00399249bf263d4864ce968a6cc;95e283787fa0538f21b8cc03ea9ecda8 SAMEA4023986 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439717/ERR1439717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439717/ERR1439717_2.fastq.gz 2173540 WGS PHESPV0928 RANDOM 138535941;139018396 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c90c314314f4a1675e74b1775e0b6e4f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439717/ERR1439717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439717/ERR1439717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439717/PHESPV0928.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439717/PHESPV0928.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439717/ERR1439717_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439717/ERR1439717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439717/PHESPV0928.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439717/PHESPV0928.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132908941;133415013 ERS1195096 ERX1510095 GENOMIC 414104747 2016-06-10 PHESPV0928 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439717/PHESPV0928.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439717/PHESPV0928.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439717 PHESPV0928 ERR1439721 PHESPV0932 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439721 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439721 c18c1c7e6b3bff618b5ed715a793cbed;6cc7e79f43bd7566f3b914527eebc67f 1313 152506931 c8cc5c47070e80dd112ed143fd094be1;e2ec20f2d12cae6854c17104b082a111 SAMEA4023990 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439721/ERR1439721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439721/ERR1439721_2.fastq.gz 1689236 WGS PHESPV0932 RANDOM 108841947;111985167 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d74d4e4a3c867617b48d0f87dd539c76 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439721/ERR1439721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439721/ERR1439721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439721/PHESPV0932.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439721/PHESPV0932.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439721/ERR1439721_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439721/ERR1439721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439721/PHESPV0932.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439721/PHESPV0932.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104430685;107577518 ERS1195100 ERX1510099 GENOMIC 324417877 2016-06-10 PHESPV0932 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439721/PHESPV0932.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439721/PHESPV0932.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439721 PHESPV0932 ERR1439761 PHESPV0972 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439761 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439761 d02fac288068b3483e815aa8f12ba705;bce7f97ef174495a89d91f8b8255f1bc 1313 169814027 d0d00a8247c219104b979fcdf1ab710e;1b07bedfe0d6ae8f918559104981e6e4 SAMEA4024030 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439761/ERR1439761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439761/ERR1439761_2.fastq.gz 1958720 WGS PHESPV0972 RANDOM 123317727;123549683 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5334c9605d4f86d0063cd0fdd3bcb479 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439761/ERR1439761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439761/ERR1439761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439761/PHESPV0972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439761/PHESPV0972.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439761/ERR1439761_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439761/ERR1439761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439761/PHESPV0972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439761/PHESPV0972.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118182793;118442757 ERS1195140 ERX1510139 GENOMIC 368005457 2016-06-10 PHESPV0972 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439761/PHESPV0972.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439761/PHESPV0972.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439761 PHESPV0972 ERR1439766 PHESPV0977 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439766 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439766 012580154ee531328638b23e8bd6b125;b1a1fcc623c4a7fa5c9d91647d65ecef 1313 143421773 6661931b786aa18dd15c8e0912823c69;f8cb73ff454d57f0dc888bd663a935d4 SAMEA4024035 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439766/ERR1439766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439766/ERR1439766_2.fastq.gz 1618771 WGS PHESPV0977 RANDOM 103850164;104112668 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d3a911cbcd63ed199c4cf60b2241153f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439766/ERR1439766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439766/ERR1439766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439766/PHESPV0977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439766/PHESPV0977.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439766/ERR1439766_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439766/ERR1439766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439766/PHESPV0977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439766/PHESPV0977.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99612459;99896212 ERS1195145 ERX1510144 GENOMIC 306351950 2016-06-10 PHESPV0977 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439766/PHESPV0977.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439766/PHESPV0977.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439766 PHESPV0977 ERR1439767 PHESPV0978 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439767 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439767 acd397db4c6ad2e949f74e7cf9f73cc9;a9928c0935d1d3e44a7e2dd574a0bab5 1313 140704562 ae609343f81daf5e2dcb84fd5bd947fd;291c0b637c10278a5d0afebea1925d95 SAMEA4024036 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439767/ERR1439767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439767/ERR1439767_2.fastq.gz 1605922 WGS PHESPV0978 RANDOM 101718070;102770148 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d372a7ad1daab773b1c4b5b953221696 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439767/ERR1439767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439767/ERR1439767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439767/PHESPV0978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439767/PHESPV0978.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439767/ERR1439767_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439767/ERR1439767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439767/PHESPV0978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439767/PHESPV0978.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97509486;98581046 ERS1195146 ERX1510145 GENOMIC 304086652 2016-06-10 PHESPV0978 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439767/PHESPV0978.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439767/PHESPV0978.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439767 PHESPV0978 ERR1439798 PHESPV1009 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439798 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439798 0e8b0c089be64154c5df23aad772bd7a;1af6e26dfbda9f8fcbe5a75edda8b7f6 1313 173899358 9a6e39e8544b220a51a7ea46d2959b02;b61a1dbc9b2961f7c0cd4737fff38026 SAMEA4024067 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439798/ERR1439798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439798/ERR1439798_2.fastq.gz 1913472 WGS PHESPV1009 RANDOM 113120815;118558335 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 72e23908b5087a59578cae8beb955728 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439798/ERR1439798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439798/ERR1439798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439798/PHESPV1009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439798/PHESPV1009.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439798/ERR1439798_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439798/ERR1439798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439798/PHESPV1009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439798/PHESPV1009.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119190740;124537174 ERS1195177 ERX1510176 GENOMIC 377536959 2016-06-10 PHESPV1009 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439798/PHESPV1009.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439798/PHESPV1009.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439798 PHESPV1009 ERR1439855 PHESPV1066 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439855 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439855 25e6747beb6724b529fe789edad0fc14;609c212f8830c05a3a7c0349a2691952 1313 119119342 1c487120de95de00f873986ec8f32b43;5de25d39b3c3a2f3aededcd56f239191 SAMEA4024124 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439855/ERR1439855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439855/ERR1439855_2.fastq.gz 1304024 WGS PHESPV1066 RANDOM 79682453;81074743 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69f635e932193a28450ac0e78027a36d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439855/ERR1439855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439855/ERR1439855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439855/PHESPV1066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439855/PHESPV1066.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439855/ERR1439855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439855/ERR1439855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439855/PHESPV1066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439855/PHESPV1066.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84096787;85472282 ERS1195234 ERX1510233 GENOMIC 258005889 2016-06-10 PHESPV1066 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439855/PHESPV1066.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439855/PHESPV1066.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439855 PHESPV1066 ERR1440245 PHESPV1460 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440245 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440245 a4d25eda9b2698589c1e44c4937534ba;34773cd9cf7c3226c9e172eb9112a054 1313 144101014 dd731d4235a2f094c1ef1ebe4c4e4737;c8f07a0c6033efc041c4ee290ebfc2b1 SAMEA4024514 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440245/ERR1440245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440245/ERR1440245_2.fastq.gz 1570193 WGS PHESPV1460 RANDOM 95896137;98429654 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9b98c8400b1f396c14c3b7b1c623faf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440245/ERR1440245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440245/ERR1440245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440245/PHESPV1460.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440245/PHESPV1460.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440245/ERR1440245_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440245/ERR1440245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440245/PHESPV1460.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440245/PHESPV1460.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101108106;103594731 ERS1195624 ERX1510623 GENOMIC 310482213 2016-06-10 PHESPV1460 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440245/PHESPV1460.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440245/PHESPV1460.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440245 PHESPV1460 ERR1440300 PHESPV1515 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440300 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440300 0d9c58ea7b7737fd593121d874abdd0e;12477c1fa335c394b407e3edf7c01dc1 1313 130985512 917e658923ef49299a5c7a70327827a2;d450a6d685042bf6c912d4da0abe9c3e SAMEA4024569 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440300/ERR1440300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440300/ERR1440300_2.fastq.gz 1573598 WGS PHESPV1515 RANDOM 88358215;91088674 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8bb8199a6822957aad6ad67a9ea9c481 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440300/ERR1440300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440300/ERR1440300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440300/PHESPV1515.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440300/PHESPV1515.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440300/ERR1440300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440300/ERR1440300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440300/PHESPV1515.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440300/PHESPV1515.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93546601;96271801 ERS1195679 ERX1510678 GENOMIC 312571472 2016-06-10 PHESPV1515 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440300/PHESPV1515.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440300/PHESPV1515.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440300 PHESPV1515 ERR1440363 PHESPV1578 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440363 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440363 ac5931aad503960a54ac52f4bfbf3534;3c4853e4c75390bd889ffeecb06114e7 1313 122966442 0de883565b07bd4b440c3bf07338c5b0;3687701e56d0de55efbb6180067922d1 SAMEA4024632 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440363/ERR1440363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440363/ERR1440363_2.fastq.gz 1446959 WGS PHESPV1578 RANDOM 89393733;91891100 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5de1c893bebd90ad5de754e3242c96f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440363/ERR1440363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440363/ERR1440363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440363/PHESPV1578.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440363/PHESPV1578.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440363/ERR1440363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440363/ERR1440363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440363/PHESPV1578.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440363/PHESPV1578.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85834150;88292393 ERS1195742 ERX1510741 GENOMIC 284752918 2016-06-10 PHESPV1578 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440363/PHESPV1578.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440363/PHESPV1578.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440363 PHESPV1578 ERR1440378 PHESPV1593 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440378 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440378 6355a27160a616bf0ee019f394fffcdd;db0f670f71a890d42e3ec87bae363109 1313 88472265 6bb0d0aaa82a69ff506bb2ca12f9b678;9ea46f1471f301c6d0b47cb31c1b4df9 SAMEA4024647 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440378/ERR1440378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440378/ERR1440378_2.fastq.gz 1018465 WGS PHESPV1593 RANDOM 63528677;66562121 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4453c53b5cb75133ba593990a3e84856 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440378/ERR1440378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440378/ERR1440378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440378/PHESPV1593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440378/PHESPV1593.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440378/ERR1440378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440378/ERR1440378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440378/PHESPV1593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440378/PHESPV1593.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61027422;64004048 ERS1195757 ERX1510756 GENOMIC 201433457 2016-06-10 PHESPV1593 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440378/PHESPV1593.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440378/PHESPV1593.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440378 PHESPV1593 ERR1440600 PHESPV1815 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440600 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440600 be7c6f29125754ad8ad4594a5ea47f6d;87d77aee06235bf91797afd4a92b973e 1313 129665181 e73c01f672d56121a58c355c25342766;6a129b62a8f8cfb503c42087482ee7eb SAMEA4024869 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440600/ERR1440600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440600/ERR1440600_2.fastq.gz 1468128 WGS PHESPV1815 RANDOM 92602679;96235200 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be668ce90906af0e4a8c7d3814603147 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440600/ERR1440600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440600/ERR1440600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440600/PHESPV1815.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440600/PHESPV1815.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440600/ERR1440600_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440600/ERR1440600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440600/PHESPV1815.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440600/PHESPV1815.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88829365;92405856 ERS1195979 ERX1510978 GENOMIC 288026485 2016-06-10 PHESPV1815 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440600/PHESPV1815.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440600/PHESPV1815.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440600 PHESPV1815 ERR1440607 PHESPV1822 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440607 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440607 c11f7f7968899f71c67fca349a3bdc79;bb06d1eabfb7d4429feeb0fa889a6dbd 1313 126293355 9ac804cd88ff521b64bb4c2048b41502;de64c22b548964e01db1a6949e2aafeb SAMEA4024876 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440607/ERR1440607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440607/ERR1440607_2.fastq.gz 1434798 WGS PHESPV1822 RANDOM 90073209;93854787 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d5cbf9632d8adc505b9937e42deaf2dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440607/ERR1440607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440607/ERR1440607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440607/PHESPV1822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440607/PHESPV1822.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440607/ERR1440607_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440607/ERR1440607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440607/PHESPV1822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440607/PHESPV1822.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86425591;90154433 ERS1195986 ERX1510985 GENOMIC 280802847 2016-06-10 PHESPV1822 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440607/PHESPV1822.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440607/PHESPV1822.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440607 PHESPV1822 ERR1440612 PHESPV1827 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440612 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440612 9fe8b49dfb1262ccd26ea680aa783ed6;c0d8bb676aa62f500714e2382efcf71e 1313 120312602 b22d7660b1fc1fe137a21c48e9d50028;b72c1a22f1665ad3a598a1b458ae444f SAMEA4024881 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440612/ERR1440612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440612/ERR1440612_2.fastq.gz 1399551 WGS PHESPV1827 RANDOM 86496710;89133371 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d08ea3d71b9eabcb506bc412366bdb81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440612/ERR1440612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440612/ERR1440612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440612/PHESPV1827.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440612/PHESPV1827.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440612/ERR1440612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440612/ERR1440612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440612/PHESPV1827.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440612/PHESPV1827.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82932482;85533598 ERS1195991 ERX1510990 GENOMIC 269913825 2016-06-10 PHESPV1827 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440612/PHESPV1827.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440612/PHESPV1827.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440612 PHESPV1827 ERR1440623 PHESPV1838 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440623 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440623 1330ffed5977fd05f1bf88a7d204b484;e116bd7f2c3893e459069fde877e0d9e 1313 141072391 658b39efd000757d97255dcaf9940722;c47c6f47d9035eb8bb3d21323c3b1672 SAMEA4024892 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440623/ERR1440623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440623/ERR1440623_2.fastq.gz 1621352 WGS PHESPV1838 RANDOM 101112299;104754667 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a312fd704a1d4b58ec15859087858bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440623/ERR1440623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440623/ERR1440623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440623/PHESPV1838.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440623/PHESPV1838.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440623/ERR1440623_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440623/ERR1440623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440623/PHESPV1838.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440623/PHESPV1838.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96919142;100509665 ERS1196002 ERX1511001 GENOMIC 315731344 2016-06-10 PHESPV1838 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440623/PHESPV1838.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440623/PHESPV1838.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440623 PHESPV1838 ERR1440626 PHESPV1841 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440626 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440626 b4dd9df25e4492d8f28cad1d206475cf;346b260813b37e72df7f8221e49c6522 1313 80499419 6fb2d09e83a051199975fc3ea10b7284;284ab50f8e9bb9ec4275bac6f89e44d3 SAMEA4024895 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440626/ERR1440626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440626/ERR1440626_2.fastq.gz 917536 WGS PHESPV1841 RANDOM 57714206;59768340 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 472ffa23d26b2ab2da982a05b6d84292 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440626/ERR1440626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440626/ERR1440626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440626/PHESPV1841.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440626/PHESPV1841.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440626/ERR1440626_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440626/ERR1440626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440626/PHESPV1841.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440626/PHESPV1841.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55426105;57443016 ERS1196005 ERX1511004 GENOMIC 178820198 2016-06-10 PHESPV1841 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440626/PHESPV1841.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440626/PHESPV1841.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440626 PHESPV1841 ERR1440629 PHESPV1844 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440629 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440629 b9574e39b7a2bd5f24c0492595268957;cec20d51ec27d6ef752e68f061a6f22b 1313 78506752 10c45d10f9c9750b84f525bcb8e73f53;14c5efb8f8a5a832d6929b4838faf817 SAMEA4024898 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440629/ERR1440629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440629/ERR1440629_2.fastq.gz 900857 WGS PHESPV1844 RANDOM 56369041;58212714 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c1fd210996ba649e0a699befdc49f33c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440629/ERR1440629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440629/ERR1440629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440629/PHESPV1844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440629/PHESPV1844.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440629/ERR1440629_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440629/ERR1440629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440629/PHESPV1844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440629/PHESPV1844.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54134745;55940839 ERS1196008 ERX1511007 GENOMIC 174808765 2016-06-10 PHESPV1844 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440629/PHESPV1844.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440629/PHESPV1844.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440629 PHESPV1844 ERR1440638 PHESPV1853 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440638 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440638 fb56d4e7ec2ae4d206719f120fa86f71;2fca3af743ce21b54d2f9c3b96c29a05 1313 97867868 992589dc9ce4af87f035c1a9c23390b1;5394cf33c195fc095e58775538a69a99 SAMEA4024907 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440638/ERR1440638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440638/ERR1440638_2.fastq.gz 1108228 WGS PHESPV1853 RANDOM 69895786;72706995 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fefad61fb0a7d7ac581998d11b85d4ba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440638/ERR1440638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440638/ERR1440638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440638/PHESPV1853.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440638/PHESPV1853.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440638/ERR1440638_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440638/ERR1440638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440638/PHESPV1853.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440638/PHESPV1853.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67134066;69905919 ERS1196017 ERX1511016 GENOMIC 217541305 2016-06-10 PHESPV1853 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440638/PHESPV1853.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440638/PHESPV1853.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440638 PHESPV1853 ERR1440646 PHESPV1861 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440646 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440646 0fd14bec76a05baf110615a360c3b5d6;339ae912842bf333efc831c97481b2d2 1313 113263618 0c11b3950cae57a96f062f437332df03;2e1ed4771772a22fb47029468921b261 SAMEA4024915 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440646/ERR1440646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440646/ERR1440646_2.fastq.gz 1286831 WGS PHESPV1861 RANDOM 80890688;83941209 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6da023d38342e8543dcca5fa1fa636ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440646/ERR1440646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440646/ERR1440646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440646/PHESPV1861.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440646/PHESPV1861.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440646/ERR1440646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440646/ERR1440646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440646/PHESPV1861.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440646/PHESPV1861.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77687654;80694392 ERS1196025 ERX1511024 GENOMIC 251283999 2016-06-10 PHESPV1861 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440646/PHESPV1861.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440646/PHESPV1861.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440646 PHESPV1861 ERR1440650 PHESPV1865 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440650 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440650 f69c17f2c10c02c183657dfa322d0773;1bce472dc20bde2d83803b3b56729a7d 1313 121202768 0b14d0e44d770476b1e04fc6802003b3;fd16753a1c459318e4704e0d92f1fe94 SAMEA4024919 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440650/ERR1440650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440650/ERR1440650_2.fastq.gz 1370105 WGS PHESPV1865 RANDOM 86299073;89906308 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a355f6e42bca4906a34bd7022d04bb5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440650/ERR1440650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440650/ERR1440650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440650/PHESPV1865.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440650/PHESPV1865.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440650/ERR1440650_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440650/ERR1440650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440650/PHESPV1865.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440650/PHESPV1865.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82855750;86411108 ERS1196029 ERX1511028 GENOMIC 267925591 2016-06-10 PHESPV1865 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440650/PHESPV1865.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440650/PHESPV1865.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440650 PHESPV1865 ERR1440656 PHESPV1871 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440656 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440656 b93d27fa17e930c4a27b0073c6f299ee;84ab1ce7d78160ca9eab7fe935557b63 1313 105468457 49a5d3e55dd397b1c319d789eaecb8bc;53608a86c6faeadda87f2c076df5f207 SAMEA4024925 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440656/ERR1440656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440656/ERR1440656_2.fastq.gz 1188359 WGS PHESPV1871 RANDOM 75306773;78290611 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 32e84a6abed68e30280b84b64d33cdf7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440656/ERR1440656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440656/ERR1440656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440656/PHESPV1871.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440656/PHESPV1871.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440656/ERR1440656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440656/ERR1440656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440656/PHESPV1871.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440656/PHESPV1871.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72363582;75306402 ERS1196035 ERX1511034 GENOMIC 233615611 2016-06-10 PHESPV1871 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440656/PHESPV1871.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440656/PHESPV1871.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440656 PHESPV1871 ERR1440657 PHESPV1872 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440657 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440657 0d8a5858c46c91c2c7ee981580753d62;61780234cbc92ffd2fc652eb7f477d3f 1313 117983796 dc7fc849f0cf3dc4fed1305d75eec7c4;baba6001104002baf89dc06dc1039749 SAMEA4024926 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440657/ERR1440657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440657/ERR1440657_2.fastq.gz 1330673 WGS PHESPV1872 RANDOM 84196653;87589748 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 705084718839e59a9d6c3b553687fb21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440657/ERR1440657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440657/ERR1440657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440657/PHESPV1872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440657/PHESPV1872.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440657/ERR1440657_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440657/ERR1440657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440657/PHESPV1872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440657/PHESPV1872.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80871133;84217508 ERS1196036 ERX1511035 GENOMIC 261808962 2016-06-10 PHESPV1872 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440657/PHESPV1872.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440657/PHESPV1872.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440657 PHESPV1872 ERR1440665 PHESPV1880 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440665 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440665 4435f9203b1c6db97c18bfb7e37647ce;e498032e2338dec67df47eac2a894ace 1313 127595207 5230da0e20519472fed3f4dd68b7cb82;65051966455ae18949405e27a03102f8 SAMEA4024934 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440665/ERR1440665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440665/ERR1440665_2.fastq.gz 1448537 WGS PHESPV1880 RANDOM 91140641;94874578 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f9637efe3794e0ff23d2aa48160aef7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440665/ERR1440665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440665/ERR1440665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440665/PHESPV1880.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440665/PHESPV1880.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440665/ERR1440665_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440665/ERR1440665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440665/PHESPV1880.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440665/PHESPV1880.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87459883;91137520 ERS1196044 ERX1511043 GENOMIC 284655745 2016-06-10 PHESPV1880 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440665/PHESPV1880.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440665/PHESPV1880.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440665 PHESPV1880 ERR1440676 PHESPV1891 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440676 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440676 d77a9a2cfafbd1f4d12ea48dd9ab0e1c;ef017ff22638ea27b348d9d1446e844c 1313 110076772 506190cc34d5484e124a80d3562b171d;5773f25e3d18ed9239750eb001274437 SAMEA4024945 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440676/ERR1440676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440676/ERR1440676_2.fastq.gz 1170725 WGS PHESPV1891 RANDOM 77407730;78966665 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5e37cf2c18dd54f74b38aedca4c3ac04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440676/ERR1440676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440676/ERR1440676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440676/PHESPV1891.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440676/PHESPV1891.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440676/ERR1440676_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440676/ERR1440676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440676/PHESPV1891.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440676/PHESPV1891.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74393293;75942092 ERS1196055 ERX1511054 GENOMIC 226391228 2016-06-10 PHESPV1891 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440676/PHESPV1891.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440676/PHESPV1891.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440676 PHESPV1891 ERR1440688 PHESPV1903 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440688 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440688 dd28231f7446d73d77892a54f036fb4b;8811ea43d406e9dc81f53ac67c01dcaf 1313 108741089 e0af986505f80fb8ff71645fbc1ad719;b912efcca9466d33ba262cc2af0d694c SAMEA4024957 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440688/ERR1440688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440688/ERR1440688_2.fastq.gz 1191087 WGS PHESPV1903 RANDOM 77746234;77770928 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed7a36e404ec3b88fd79e942e1279491 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440688/ERR1440688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440688/ERR1440688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440688/PHESPV1903.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440688/PHESPV1903.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440688/ERR1440688_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440688/ERR1440688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440688/PHESPV1903.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440688/PHESPV1903.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74668997;74688232 ERS1196067 ERX1511066 GENOMIC 229176121 2016-06-10 PHESPV1903 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440688/PHESPV1903.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440688/PHESPV1903.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440688 PHESPV1903 ERR1440692 PHESPV1907 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440692 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440692 48e0098dd5e9677944e19fe74c5339df;61efb8235da1244de14ffc5ce98946b4 1313 84830462 c56987f79417939e0f16dee9c7d59a9c;b2e55edb67fdbf8a44f351a015369212 SAMEA4024961 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440692/ERR1440692_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440692/ERR1440692_2.fastq.gz 902383 WGS PHESPV1907 RANDOM 60054571;60827640 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6fb8a16ec584a1ae362d37a5ee78f15a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440692/ERR1440692_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440692/ERR1440692_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440692/PHESPV1907.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440692/PHESPV1907.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440692/ERR1440692_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440692/ERR1440692_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440692/PHESPV1907.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440692/PHESPV1907.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57712547;58476442 ERS1196071 ERX1511070 GENOMIC 175027505 2016-06-10 PHESPV1907 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440692/PHESPV1907.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440692/PHESPV1907.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440692 PHESPV1907 ERR1438801 PHESPV0011 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438801 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438801 08aa4ae4e8ec802cfa2dbdc553f218e4;6b5ae6e5d28242e0aa733c3dce86fc2c 1313 108470842 f17eb7aa07787acf450d46f68e6abafe;40668b20c368a082bcd1c6aada1fefec SAMEA4023070 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438801/ERR1438801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438801/ERR1438801_2.fastq.gz 1241947 WGS PHESPV0011 RANDOM 72580507;74701297 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5e9a2ad5974678fb155e6fdac2797ba4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438801/ERR1438801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438801/ERR1438801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438801/PHESPV0011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438801/PHESPV0011.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438801/ERR1438801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438801/ERR1438801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438801/PHESPV0011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438801/PHESPV0011.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76800042;78915916 ERS1194180 ERX1509179 GENOMIC 246325612 2016-06-10 PHESPV0011 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438801/PHESPV0011.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438801/PHESPV0011.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438801 PHESPV0011 ERR1438793 PHESPV0003 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438793 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438793 5d73f6438462c2cceb6a98fd896b46cb;02e9fd00bb35441e075a023da4db362c 1313 79634359 593b8cdb2326f3afd26d3186e02f2f3a;7fbf0c552260574f1f32ed4b90da5c52 SAMEA4023062 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438793/ERR1438793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438793/ERR1438793_2.fastq.gz 910482 WGS PHESPV0003 RANDOM 53063594;54755937 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b44243d5f675bcfdf2bcf5571c53dd73 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438793/ERR1438793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438793/ERR1438793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438793/PHESPV0003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438793/PHESPV0003.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438793/ERR1438793_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438793/ERR1438793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438793/PHESPV0003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438793/PHESPV0003.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56276154;57956148 ERS1194172 ERX1509171 GENOMIC 180523767 2016-06-10 PHESPV0003 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438793/PHESPV0003.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438793/PHESPV0003.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438793 PHESPV0003 ERR1438820 PHESPV0030 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438820 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438820 4a82e1a051ec5fc0a51c1d23a70b1678;1af93a6624017bc11e932b0daa1b8782 1313 73289317 809e563fa33c0b2184abd3162317a99f;169a1492072730be6da5d1c1a37de3de SAMEA4023089 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438820/ERR1438820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438820/ERR1438820_2.fastq.gz 824025 WGS PHESPV0030 RANDOM 48638157;50731802 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0dc0eab6b1fee9b21fbff7cc1f38ff52 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438820/ERR1438820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438820/ERR1438820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438820/PHESPV0030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438820/PHESPV0030.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438820/ERR1438820_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438820/ERR1438820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438820/PHESPV0030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438820/PHESPV0030.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51567150;53627668 ERS1194199 ERX1509198 GENOMIC 163136199 2016-06-10 PHESPV0030 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438820/PHESPV0030.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438820/PHESPV0030.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438820 PHESPV0030 ERR1438813 PHESPV0023 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438813 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438813 2404aff1a78224c3ed561da604175ebf;228c0753606de6fec54c825ee9047daf 1313 143687775 f09516339850ac0e1503cde97eb25f9b;19db20c5cb2c60f5de2d26310f2cb887 SAMEA4023082 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438813/ERR1438813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438813/ERR1438813_2.fastq.gz 1660737 WGS PHESPV0023 RANDOM 96119280;98528820 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 867f7507c91eb53cd18fb1c828b17134 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438813/ERR1438813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438813/ERR1438813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438813/PHESPV0023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438813/PHESPV0023.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438813/ERR1438813_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438813/ERR1438813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438813/PHESPV0023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438813/PHESPV0023.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101550024;103955543 ERS1194192 ERX1509191 GENOMIC 329444439 2016-06-10 PHESPV0023 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438813/PHESPV0023.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438813/PHESPV0023.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438813 PHESPV0023 ERR1438821 PHESPV0031 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438821 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438821 e17edba0bb372278e3edfb0547f90d35;d9c43dacc7c4106718fe64898f35c3f3 1313 85760191 b8775727489554ec69bf3ad68000c4ee;522d02e281cc9beb52546c146a80c6a1 SAMEA4023090 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438821/ERR1438821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438821/ERR1438821_2.fastq.gz 969218 WGS PHESPV0031 RANDOM 57575139;58820101 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ffdf6c262c49e031d065af5e5d966f6f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438821/ERR1438821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438821/ERR1438821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438821/PHESPV0031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438821/PHESPV0031.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438821/ERR1438821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438821/ERR1438821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438821/PHESPV0031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438821/PHESPV0031.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60941004;62167255 ERS1194200 ERX1509199 GENOMIC 192072370 2016-06-10 PHESPV0031 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438821/PHESPV0031.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438821/PHESPV0031.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438821 PHESPV0031 ERR1438825 PHESPV0035 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438825 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438825 84b1db22579165a13879d22d271e927e;d7e27208d5be83f5443b35dcdab706bd 1313 157276846 80c62fc39db0e498434b56069dd52523;db7640ad0739c794f3f543cffc6e6815 SAMEA4023094 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438825/ERR1438825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438825/ERR1438825_2.fastq.gz 1769197 WGS PHESPV0035 RANDOM 105002379;108330703 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 94ed721897cfedf76c9acdb110e2e6f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438825/ERR1438825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438825/ERR1438825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438825/PHESPV0035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438825/PHESPV0035.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438825/ERR1438825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438825/ERR1438825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438825/PHESPV0035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438825/PHESPV0035.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110736454;114030224 ERS1194204 ERX1509203 GENOMIC 350418266 2016-06-10 PHESPV0035 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438825/PHESPV0035.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438825/PHESPV0035.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438825 PHESPV0035 ERR1438823 PHESPV0033 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438823 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438823 588383228890d3aaca1a8a1062dbd8e7;1d37ea91b2d985fc9657406beca60ad7 1313 67193279 fa0179dae8f0a4173bf0467445cb33cd;a24e2a50d941a82300991ad280d4e802 SAMEA4023092 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438823/ERR1438823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438823/ERR1438823_2.fastq.gz 758793 WGS PHESPV0033 RANDOM 45267643;46027108 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b72558e7d420400c679fe5ee2c9a4499 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438823/ERR1438823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438823/ERR1438823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438823/PHESPV0033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438823/PHESPV0033.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438823/ERR1438823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438823/ERR1438823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438823/PHESPV0033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438823/PHESPV0033.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 47979348;48732662 ERS1194202 ERX1509201 GENOMIC 150463406 2016-06-10 PHESPV0033 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438823/PHESPV0033.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438823/PHESPV0033.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438823 PHESPV0033 ERR1438824 PHESPV0034 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438824 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438824 9305f3c3c072c1d47e609b644a410e2f;2581e2e2c553dd1e3261acdd808f628a 1313 149349354 e89f9619ce9faf784c1c77f736181e3f;b9fc11f6f477ccfcf6237039b0967f67 SAMEA4023093 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438824/ERR1438824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438824/ERR1438824_2.fastq.gz 1698106 WGS PHESPV0034 RANDOM 100421912;102560750 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54537c9c8d9a9d117253c0b59ee43e7b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438824/ERR1438824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438824/ERR1438824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438824/PHESPV0034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438824/PHESPV0034.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438824/ERR1438824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438824/ERR1438824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438824/PHESPV0034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438824/PHESPV0034.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105992961;108121795 ERS1194203 ERX1509202 GENOMIC 336838039 2016-06-10 PHESPV0034 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438824/PHESPV0034.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438824/PHESPV0034.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438824 PHESPV0034 ERR1438822 PHESPV0032 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438822 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438822 88ea0aac80ff2fc11548c1b92fcd7ad8;b2568da4038993db105ea932138f360b 1313 80193433 89f75d7dcd789950f482658f64dea1f9;64599131c28376f33be3bff4be311906 SAMEA4023091 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438822/ERR1438822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438822/ERR1438822_2.fastq.gz 909753 WGS PHESPV0032 RANDOM 53756172;55162996 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b143f74f1e82a436c589aa6c91449b68 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438822/ERR1438822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438822/ERR1438822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438822/PHESPV0032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438822/PHESPV0032.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438822/ERR1438822_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438822/ERR1438822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438822/PHESPV0032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438822/PHESPV0032.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56959067;58349084 ERS1194201 ERX1509200 GENOMIC 180308612 2016-06-10 PHESPV0032 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438822/PHESPV0032.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438822/PHESPV0032.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438822 PHESPV0032 ERR1438827 PHESPV0037 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438827 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438827 8cfd7b096af739e2fedf2fdc0a42349c;4bb6ebb384c819257ba584773ba9ed8b 1313 92394279 70aaa385a8ca10754f7c35fd19e5edb3;7b8d19ad690a6bcff34ed3aed55532ec SAMEA4023096 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438827/ERR1438827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438827/ERR1438827_2.fastq.gz 1042282 WGS PHESPV0037 RANDOM 61807195;63512565 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fb27ecf8cbdbc73ee92159a5a8d9f847 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438827/ERR1438827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438827/ERR1438827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438827/PHESPV0037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438827/PHESPV0037.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438827/ERR1438827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438827/ERR1438827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438827/PHESPV0037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438827/PHESPV0037.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65417011;67104063 ERS1194206 ERX1509205 GENOMIC 206516701 2016-06-10 PHESPV0037 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438827/PHESPV0037.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438827/PHESPV0037.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438827 PHESPV0037 ERR1438828 PHESPV0038 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438828 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438828 1f5547cd103ce5865c46c1f411b3ecae;985862b119e1c0fa96923c43fe146f76 1313 125441141 9b2c0cacb9476c2007df6de5333aed08;9261252434a452a275b56efa69892915 SAMEA4023097 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438828/ERR1438828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438828/ERR1438828_2.fastq.gz 1425911 WGS PHESPV0038 RANDOM 84301991;86079773 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 572f4749fa8f87d1772d13e445b2f909 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438828/ERR1438828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438828/ERR1438828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438828/PHESPV0038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438828/PHESPV0038.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438828/ERR1438828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438828/ERR1438828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438828/PHESPV0038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438828/PHESPV0038.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89068630;90835026 ERS1194207 ERX1509206 GENOMIC 282719870 2016-06-10 PHESPV0038 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438828/PHESPV0038.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438828/PHESPV0038.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438828 PHESPV0038 ERR1438829 PHESPV0039 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438829 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438829 575b49d81ce99005c2bd1f941b546d98;e427061897a76f0485bca682a2948959 1313 71863600 981f6303b00a4ba51d1d873816f4681a;2bd43855448beb00c657d6132bf70599 SAMEA4023098 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438829/ERR1438829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438829/ERR1438829_2.fastq.gz 817593 WGS PHESPV0039 RANDOM 48242311;49240072 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cdfd0cac397284a87e440e5d62585f0f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438829/ERR1438829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438829/ERR1438829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438829/PHESPV0039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438829/PHESPV0039.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438829/ERR1438829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438829/ERR1438829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438829/PHESPV0039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438829/PHESPV0039.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51161605;52156195 ERS1194208 ERX1509207 GENOMIC 162121825 2016-06-10 PHESPV0039 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438829/PHESPV0039.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438829/PHESPV0039.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438829 PHESPV0039 ERR1438830 PHESPV0040 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438830 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438830 d703178a068b38e017b7984cb1a6e515;902d6a23f1430c8227e336073eae0494 1313 130250511 e1b6728befd8fda588b41dd228367181;1fe6891e09e485edc0fc60fe50139639 SAMEA4023099 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438830/ERR1438830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438830/ERR1438830_2.fastq.gz 1463714 WGS PHESPV0040 RANDOM 86351890;89695201 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30833707e6badea8b698197d24de3efb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438830/ERR1438830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438830/ERR1438830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438830/PHESPV0040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438830/PHESPV0040.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438830/ERR1438830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438830/ERR1438830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438830/PHESPV0040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438830/PHESPV0040.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91192427;94499875 ERS1194209 ERX1509208 GENOMIC 289771991 2016-06-10 PHESPV0040 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438830/PHESPV0040.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438830/PHESPV0040.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438830 PHESPV0040 ERR1438831 PHESPV0041 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438831 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438831 96d7e53c64ae4fd11a89c2ee5215fce6;9b03dd500bc0406d1d8719c8cb3081d2 1313 125385037 6f1836d8de5615d1629beff6310666dc;e2976da5e418b6f98cb4fd8526338ec4 SAMEA4023100 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438831/ERR1438831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438831/ERR1438831_2.fastq.gz 1427175 WGS PHESPV0041 RANDOM 84205047;85645353 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 970ea0a4d20371c0c0d0fa8035da98e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438831/ERR1438831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438831/ERR1438831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438831/PHESPV0041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438831/PHESPV0041.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438831/ERR1438831_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438831/ERR1438831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438831/PHESPV0041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438831/PHESPV0041.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88971365;90411845 ERS1194210 ERX1509209 GENOMIC 283019252 2016-06-10 PHESPV0041 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438831/PHESPV0041.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438831/PHESPV0041.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438831 PHESPV0041 ERR1438832 PHESPV0042 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438832 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438832 0bc99e0c84e482c5163a199e7ba1943b;eb79d141e932a0f40bc514ac6dbcbebf 1313 87474612 807839a52c1c7694182ea9da5a4aed24;9fe5594a36ad60ceb0a092af6f9a3a4c SAMEA4023101 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438832/ERR1438832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438832/ERR1438832_2.fastq.gz 994285 WGS PHESPV0042 RANDOM 58500399;60270620 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f2ccf755cb7b24b1f8e4924de8be325f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438832/ERR1438832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438832/ERR1438832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438832/PHESPV0042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438832/PHESPV0042.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438832/ERR1438832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438832/ERR1438832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438832/PHESPV0042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438832/PHESPV0042.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61974436;63728661 ERS1194211 ERX1509210 GENOMIC 197150646 2016-06-10 PHESPV0042 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438832/PHESPV0042.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438832/PHESPV0042.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438832 PHESPV0042 ERR1438833 PHESPV0043 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438833 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438833 ef13d1a7100d5903f21f1e21b03f12df;4405fa04b338913fa6c0e507caf725c9 1313 93565714 ff7d6553edc5fd7d07dee05c5a6923e8;cab8a1bca7313a8e5909d10d71f1c2a8 SAMEA4023102 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438833/ERR1438833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438833/ERR1438833_2.fastq.gz 1059684 WGS PHESPV0043 RANDOM 62866402;64268119 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ce082b47f8223f5da5b37d115a7ec7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438833/ERR1438833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438833/ERR1438833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438833/PHESPV0043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438833/PHESPV0043.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438833/ERR1438833_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438833/ERR1438833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438833/PHESPV0043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438833/PHESPV0043.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66535726;67928038 ERS1194212 ERX1509211 GENOMIC 210103853 2016-06-10 PHESPV0043 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438833/PHESPV0043.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438833/PHESPV0043.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438833 PHESPV0043 ERR1438834 PHESPV0044 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438834 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438834 a795f1d7b121d0afd85c91c6ac8e2759;0526c6a67d68d6ad2f99c802e8c447b9 1313 205142889 d81b9213485ee36ff59b86c0275904c8;a325b32e20e55e01c1064397cf728c14 SAMEA4023103 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438834/ERR1438834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438834/ERR1438834_2.fastq.gz 2299850 WGS PHESPV0044 RANDOM 134803916;137862034 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f4d965a80d704ee11d6ad278da4ce82a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438834/ERR1438834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438834/ERR1438834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438834/PHESPV0044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438834/PHESPV0044.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438834/ERR1438834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438834/ERR1438834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438834/PHESPV0044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438834/PHESPV0044.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141878645;144905676 ERS1194213 ERX1509212 GENOMIC 454381983 2016-06-10 PHESPV0044 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438834/PHESPV0044.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438834/PHESPV0044.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438834 PHESPV0044 ERR1438835 PHESPV0045 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438835 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438835 ff79758bbe63d642609317d0d176bb8e;47f925d978044c82ae0c87cf5cc482fe 1313 122515170 88213072b936582f9f033eb30bef212f;bbe28f4dd7da35533aafdf17990ad616 SAMEA4023104 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438835/ERR1438835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438835/ERR1438835_2.fastq.gz 1383398 WGS PHESPV0045 RANDOM 81338562;84470575 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2913870100f0487027e3971e5b96cca5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438835/ERR1438835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438835/ERR1438835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438835/PHESPV0045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438835/PHESPV0045.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438835/ERR1438835_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438835/ERR1438835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438835/PHESPV0045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438835/PHESPV0045.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85987501;89082379 ERS1194214 ERX1509213 GENOMIC 273973576 2016-06-10 PHESPV0045 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438835/PHESPV0045.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438835/PHESPV0045.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438835 PHESPV0045 ERR1438840 PHESPV0050 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438840 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438840 8f1ac72c8b51eab091b757bf82664ff9;a3fc8e48499b2a38e402bf86ef3752cc 1313 191176285 8583e84820635295661b70dca80705a9;780e9d9d7e5522b4f3b9d612db7d282b SAMEA4023109 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438840/ERR1438840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438840/ERR1438840_2.fastq.gz 2183323 WGS PHESPV0050 RANDOM 128600809;130439614 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a415d69eba9b6922ea995035b84e18f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438840/ERR1438840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438840/ERR1438840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438840/PHESPV0050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438840/PHESPV0050.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438840/ERR1438840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438840/ERR1438840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438840/PHESPV0050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438840/PHESPV0050.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135493156;137325749 ERS1194219 ERX1509218 GENOMIC 432898795 2016-06-10 PHESPV0050 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438840/PHESPV0050.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438840/PHESPV0050.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438840 PHESPV0050 ERR1438842 PHESPV0052 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438842 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438842 550a04edecc75092d4fb97f10f91dff0;e2bb57c205a776f39c9eea64be157151 1313 93252058 2289c4910aa86d88dc951401cffb6aeb;37cd2ad652f04d10c20ba6f6ecd1cb78 SAMEA4023111 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438842/ERR1438842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438842/ERR1438842_2.fastq.gz 1047768 WGS PHESPV0052 RANDOM 61854637;64543584 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1b5937872cb0708486af5a9fdcbe2fcf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438842/ERR1438842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438842/ERR1438842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438842/PHESPV0052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438842/PHESPV0052.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438842/ERR1438842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438842/ERR1438842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438842/PHESPV0052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438842/PHESPV0052.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65505091;68162324 ERS1194221 ERX1509220 GENOMIC 207429155 2016-06-10 PHESPV0052 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438842/PHESPV0052.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438842/PHESPV0052.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438842 PHESPV0052 ERR1438846 PHESPV0056 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438846 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438846 727e34bd68c75a1a3bd77df5bd39c348;a55289d188787c532b41331ca7384d15 1313 89187210 8102a67ceb99f36dcf8ff28bfcd29daa;9e7f0239b1c1f94ef96295cc900f6c70 SAMEA4023115 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438846/ERR1438846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438846/ERR1438846_2.fastq.gz 995100 WGS PHESPV0056 RANDOM 58453269;62024760 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cb3f258eb9d73b52179948d17789da33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438846/ERR1438846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438846/ERR1438846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438846/PHESPV0056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438846/PHESPV0056.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438846/ERR1438846_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438846/ERR1438846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438846/PHESPV0056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438846/PHESPV0056.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61936313;65450419 ERS1194225 ERX1509224 GENOMIC 196723767 2016-06-10 PHESPV0056 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438846/PHESPV0056.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438846/PHESPV0056.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438846 PHESPV0056 ERR1438826 PHESPV0036 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438826 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438826 419f13f2672b12e2f082ebc76015f5af;1de4a89210a130207b941575280c4c72 1313 168490766 57ff4c70e75d102dbf9aacd75ef67279;22290cf94e3e81cdb3a56ed509bf9cf8 SAMEA4023095 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438826/ERR1438826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438826/ERR1438826_2.fastq.gz 1924316 WGS PHESPV0036 RANDOM 113411413;115354061 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 415b9960c8e1c6639a2e0b4df810b52c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438826/ERR1438826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438826/ERR1438826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438826/PHESPV0036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438826/PHESPV0036.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438826/ERR1438826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438826/ERR1438826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438826/PHESPV0036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438826/PHESPV0036.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119599707;121526948 ERS1194205 ERX1509204 GENOMIC 381711834 2016-06-10 PHESPV0036 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438826/PHESPV0036.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438826/PHESPV0036.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438826 PHESPV0036 ERR1438848 PHESPV0058 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438848 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438848 58dfa17eab9255c469db66b75a2fc5f4;2dec9bebadec1439a849d2305968ce8a 1313 120200775 18629149b57b0f55bc2965b75bc6e9fb;094049f81ec610792dba902c89255081 SAMEA4023117 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438848/ERR1438848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438848/ERR1438848_2.fastq.gz 1346909 WGS PHESPV0058 RANDOM 79889575;82970377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fa0baa695d9c8e61813d098350887af8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438848/ERR1438848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438848/ERR1438848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438848/PHESPV0058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438848/PHESPV0058.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438848/ERR1438848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438848/ERR1438848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438848/PHESPV0058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438848/PHESPV0058.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84426628;87468434 ERS1194227 ERX1509226 GENOMIC 266635378 2016-06-10 PHESPV0058 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438848/PHESPV0058.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438848/PHESPV0058.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438848 PHESPV0058 ERR1438850 PHESPV0060 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438850 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438850 550deb2d3ec06042ddcb6bb472c7926b;dfe77a054fb90966ada52e5c825b5b5c 1313 134042330 29678078d29cf914ea16e674d58d69cd;9fd5b5686efae2956d2bc26a749821ee SAMEA4023119 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438850/ERR1438850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438850/ERR1438850_2.fastq.gz 1511063 WGS PHESPV0060 RANDOM 88674092;92126311 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6b020b7de37e06e35cf7e9a546b77ab ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438850/ERR1438850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438850/ERR1438850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438850/PHESPV0060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438850/PHESPV0060.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438850/ERR1438850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438850/ERR1438850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438850/PHESPV0060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438850/PHESPV0060.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93731874;97146867 ERS1194229 ERX1509228 GENOMIC 299139954 2016-06-10 PHESPV0060 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438850/PHESPV0060.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438850/PHESPV0060.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438850 PHESPV0060 ERR1438852 PHESPV0062 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438852 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438852 8505e26fe8f2a8bce7ec4efc20366cdf;fdb535981770c46d1abc170883c8d5bc 1313 62634603 801bf811d973770bbe0262ca7622e861;ca4cec6e1c3423f51824a0209e7087aa SAMEA4023121 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438852/ERR1438852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438852/ERR1438852_2.fastq.gz 705155 WGS PHESPV0062 RANDOM 41457489;43409066 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aa673a014109e364e39c44d5d1c8da9f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438852/ERR1438852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438852/ERR1438852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438852/PHESPV0062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438852/PHESPV0062.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438852/ERR1438852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438852/ERR1438852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438852/PHESPV0062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438852/PHESPV0062.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 44021935;45936461 ERS1194231 ERX1509230 GENOMIC 139604423 2016-06-10 PHESPV0062 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438852/PHESPV0062.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438852/PHESPV0062.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438852 PHESPV0062 ERR1438855 PHESPV0065 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438855 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438855 fe6ed9f97fffc5a1214e489979ebde56;25fd66dbe6f7d7289b963c21f49e3471 1313 95753058 4f9f277d181dfa6e5f07ce714ead456a;1039df6423e5df24d182e00bd6c5152b SAMEA4023124 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438855/ERR1438855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438855/ERR1438855_2.fastq.gz 1118721 WGS PHESPV0065 RANDOM 63885189;66838042 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 31c456b357aabb2817861ba4cd5a4d9f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438855/ERR1438855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438855/ERR1438855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438855/PHESPV0065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438855/PHESPV0065.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438855/ERR1438855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438855/ERR1438855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438855/PHESPV0065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438855/PHESPV0065.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67719523;70644408 ERS1194234 ERX1509233 GENOMIC 222422274 2016-06-10 PHESPV0065 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438855/PHESPV0065.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438855/PHESPV0065.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438855 PHESPV0065 ERR1438858 PHESPV0068 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438858 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438858 d949ec8e114eb171131903565c84e2ff;58fdc3dd5c0643cba6a3218741b46471 1313 192130890 e65b677ef5387f568cd92fe9a364265e;0148e1121c767bd2cbd1dc76de960a04 SAMEA4023127 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438858/ERR1438858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438858/ERR1438858_2.fastq.gz 2269411 WGS PHESPV0068 RANDOM 128188207;134118171 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fa1b2e9fdef6f47627180a10f639063e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438858/ERR1438858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438858/ERR1438858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438858/PHESPV0068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438858/PHESPV0068.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438858/ERR1438858_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438858/ERR1438858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438858/PHESPV0068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438858/PHESPV0068.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135298986;141207894 ERS1194237 ERX1509236 GENOMIC 451288559 2016-06-10 PHESPV0068 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438858/PHESPV0068.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438858/PHESPV0068.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438858 PHESPV0068 ERR1438863 PHESPV0073 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438863 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438863 7b0a4e1d4e0d80ce1cfb6a059e2b098c;afb464a9cf5b0612a94e7fb4c734fcd1 1313 68961739 21607b4f7fb6c75d1b8840884859c51b;2067cb61afabd76bfbd3ea36a5e1aba3 SAMEA4023132 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438863/ERR1438863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438863/ERR1438863_2.fastq.gz 776841 WGS PHESPV0073 RANDOM 45959376;47532393 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 317721ec1da1af0ebf665293588ff76b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438863/ERR1438863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438863/ERR1438863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438863/PHESPV0073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438863/PHESPV0073.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438863/ERR1438863_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438863/ERR1438863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438863/PHESPV0073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438863/PHESPV0073.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48753741;50307155 ERS1194242 ERX1509241 GENOMIC 153900109 2016-06-10 PHESPV0073 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438863/PHESPV0073.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438863/PHESPV0073.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438863 PHESPV0073 ERR1438864 PHESPV0074 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438864 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438864 e3406a6b8b1a0b62fd16c90374e29c4c;85387c975406960ca015812a40cc4502 1313 116752027 ca480a2cb5177f760bc5d8c530b25bbf;21f7b42ec784df3a50d3cfdaeac431db SAMEA4023133 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438864/ERR1438864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438864/ERR1438864_2.fastq.gz 1337859 WGS PHESPV0074 RANDOM 78807624;79752311 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b7f0babf9e8b4bd0b5813a894a8916e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438864/ERR1438864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438864/ERR1438864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438864/PHESPV0074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438864/PHESPV0074.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438864/ERR1438864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438864/ERR1438864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438864/PHESPV0074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438864/PHESPV0074.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83320465;84273326 ERS1194243 ERX1509242 GENOMIC 265483575 2016-06-10 PHESPV0074 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438864/PHESPV0074.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438864/PHESPV0074.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438864 PHESPV0074 ERR1438880 PHESPV0090 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438880 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438880 eaf9d3469d17392012f3fcaf350c33b0;2c84f5ae9f9cb61593922a67e88d5c53 1313 145325270 d0e453d3ad3f3173fd23754ad25ef4a2;29a9c2c28218b41b73a04e20ff6601c9 SAMEA4023149 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438880/ERR1438880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438880/ERR1438880_2.fastq.gz 1658627 WGS PHESPV0090 RANDOM 97997792;99612438 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4a24536a1550eb9b6c13dae828f67b31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438880/ERR1438880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438880/ERR1438880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438880/PHESPV0090.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438880/PHESPV0090.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438880/ERR1438880_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438880/ERR1438880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438880/PHESPV0090.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438880/PHESPV0090.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103512960;105131960 ERS1194259 ERX1509258 GENOMIC 329046920 2016-06-10 PHESPV0090 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438880/PHESPV0090.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438880/PHESPV0090.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438880 PHESPV0090 ERR1438865 PHESPV0075 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438865 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438865 730a59dd01b22ef47a4b68d8600f08c1;3da8d55383d7caed691c360b1843267a 1313 193752104 5786bd36bb03afc214e26df3ae2ea9b4;5bc672c17c97466152296451f6bea8a6 SAMEA4023134 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438865/ERR1438865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438865/ERR1438865_2.fastq.gz 2133613 WGS PHESPV0075 RANDOM 126831657;134212370 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 15d62a04b23860dd1564026456cffb36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438865/ERR1438865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438865/ERR1438865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438865/PHESPV0075.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438865/PHESPV0075.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438865/ERR1438865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438865/ERR1438865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438865/PHESPV0075.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438865/PHESPV0075.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133592118;140927715 ERS1194244 ERX1509243 GENOMIC 422616337 2016-06-10 PHESPV0075 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438865/PHESPV0075.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438865/PHESPV0075.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438865 PHESPV0075 ERR1438883 PHESPV0093 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438883 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438883 6b96d0174d20a4237f38750f31957817;be08b857ffaa42fbe0d4df47d24d6bc1 1313 99906378 ba1371629601950e358d366c93320ecf;ab86783d19a97a0e9d6267a4da27055e SAMEA4023152 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438883/ERR1438883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438883/ERR1438883_2.fastq.gz 1115976 WGS PHESPV0093 RANDOM 65428019;69042139 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 815d132a4a3cfc8e9d066fa3b259fd42 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438883/ERR1438883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438883/ERR1438883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438883/PHESPV0093.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438883/PHESPV0093.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438883/ERR1438883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438883/ERR1438883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438883/PHESPV0093.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438883/PHESPV0093.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69313932;72871493 ERS1194262 ERX1509261 GENOMIC 220629364 2016-06-10 PHESPV0093 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438883/PHESPV0093.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438883/PHESPV0093.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438883 PHESPV0093 ERR1438884 PHESPV0094 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438884 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438884 4dab3a6758a16a35590c269fdcfee036;0dcd715276d769fae294ec2ba665f342 1313 57397975 3b27c3857c46f06ed884ea57903547d1;9d6e001bb3a489bedc2ea6b545d448f6 SAMEA4023153 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438884/ERR1438884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438884/ERR1438884_2.fastq.gz 642894 WGS PHESPV0094 RANDOM 37983818;39580268 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bba1b99595a283712b1190d38820c1a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438884/ERR1438884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438884/ERR1438884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438884/PHESPV0094.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438884/PHESPV0094.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438884/ERR1438884_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438884/ERR1438884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438884/PHESPV0094.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438884/PHESPV0094.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 40337418;41910098 ERS1194263 ERX1509262 GENOMIC 127229574 2016-06-10 PHESPV0094 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438884/PHESPV0094.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438884/PHESPV0094.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438884 PHESPV0094 ERR1438885 PHESPV0095 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438885 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438885 61bc423d370b68f7df212a086f7810b0;2853b4ae5e2ce74a29782127a34c9aa7 1313 155064576 96c2172e8c8d5c40d641a240f7742292;4b7f5eca9373bfc4a4001add9ac8e828 SAMEA4023154 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438885/ERR1438885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438885/ERR1438885_2.fastq.gz 1770956 WGS PHESPV0095 RANDOM 104286733;105788584 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 49cff8124e3ed72faeee8627822813c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438885/ERR1438885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438885/ERR1438885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438885/PHESPV0095.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438885/PHESPV0095.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438885/ERR1438885_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438885/ERR1438885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438885/PHESPV0095.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438885/PHESPV0095.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110041951;111531773 ERS1194264 ERX1509263 GENOMIC 351172294 2016-06-10 PHESPV0095 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438885/PHESPV0095.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438885/PHESPV0095.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438885 PHESPV0095 ERR1438886 PHESPV0096 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438886 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438886 e67c456cbbdbbbe46ab521b949b75021;d9c9f252337992fd4d2e43526008ec86 1313 52588864 5184b3070777aa5f1e1f1130da6d777c;7bedb35031c95c2ef284fe1c9d679083 SAMEA4023155 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438886/ERR1438886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438886/ERR1438886_2.fastq.gz 588927 WGS PHESPV0096 RANDOM 35256620;35893199 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 671683d8fcea6caf6ea4df7b7329c5cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438886/ERR1438886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438886/ERR1438886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438886/PHESPV0096.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438886/PHESPV0096.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438886/ERR1438886_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438886/ERR1438886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438886/PHESPV0096.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438886/PHESPV0096.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 37426552;38060230 ERS1194265 ERX1509264 GENOMIC 116721903 2016-06-10 PHESPV0096 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438886/PHESPV0096.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438886/PHESPV0096.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438886 PHESPV0096 ERR1438889 PHESPV0099 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438889 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438889 b58197507150553d14203a3626af43f6;f79858ae01b212b5ffe91e02ddf640f0 1313 82310597 71dd2eb0583db8a39bd3722384bb906f;e0e38164d902735f89d872e8237b881c SAMEA4023158 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438889/ERR1438889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438889/ERR1438889_2.fastq.gz 937771 WGS PHESPV0099 RANDOM 55492911;56480145 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dbb93e03881250d64ca31a7c0a7e05dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438889/ERR1438889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438889/ERR1438889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438889/PHESPV0099.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438889/PHESPV0099.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438889/ERR1438889_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438889/ERR1438889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438889/PHESPV0099.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438889/PHESPV0099.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58793985;59779979 ERS1194268 ERX1509267 GENOMIC 185988338 2016-06-10 PHESPV0099 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438889/PHESPV0099.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438889/PHESPV0099.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438889 PHESPV0099 ERR1438893 PHESPV0103 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438893 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438893 874e0895e166812e25f84fa094fb3198;468fb4a67a28386a1b40c04212569554 1313 120331658 7cff7e040ddf72288c228c09ee4f66c8;53220a194f851c49f911214103adc2de SAMEA4023162 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438893/ERR1438893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438893/ERR1438893_2.fastq.gz 1400358 WGS PHESPV0103 RANDOM 80757482;83104391 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 367c5df82cac92debb49222331eb23a5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438893/ERR1438893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438893/ERR1438893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438893/PHESPV0103.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438893/PHESPV0103.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438893/ERR1438893_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438893/ERR1438893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438893/PHESPV0103.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438893/PHESPV0103.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85420918;87762996 ERS1194272 ERX1509271 GENOMIC 277957988 2016-06-10 PHESPV0103 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438893/PHESPV0103.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438893/PHESPV0103.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438893 PHESPV0103 ERR1438903 PHESPV0113 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438903 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438903 ecef498c4f76d97382ea960733ff9e72;13bcdc2d5483a9c58c835ec10a60214f 1313 80134865 51c12ec65bb9d4363821ced0564eb769;399f9eceac24ef7bad285e66fde9e692 SAMEA4023172 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438903/ERR1438903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438903/ERR1438903_2.fastq.gz 875081 WGS PHESPV0113 RANDOM 52193206;55738969 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bd382b6d6a12f4504aca6d9f0ba85d78 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438903/ERR1438903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438903/ERR1438903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438903/PHESPV0113.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438903/PHESPV0113.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438903/ERR1438903_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438903/ERR1438903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438903/PHESPV0113.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438903/PHESPV0113.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55306191;58818525 ERS1194282 ERX1509281 GENOMIC 172938680 2016-06-10 PHESPV0113 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438903/PHESPV0113.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438903/PHESPV0113.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438903 PHESPV0113 ERR1438905 PHESPV0115 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438905 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438905 67313d41f0d3ec1777cdcb06f6ba9ea5;a3f815302848bf26f40f721dad36ad7c 1313 100139824 984f47debe0248698b25db1cf1ecdcb4;93f9b9c24708faefc39e535898f2ee6d SAMEA4023174 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438905/ERR1438905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438905/ERR1438905_2.fastq.gz 1140071 WGS PHESPV0115 RANDOM 67574975;68609999 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7df42573c465df3e37d17a8fb5956698 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438905/ERR1438905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438905/ERR1438905_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438905/PHESPV0115.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438905/PHESPV0115.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438905/ERR1438905_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438905/ERR1438905_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438905/PHESPV0115.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438905/PHESPV0115.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71484696;72515244 ERS1194284 ERX1509283 GENOMIC 226159044 2016-06-10 PHESPV0115 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438905/PHESPV0115.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438905/PHESPV0115.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438905 PHESPV0115 ERR1438915 PHESPV0125 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438915 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438915 c3ac76b7a66f3024e5287dd8b895dba7;d8fd9cad341ed35349c600fc05ce0006 1313 72939740 5fe5590c2c1bbfcac4f307a9e1639e1d;e9c0ced48048e05cb358ed420857c2d3 SAMEA4023184 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438915/ERR1438915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438915/ERR1438915_2.fastq.gz 823476 WGS PHESPV0125 RANDOM 48729946;49854811 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 93afdb25091ac83b3f19202c0b66f498 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438915/ERR1438915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438915/ERR1438915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438915/PHESPV0125.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438915/PHESPV0125.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438915/ERR1438915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438915/ERR1438915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438915/PHESPV0125.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438915/PHESPV0125.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51642480;52756239 ERS1194294 ERX1509293 GENOMIC 163105270 2016-06-10 PHESPV0125 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438915/PHESPV0125.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438915/PHESPV0125.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438915 PHESPV0125 ERR1438921 PHESPV0131 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438921 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438921 bbed532345b56ec3f857d8abb7e3bc23;7ddb513f80fddd3f2899f8381faa8187 1313 84336239 6fe1b6a4bf308e5f0594da9ba1ce3220;92a647b92ab0c048ecd4d6f785c04cc5 SAMEA4023190 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438921/ERR1438921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438921/ERR1438921_2.fastq.gz 959695 WGS PHESPV0131 RANDOM 56849048;57859599 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30c83b5e34bb7ddd524dcbfabf29ebad ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438921/ERR1438921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438921/ERR1438921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438921/PHESPV0131.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438921/PHESPV0131.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438921/ERR1438921_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438921/ERR1438921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438921/PHESPV0131.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438921/PHESPV0131.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60218514;61224202 ERS1194300 ERX1509299 GENOMIC 190320916 2016-06-10 PHESPV0131 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438921/PHESPV0131.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438921/PHESPV0131.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438921 PHESPV0131 ERR1438924 PHESPV0134 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438924 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438924 04cf7c37a7fc53d4c4ed2cd789ae302e;b8e599e6a0af7f8082d6af3bdd6b337f 1313 59844012 c1c533e0ffaaa71f39b4a8400c14f7c3;9e5725a4bda35eb42c86cb0c0c3a591b SAMEA4023193 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438924/ERR1438924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438924/ERR1438924_2.fastq.gz 671379 WGS PHESPV0134 RANDOM 40122659;40835549 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d1113f5ec5695951c74b95f79d08f0ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438924/ERR1438924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438924/ERR1438924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438924/PHESPV0134.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438924/PHESPV0134.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438924/ERR1438924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438924/ERR1438924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438924/PHESPV0134.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438924/PHESPV0134.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 42574143;43282531 ERS1194303 ERX1509302 GENOMIC 132996941 2016-06-10 PHESPV0134 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438924/PHESPV0134.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438924/PHESPV0134.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438924 PHESPV0134 ERR1438926 PHESPV0136 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438926 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438926 16627a5cf97a4c6b7e1c1ed23b802bfa;f05b2321c6f90544f477a5149c89c202 1313 101760505 149f8c6c72c5c80f94987a14ea166217;009447abef87bcbc41cc39d9383320f5 SAMEA4023195 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438926/ERR1438926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438926/ERR1438926_2.fastq.gz 1152065 WGS PHESPV0136 RANDOM 67894853;70249297 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline efce19e7a13760eca38f10a20cbf9084 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438926/ERR1438926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438926/ERR1438926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438926/PHESPV0136.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438926/PHESPV0136.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438926/ERR1438926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438926/ERR1438926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438926/PHESPV0136.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438926/PHESPV0136.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71856972;74189489 ERS1194305 ERX1509304 GENOMIC 228311695 2016-06-10 PHESPV0136 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438926/PHESPV0136.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438926/PHESPV0136.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438926 PHESPV0136 ERR1438928 PHESPV0138 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438928 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438928 6905340d5ed790b2fd28382ba2d527e3;436136aebc981052aa587d8c6d174321 1313 122123433 fe004f3c9c4dde4ef36baa3e8ffbad33;d68f1f9d1a1e2bd9b67f5513447e5be4 SAMEA4023197 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438928/ERR1438928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438928/ERR1438928_2.fastq.gz 1401689 WGS PHESPV0138 RANDOM 82436376;83874088 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6bc80921031e659aa89945e1022fe8e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438928/ERR1438928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438928/ERR1438928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438928/PHESPV0138.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438928/PHESPV0138.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438928/ERR1438928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438928/ERR1438928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438928/PHESPV0138.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438928/PHESPV0138.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87114321;88550883 ERS1194307 ERX1509306 GENOMIC 278135020 2016-06-10 PHESPV0138 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438928/PHESPV0138.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438928/PHESPV0138.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438928 PHESPV0138 ERR1438933 PHESPV0143 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438933 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438933 8858ea4c5c2a023c16bd2fdbf37e1bb0;c5a4b6c51ccf25a81ef59ae07fe7b14b 1313 70356469 0b86fdbb5872a9f9c219217dff7f579e;d02dfd41d8fb884eea39a40eee98e74f SAMEA4023202 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438933/ERR1438933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438933/ERR1438933_2.fastq.gz 804368 WGS PHESPV0143 RANDOM 47388173;48179881 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d224a0d7b88712c084309340ffe36197 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438933/ERR1438933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438933/ERR1438933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438933/PHESPV0143.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438933/PHESPV0143.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438933/ERR1438933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438933/ERR1438933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438933/PHESPV0143.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438933/PHESPV0143.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50268428;51061798 ERS1194312 ERX1509311 GENOMIC 159551806 2016-06-10 PHESPV0143 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438933/PHESPV0143.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438933/PHESPV0143.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438933 PHESPV0143 ERR1438937 PHESPV0147 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438937 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438937 808fe750f946b6e2a2d5f9fa59f7ff9a;e7d1c6032a3a497fda8bd12411e80f2d 1313 102088322 beb146cc6e3a6c7eca6e70708d594d03;3df6bb1e3eea92f5c02c0b9daa0f5ae0 SAMEA4023206 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438937/ERR1438937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438937/ERR1438937_2.fastq.gz 1192013 WGS PHESPV0147 RANDOM 67879583;70670055 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dfedaece5cb88add7fe01461d412c40b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438937/ERR1438937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438937/ERR1438937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438937/PHESPV0147.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438937/PHESPV0147.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438937/ERR1438937_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438937/ERR1438937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438937/PHESPV0147.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438937/PHESPV0147.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71955823;74655291 ERS1194316 ERX1509315 GENOMIC 236385808 2016-06-10 PHESPV0147 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438937/PHESPV0147.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438937/PHESPV0147.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438937 PHESPV0147 ERR1438943 PHESPV0153 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438943 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438943 1c98b75ad18c23a8cd4d700bb2630c25;8b1884cdf3af85d56475d2fbdbd09b01 1313 164396201 105de907c736772fda66c74e896cf11d;db8d677f07c490cc7171b4c30c5d04ee SAMEA4023212 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438943/ERR1438943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438943/ERR1438943_2.fastq.gz 1820539 WGS PHESPV0153 RANDOM 108671421;112957915 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 237d852be982fdc81900a74acbfaf11d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438943/ERR1438943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438943/ERR1438943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438943/PHESPV0153.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438943/PHESPV0153.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438943/ERR1438943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438943/ERR1438943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438943/PHESPV0153.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438943/PHESPV0153.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114554735;118837268 ERS1194322 ERX1509321 GENOMIC 360834285 2016-06-10 PHESPV0153 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438943/PHESPV0153.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438943/PHESPV0153.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438943 PHESPV0153 ERR1438945 PHESPV0155 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438945 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438945 ff79dcfd889c241d7c46fbfb6b5cf668;35daa355db46a43047e6548068702d90 1313 80806215 94920285087897ad089bbd1bfa400fd7;90e5fe67dd50a07481899f11ca4be256 SAMEA4023214 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438945/ERR1438945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438945/ERR1438945_2.fastq.gz 920874 WGS PHESPV0155 RANDOM 54452419;55154146 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 32dcd27ec09ad592c64112bcbe9347bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438945/ERR1438945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438945/ERR1438945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438945/PHESPV0155.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438945/PHESPV0155.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438945/ERR1438945_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438945/ERR1438945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438945/PHESPV0155.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438945/PHESPV0155.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57690647;58398049 ERS1194324 ERX1509323 GENOMIC 182685232 2016-06-10 PHESPV0155 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438945/PHESPV0155.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438945/PHESPV0155.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438945 PHESPV0155 ERR1438946 PHESPV0156 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438946 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438946 d5bc0d90cb18f641cb81f29726748f7d;4631ba28fa7d299f4ed7b666136f261d 1313 119245884 5088bc5c7328d8195a3215b9666d65ca;e11f4e09054fbc2a05e3bbae03a97a1d SAMEA4023215 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438946/ERR1438946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438946/ERR1438946_2.fastq.gz 1354749 WGS PHESPV0156 RANDOM 80279000;81740394 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 880fc40e7186990cbd09c30aaa320703 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438946/ERR1438946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438946/ERR1438946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438946/PHESPV0156.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438946/PHESPV0156.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438946/ERR1438946_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438946/ERR1438946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438946/PHESPV0156.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438946/PHESPV0156.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84834483;86298539 ERS1194325 ERX1509324 GENOMIC 268767311 2016-06-10 PHESPV0156 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438946/PHESPV0156.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438946/PHESPV0156.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438946 PHESPV0156 ERR1438950 PHESPV0160 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438950 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438950 9c151e75cefc00cf76565f69b48ade63;9c609ba4f5da0160f87489bd2e935dfa 1313 59651200 baf212cf55d405b61199422590c1a953;655466923412b1897f90c3c215a17cab SAMEA4023219 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438950/ERR1438950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438950/ERR1438950_2.fastq.gz 678180 WGS PHESPV0160 RANDOM 40062700;40948348 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 64898cfd48cca8b7cb41f7b128b2f3ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438950/ERR1438950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438950/ERR1438950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438950/PHESPV0160.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438950/PHESPV0160.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438950/ERR1438950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438950/ERR1438950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438950/PHESPV0160.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438950/PHESPV0160.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 42534880;43409087 ERS1194329 ERX1509328 GENOMIC 134445926 2016-06-10 PHESPV0160 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438950/PHESPV0160.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438950/PHESPV0160.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438950 PHESPV0160 ERR1438947 PHESPV0157 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438947 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438947 81014fc8d8047da3b89c9694129b8761;67663e59a7140af93ffdf83e06326c3e 1313 96184579 c5523a8f01212be963aaeb5e394bc3fe;d88a96466199e13ccae752668828c238 SAMEA4023216 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438947/ERR1438947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438947/ERR1438947_2.fastq.gz 1099112 WGS PHESPV0157 RANDOM 64746424;65906914 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 272ba60a93f137db1c8cc08bd3c0ea09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438947/ERR1438947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438947/ERR1438947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438947/PHESPV0157.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438947/PHESPV0157.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438947/ERR1438947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438947/ERR1438947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438947/PHESPV0157.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438947/PHESPV0157.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68540322;69701941 ERS1194326 ERX1509325 GENOMIC 218029878 2016-06-10 PHESPV0157 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438947/PHESPV0157.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438947/PHESPV0157.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438947 PHESPV0157 ERR1438948 PHESPV0158 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438948 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438948 4288d0b54b9c71dcdeb47530a3b20b70;17ac77fe3bce7cee9fb334353c712518 1313 117664224 05dd7d8fc95cb9026f99a4b179d13cee;3028e99cba4dd1c41b5384852f7f0e7d SAMEA4023217 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438948/ERR1438948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438948/ERR1438948_2.fastq.gz 1336823 WGS PHESPV0158 RANDOM 77626670;81831440 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline caee25422e190fe3215b987680ac7e48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438948/ERR1438948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438948/ERR1438948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438948/PHESPV0158.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438948/PHESPV0158.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438948/ERR1438948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438948/ERR1438948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438948/PHESPV0158.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438948/PHESPV0158.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82123824;86297005 ERS1194327 ERX1509326 GENOMIC 264889062 2016-06-10 PHESPV0158 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438948/PHESPV0158.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438948/PHESPV0158.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438948 PHESPV0158 ERR1438951 PHESPV0161 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438951 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438951 87ae8eb00842e49ef3c0626d60a35b42;7c7b5ec07144d41035be86f43f507222 1313 97072898 2c4024b1f3aaddf61436d4bf97545795;40b1caaacd95dcd88ca2f7dace3be7eb SAMEA4023220 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438951/ERR1438951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438951/ERR1438951_2.fastq.gz 1092442 WGS PHESPV0161 RANDOM 64439782;67054388 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c2a5ac3e460134221f6841b8bc72b244 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438951/ERR1438951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438951/ERR1438951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438951/PHESPV0161.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438951/PHESPV0161.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438951/ERR1438951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438951/ERR1438951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438951/PHESPV0161.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438951/PHESPV0161.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68218446;70803958 ERS1194330 ERX1509329 GENOMIC 216318272 2016-06-10 PHESPV0161 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438951/PHESPV0161.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438951/PHESPV0161.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438951 PHESPV0161 ERR1438949 PHESPV0159 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438949 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438949 69fcb7ee02e2520617738857789e3b8c;3b3a8b10ee3738fe35c19fcad0cf0c89 1313 57533872 32a43e7193e9a6cc0a2e6f2325c6ed0e;2d230604886515c07c6dc58aee5b8a3a SAMEA4023218 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438949/ERR1438949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438949/ERR1438949_2.fastq.gz 650592 WGS PHESPV0159 RANDOM 38330182;39484150 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ea34755620625d55660f1d5aaffca9b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438949/ERR1438949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438949/ERR1438949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438949/PHESPV0159.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438949/PHESPV0159.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438949/ERR1438949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438949/ERR1438949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438949/PHESPV0159.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438949/PHESPV0159.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 40718702;41851211 ERS1194328 ERX1509327 GENOMIC 128833484 2016-06-10 PHESPV0159 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438949/PHESPV0159.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438949/PHESPV0159.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438949 PHESPV0159 ERR1438952 PHESPV0162 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438952 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438952 a4ba68f34d7e6000ae62b4e905b5d96f;fe5fceda89d0ff390868f750a6923a6b 1313 89689110 dcd5fbcebee083876bbd350f255f7346;8a6d3a61953b2bfa7a8b27003293ec56 SAMEA4023221 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438952/ERR1438952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438952/ERR1438952_2.fastq.gz 1092809 WGS PHESPV0162 RANDOM 60377861;62554260 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0cf3fc1c812bcfb0dc6503f8e65c39f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438952/ERR1438952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438952/ERR1438952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438952/PHESPV0162.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438952/PHESPV0162.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438952/ERR1438952_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438952/ERR1438952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438952/PHESPV0162.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438952/PHESPV0162.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64096804;66194892 ERS1194331 ERX1509330 GENOMIC 217001554 2016-06-10 PHESPV0162 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438952/PHESPV0162.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438952/PHESPV0162.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438952 PHESPV0162 ERR1438953 PHESPV0163 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438953 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438953 7559372ce72907b8d475c316a351045e;aaff365bd859d970394e067c4b9d1df8 1313 130938984 44a12f6cb2de8fb790500f33d18d72b6;67bb4deb26be4dc3e3b3af9615782ea1 SAMEA4023222 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438953/ERR1438953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438953/ERR1438953_2.fastq.gz 1595985 WGS PHESPV0163 RANDOM 88186516;91357641 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9b4befa5ea3fa0e24495fd6b48e63087 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438953/ERR1438953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438953/ERR1438953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438953/PHESPV0163.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438953/PHESPV0163.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438953/ERR1438953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438953/ERR1438953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438953/PHESPV0163.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438953/PHESPV0163.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93402276;96499464 ERS1194332 ERX1509331 GENOMIC 316859441 2016-06-10 PHESPV0163 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438953/PHESPV0163.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438953/PHESPV0163.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438953 PHESPV0163 ERR1438956 PHESPV0166 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438956 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438956 10108514cb2fa4c3cb4b4d7d06b3619d;c467599e8edba51b4207efd9e38e42e9 1313 111474691 2682c9724cbf6a021fe7def91ad5b847;74f6e338ec0b7841ce01501d8f4e5d04 SAMEA4023225 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438956/ERR1438956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438956/ERR1438956_2.fastq.gz 1365988 WGS PHESPV0166 RANDOM 75087102;77453664 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 79f3474c113dd9e5349c4c18d984cd6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438956/ERR1438956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438956/ERR1438956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438956/PHESPV0166.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438956/PHESPV0166.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438956/ERR1438956_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438956/ERR1438956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438956/PHESPV0166.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438956/PHESPV0166.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79603782;81904356 ERS1194335 ERX1509334 GENOMIC 271427911 2016-06-10 PHESPV0166 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438956/PHESPV0166.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438956/PHESPV0166.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438956 PHESPV0166 ERR1438955 PHESPV0165 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438955 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438955 deeea57e856926a831b3def22c27bf37;4b632030eef5b8c9955d7649f9e85cad 1313 138375107 de85948847ffe7db52c95be508cc5366;3e361c80267e614557c1e41341aa6294 SAMEA4023224 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438955/ERR1438955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438955/ERR1438955_2.fastq.gz 1698402 WGS PHESPV0165 RANDOM 93223582;96756339 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d64cdbcc938a9cf440103762f3543f3e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438955/ERR1438955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438955/ERR1438955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438955/PHESPV0165.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438955/PHESPV0165.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438955/ERR1438955_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438955/ERR1438955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438955/PHESPV0165.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438955/PHESPV0165.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98737984;102208080 ERS1194334 ERX1509333 GENOMIC 337385896 2016-06-10 PHESPV0165 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438955/PHESPV0165.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438955/PHESPV0165.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438955 PHESPV0165 ERR1438954 PHESPV0164 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438954 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438954 2d99b83451a13b9e9691329814c834bc;a46279e9e92e61b1d01f1d753ac78d56 1313 96809958 9ec89e06f53695008f2150430bcb8d01;42c3b5e303a495bd10683598c842953b SAMEA4023223 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438954/ERR1438954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438954/ERR1438954_2.fastq.gz 1180504 WGS PHESPV0164 RANDOM 65177936;67445235 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f6bea760d7f1d32dabc97b3d8715d41 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438954/ERR1438954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438954/ERR1438954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438954/PHESPV0164.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438954/PHESPV0164.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438954/ERR1438954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438954/ERR1438954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438954/PHESPV0164.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438954/PHESPV0164.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69164515;71359024 ERS1194333 ERX1509332 GENOMIC 234417781 2016-06-10 PHESPV0164 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438954/PHESPV0164.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438954/PHESPV0164.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438954 PHESPV0164 ERR1438957 PHESPV0167 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438957 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438957 ac9b51dd429b2f635ff28eab44d3df41;5f54a78185389e02cced0b141c64eee8 1313 132295699 68344bc65ca60022a26fdeab17d10421;b2a291b6427ad4f60fb7ac4cb7700702 SAMEA4023226 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438957/ERR1438957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438957/ERR1438957_2.fastq.gz 1606343 WGS PHESPV0167 RANDOM 88672100;92284233 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 698c8f25d52013feeb902e8750b7cdfa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438957/ERR1438957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438957/ERR1438957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438957/PHESPV0167.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438957/PHESPV0167.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438957/ERR1438957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438957/ERR1438957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438957/PHESPV0167.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438957/PHESPV0167.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93874484;97402915 ERS1194336 ERX1509335 GENOMIC 318788799 2016-06-10 PHESPV0167 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438957/PHESPV0167.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438957/PHESPV0167.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438957 PHESPV0167 ERR1438958 PHESPV0168 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438958 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438958 4a5a2a2b06ef79d39cdf91d0d71cf737;c4f8d93ac29b173634ca60440bdd1e75 1313 82926013 0fe254771264f2658fe259e78052357f;4c4152c521381a564e699049a7b227a2 SAMEA4023227 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438958/ERR1438958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438958/ERR1438958_2.fastq.gz 939422 WGS PHESPV0168 RANDOM 55752115;56700151 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 73c982a52946836e2e8fa6b87733a76a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438958/ERR1438958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438958/ERR1438958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438958/PHESPV0168.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438958/PHESPV0168.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438958/ERR1438958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438958/ERR1438958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438958/PHESPV0168.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438958/PHESPV0168.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59047983;59989924 ERS1194337 ERX1509336 GENOMIC 186255744 2016-06-10 PHESPV0168 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438958/PHESPV0168.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438958/PHESPV0168.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438958 PHESPV0168 ERR1438959 PHESPV0169 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438959 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438959 2a32469ec920450f5fd8cde9e476368f;b893845ecf3dd914d3f6ddc4a7b70f2b 1313 46194226 f280e10026df9cfcb4929b6732462a2b;a372db3d0b62b5c0ba15e3604c045336 SAMEA4023228 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438959/ERR1438959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438959/ERR1438959_2.fastq.gz 523938 WGS PHESPV0169 RANDOM 31092725;31578345 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8c55b64abf247d4b799ae90a70521b84 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438959/ERR1438959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438959/ERR1438959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438959/PHESPV0169.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438959/PHESPV0169.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438959/ERR1438959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438959/ERR1438959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438959/PHESPV0169.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438959/PHESPV0169.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 33055855;33537958 ERS1194338 ERX1509337 GENOMIC 103901493 2016-06-10 PHESPV0169 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438959/PHESPV0169.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438959/PHESPV0169.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438959 PHESPV0169 ERR1438960 PHESPV0170 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438960 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438960 07cb426e5b2bdd6acbadab0d8e9c4870;ee86a13dc7aaad08f68016bbe6eb07d0 1313 121740613 3f385d08b5a80a8ce91bf444804fa215;3a85b4a7666d7a9842f9515188d72a6d SAMEA4023229 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438960/ERR1438960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438960/ERR1438960_2.fastq.gz 1376035 WGS PHESPV0170 RANDOM 81082709;83343134 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 44813a333fb7f81027aa400af8c50dd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438960/ERR1438960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438960/ERR1438960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438960/PHESPV0170.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438960/PHESPV0170.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438960/ERR1438960_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438960/ERR1438960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438960/PHESPV0170.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438960/PHESPV0170.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85654725;87879262 ERS1194339 ERX1509338 GENOMIC 272437966 2016-06-10 PHESPV0170 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438960/PHESPV0170.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438960/PHESPV0170.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438960 PHESPV0170 ERR1438961 PHESPV0171 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438961 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438961 4ebf6889fccb3a5bb79538a13bd97977;e01cc6dd386743105738b9709a9aa4ae 1313 71990298 6d60cd527b7a1a73612acf6c4bcc211e;a132cac58990ea3d38a0da0754c8696d SAMEA4023230 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438961/ERR1438961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438961/ERR1438961_2.fastq.gz 820079 WGS PHESPV0171 RANDOM 48442767;48979575 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 507422f87428dadda04db540b978e8ca ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438961/ERR1438961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438961/ERR1438961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438961/PHESPV0171.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438961/PHESPV0171.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438961/ERR1438961_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438961/ERR1438961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438961/PHESPV0171.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438961/PHESPV0171.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51355599;51886518 ERS1194340 ERX1509339 GENOMIC 162537318 2016-06-10 PHESPV0171 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438961/PHESPV0171.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438961/PHESPV0171.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438961 PHESPV0171 ERR1438962 PHESPV0172 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438962 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438962 bab14aee3fc6cc0ece5a5dbabf27a12f;56cdfeba773dbc7fb61ad42def55e642 1313 69737479 f1be7a1f3b0450f89c7c8a5ec60a8737;09330d4eaca0f08167a4885b0c7d5df0 SAMEA4023231 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438962/ERR1438962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438962/ERR1438962_2.fastq.gz 790478 WGS PHESPV0172 RANDOM 46759944;47982516 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7811b5ca40d429cdec5090de128c80d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438962/ERR1438962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438962/ERR1438962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438962/PHESPV0172.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438962/PHESPV0172.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438962/ERR1438962_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438962/ERR1438962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438962/PHESPV0172.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438962/PHESPV0172.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49594261;50805725 ERS1194341 ERX1509340 GENOMIC 156713375 2016-06-10 PHESPV0172 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438962/PHESPV0172.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438962/PHESPV0172.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438962 PHESPV0172 ERR1438963 PHESPV0173 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438963 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438963 fcf53855fdac0a87d0dd0cd83dcffff0;b256f9874a03b00db644c905186f58b8 1313 133761840 4f23606a3e2fc9ecda334230097f4db5;2e7c26cadda24c7bfb9fc78b3bdd8032 SAMEA4023232 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438963/ERR1438963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438963/ERR1438963_2.fastq.gz 1627851 WGS PHESPV0173 RANDOM 89119255;94392850 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8cf4a531869c13225bb6c02af836b41e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438963/ERR1438963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438963/ERR1438963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438963/PHESPV0173.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438963/PHESPV0173.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438963/ERR1438963_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438963/ERR1438963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438963/PHESPV0173.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438963/PHESPV0173.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94373324;99576683 ERS1194342 ERX1509341 GENOMIC 323537353 2016-06-10 PHESPV0173 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438963/PHESPV0173.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438963/PHESPV0173.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438963 PHESPV0173 ERR1438965 PHESPV0175 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438965 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438965 13fb17a455aa50809d51aaf30d8e873d;979517129fc6997abfc9f0d62afd3889 1313 110281263 2f263e1e8f9ac3fd0e4a72aedc231c66;ac2ba64e79be79bfd9ce54a94b942668 SAMEA4023234 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438965/ERR1438965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438965/ERR1438965_2.fastq.gz 1258769 WGS PHESPV0175 RANDOM 73994948;75087277 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7fd9ab9868e83b228d01f4de9285a9bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438965/ERR1438965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438965/ERR1438965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438965/PHESPV0175.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438965/PHESPV0175.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438965/ERR1438965_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438965/ERR1438965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438965/PHESPV0175.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438965/PHESPV0175.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78261507;79344035 ERS1194344 ERX1509343 GENOMIC 249521485 2016-06-10 PHESPV0175 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438965/PHESPV0175.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438965/PHESPV0175.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438965 PHESPV0175 ERR1438967 PHESPV0177 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438967 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438967 6966d478bb3ea5365fb41c96e9d6ae18;91824da2b939b6821c00581d0ec8eded 1313 38446227 d8344caab289e69ca26ebb781c78b3b3;67ab0d9d1f7ddf28337820af1fbeef86 SAMEA4023236 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438967/ERR1438967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438967/ERR1438967_2.fastq.gz 463513 WGS PHESPV0177 RANDOM 25392041;27023633 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8fcfd0039e0ae9741c1e31366fc7e1eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438967/ERR1438967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438967/ERR1438967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438967/PHESPV0177.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438967/PHESPV0177.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438967/ERR1438967_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438967/ERR1438967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438967/PHESPV0177.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438967/PHESPV0177.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 27138742;28717142 ERS1194346 ERX1509345 GENOMIC 92054660 2016-06-10 PHESPV0177 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438967/PHESPV0177.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438967/PHESPV0177.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438967 PHESPV0177 ERR1438966 PHESPV0176 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438966 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438966 a373f0f532d43e0a4b08d3fcc0eae52a;137ddf53e2bd60dce26d76afb08b4d8e 1313 147118758 ac80d7dfafd45f1ad780d1721baca3b8;9043baf3f0c55b057edad53f23c59a1f SAMEA4023235 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438966/ERR1438966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438966/ERR1438966_2.fastq.gz 1800724 WGS PHESPV0176 RANDOM 99171321;102631153 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21620778de2564d87fc0d9c06983d029 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438966/ERR1438966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438966/ERR1438966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438966/PHESPV0176.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438966/PHESPV0176.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438966/ERR1438966_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438966/ERR1438966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438966/PHESPV0176.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438966/PHESPV0176.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104976361;108375662 ERS1194345 ERX1509344 GENOMIC 357674583 2016-06-10 PHESPV0176 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438966/PHESPV0176.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438966/PHESPV0176.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438966 PHESPV0176 ERR1438968 PHESPV0178 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438968 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438968 15ee6032be3a90bd5f4e387818185b72;11f947ff5ddc59f333f221a95bb8ed71 1313 77107231 77deb0f93e35e67fdb61a51cb033112c;6dae0cc699fd488554cde5893035ffc4 SAMEA4023237 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438968/ERR1438968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438968/ERR1438968_2.fastq.gz 940355 WGS PHESPV0178 RANDOM 51743961;53445385 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3873c0e92c2023e4d5dec1ca753e3cd3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438968/ERR1438968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438968/ERR1438968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438968/PHESPV0178.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438968/PHESPV0178.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438968/ERR1438968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438968/ERR1438968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438968/PHESPV0178.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438968/PHESPV0178.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55008359;56646756 ERS1194347 ERX1509346 GENOMIC 186706183 2016-06-10 PHESPV0178 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438968/PHESPV0178.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438968/PHESPV0178.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438968 PHESPV0178 ERR1438969 PHESPV0179 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438969 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438969 30c418c51f5c5cf0fccc16509135a583;72aae49e4e4ca97fbd977bd6dfab3bc6 1313 87075529 7430eeaa6a3e5c49d832c9cb94307ea3;bde3017de33651ef89a87ccd9b9b662a SAMEA4023238 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438969/ERR1438969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438969/ERR1438969_2.fastq.gz 1060186 WGS PHESPV0179 RANDOM 58340215;60447812 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad14567423b900779a0333a74d38d47d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438969/ERR1438969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438969/ERR1438969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438969/PHESPV0179.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438969/PHESPV0179.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438969/ERR1438969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438969/ERR1438969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438969/PHESPV0179.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438969/PHESPV0179.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62010221;64055760 ERS1194348 ERX1509347 GENOMIC 210463722 2016-06-10 PHESPV0179 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438969/PHESPV0179.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438969/PHESPV0179.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438969 PHESPV0179 ERR1438970 PHESPV0180 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438970 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438970 6f83e985785d422b5bce58374404586d;cd08b3b370a659268b73cf968ce8fd47 1313 116938992 5074b92fa4926bb808b9bf218703dc9b;f875ea76b2e633698845e178ae71579b SAMEA4023239 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438970/ERR1438970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438970/ERR1438970_2.fastq.gz 1428024 WGS PHESPV0180 RANDOM 78638799;81817278 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline efeea78558a78a3dba62a1ce26af37d3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438970/ERR1438970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438970/ERR1438970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438970/PHESPV0180.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438970/PHESPV0180.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438970/ERR1438970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438970/ERR1438970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438970/PHESPV0180.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438970/PHESPV0180.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83369599;86475868 ERS1194349 ERX1509348 GENOMIC 283647745 2016-06-10 PHESPV0180 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438970/PHESPV0180.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438970/PHESPV0180.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438970 PHESPV0180 ERR1438972 PHESPV0182 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438972 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438972 3b78e4581908793791418de75aa2259e;9a1ccadc34fec7a7480677b950c897dc 1313 141191029 d1e367700502e6ff41b4954add79cfa9;106c5ddb169cfcb018eb47322d9373ed SAMEA4023241 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438972/ERR1438972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438972/ERR1438972_2.fastq.gz 1726236 WGS PHESPV0182 RANDOM 94965834;98630982 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 092962d812158837d74aceffe81aaa76 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438972/ERR1438972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438972/ERR1438972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438972/PHESPV0182.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438972/PHESPV0182.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438972/ERR1438972_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438972/ERR1438972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438972/PHESPV0182.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438972/PHESPV0182.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100539561;104145027 ERS1194351 ERX1509350 GENOMIC 342964729 2016-06-10 PHESPV0182 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438972/PHESPV0182.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438972/PHESPV0182.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438972 PHESPV0182 ERR1438973 PHESPV0183 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438973 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438973 ee5e6128b316b591acbaada4712d5f01;cce90aff241d2dc795528f8ed4b5c114 1313 131983194 bbfdb6de32d7c2062dcc53d356d4ff78;c0cd9ed1ef93f78ad4eb151fd667cd9f SAMEA4023242 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438973/ERR1438973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438973/ERR1438973_2.fastq.gz 1626521 WGS PHESPV0183 RANDOM 88811827;92033082 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 537a68bd290b263b0e00dd43a8ca204b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438973/ERR1438973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438973/ERR1438973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438973/PHESPV0183.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438973/PHESPV0183.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438973/ERR1438973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438973/ERR1438973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438973/PHESPV0183.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438973/PHESPV0183.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94120324;97272366 ERS1194352 ERX1509351 GENOMIC 323078134 2016-06-10 PHESPV0183 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438973/PHESPV0183.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438973/PHESPV0183.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438973 PHESPV0183 ERR1438974 PHESPV0184 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438974 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438974 ad338fb17dd2637db073d8539261e661;648c375edb50c118ed022ceeb81fe880 1313 106791944 d725958b87f44560c1389c291e21213f;8527404b54320fc684bce5a1b4082eb3 SAMEA4023243 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438974/ERR1438974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438974/ERR1438974_2.fastq.gz 1295498 WGS PHESPV0184 RANDOM 71175445;73876522 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 699e6ac17c3eb2419beb667e15531041 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438974/ERR1438974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438974/ERR1438974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438974/PHESPV0184.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438974/PHESPV0184.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438974/ERR1438974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438974/ERR1438974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438974/PHESPV0184.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438974/PHESPV0184.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75465153;78085699 ERS1194353 ERX1509352 GENOMIC 256946965 2016-06-10 PHESPV0184 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438974/PHESPV0184.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438974/PHESPV0184.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438974 PHESPV0184 ERR1438977 PHESPV0187 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438977 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438977 f715c09057d950cb6ab383d35df339f3;3056a8ad0f8c94ff1ba2e8991dca2c02 1313 90137065 14a94676f7a2e3e6e1ffbd5a8bdde52b;9c2112fd29658ee15f3694a6b8261e03 SAMEA4023246 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438977/ERR1438977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438977/ERR1438977_2.fastq.gz 1093768 WGS PHESPV0187 RANDOM 59636193;63716466 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21772818370d8870f99ea4eb85d2beb8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438977/ERR1438977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438977/ERR1438977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438977/PHESPV0187.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438977/PHESPV0187.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438977/ERR1438977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438977/ERR1438977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438977/PHESPV0187.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438977/PHESPV0187.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63366051;67369210 ERS1194356 ERX1509355 GENOMIC 217326727 2016-06-10 PHESPV0187 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438977/PHESPV0187.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438977/PHESPV0187.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438977 PHESPV0187 ERR1438975 PHESPV0185 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438975 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438975 604adebd88bc7b1271bd162e24447b12;ecd609f403c47f55174ea55011547bf8 1313 89333499 6402243ee69d5feda2ef87d2854e6965;d281aac1ebcd830b79cfe6c64d2104ca SAMEA4023244 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438975/ERR1438975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438975/ERR1438975_2.fastq.gz 1095077 WGS PHESPV0185 RANDOM 60103824;62360036 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 168ea3d5e0fc0ff2c025c7c0e1a58a3d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438975/ERR1438975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438975/ERR1438975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438975/PHESPV0185.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438975/PHESPV0185.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438975/ERR1438975_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438975/ERR1438975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438975/PHESPV0185.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438975/PHESPV0185.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63870962;66059166 ERS1194354 ERX1509353 GENOMIC 217502210 2016-06-10 PHESPV0185 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438975/PHESPV0185.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438975/PHESPV0185.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438975 PHESPV0185 ERR1438980 PHESPV0191 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438980 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438980 a865d013c28d047276a7a3261c6cc9a8;ba609b57d85cdf789221deb4ed66bff4 1313 165209318 004fefc4c59e63caf8f52728106644cb;41a11219b2d5537fa97d24b27be16389 SAMEA4023249 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438980/ERR1438980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438980/ERR1438980_2.fastq.gz 2023966 WGS PHESPV0191 RANDOM 111267044;115371952 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4643d47d30450c056ee15fbd44a3e4ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438980/ERR1438980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438980/ERR1438980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438980/PHESPV0191.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438980/PHESPV0191.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438980/ERR1438980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438980/ERR1438980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438980/PHESPV0191.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438980/PHESPV0191.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117683966;121707508 ERS1194359 ERX1509358 GENOMIC 402147927 2016-06-10 PHESPV0191 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438980/PHESPV0191.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438980/PHESPV0191.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438980 PHESPV0191 ERR1438981 PHESPV0192 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438981 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438981 140a46ef13b9a229881363624b4da261;52c84291df92ce355cfbe8f75ad5d343 1313 79446586 62d2c86e97c3df9c63dea92ffe18cd7d;314cf34e53074754f144904dd6547ae8 SAMEA4023250 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438981/ERR1438981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438981/ERR1438981_2.fastq.gz 969927 WGS PHESPV0192 RANDOM 53327807;55278290 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7abaf583dd25fc602877b9b7d482676a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438981/ERR1438981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438981/ERR1438981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438981/PHESPV0192.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438981/PHESPV0192.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438981/ERR1438981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438981/ERR1438981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438981/PHESPV0192.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438981/PHESPV0192.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56706396;58588692 ERS1194360 ERX1509359 GENOMIC 192563161 2016-06-10 PHESPV0192 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438981/PHESPV0192.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438981/PHESPV0192.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438981 PHESPV0192 ERR1438982 PHESPV0193 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438982 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438982 d544f1a073f48a000d25db6b00a0ccd6;f01eabafaede2d640009f211d79246b6 1313 90949140 1c7c2ffa165b3950abe74a07212595a2;8ba38c11a60172354f0c862dbd5fe5c1 SAMEA4023251 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438982/ERR1438982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438982/ERR1438982_2.fastq.gz 1112084 WGS PHESPV0193 RANDOM 61107721;63542952 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1cf3fb0901d410ff1bc62ed3640bc3d3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438982/ERR1438982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438982/ERR1438982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438982/PHESPV0193.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438982/PHESPV0193.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438982/ERR1438982_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438982/ERR1438982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438982/PHESPV0193.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438982/PHESPV0193.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64916860;67272730 ERS1194361 ERX1509360 GENOMIC 220879879 2016-06-10 PHESPV0193 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438982/PHESPV0193.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438982/PHESPV0193.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438982 PHESPV0193 ERR1439008 PHESPV0219 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439008 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439008 b7aa6972272c9da4c865619269332d67;d77f28bd5ef4d0ea93cd6905eb4a96cb 1313 361489541 9c1982a3eec60bf38c371abbd68bbaf2;3edabb28b984aae3b6d763fbe72479e3 SAMEA4023277 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439008/ERR1439008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439008/ERR1439008_2.fastq.gz 2823596 WGS PHESPV0219 RANDOM 236739932;239539547 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ee7336a99c8780c982acdc12e81a258 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439008/ERR1439008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439008/ERR1439008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439008/PHESPV0219.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439008/PHESPV0219.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439008/ERR1439008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439008/ERR1439008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439008/PHESPV0219.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439008/PHESPV0219.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 229483374;232255472 ERS1194387 ERX1509386 GENOMIC 546266733 2016-06-10 PHESPV0219 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439008/PHESPV0219.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439008/PHESPV0219.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439008 PHESPV0219 ERR1439007 PHESPV0218 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439007 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439007 e2e470829b2617de562ec42b656aa0ba;1560106b926fabb03d89e03be1812d7a 1313 403521734 39fe082be554f48f4b161fabf17091c9;1c591f98fb629e9fe0e94850f5fcdb53 SAMEA4023276 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439007/ERR1439007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439007/ERR1439007_2.fastq.gz 3138800 WGS PHESPV0218 RANDOM 262389496;269168633 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8da0a803bbaf85949ebf56e50e79e723 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439007/ERR1439007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439007/ERR1439007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439007/PHESPV0218.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439007/PHESPV0218.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439007/ERR1439007_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439007/ERR1439007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439007/PHESPV0218.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439007/PHESPV0218.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 254119163;260853495 ERS1194386 ERX1509385 GENOMIC 605579334 2016-06-10 PHESPV0218 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439007/PHESPV0218.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439007/PHESPV0218.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439007 PHESPV0218 ERR1439012 PHESPV0223 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439012 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439012 8e6dd662b8a5217cda4c8572cff8d622;aa3ad3dfcaf8c73586e8ac582a4b7705 1313 387670849 1c3d2b11322c1e681880dd76a971d994;db7f5dcc3cc5ebc9374b76649d13a20a SAMEA4023281 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439012/ERR1439012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439012/ERR1439012_2.fastq.gz 3023903 WGS PHESPV0223 RANDOM 253145185;257704057 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 48f8bf0651417d129d24667e554aabd8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439012/ERR1439012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439012/ERR1439012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439012/PHESPV0223.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439012/PHESPV0223.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439012/ERR1439012_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439012/ERR1439012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439012/PHESPV0223.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439012/PHESPV0223.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 245208934;249741511 ERS1194391 ERX1509390 GENOMIC 583796369 2016-06-10 PHESPV0223 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439012/PHESPV0223.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439012/PHESPV0223.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439012 PHESPV0223 ERR1439013 PHESPV0224 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439013 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439013 5b6d0ca2389f2e76900b9936d3632d16;847fa82dab439f20befcbd3b90d58c01 1313 335577704 25a2af2e2ad4fd13a916856f74eceed2;58c52e09ed2a9a5653cad89ae618fd3c SAMEA4023282 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439013/ERR1439013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439013/ERR1439013_2.fastq.gz 2659238 WGS PHESPV0224 RANDOM 208324758;210641298 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 070f69ef400452399e0bf27e806a65a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439013/ERR1439013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439013/ERR1439013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439013/PHESPV0224.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439013/PHESPV0224.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439013/ERR1439013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439013/ERR1439013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439013/PHESPV0224.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439013/PHESPV0224.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 216264981;218552686 ERS1194392 ERX1509391 GENOMIC 514758126 2016-06-10 PHESPV0224 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439013/PHESPV0224.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439013/PHESPV0224.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439013 PHESPV0224 ERR1439016 PHESPV0227 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439016 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439016 0560baf17f65a4af0e92e707c1765f99;4d65ac48b3805a2b9419117efacd204c 1313 299429744 e2394b470e55f6d3452276090ee30e67;1dc90f0cfa89720e8c1e4d0938ae935c SAMEA4023285 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439016/ERR1439016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439016/ERR1439016_2.fastq.gz 2355553 WGS PHESPV0227 RANDOM 184166935;189388046 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ed477b5f2ce9cf97d569130cf7e0aa0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439016/ERR1439016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439016/ERR1439016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439016/PHESPV0227.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439016/PHESPV0227.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439016/ERR1439016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439016/ERR1439016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439016/PHESPV0227.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439016/PHESPV0227.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 191352416;196500433 ERS1194395 ERX1509394 GENOMIC 453974646 2016-06-10 PHESPV0227 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439016/PHESPV0227.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439016/PHESPV0227.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439016 PHESPV0227 ERR1439033 PHESPV0244 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439033 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439033 1ae9fc1b052b2007e957e9b8e1944917;ad1f25feccc750a576328531fcd0bf1a 1313 272135692 18a9a1461c11bcb1015603960f83b59d;5c138654a22b4d820d4c87524374d715 SAMEA4023302 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439033/ERR1439033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439033/ERR1439033_2.fastq.gz 2145253 WGS PHESPV0244 RANDOM 168481098;170999685 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1253eecca40ff991ead445ec0d2fb50e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439033/ERR1439033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439033/ERR1439033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439033/PHESPV0244.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439033/PHESPV0244.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439033/ERR1439033_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439033/ERR1439033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439033/PHESPV0244.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439033/PHESPV0244.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 175085991;177565797 ERS1194412 ERX1509411 GENOMIC 414223792 2016-06-10 PHESPV0244 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439033/PHESPV0244.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439033/PHESPV0244.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439033 PHESPV0244 ERR1439034 PHESPV0245 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439034 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439034 a0fb74bbd6a3b6535d51fd20f3b112df;175ddf58b5492553abff91f13f5f6ebb 1313 301464367 88b8726cc9e7bf3884622a27b0975844;ec4f1e8342ed34fb80b5558098ed318e SAMEA4023303 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439034/ERR1439034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439034/ERR1439034_2.fastq.gz 2336494 WGS PHESPV0245 RANDOM 195371732;201253466 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ae0409bff6c3dcc9b6d65be4f41ec1ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439034/ERR1439034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439034/ERR1439034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439034/PHESPV0245.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439034/PHESPV0245.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439034/ERR1439034_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439034/ERR1439034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439034/PHESPV0245.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439034/PHESPV0245.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 189401484;195254187 ERS1194413 ERX1509412 GENOMIC 449744047 2016-06-10 PHESPV0245 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439034/PHESPV0245.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439034/PHESPV0245.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439034 PHESPV0245 ERR1439030 PHESPV0241 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439030 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439030 bf7fbe59a056d1347ceb1af3003e32ed;8f1d21e1a97f9a0a7fa57b991f2b220e 1313 130634050 cc91a9a29db2dbcaaedc4153d87be028;ff24a49e4325d486b42dfa9c062edaab SAMEA4023299 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439030/ERR1439030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439030/ERR1439030_2.fastq.gz 1602104 WGS PHESPV0241 RANDOM 87331773;90949843 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bbe67fbcbb13f9401d0a352f7a230484 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439030/ERR1439030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439030/ERR1439030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439030/PHESPV0241.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439030/PHESPV0241.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439030/ERR1439030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439030/ERR1439030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439030/PHESPV0241.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439030/PHESPV0241.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92631257;96182200 ERS1194409 ERX1509408 GENOMIC 318349410 2016-06-10 PHESPV0241 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439030/PHESPV0241.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439030/PHESPV0241.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439030 PHESPV0241 ERR1439043 PHESPV0254 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439043 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439043 5637adb649798c3430063c4960f82f0f;41cbf6bc9928c3c0a0b045182daa3cfd 1313 116761336 6fe484a483f91f3e8f840faa08c81b8c;8d3d5b0b178140d8bc1a25ccd7502796 SAMEA4023312 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439043/ERR1439043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439043/ERR1439043_2.fastq.gz 1416557 WGS PHESPV0254 RANDOM 77992213;81948485 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3dd34a0b79521c530c1f43870f2eb75f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439043/ERR1439043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439043/ERR1439043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439043/PHESPV0254.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439043/PHESPV0254.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439043/ERR1439043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439043/ERR1439043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439043/PHESPV0254.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439043/PHESPV0254.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82670609;86540501 ERS1194422 ERX1509421 GENOMIC 281160472 2016-06-10 PHESPV0254 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439043/PHESPV0254.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439043/PHESPV0254.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439043 PHESPV0254 ERR1439046 PHESPV0257 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439046 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439046 5438f96a1005dbbf1258427f3163d052;755af381c950a4630002c236e2dbff88 1313 146667696 e8fd85318c5c37791922b736b3cfd47b;b22ccec40f8aaf70963dfb7f802d90b1 SAMEA4023315 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439046/ERR1439046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439046/ERR1439046_2.fastq.gz 1812176 WGS PHESPV0257 RANDOM 98702392;100867252 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69d16e4baa174cf99b3cd1ad14d60e98 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439046/ERR1439046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439046/ERR1439046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439046/PHESPV0257.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439046/PHESPV0257.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439046/ERR1439046_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439046/ERR1439046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439046/PHESPV0257.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439046/PHESPV0257.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104506728;106606467 ERS1194425 ERX1509424 GENOMIC 359876163 2016-06-10 PHESPV0257 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439046/PHESPV0257.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439046/PHESPV0257.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439046 PHESPV0257 ERR1439049 PHESPV0260 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439049 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439049 749a3448b99a2ad120f14c3c750737ca;04aab7f378c3aee0cc09905aa2c517ff 1313 182519475 29618a9fc68efa4531e168918e1d7ef2;66ffeb78390d528561665eee89fd11a1 SAMEA4023318 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439049/ERR1439049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439049/ERR1439049_2.fastq.gz 2259255 WGS PHESPV0260 RANDOM 123997699;127093620 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bb01fa2f199cbdfd1abc9dcda35e5d33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439049/ERR1439049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439049/ERR1439049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439049/PHESPV0260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439049/PHESPV0260.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439049/ERR1439049_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439049/ERR1439049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439049/PHESPV0260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439049/PHESPV0260.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131062147;134098888 ERS1194428 ERX1509427 GENOMIC 449137440 2016-06-10 PHESPV0260 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439049/PHESPV0260.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439049/PHESPV0260.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439049 PHESPV0260 ERR1439065 PHESPV0276 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439065 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439065 efa9de35638ca8f1511f2e24f3bfdadf;5bf8ab114dcf12730de70cf2eaccca47 1313 140047356 6ca7cf0e76df5028e458d491fa230fc7;95242dc4277dbfd72da10cbb1090d04d SAMEA4023334 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439065/ERR1439065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439065/ERR1439065_2.fastq.gz 1183836 WGS PHESPV0276 RANDOM 85121179;89394612 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5974994ca180074d0d055273806d088 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439065/ERR1439065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439065/ERR1439065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439065/PHESPV0276.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439065/PHESPV0276.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439065/ERR1439065_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439065/ERR1439065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439065/PHESPV0276.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439065/PHESPV0276.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89111134;93396881 ERS1194444 ERX1509443 GENOMIC 232033825 2016-06-10 PHESPV0276 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439065/PHESPV0276.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439065/PHESPV0276.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439065 PHESPV0276 ERR1439050 PHESPV0261 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439050 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439050 aa413444a89184ce2167e3a518f75ad9;5afc1e3e19250d21fdf2e1e9dc287b7e 1313 99250044 03d62d6fc5607716f77e87133face6d5;2d5c2e5712091915bd23001520a1c095 SAMEA4023319 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439050/ERR1439050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439050/ERR1439050_2.fastq.gz 1207147 WGS PHESPV0261 RANDOM 65955053;70106752 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fcb921b36bd981abcf49730eaae81ccd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439050/ERR1439050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439050/ERR1439050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439050/PHESPV0261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439050/PHESPV0261.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439050/ERR1439050_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439050/ERR1439050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439050/PHESPV0261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439050/PHESPV0261.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70048872;74132336 ERS1194429 ERX1509428 GENOMIC 239941053 2016-06-10 PHESPV0261 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439050/PHESPV0261.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439050/PHESPV0261.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439050 PHESPV0261 ERR1439064 PHESPV0275 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439064 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439064 4e8eda708774366aeba4624a1a9fa233;54b2626a885ffb08438fe85ba3852674 1313 212046462 fdc0b39019b0c7dd1f54ac0aeaee6819;d6212b40faced56d61a9f705f3eef1bd SAMEA4023333 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439064/ERR1439064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439064/ERR1439064_2.fastq.gz 2590070 WGS PHESPV0275 RANDOM 142750895;148598751 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline caab9fb2eee94031063b28b9156f037f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439064/ERR1439064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439064/ERR1439064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439064/PHESPV0275.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439064/PHESPV0275.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439064/ERR1439064_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439064/ERR1439064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439064/PHESPV0275.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439064/PHESPV0275.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 150621005;156414227 ERS1194443 ERX1509442 GENOMIC 514714278 2016-06-10 PHESPV0275 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439064/PHESPV0275.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439064/PHESPV0275.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439064 PHESPV0275 ERR1439066 PHESPV0277 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439066 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439066 f5d83a8de14f2fb46f7b8bb41ab5fded;8eaa74f14ec9a9bf54157f09822578ce 1313 178687027 a09cf9d1f30c5ce130fef5fdbb522858;94444f154e1058128c81912a4bc21d0f SAMEA4023335 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439066/ERR1439066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439066/ERR1439066_2.fastq.gz 2192669 WGS PHESPV0277 RANDOM 119961648;123184232 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7f7ad52194e36bf90e40548884403df8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439066/ERR1439066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439066/ERR1439066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439066/PHESPV0277.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439066/PHESPV0277.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439066/ERR1439066_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439066/ERR1439066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439066/PHESPV0277.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439066/PHESPV0277.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126874777;130021883 ERS1194445 ERX1509444 GENOMIC 435508791 2016-06-10 PHESPV0277 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439066/PHESPV0277.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439066/PHESPV0277.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439066 PHESPV0277 ERR1439073 PHESPV0284 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439073 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439073 b7040d8e586d39c3d3c49a48de8e23b9;68ff0eb7c665603347abe50151301d8c 1313 127320905 619e850647473b32d06592f77335961a;1fffa4662df85c35076521281b3e1f37 SAMEA4023342 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439073/ERR1439073_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439073/ERR1439073_2.fastq.gz 1519320 WGS PHESPV0284 RANDOM 83246641;89430339 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eaeb2af5b59ad99cb9c10f14aa499c66 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439073/ERR1439073_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439073/ERR1439073_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439073/PHESPV0284.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439073/PHESPV0284.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439073/ERR1439073_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439073/ERR1439073_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439073/PHESPV0284.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439073/PHESPV0284.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88327236;94431456 ERS1194452 ERX1509451 GENOMIC 301416510 2016-06-10 PHESPV0284 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439073/PHESPV0284.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439073/PHESPV0284.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439073 PHESPV0284 ERR1439072 PHESPV0283 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439072 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439072 6e4cc1d12c75918b0eec99175c4ccdfd;70fdc8bb5598bc8acc31420aadb0e04c 1313 136797919 2c74b4e7d26c25e3a192d9ce83ce1e90;233f9a9d96eb47c6bfd1f1eff399395d SAMEA4023341 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439072/ERR1439072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439072/ERR1439072_2.fastq.gz 1146566 WGS PHESPV0283 RANDOM 82194135;87787653 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3178c79359d7ed9a336d674e2a48f340 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439072/ERR1439072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439072/ERR1439072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439072/PHESPV0283.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439072/PHESPV0283.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439072/ERR1439072_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439072/ERR1439072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439072/PHESPV0283.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439072/PHESPV0283.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86081899;91672233 ERS1194451 ERX1509450 GENOMIC 224291216 2016-06-10 PHESPV0283 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439072/PHESPV0283.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439072/PHESPV0283.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439072 PHESPV0283 ERR1439076 PHESPV0287 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439076 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439076 5b943979e9ef3df11a526624cc86de2f;abd5c8e931bfd8e0e71e5a863b75ab3a 1313 144760800 ab2e66dcfbece9d80b05a8f14d4cafbc;36f956d10940bf04a5609fb0c36f6781 SAMEA4023345 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439076/ERR1439076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439076/ERR1439076_2.fastq.gz 1784810 WGS PHESPV0287 RANDOM 97836983;101088870 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c11f1fbcdbac196030e3b2d3848fefbf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439076/ERR1439076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439076/ERR1439076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439076/PHESPV0287.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439076/PHESPV0287.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439076/ERR1439076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439076/ERR1439076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439076/PHESPV0287.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439076/PHESPV0287.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103569830;106767692 ERS1194455 ERX1509454 GENOMIC 354599552 2016-06-10 PHESPV0287 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439076/PHESPV0287.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439076/PHESPV0287.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439076 PHESPV0287 ERR1439078 PHESPV0289 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439078 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439078 8a6853860aac10376616558c89115533;ad243d65f75f6b1c60ef2c9907ee8f3d 1313 150546991 44120b64f3735cedfcee0857464a1028;c193793828e7143ef04cd64f15051e2d SAMEA4023347 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439078/ERR1439078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439078/ERR1439078_2.fastq.gz 1848202 WGS PHESPV0289 RANDOM 101774851;105178513 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 58a927d4cfebcf0e985339eb81ce84dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439078/ERR1439078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439078/ERR1439078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439078/PHESPV0289.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439078/PHESPV0289.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439078/ERR1439078_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439078/ERR1439078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439078/PHESPV0289.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439078/PHESPV0289.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107726531;111073776 ERS1194457 ERX1509456 GENOMIC 367150846 2016-06-10 PHESPV0289 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439078/PHESPV0289.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439078/PHESPV0289.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439078 PHESPV0289 ERR1439089 PHESPV0300 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439089 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439089 cd4020aa4eaca7078ac3ff3b8df221d2;3b96bbd777e538c4126f4067a0de189e 1313 78728809 31fae79f0a27766ffb5cd5dbb2b43c35;61c07b2fdeed0aca90e8d02e49b6d148 SAMEA4023358 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439089/ERR1439089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439089/ERR1439089_2.fastq.gz 958366 WGS PHESPV0300 RANDOM 52348526;55423355 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d026b10fa87c7fbd2a5dca286a90f66c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439089/ERR1439089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439089/ERR1439089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439089/PHESPV0300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439089/PHESPV0300.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439089/ERR1439089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439089/ERR1439089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439089/PHESPV0300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439089/PHESPV0300.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55671951;58680681 ERS1194468 ERX1509467 GENOMIC 190454845 2016-06-10 PHESPV0300 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439089/PHESPV0300.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439089/PHESPV0300.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439089 PHESPV0300 ERR1439079 PHESPV0290 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439079 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439079 056fcff772fa49e0f59c69b2a75bbf58;fe533ffacffc63f8475f431b5044d00e 1313 130088493 e48eebdbe7037b75109eb9a647dc5d8d;8b256778652b382be5b4a0d986fe9e61 SAMEA4023348 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439079/ERR1439079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439079/ERR1439079_2.fastq.gz 1593556 WGS PHESPV0290 RANDOM 87311994;90025501 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6c13b0fe8b60b2edd7f1bb4c9292da4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439079/ERR1439079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439079/ERR1439079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439079/PHESPV0290.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439079/PHESPV0290.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439079/ERR1439079_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439079/ERR1439079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439079/PHESPV0290.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439079/PHESPV0290.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92572229;95300725 ERS1194458 ERX1509457 GENOMIC 312152701 2016-06-10 PHESPV0290 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439079/PHESPV0290.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439079/PHESPV0290.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439079 PHESPV0290 ERR1439088 PHESPV0299 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439088 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439088 8a0e9ffcf0d5dfbf2f17c67974b08a90;fccb78b73db1e6c3a78b624a38c0c630 1313 121369295 37fe9e7aca83c717440b571d4d8363fb;58720870751225e6d93d779a66f8be77 SAMEA4023357 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439088/ERR1439088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439088/ERR1439088_2.fastq.gz 1014788 WGS PHESPV0299 RANDOM 72448679;78548283 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a0dd600a24447cf9f2d616501e4579e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439088/ERR1439088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439088/ERR1439088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439088/PHESPV0299.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439088/PHESPV0299.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439088/ERR1439088_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439088/ERR1439088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439088/PHESPV0299.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439088/PHESPV0299.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75951564;82041493 ERS1194467 ERX1509466 GENOMIC 198449067 2016-06-10 PHESPV0299 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439088/PHESPV0299.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439088/PHESPV0299.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439088 PHESPV0299 ERR1439081 PHESPV0292 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439081 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439081 8faaa5deaef8245bccb24cb9cb169b12;0465162adfb4a9632d2fe27d936d4d06 1313 113451882 1a1ae27136c82d3673ba6e064f859894;2fdbb73d6904dd8a5dc7745534e39367 SAMEA4023350 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439081/ERR1439081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439081/ERR1439081_2.fastq.gz 1371940 WGS PHESPV0292 RANDOM 75893174;79347631 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a8b19ba5161e02f09dd9e776e38e9dc6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439081/ERR1439081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439081/ERR1439081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439081/PHESPV0292.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439081/PHESPV0292.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439081/ERR1439081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439081/ERR1439081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439081/PHESPV0292.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439081/PHESPV0292.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80436776;83811207 ERS1194460 ERX1509459 GENOMIC 272248282 2016-06-10 PHESPV0292 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439081/PHESPV0292.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439081/PHESPV0292.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439081 PHESPV0292 ERR1439080 PHESPV0291 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439080 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439080 8acf67c57464c319d1f955d563d30740;5dea98f4508d06b4d5f352d4b05548e7 1313 147336374 416001b526d950421043494b8cef2711;145a365a40e281eded672ca3a5f792af SAMEA4023349 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439080/ERR1439080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439080/ERR1439080_2.fastq.gz 1809513 WGS PHESPV0291 RANDOM 99542207;102907816 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 435dea33d73c2f9299d82ac2ab73cde3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439080/ERR1439080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439080/ERR1439080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439080/PHESPV0291.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439080/PHESPV0291.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439080/ERR1439080_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439080/ERR1439080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439080/PHESPV0291.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439080/PHESPV0291.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105354841;108665165 ERS1194459 ERX1509458 GENOMIC 359630652 2016-06-10 PHESPV0291 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439080/PHESPV0291.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439080/PHESPV0291.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439080 PHESPV0291 ERR1439098 PHESPV0309 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439098 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439098 af9ae84510e42bc3e9618d38af12606b;a7e9aa36399db26b4dccd5ced42c5514 1313 152449100 c001b65c11f40fdcba6f2721669c29eb;6a5c90bf7defb4d0b71484f883e53e56 SAMEA4023367 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439098/ERR1439098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439098/ERR1439098_2.fastq.gz 1875284 WGS PHESPV0309 RANDOM 102994471;106275543 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 19126b02d77f417e9469f050ef7d1dad ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439098/ERR1439098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439098/ERR1439098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439098/PHESPV0309.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439098/PHESPV0309.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439098/ERR1439098_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439098/ERR1439098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439098/PHESPV0309.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439098/PHESPV0309.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109027828;112255300 ERS1194477 ERX1509476 GENOMIC 372685594 2016-06-10 PHESPV0309 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439098/PHESPV0309.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439098/PHESPV0309.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439098 PHESPV0309 ERR1439114 PHESPV0325 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439114 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439114 caf0692788df26cd9eb2ccc597b0b9bb;a7142f0d0b80b06c6b9633dc29a44797 1313 149186854 1b0fd88400e9f1c22c870f4c72818520;91bbce26c4c896c44e1e235df1151250 SAMEA4023383 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439114/ERR1439114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439114/ERR1439114_2.fastq.gz 1827821 WGS PHESPV0325 RANDOM 100563247;104275533 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 15a1b7ffc5c0e5ca5a3df0ea97338b7a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439114/ERR1439114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439114/ERR1439114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439114/PHESPV0325.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439114/PHESPV0325.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439114/ERR1439114_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439114/ERR1439114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439114/PHESPV0325.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439114/PHESPV0325.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106442013;110092180 ERS1194493 ERX1509492 GENOMIC 363151756 2016-06-10 PHESPV0325 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439114/PHESPV0325.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439114/PHESPV0325.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439114 PHESPV0325 ERR1439115 PHESPV0326 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439115 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439115 6b0a93eb395df1f172e46c0c296bb10a;23d3ead88fd9c03e78abc2a22754f3fa 1313 69253566 a63c09cb0a85d70c7d1ddab06240a5af;379544d56d15ee323fe0972384198251 SAMEA4023384 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439115/ERR1439115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439115/ERR1439115_2.fastq.gz 848694 WGS PHESPV0326 RANDOM 46560244;48141759 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 46feadd95ef815685e6636481ec43ce3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439115/ERR1439115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439115/ERR1439115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439115/PHESPV0326.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439115/PHESPV0326.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439115/ERR1439115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439115/ERR1439115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439115/PHESPV0326.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439115/PHESPV0326.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49560671;51080402 ERS1194494 ERX1509493 GENOMIC 168523069 2016-06-10 PHESPV0326 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439115/PHESPV0326.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439115/PHESPV0326.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439115 PHESPV0326 ERR1439108 PHESPV0319 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439108 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439108 b2fb791cb8ba1b4f23fb835a143a7c0d;1a0abf5dfaf21235d028223e4272a981 1313 115518219 f9d2c27043ea181326efb7e6994dd17d;9d7bcf1191294ea41ac0200e8f4258fd SAMEA4023377 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439108/ERR1439108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439108/ERR1439108_2.fastq.gz 1413558 WGS PHESPV0319 RANDOM 77836481;80659626 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a65c3f9a67a8d655d41751ad91c92b85 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439108/ERR1439108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439108/ERR1439108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439108/PHESPV0319.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439108/PHESPV0319.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439108/ERR1439108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439108/ERR1439108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439108/PHESPV0319.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439108/PHESPV0319.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82533829;85294177 ERS1194487 ERX1509486 GENOMIC 280801889 2016-06-10 PHESPV0319 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439108/PHESPV0319.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439108/PHESPV0319.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439108 PHESPV0319 ERR1439099 PHESPV0310 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439099 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439099 82a0a90ecaa2ddb459e350528104cce5;6c1795cb1e511557081a01f7d5d15b63 1313 109690093 d89e52fee1ff1b70c65e5b01ed05609d;cd15a69c84d7870f291efaac95aa2042 SAMEA4023368 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439099/ERR1439099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439099/ERR1439099_2.fastq.gz 1339928 WGS PHESPV0310 RANDOM 73966667;76699382 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 01203cd8a4c480fd55b800acbc4300fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439099/ERR1439099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439099/ERR1439099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439099/PHESPV0310.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439099/PHESPV0310.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439099/ERR1439099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439099/ERR1439099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439099/PHESPV0310.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439099/PHESPV0310.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78445871;81116193 ERS1194478 ERX1509477 GENOMIC 266102266 2016-06-10 PHESPV0310 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439099/PHESPV0310.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439099/PHESPV0310.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439099 PHESPV0310 ERR1439119 PHESPV0330 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439119 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439119 bc829772b2e02205d697ff6966942e2b;10ea690a7b86065328a8d62e7da6f078 1313 137498244 1fc106dd3b78aec817b3f9250ab6c7f2;14d4f1c2055b309618e1744504c5326f SAMEA4023388 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439119/ERR1439119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439119/ERR1439119_2.fastq.gz 1672750 WGS PHESPV0330 RANDOM 92161744;95823716 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cbc46f65fef79b829699cdbcc29c1ce0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439119/ERR1439119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439119/ERR1439119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439119/PHESPV0330.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439119/PHESPV0330.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439119/ERR1439119_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439119/ERR1439119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439119/PHESPV0330.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439119/PHESPV0330.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97588212;101183207 ERS1194498 ERX1509497 GENOMIC 331944867 2016-06-10 PHESPV0330 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439119/PHESPV0330.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439119/PHESPV0330.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439119 PHESPV0330 ERR1439122 PHESPV0333 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439122 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439122 1fc80417e5051e136c8cceaedf1ba505;03dc4af37eff117212a21c09f3d13666 1313 132011571 5e58901253e4b9943775577996452209;96142d91b7c9f9b161aaf17b1e1a7de4 SAMEA4023391 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439122/ERR1439122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439122/ERR1439122_2.fastq.gz 1614538 WGS PHESPV0333 RANDOM 88839728;91631569 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 75166fa60d9bf16aa4d044ccc10f0a5d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439122/ERR1439122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439122/ERR1439122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439122/PHESPV0333.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439122/PHESPV0333.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439122/ERR1439122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439122/ERR1439122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439122/PHESPV0333.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439122/PHESPV0333.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94105270;96822360 ERS1194501 ERX1509500 GENOMIC 320628365 2016-06-10 PHESPV0333 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439122/PHESPV0333.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439122/PHESPV0333.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439122 PHESPV0333 ERR1439125 PHESPV0336 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439125 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439125 4ab70e7ce41fab265392a2147b7e1673;6357bb2b471ad625558a3976270fb473 1313 222687432 6ef2b3e564ffac31aea292d4e48a24ac;ecb5d185db61b40c04717fa05e7150ad SAMEA4023394 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439125/ERR1439125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439125/ERR1439125_2.fastq.gz 2748002 WGS PHESPV0336 RANDOM 151014982;155345904 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 132de9b00861e059ce1c6454a53ed001 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439125/ERR1439125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439125/ERR1439125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439125/PHESPV0336.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439125/PHESPV0336.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439125/ERR1439125_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439125/ERR1439125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439125/PHESPV0336.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439125/PHESPV0336.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 159306961;163584821 ERS1194504 ERX1509503 GENOMIC 546170721 2016-06-10 PHESPV0336 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439125/PHESPV0336.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439125/PHESPV0336.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439125 PHESPV0336 ERR1439126 PHESPV0337 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439126 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439126 01c1b9bbaec267fb425e8e543ed9e803;0c46cd1468cde4ea6af9c866b6d90eb5 1313 124876480 944367df67458b991d4d0bddacc1265b;caa5d03c28d34f1c981e59851fab97a0 SAMEA4023395 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439126/ERR1439126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439126/ERR1439126_2.fastq.gz 1052755 WGS PHESPV0337 RANDOM 75728750;79612027 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline de1bebd93542512dbce7d79e30dfa5f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439126/ERR1439126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439126/ERR1439126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439126/PHESPV0337.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439126/PHESPV0337.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439126/ERR1439126_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439126/ERR1439126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439126/PHESPV0337.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439126/PHESPV0337.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79332571;83219124 ERS1194505 ERX1509504 GENOMIC 206090853 2016-06-10 PHESPV0337 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439126/PHESPV0337.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439126/PHESPV0337.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439126 PHESPV0337 ERR1439128 PHESPV0339 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439128 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439128 aa3565c93fba64a3bd6321d6208ee754;57cfa0ed023a43a92bfe2b699e78a5e4 1313 114302244 f90a4de60df52878895d92bd4ec65253;bdccaa0c18a1ddbeb9af6321b890a533 SAMEA4023397 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439128/ERR1439128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439128/ERR1439128_2.fastq.gz 1388659 WGS PHESPV0339 RANDOM 76005369;80941658 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 48752b31a650bffc2b39e58a4c2911bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439128/ERR1439128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439128/ERR1439128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439128/PHESPV0339.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439128/PHESPV0339.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439128/ERR1439128_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439128/ERR1439128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439128/PHESPV0339.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439128/PHESPV0339.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80599763;85457041 ERS1194507 ERX1509506 GENOMIC 276019146 2016-06-10 PHESPV0339 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439128/PHESPV0339.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439128/PHESPV0339.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439128 PHESPV0339 ERR1439133 PHESPV0344 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439133 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439133 8a0e9a9fb65841895560fe8361d0847d;5ca0c7d1c630382b6b0e8e59602b0349 1313 201757282 ada240603280463ac94761a8c035767c;c0fcd0ffb687a750bc0e876e4b4db5c1 SAMEA4023402 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439133/ERR1439133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439133/ERR1439133_2.fastq.gz 2482027 WGS PHESPV0344 RANDOM 136728879;140785589 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5b97a4bfeb8fce76b58ee5b7d8bb199f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439133/ERR1439133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439133/ERR1439133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439133/PHESPV0344.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439133/PHESPV0344.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439133/ERR1439133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439133/ERR1439133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439133/PHESPV0344.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439133/PHESPV0344.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 144320242;148322803 ERS1194512 ERX1509511 GENOMIC 493249393 2016-06-10 PHESPV0344 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439133/PHESPV0344.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439133/PHESPV0344.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439133 PHESPV0344 ERR1439134 PHESPV0345 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439134 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439134 bbcd86ebacb8bb1e182e9987b10fda56;0024658e334a44d078d33ab7abf62d19 1313 96242585 1fbac3258a88c3a656ba7def7e0026a7;540b67e58880840febab5e7ad5fc7eb8 SAMEA4023403 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439134/ERR1439134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439134/ERR1439134_2.fastq.gz 1074761 WGS PHESPV0345 RANDOM 63420369;65979242 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d291e44a21d05034ca7a7575b3154308 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439134/ERR1439134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439134/ERR1439134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439134/PHESPV0345.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439134/PHESPV0345.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439134/ERR1439134_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439134/ERR1439134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439134/PHESPV0345.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439134/PHESPV0345.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67105681;69622013 ERS1194513 ERX1509512 GENOMIC 212587119 2016-06-10 PHESPV0345 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439134/PHESPV0345.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439134/PHESPV0345.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439134 PHESPV0345 ERR1439140 PHESPV0351 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439140 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439140 13e1d135e49dacf06b77db033e5ea446;64066adbe9a9117a669b305b44b6f280 1313 126860138 21e0d463ddf442ba55648e650bcf8609;fec18447d8c30f7708fd36e234b03cd4 SAMEA4023409 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439140/ERR1439140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439140/ERR1439140_2.fastq.gz 1555291 WGS PHESPV0351 RANDOM 85655835;88503085 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0230bb7237cc4df67d067a49eccd6d5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439140/ERR1439140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439140/ERR1439140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439140/PHESPV0351.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439140/PHESPV0351.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439140/ERR1439140_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439140/ERR1439140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439140/PHESPV0351.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439140/PHESPV0351.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90760944;93543354 ERS1194519 ERX1509518 GENOMIC 309003200 2016-06-10 PHESPV0351 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439140/PHESPV0351.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439140/PHESPV0351.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439140 PHESPV0351 ERR1439143 PHESPV0354 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439143 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439143 a394750d528f8c87c1686afe5ba0d2b0;f03a29c0bedd550708762f7a64ce0b5e 1313 168497347 4a399761f716aa09b0121f4891665b0c;18db6069645fac473f711cadf3612e5d SAMEA4023412 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439143/ERR1439143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439143/ERR1439143_2.fastq.gz 2064067 WGS PHESPV0354 RANDOM 113684673;118021032 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d11d573aa6b34c953f6683e78d2c6a12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439143/ERR1439143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439143/ERR1439143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439143/PHESPV0354.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439143/PHESPV0354.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439143/ERR1439143_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439143/ERR1439143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439143/PHESPV0354.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439143/PHESPV0354.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120186171;124456732 ERS1194522 ERX1509521 GENOMIC 410174399 2016-06-10 PHESPV0354 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439143/PHESPV0354.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439143/PHESPV0354.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439143 PHESPV0354 ERR1439144 PHESPV0355 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439144 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439144 3f048c62fd87be9f562d659c4ecff4ff;d8efe50ec2030e19e043800d597caa58 1313 26133074 04ddd975db94a1930e9b3d2de7372d94;04c0d9d14e560c541a68eeca67db3059 SAMEA4023413 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439144/ERR1439144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439144/ERR1439144_2.fastq.gz 319160 WGS PHESPV0355 RANDOM 17275198;18134774 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62a95d43d3356c5cd02b8a226592562e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439144/ERR1439144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439144/ERR1439144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439144/PHESPV0355.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439144/PHESPV0355.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439144/ERR1439144_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439144/ERR1439144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439144/PHESPV0355.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439144/PHESPV0355.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 18541272;19367779 ERS1194523 ERX1509522 GENOMIC 63439436 2016-06-10 PHESPV0355 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439144/PHESPV0355.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439144/PHESPV0355.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439144 PHESPV0355 ERR1439145 PHESPV0356 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439145 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439145 a5e9fa7787074dbed59547e6a402371e;6f34a9a8295ccb9894da044677f67189 1313 108107743 4ec03f15c4a0a9c08a4793cf18eee645;61dbf8475263814b680035395b2c0a71 SAMEA4023414 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439145/ERR1439145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439145/ERR1439145_2.fastq.gz 1209234 WGS PHESPV0356 RANDOM 71207729;73536111 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc86ca872ccae9868abeea030068a920 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439145/ERR1439145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439145/ERR1439145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439145/PHESPV0356.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439145/PHESPV0356.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439145/ERR1439145_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439145/ERR1439145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439145/PHESPV0356.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439145/PHESPV0356.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75288884;77591623 ERS1194524 ERX1509523 GENOMIC 239264377 2016-06-10 PHESPV0356 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439145/PHESPV0356.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439145/PHESPV0356.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439145 PHESPV0356 ERR1439153 PHESPV0364 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439153 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439153 fd0beeea753c6524ce80901db26261f5;1fd2052fddc0652cde7f8196cc8b858f 1313 169197301 728dddad2f127e0cdd1eb78a39305bd2;2b6418b85af2b4dd6580115e9661dbdd SAMEA4023422 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439153/ERR1439153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439153/ERR1439153_2.fastq.gz 1932836 WGS PHESPV0364 RANDOM 113917661;115964408 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f38bbd9fc8c70b11664b4915b9f6bc67 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439153/ERR1439153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439153/ERR1439153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439153/PHESPV0364.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439153/PHESPV0364.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439153/ERR1439153_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439153/ERR1439153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439153/PHESPV0364.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439153/PHESPV0364.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120161615;122208582 ERS1194532 ERX1509531 GENOMIC 383545115 2016-06-10 PHESPV0364 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439153/PHESPV0364.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439153/PHESPV0364.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439153 PHESPV0364 ERR1439156 PHESPV0367 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439156 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439156 d474447beec1b33628df86b923249ea4;bd59680b7d20e152e2b8231db11809a6 1313 106082760 5a070889f5e3c96be0c6107845a624f7;2542005e56bee1ff5ac5431b96aef64d SAMEA4023425 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439156/ERR1439156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439156/ERR1439156_2.fastq.gz 1208249 WGS PHESPV0367 RANDOM 71256067;72377490 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dafb0380dc49b5189721ac837dbe6db0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439156/ERR1439156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439156/ERR1439156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439156/PHESPV0367.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439156/PHESPV0367.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439156/ERR1439156_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439156/ERR1439156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439156/PHESPV0367.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439156/PHESPV0367.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75369970;76490181 ERS1194535 ERX1509534 GENOMIC 239493609 2016-06-10 PHESPV0367 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439156/PHESPV0367.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439156/PHESPV0367.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439156 PHESPV0367 ERR1439149 PHESPV0360 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439149 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439149 de3b22fce86397baf1dbbb8cd5e0e160;adac539fff7263ff6f76ac30f9b9beb2 1313 116034853 4c5daa90f8bb852a67533b06ca11cfc6;d04d90b414a56ea2131f7dbc60b8a24e SAMEA4023418 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439149/ERR1439149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439149/ERR1439149_2.fastq.gz 975843 WGS PHESPV0360 RANDOM 70249825;74283935 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline da2457ad260703e99f18ef92d5da2acb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439149/ERR1439149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439149/ERR1439149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439149/PHESPV0360.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439149/PHESPV0360.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439149/ERR1439149_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439149/ERR1439149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439149/PHESPV0360.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439149/PHESPV0360.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73610378;77644194 ERS1194528 ERX1509527 GENOMIC 191105193 2016-06-10 PHESPV0360 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439149/PHESPV0360.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439149/PHESPV0360.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439149 PHESPV0360 ERR1439158 PHESPV0369 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439158 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439158 1992db28c8e35827561e244bef970194;105d7cec43adfd9a33c623ac0e43b478 1313 168943353 2881df5d496bf0276b5ece19a40c739c;3925df74ea18cdf9ec23563b045c2763 SAMEA4023427 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439158/ERR1439158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439158/ERR1439158_2.fastq.gz 1925379 WGS PHESPV0369 RANDOM 113566140;115439358 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ced2892cc451afa6b7e2a904f243a358 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439158/ERR1439158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439158/ERR1439158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439158/PHESPV0369.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439158/PHESPV0369.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439158/ERR1439158_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439158/ERR1439158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439158/PHESPV0369.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439158/PHESPV0369.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119758651;121633730 ERS1194537 ERX1509536 GENOMIC 381824472 2016-06-10 PHESPV0369 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439158/PHESPV0369.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439158/PHESPV0369.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439158 PHESPV0369 ERR1439161 PHESPV0372 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439161 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439161 96fdab12bfb537edd811dcc94323d271;4283b6bdc2b95e0bbfbea4b9cda54101 1313 186537960 730075990e88ed53ed8cbdd1a8f49c4c;4719b984451be6ca357b7af6751a1dde SAMEA4023430 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439161/ERR1439161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439161/ERR1439161_2.fastq.gz 2130738 WGS PHESPV0372 RANDOM 125773709;127448600 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 56d52a1a729b2cd2f32ca4b845c66e29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439161/ERR1439161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439161/ERR1439161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439161/PHESPV0372.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439161/PHESPV0372.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439161/ERR1439161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439161/ERR1439161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439161/PHESPV0372.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439161/PHESPV0372.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132528172;134213265 ERS1194540 ERX1509539 GENOMIC 422739679 2016-06-10 PHESPV0372 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439161/PHESPV0372.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439161/PHESPV0372.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439161 PHESPV0372 ERR1439163 PHESPV0374 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439163 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439163 a48874ff4295fc247217d0bcd9c22573;253e9552061f90ea0119adf0c196f40a 1313 175479451 b27c32fa6d701150b108e3cd34f008a6;4b812af31740631ad47b6163bdc9410a SAMEA4023432 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439163/ERR1439163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439163/ERR1439163_2.fastq.gz 2007477 WGS PHESPV0374 RANDOM 117937155;118978457 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d0478886987949197f86991e0eb9048 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439163/ERR1439163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439163/ERR1439163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439163/PHESPV0374.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439163/PHESPV0374.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439163/ERR1439163_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439163/ERR1439163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439163/PHESPV0374.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439163/PHESPV0374.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124330761;125375319 ERS1194542 ERX1509541 GENOMIC 398118906 2016-06-10 PHESPV0374 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439163/PHESPV0374.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439163/PHESPV0374.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439163 PHESPV0374 ERR1439164 PHESPV0375 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439164 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439164 e8979196f66b2da3f079648934c26d75;77691de4789916d4c47183280d98b6b0 1313 186585794 66ce887a62622ee4ab8635816c895353;0ef3248d7ab1673eb23328abb65c1582 SAMEA4023433 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439164/ERR1439164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439164/ERR1439164_2.fastq.gz 2112480 WGS PHESPV0375 RANDOM 124739359;128239807 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b28f69c8ce91c489197f5741ce3a8fa5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439164/ERR1439164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439164/ERR1439164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439164/PHESPV0375.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439164/PHESPV0375.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439164/ERR1439164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439164/ERR1439164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439164/PHESPV0375.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439164/PHESPV0375.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131442335;134923528 ERS1194543 ERX1509542 GENOMIC 418515250 2016-06-10 PHESPV0375 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439164/PHESPV0375.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439164/PHESPV0375.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439164 PHESPV0375 ERR1439165 PHESPV0376 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439165 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439165 c1e874a52f15b252a9ff5cc200380483;00aabd3d72527d0b5ac4a89c4d67180e 1313 178083658 58752bf088f2c1a40dc416138a3a7ec7;190a37ff90bdc479e3a0c9a71b30ddb1 SAMEA4023434 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439165/ERR1439165_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439165/ERR1439165_2.fastq.gz 2035549 WGS PHESPV0376 RANDOM 119849761;121560227 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b57126f6e96d0300a7cb561e0e2bdc31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439165/ERR1439165_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439165/ERR1439165_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439165/PHESPV0376.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439165/PHESPV0376.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439165/ERR1439165_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439165/ERR1439165_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439165/PHESPV0376.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439165/PHESPV0376.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126325021;128036635 ERS1194544 ERX1509543 GENOMIC 403696512 2016-06-10 PHESPV0376 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439165/PHESPV0376.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439165/PHESPV0376.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439165 PHESPV0376 ERR1439166 PHESPV0377 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439166 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439166 7e56972862ae8748a3b79501c1402011;55e23572d8da4ceeda2835d854580a92 1313 165852182 f57eaa942a2680c3a7beebeeeb58161a;3b555dc80518cb0f3aa69197d22b4b24 SAMEA4023435 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439166/ERR1439166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439166/ERR1439166_2.fastq.gz 1856285 WGS PHESPV0377 RANDOM 109835815;114232165 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c98007d3a1ad63a837256c7d3b3b40f3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439166/ERR1439166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439166/ERR1439166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439166/PHESPV0377.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439166/PHESPV0377.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439166/ERR1439166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439166/ERR1439166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439166/PHESPV0377.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439166/PHESPV0377.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115821961;120181941 ERS1194545 ERX1509544 GENOMIC 367517568 2016-06-10 PHESPV0377 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439166/PHESPV0377.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439166/PHESPV0377.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439166 PHESPV0377 ERR1439178 PHESPV0389 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439178 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439178 001e55021f5e36a1ee49313d4ff776cc;92761e41edf2707054fe1ab46147ae23 1313 129691809 48d553cd17d1ef0076a18d6c8f954226;6914db15edd0663d5ec398bf0663de1f SAMEA4023447 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439178/ERR1439178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439178/ERR1439178_2.fastq.gz 1482834 WGS PHESPV0389 RANDOM 87213543;88846843 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aff994fdb8edaeda9d6989516228c627 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439178/ERR1439178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439178/ERR1439178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439178/PHESPV0389.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439178/PHESPV0389.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439178/ERR1439178_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439178/ERR1439178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439178/PHESPV0389.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439178/PHESPV0389.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92137289;93754975 ERS1194557 ERX1509556 GENOMIC 294218021 2016-06-10 PHESPV0389 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439178/PHESPV0389.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439178/PHESPV0389.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439178 PHESPV0389 ERR1439176 PHESPV0387 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439176 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439176 072c18a964535d3cb1b87385b18ee289;931d70676ad0917f863c956e8e12a738 1313 137442983 e4397214b6c9efccdb894d66cdf8e3c5;f6f4cd0443b4868861719a15f18d3d8c SAMEA4023445 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439176/ERR1439176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439176/ERR1439176_2.fastq.gz 1565585 WGS PHESPV0387 RANDOM 92179412;93527459 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c585548f8401d67c293f253af3ca03f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439176/ERR1439176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439176/ERR1439176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439176/PHESPV0387.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439176/PHESPV0387.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439176/ERR1439176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439176/ERR1439176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439176/PHESPV0387.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439176/PHESPV0387.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97344385;98688341 ERS1194555 ERX1509554 GENOMIC 310373362 2016-06-10 PHESPV0387 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439176/PHESPV0387.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439176/PHESPV0387.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439176 PHESPV0387 ERR1439191 PHESPV0402 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439191 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439191 bff4f822f95ed804e8bbe5b6ad03ac98;0f40ea8f8a8dd8cda1a6677b416dd3f7 1313 97664111 66212dda13a8db6b99dc13c7eb1683ec;bf547245b9c77b8b5f5ccafcd8499624 SAMEA4023460 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439191/ERR1439191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439191/ERR1439191_2.fastq.gz 1110104 WGS PHESPV0402 RANDOM 65321152;66588329 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 016424a198ef7ad5dc14106d733b4427 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439191/ERR1439191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439191/ERR1439191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439191/PHESPV0402.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439191/PHESPV0402.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439191/ERR1439191_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439191/ERR1439191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439191/PHESPV0402.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439191/PHESPV0402.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69158164;70408570 ERS1194570 ERX1509569 GENOMIC 220062128 2016-06-10 PHESPV0402 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439191/PHESPV0402.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439191/PHESPV0402.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439191 PHESPV0402 ERR1439187 PHESPV0398 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439187 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439187 7a329220d471c02d7730f7253bb7fe64;1322f3e0cd94dc1c89574c5e52ff3ef1 1313 232312501 3c7dd9ad478a553bd9e1acabffa83e43;b920cb87fcd51f095b88fbfbbe2c1f26 SAMEA4023456 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439187/ERR1439187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439187/ERR1439187_2.fastq.gz 2856493 WGS PHESPV0398 RANDOM 156827144;161816607 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5d9c1d5062b032e7e7cec9232443657b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439187/ERR1439187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439187/ERR1439187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439187/PHESPV0398.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439187/PHESPV0398.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439187/ERR1439187_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439187/ERR1439187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439187/PHESPV0398.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439187/PHESPV0398.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 165585621;170543258 ERS1194566 ERX1509565 GENOMIC 558362599 2016-06-10 PHESPV0398 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439187/PHESPV0398.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439187/PHESPV0398.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439187 PHESPV0398 ERR1439192 PHESPV0403 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439192 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439192 8740b90c72a4f1f19beedb5df59e8cee;5bf61df06ffd4f46c15ea3676c1eb7e6 1313 235167160 c128cf4581c54f098ccf25a351c87ceb;1b34e1ddb5aed99e3898ca196200c680 SAMEA4023461 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439192/ERR1439192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439192/ERR1439192_2.fastq.gz 2857612 WGS PHESPV0403 RANDOM 157599034;163912185 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0ba0347ce64ad1271795ad44fbaf9a2b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439192/ERR1439192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439192/ERR1439192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439192/PHESPV0403.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439192/PHESPV0403.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439192/ERR1439192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439192/ERR1439192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439192/PHESPV0403.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439192/PHESPV0403.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 166343519;172579830 ERS1194571 ERX1509570 GENOMIC 556735595 2016-06-10 PHESPV0403 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439192/PHESPV0403.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439192/PHESPV0403.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439192 PHESPV0403 ERR1439194 PHESPV0405 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439194 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439194 e0ee7e1cdd593ff7d6a4bb6e1cd59127;13ccd4a1e02fbc2b59771a9b00fe1b27 1313 77998198 1b1007b198aa42cf327f30cf35f03a2a;92959773632ada9a9332c7353cdefdf7 SAMEA4023463 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439194/ERR1439194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439194/ERR1439194_2.fastq.gz 884492 WGS PHESPV0405 RANDOM 52270526;52967098 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 621ca03bcf5ab2427d86d3d7e459f67c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439194/ERR1439194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439194/ERR1439194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439194/PHESPV0405.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439194/PHESPV0405.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439194/ERR1439194_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439194/ERR1439194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439194/PHESPV0405.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439194/PHESPV0405.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55373257;56068426 ERS1194573 ERX1509572 GENOMIC 175392637 2016-06-10 PHESPV0405 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439194/PHESPV0405.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439194/PHESPV0405.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439194 PHESPV0405 ERR1439198 PHESPV0409 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439198 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439198 d0f0a30440e503df332bb353235d4bc1;39056633d07bdb734cfe12c3bf0b6e33 1313 115838695 122a391f8cc14ebd421bb77e5a760c7b;d4ac68b63a42f3b74c635e275f5ba7fb SAMEA4023467 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439198/ERR1439198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439198/ERR1439198_2.fastq.gz 1303143 WGS PHESPV0409 RANDOM 76956248;79924670 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ae9f5f0ecaadb8f1d6e22c45ded2ebcb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439198/ERR1439198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439198/ERR1439198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439198/PHESPV0409.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439198/PHESPV0409.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439198/ERR1439198_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439198/ERR1439198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439198/PHESPV0409.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439198/PHESPV0409.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81330359;84260386 ERS1194577 ERX1509576 GENOMIC 257943148 2016-06-10 PHESPV0409 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439198/PHESPV0409.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439198/PHESPV0409.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439198 PHESPV0409 ERR1439195 PHESPV0406 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439195 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439195 f419ed04c0964433c3f5b6f80721e295;3165e9043f9564a75ca93f3c82dad523 1313 235273737 7d8fec63ff1f85629d2a614dd9663f03;fc7ee6df63f069ec461bfbb42cd81aeb SAMEA4023464 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439195/ERR1439195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439195/ERR1439195_2.fastq.gz 2909904 WGS PHESPV0406 RANDOM 159559526;163647307 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9ef8695fd5d2bf0215ec73988628764 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439195/ERR1439195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439195/ERR1439195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439195/PHESPV0406.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439195/PHESPV0406.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439195/ERR1439195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439195/ERR1439195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439195/PHESPV0406.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439195/PHESPV0406.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 168463343;172539619 ERS1194574 ERX1509573 GENOMIC 569534892 2016-06-10 PHESPV0406 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439195/PHESPV0406.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439195/PHESPV0406.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439195 PHESPV0406 ERR1439201 PHESPV0412 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439201 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439201 3575942ae9249f254efb2662715a6374;e6cc82a8cb90a23dea5868637588d194 1313 109679382 2ed80daf1321e6a382eb2fb1362c32bb;fc7ba3fd6e61ac84ef35bec9099c6f0d SAMEA4023470 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439201/ERR1439201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439201/ERR1439201_2.fastq.gz 1250809 WGS PHESPV0412 RANDOM 73288033;73961579 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8d15840ce567a54c566f6b641dc04061 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439201/ERR1439201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439201/ERR1439201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439201/PHESPV0412.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439201/PHESPV0412.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439201/ERR1439201_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439201/ERR1439201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439201/PHESPV0412.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439201/PHESPV0412.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77464610;78135257 ERS1194580 ERX1509579 GENOMIC 247808771 2016-06-10 PHESPV0412 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439201/PHESPV0412.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439201/PHESPV0412.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439201 PHESPV0412 ERR1439204 PHESPV0415 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439204 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439204 b18fea5a92863caa9ae506d7814e59bd;63f9e288e7a2425f28546233ba1cc35c 1313 209167923 ccce0f9c094dd8255ad517dffcd23d98;f1c7f8843c7417916e9746ddff9c0135 SAMEA4023473 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439204/ERR1439204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439204/ERR1439204_2.fastq.gz 2586633 WGS PHESPV0415 RANDOM 142147759;145292125 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b808abd0a33edc7e32c289cd470bf1aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439204/ERR1439204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439204/ERR1439204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439204/PHESPV0415.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439204/PHESPV0415.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439204/ERR1439204_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439204/ERR1439204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439204/PHESPV0415.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439204/PHESPV0415.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 150200349;153318256 ERS1194583 ERX1509582 GENOMIC 506520033 2016-06-10 PHESPV0415 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439204/PHESPV0415.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439204/PHESPV0415.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439204 PHESPV0415 ERR1439206 PHESPV0417 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439206 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439206 9b5a298430b5802e515124c335c53c03;3d7d760e32eabebf59d607a3ed9ebfef 1313 272782473 a6d8c602e8d005ef52c549febb77629f;4d422ead290a2ea748dd294d4b682f8b SAMEA4023475 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439206/ERR1439206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439206/ERR1439206_2.fastq.gz 3324121 WGS PHESPV0417 RANDOM 183004000;190244449 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6246015fc37a46299994179f873c1e4c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439206/ERR1439206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439206/ERR1439206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439206/PHESPV0417.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439206/PHESPV0417.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439206/ERR1439206_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439206/ERR1439206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439206/PHESPV0417.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439206/PHESPV0417.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 193062953;200304826 ERS1194585 ERX1509584 GENOMIC 648263604 2016-06-10 PHESPV0417 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439206/PHESPV0417.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439206/PHESPV0417.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439206 PHESPV0417 ERR1439222 PHESPV0433 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439222 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439222 4dc8e4785d7563a31c9282d6c56ff0b1;8dc4e994d955ce6297941896760bba44 1313 110521118 53739a8338eddbfc38ab251a162f4d12;7b47228158d970ea585f64610b1357e5 SAMEA4023491 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439222/ERR1439222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439222/ERR1439222_2.fastq.gz 1262685 WGS PHESPV0433 RANDOM 73934297;74123145 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ef52bdf871c82823eefc5afceb92d22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439222/ERR1439222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439222/ERR1439222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439222/PHESPV0433.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439222/PHESPV0433.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439222/ERR1439222_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439222/ERR1439222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439222/PHESPV0433.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439222/PHESPV0433.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78154812;78344317 ERS1194601 ERX1509600 GENOMIC 250335383 2016-06-10 PHESPV0433 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439222/PHESPV0433.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439222/PHESPV0433.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439222 PHESPV0433 ERR1439216 PHESPV0427 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439216 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439216 4acfb214c7f0ee3a7f28089f5846d054;b90c6fb6276981b123861cd91a5d3b09 1313 235380205 d09abefdd28375d88926c3f2b4cf8134;5fd4f5c2ec98b301fc9e4898a317426e SAMEA4023485 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439216/ERR1439216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439216/ERR1439216_2.fastq.gz 2917791 WGS PHESPV0427 RANDOM 159769203;163674308 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ae66c6c47ebcbc55af8c8d4cef7af1b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439216/ERR1439216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439216/ERR1439216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439216/PHESPV0427.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439216/PHESPV0427.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439216/ERR1439216_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439216/ERR1439216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439216/PHESPV0427.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439216/PHESPV0427.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 168656090;172548496 ERS1194595 ERX1509594 GENOMIC 571578736 2016-06-10 PHESPV0427 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439216/PHESPV0427.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439216/PHESPV0427.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439216 PHESPV0427 ERR1439209 PHESPV0420 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439209 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439209 4569eaa002d161cab023a67a5ed9583f;f81db8355661ce4816f71a2afbb0418f 1313 87763921 07291d31933c3190c30373170c9346ca;8c5d12c66b788a1a8aff4606a6ab0e0b SAMEA4023478 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439209/ERR1439209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439209/ERR1439209_2.fastq.gz 1002036 WGS PHESPV0420 RANDOM 58940314;59363568 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 33a7226b4dcae1cdf52f91a43f9b3132 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439209/ERR1439209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439209/ERR1439209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439209/PHESPV0420.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439209/PHESPV0420.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439209/ERR1439209_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439209/ERR1439209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439209/PHESPV0420.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439209/PHESPV0420.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62400335;62829887 ERS1194588 ERX1509587 GENOMIC 198633794 2016-06-10 PHESPV0420 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439209/PHESPV0420.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439209/PHESPV0420.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439209 PHESPV0420 ERR1439224 PHESPV0435 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439224 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439224 52c5b86885588ed0968bf9e921ec2d70;06215dd8188a3e4e5dc93a881d7e0f48 1313 79167925 7d0ac1ae750af5630a89f6fd7efc6dfd;cb65e37ab42fbe7ff42e9c52e61d9bc3 SAMEA4023493 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439224/ERR1439224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439224/ERR1439224_2.fastq.gz 883775 WGS PHESPV0435 RANDOM 52299734;54191785 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9145526d7766553e3221b5c4db7426fd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439224/ERR1439224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439224/ERR1439224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439224/PHESPV0435.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439224/PHESPV0435.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439224/ERR1439224_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439224/ERR1439224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439224/PHESPV0435.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439224/PHESPV0435.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55409448;57277855 ERS1194603 ERX1509602 GENOMIC 174871427 2016-06-10 PHESPV0435 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439224/PHESPV0435.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439224/PHESPV0435.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439224 PHESPV0435 ERR1439234 PHESPV0445 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439234 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439234 9dcc31543db7264a6dd13192174bdb96;ef8cd292853115560ecb11f6d74083ac 1313 82451401 33d3ed10f1ee0c51af1e4da5c5b1a625;964b9561b2bff8fe4a37e0fc04ab11ae SAMEA4023503 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439234/ERR1439234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439234/ERR1439234_2.fastq.gz 939825 WGS PHESPV0445 RANDOM 55396013;55895545 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d3d3f0da2da1ee2b5cfd03825fa27bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439234/ERR1439234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439234/ERR1439234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439234/PHESPV0445.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439234/PHESPV0445.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439234/ERR1439234_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439234/ERR1439234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439234/PHESPV0445.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439234/PHESPV0445.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58680111;59182711 ERS1194613 ERX1509612 GENOMIC 186300028 2016-06-10 PHESPV0445 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439234/PHESPV0445.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439234/PHESPV0445.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439234 PHESPV0445 ERR1439239 PHESPV0450 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439239 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439239 a281599f47b2800bdc3f5a296520aaa4;4b0a1387aefd4f75d83ef4e3e51b440d 1313 53532476 80324d850b6edb170539c51355f10c6e;2ca900a5da334c4702d028a503672691 SAMEA4023508 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439239/ERR1439239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439239/ERR1439239_2.fastq.gz 605849 WGS PHESPV0450 RANDOM 35802418;36322758 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5e8f197ee92ebbf0d592b9700b5c791b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439239/ERR1439239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439239/ERR1439239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439239/PHESPV0450.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439239/PHESPV0450.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439239/ERR1439239_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439239/ERR1439239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439239/PHESPV0450.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439239/PHESPV0450.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 38022946;38536809 ERS1194618 ERX1509617 GENOMIC 120013214 2016-06-10 PHESPV0450 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439239/PHESPV0450.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439239/PHESPV0450.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439239 PHESPV0450 ERR1439245 PHESPV0456 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439245 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439245 15a136c0c842bef8390f9198a0341113;0a3e57044a023f15737d3e9d79d654f3 1313 98600288 ccc903876d93278f7a8f66e157d1dc54;628b37b42967f1e81f02d98cd4a980a7 SAMEA4023514 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439245/ERR1439245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439245/ERR1439245_2.fastq.gz 1121883 WGS PHESPV0456 RANDOM 66214517;66829875 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6be3dd5e573d1181b243c67eb60013ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439245/ERR1439245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439245/ERR1439245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439245/PHESPV0456.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439245/PHESPV0456.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439245/ERR1439245_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439245/ERR1439245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439245/PHESPV0456.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439245/PHESPV0456.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70059080;70680919 ERS1194624 ERX1509623 GENOMIC 222508701 2016-06-10 PHESPV0456 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439245/PHESPV0456.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439245/PHESPV0456.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439245 PHESPV0456 ERR1439250 PHESPV0461 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439250 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439250 91c1e6475d747bb059c166052fbe2efb;32909abc547470703fb41257ac976412 1313 243555058 8c8e6e4fcc819155330c4765784b563e;5a159ed9cd315c340c69fe36a2b95ab7 SAMEA4023519 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439250/ERR1439250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439250/ERR1439250_2.fastq.gz 2981442 WGS PHESPV0461 RANDOM 163413172;170292705 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline befffc158c35cd4d68da3bc96394459a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439250/ERR1439250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439250/ERR1439250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439250/PHESPV0461.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439250/PHESPV0461.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439250/ERR1439250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439250/ERR1439250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439250/PHESPV0461.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439250/PHESPV0461.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 172492911;179318554 ERS1194629 ERX1509628 GENOMIC 582171840 2016-06-10 PHESPV0461 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439250/PHESPV0461.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439250/PHESPV0461.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439250 PHESPV0461 ERR1439252 PHESPV0463 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439252 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439252 a619d926bcdd5f0b63db0ad97bad40a6;b9278af7f927c0d3c99a9ac7fc459822 1313 268114626 1868d58e5155c8f3172a7d9dee95262d;9b548f259ce8764a160fd4585ab51d4e SAMEA4023521 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439252/ERR1439252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439252/ERR1439252_2.fastq.gz 3316571 WGS PHESPV0463 RANDOM 181748829;186067678 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b297eba0ed03b907da42d82479540f36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439252/ERR1439252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439252/ERR1439252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439252/PHESPV0463.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439252/PHESPV0463.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439252/ERR1439252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439252/ERR1439252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439252/PHESPV0463.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439252/PHESPV0463.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 191802602;196137466 ERS1194631 ERX1509630 GENOMIC 649140091 2016-06-10 PHESPV0463 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439252/PHESPV0463.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439252/PHESPV0463.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439252 PHESPV0463 ERR1439291 PHESPV0502 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439291 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439291 288b22c46eae9b3fe7c08f939089080c;87024b73d4c72dd29f6557bfa3799a0a 1313 247117406 fdb5ab296cac9602ca575c3b938e85cc;43db51bcd4fd6b3ee097581e35a8815f SAMEA4023560 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439291/ERR1439291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439291/ERR1439291_2.fastq.gz 3045495 WGS PHESPV0502 RANDOM 166652897;172346748 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed4a80b4cfc3da28eb95d37c7046004e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439291/ERR1439291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439291/ERR1439291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439291/PHESPV0502.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439291/PHESPV0502.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439291/ERR1439291_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439291/ERR1439291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439291/PHESPV0502.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439291/PHESPV0502.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 175967334;181634180 ERS1194670 ERX1509669 GENOMIC 595592256 2016-06-10 PHESPV0502 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439291/PHESPV0502.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439291/PHESPV0502.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439291 PHESPV0502 ERR1439255 PHESPV0466 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439255 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439255 90fa7c0eb4e5b38a45b1b04418a55944;38cfdf24177bf9cff9f22d90b66736b4 1313 200737987 eef9e6ef3c18eee596f84fe614fe4464;15e2f91e3af399d38dbcee40023aef12 SAMEA4023524 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439255/ERR1439255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439255/ERR1439255_2.fastq.gz 2465175 WGS PHESPV0466 RANDOM 135303705;140155709 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 978cec7602d854f4263a77f89ddbee97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439255/ERR1439255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439255/ERR1439255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439255/PHESPV0466.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439255/PHESPV0466.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439255/ERR1439255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439255/ERR1439255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439255/PHESPV0466.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439255/PHESPV0466.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 143040583;147837112 ERS1194634 ERX1509633 GENOMIC 482009831 2016-06-10 PHESPV0466 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439255/PHESPV0466.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439255/PHESPV0466.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439255 PHESPV0466 ERR1439349 PHESPV0560 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439349 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439349 41a464b157c86e26a0b45c8d03033c6d;6a87c8e6890800c8fce893e35ed6474c 1313 200980080 b39a34411101de9ee62b3d8c3dcb5f09;6d5df38cbee4229ab4a653181318aaa7 SAMEA4023618 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439349/ERR1439349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439349/ERR1439349_2.fastq.gz 2514590 WGS PHESPV0560 RANDOM 136308798;140661060 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ba55e98c1ec7d21ae5ae1a185e02860b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439349/ERR1439349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439349/ERR1439349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439349/PHESPV0560.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439349/PHESPV0560.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439349/ERR1439349_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439349/ERR1439349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439349/PHESPV0560.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439349/PHESPV0560.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 144092385;148416204 ERS1194728 ERX1509727 GENOMIC 493195540 2016-06-10 PHESPV0560 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439349/PHESPV0560.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439349/PHESPV0560.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439349 PHESPV0560 ERR1439323 PHESPV0534 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439323 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439323 441159a02bb067cfdf6e0e044e98a8b4;2d8a957f27469f6a946b2155e010d932 1313 225029933 9f20a4739de61ad83af0f3bde480a983;2a2239e0992acdfc119e37068ec22e3d SAMEA4023592 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439323/ERR1439323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439323/ERR1439323_2.fastq.gz 2735166 WGS PHESPV0534 RANDOM 150600902;156649720 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline adedc4d1997618c89cbdef4704ec8e26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439323/ERR1439323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439323/ERR1439323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439323/PHESPV0534.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439323/PHESPV0534.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439323/ERR1439323_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439323/ERR1439323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439323/PHESPV0534.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439323/PHESPV0534.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 158960160;164946284 ERS1194702 ERX1509701 GENOMIC 533281483 2016-06-10 PHESPV0534 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439323/PHESPV0534.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439323/PHESPV0534.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439323 PHESPV0534 ERR1439340 PHESPV0551 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439340 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439340 efa4e554050106dd5aa295b59e787fef;8fcc2ec39d20836df7da7fe75d772934 1313 182635109 8fdd8ba3c9e1576cc7f42319389049c5;9f59a54615efeca45914c4de0f484e2e SAMEA4023609 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439340/ERR1439340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439340/ERR1439340_2.fastq.gz 2289471 WGS PHESPV0551 RANDOM 124061949;128195354 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a32be5c6bc02ad6bc0f9522bf21c2a22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439340/ERR1439340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439340/ERR1439340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439340/PHESPV0551.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439340/PHESPV0551.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439340/ERR1439340_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439340/ERR1439340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439340/PHESPV0551.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439340/PHESPV0551.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131244632;135363417 ERS1194719 ERX1509718 GENOMIC 449336067 2016-06-10 PHESPV0551 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439340/PHESPV0551.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439340/PHESPV0551.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439340 PHESPV0551 ERR1439357 PHESPV0568 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439357 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439357 902ab9741c5d77200096a0b32f621f4f;f14cf61f8c5921172471e86e0cd86fee 1313 195448699 b7a539d674c2911fa6b5414123fcc8bc;06bdc10b4e18ad4e043e0123a3af88ad SAMEA4023626 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439357/ERR1439357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439357/ERR1439357_2.fastq.gz 2442122 WGS PHESPV0568 RANDOM 132522856;136821737 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 36df022c6b91265983fdf4e18b6ff5d3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439357/ERR1439357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439357/ERR1439357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439357/PHESPV0568.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439357/PHESPV0568.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439357/ERR1439357_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439357/ERR1439357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439357/PHESPV0568.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439357/PHESPV0568.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 140106995;144374581 ERS1194736 ERX1509735 GENOMIC 478910858 2016-06-10 PHESPV0568 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439357/PHESPV0568.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439357/PHESPV0568.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439357 PHESPV0568 ERR1439401 PHESPV0612 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439401 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439401 765e14a45c764e5c557a6569469b30b3;38e09b1b3a729d46d500446e71589dca 1313 249995772 9c195af350044c9dadb437149a922086;c85f7d166569eacd97730ff650289521 SAMEA4023670 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439401/ERR1439401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439401/ERR1439401_2.fastq.gz 3143049 WGS PHESPV0612 RANDOM 169655715;174555133 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f54a137e7d4dd63f2651e4f689b97039 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439401/ERR1439401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439401/ERR1439401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439401/PHESPV0612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439401/PHESPV0612.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439401/ERR1439401_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439401/ERR1439401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439401/PHESPV0612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439401/PHESPV0612.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 179142437;184072094 ERS1194780 ERX1509779 GENOMIC 616991209 2016-06-10 PHESPV0612 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439401/PHESPV0612.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439401/PHESPV0612.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439401 PHESPV0612 ERR1439425 PHESPV0636 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439425 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439425 3431fc22a62cca1322d6a0b69db03981;65690969b4c122b6f74ba1fc3801eedc 1313 311430379 dbccd22dec23018b440b3286571cbb86;42c1e09507575a7522c43303a0bbd8dd SAMEA4023694 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439425/ERR1439425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439425/ERR1439425_2.fastq.gz 3905192 WGS PHESPV0636 RANDOM 210321316;218073326 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 33063e000094d30bfe8090fb31fb2bc1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439425/ERR1439425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439425/ERR1439425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439425/PHESPV0636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439425/PHESPV0636.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439425/ERR1439425_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439425/ERR1439425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439425/PHESPV0636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439425/PHESPV0636.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 221758113;229591263 ERS1194804 ERX1509803 GENOMIC 766324859 2016-06-10 PHESPV0636 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439425/PHESPV0636.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439425/PHESPV0636.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439425 PHESPV0636 ERR1439411 PHESPV0622 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439411 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439411 635a1a2716160c425b4b1529a2a122c7;e6823be86f6ff31920974cd463077ad5 1313 215766504 eaf95998f7fdcdbe84ee879f2791d262;f18c218793bf825e357c6eac9e28dd31 SAMEA4023680 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439411/ERR1439411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439411/ERR1439411_2.fastq.gz 2696314 WGS PHESPV0622 RANDOM 145786463;151687639 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fd092a1ef9cad9935fe23cf2e8dfcb8e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439411/ERR1439411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439411/ERR1439411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439411/PHESPV0622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439411/PHESPV0622.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439411/ERR1439411_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439411/ERR1439411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439411/PHESPV0622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439411/PHESPV0622.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 154049984;159931493 ERS1194790 ERX1509789 GENOMIC 528800311 2016-06-10 PHESPV0622 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439411/PHESPV0622.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439411/PHESPV0622.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439411 PHESPV0622 ERR1439414 PHESPV0625 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439414 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439414 308adb49fe3e4bc6eae470740fb66ae9;b925a4ecbb892abbef932aec9c1d2cc2 1313 176928001 294d4ec04af16fb6da0d8eb0ffe00f47;240a5a9a2c2be69274e772b156665f92 SAMEA4023683 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439414/ERR1439414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439414/ERR1439414_2.fastq.gz 2207206 WGS PHESPV0625 RANDOM 119170508;124464588 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 309fc9301683afbf945dd56f565aaa5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439414/ERR1439414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439414/ERR1439414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439414/PHESPV0625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439414/PHESPV0625.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439414/ERR1439414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439414/ERR1439414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439414/PHESPV0625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439414/PHESPV0625.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126158135;131428530 ERS1194793 ERX1509792 GENOMIC 432799001 2016-06-10 PHESPV0625 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439414/PHESPV0625.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439414/PHESPV0625.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439414 PHESPV0625 ERR1439432 PHESPV0643 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439432 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439432 6d6c47d6fbf33e815e2e077efbe7f78f;c598c53b77313ea27ae0006004a43df7 1313 278576128 25c93eacc35f89197a20a3dfeac6f3de;9a4b8d2bbebea4c9602c9f149364aa64 SAMEA4023701 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439432/ERR1439432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439432/ERR1439432_2.fastq.gz 3471333 WGS PHESPV0643 RANDOM 188041348;195829720 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ed6dff2acd0d551b615fe6c6054281b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439432/ERR1439432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439432/ERR1439432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439432/PHESPV0643.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439432/PHESPV0643.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439432/ERR1439432_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439432/ERR1439432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439432/PHESPV0643.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439432/PHESPV0643.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 198408028;206243873 ERS1194811 ERX1509810 GENOMIC 680631500 2016-06-10 PHESPV0643 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439432/PHESPV0643.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439432/PHESPV0643.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439432 PHESPV0643 ERR1439483 PHESPV0694 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439483 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439483 bd70f0f88315e962ebebd201b44c82ae;f69c45ab1a057c34693dbe329a4906e6 1313 93337871 95d25c989910732666e528defac6a522;b6d9e2f2a7240570c36b21b606949879 SAMEA4023752 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439483/ERR1439483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439483/ERR1439483_2.fastq.gz 1123662 WGS PHESPV0694 RANDOM 62486819;65562137 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 044b6fd4debf2444dc8a18316aad34c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439483/ERR1439483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439483/ERR1439483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439483/PHESPV0694.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439483/PHESPV0694.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439483/ERR1439483_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439483/ERR1439483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439483/PHESPV0694.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439483/PHESPV0694.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66412157;69520066 ERS1194862 ERX1509861 GENOMIC 219626130 2016-06-10 PHESPV0694 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439483/PHESPV0694.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439483/PHESPV0694.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439483 PHESPV0694 ERR1439503 PHESPV0714 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439503 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439503 14da8315073a74f7d499b2321b1a901b;9436733ae450df226925226e96577db0 1313 99333077 e53148969d0d9897aa7083c9c8b93dc2;0ea11b9eece0c2105cfea51633ecab7e SAMEA4023772 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439503/ERR1439503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439503/ERR1439503_2.fastq.gz 1184260 WGS PHESPV0714 RANDOM 65816669;70030703 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e1f2c76cc19010c800c130e0cbc800e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439503/ERR1439503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439503/ERR1439503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439503/PHESPV0714.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439503/PHESPV0714.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439503/ERR1439503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439503/ERR1439503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439503/PHESPV0714.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439503/PHESPV0714.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69901734;74136685 ERS1194882 ERX1509881 GENOMIC 230862365 2016-06-10 PHESPV0714 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439503/PHESPV0714.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439503/PHESPV0714.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439503 PHESPV0714 ERR1439484 PHESPV0695 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439484 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439484 a9845477d5e0c9f557b46ffb4d546175;d7f6ac6b91c8faf97e995ee879c10af6 1313 104120486 3a88be4e4eb3e55c59cea7d616a44e24;d37b1d919e08dbf1d6ea856675c11808 SAMEA4023753 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439484/ERR1439484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439484/ERR1439484_2.fastq.gz 1244043 WGS PHESPV0695 RANDOM 68995518;73371459 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 08172750b2842dfec38c69277c308281 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439484/ERR1439484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439484/ERR1439484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439484/PHESPV0695.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439484/PHESPV0695.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439484/ERR1439484_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439484/ERR1439484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439484/PHESPV0695.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439484/PHESPV0695.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73240406;77629201 ERS1194863 ERX1509862 GENOMIC 242463116 2016-06-10 PHESPV0695 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439484/PHESPV0695.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439484/PHESPV0695.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439484 PHESPV0695 ERR1439518 PHESPV0729 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439518 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439518 966ae84541ed5378bff3efb0eb8c956f;f1e05f6be1e8e90e9e3a6636342cfa3b 1313 123823147 033e13da90fa2a403070946d6594d249;840f95326572f85a57488314e66fe6f8 SAMEA4023787 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439518/ERR1439518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439518/ERR1439518_2.fastq.gz 1473884 WGS PHESPV0729 RANDOM 83384886;85257719 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2cc081e0f523f48e06ee7e82db4cc47f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439518/ERR1439518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439518/ERR1439518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439518/PHESPV0729.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439518/PHESPV0729.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439518/ERR1439518_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439518/ERR1439518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439518/PHESPV0729.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439518/PHESPV0729.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88357036;90207220 ERS1194897 ERX1509896 GENOMIC 286885319 2016-06-10 PHESPV0729 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439518/PHESPV0729.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439518/PHESPV0729.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439518 PHESPV0729 ERR1439526 PHESPV0737 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439526 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439526 bcb7bed311bfd9ab7239ea6ea4e888f8;98c48c440cdba7ea8e547600d3badda1 1313 179917951 b4175c59c1cf3daa69febf0d847876b5;482287ee5bb9bdcc791630d56d3d8b17 SAMEA4023795 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439526/ERR1439526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439526/ERR1439526_2.fastq.gz 2178526 WGS PHESPV0737 RANDOM 122545546;123032465 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c913da74f5cb6f0db2a87448e7b60793 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439526/ERR1439526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439526/ERR1439526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439526/PHESPV0737.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439526/PHESPV0737.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439526/ERR1439526_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439526/ERR1439526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439526/PHESPV0737.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439526/PHESPV0737.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129487375;129990403 ERS1194905 ERX1509904 GENOMIC 425377019 2016-06-10 PHESPV0737 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439526/PHESPV0737.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439526/PHESPV0737.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439526 PHESPV0737 ERR1439545 PHESPV0756 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439545 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439545 b6926636ec1c2621bfd99d66c7aa7e24;f25d9b60d1c00e33a074817aaa818bff 1313 108970400 6925cb103c0356615dd12190aff999f6;3b20cd36ec1b25ad41f0bc5eaf167ec3 SAMEA4023814 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439545/ERR1439545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439545/ERR1439545_2.fastq.gz 1269728 WGS PHESPV0756 RANDOM 73387747;74416931 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6a37f243c84f271189f72b777d8b516c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439545/ERR1439545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439545/ERR1439545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439545/PHESPV0756.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439545/PHESPV0756.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439545/ERR1439545_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439545/ERR1439545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439545/PHESPV0756.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439545/PHESPV0756.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77681510;78715976 ERS1194924 ERX1509923 GENOMIC 252139150 2016-06-10 PHESPV0756 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439545/PHESPV0756.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439545/PHESPV0756.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439545 PHESPV0756 ERR1439600 PHESPV0811 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439600 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439600 fc498d7627fb6965c8216c321f34ff53;f99f367fe5e9fbdfa370ddd159ba0db5 1313 107663301 6dfa8203e8aa3081ff9988eb2822b837;c0096016baa8ecfabc84f29cbba47517 SAMEA4023869 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439600/ERR1439600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439600/ERR1439600_2.fastq.gz 1218706 WGS PHESPV0811 RANDOM 71985960;73241990 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4cb1998abe7fb1af349661184f3ae732 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439600/ERR1439600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439600/ERR1439600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439600/PHESPV0811.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439600/PHESPV0811.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439600/ERR1439600_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439600/ERR1439600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439600/PHESPV0811.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439600/PHESPV0811.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76104509;77356537 ERS1194979 ERX1509978 GENOMIC 241465778 2016-06-10 PHESPV0811 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439600/PHESPV0811.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439600/PHESPV0811.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439600 PHESPV0811 ERR1439596 PHESPV0807 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439596 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439596 bcb100520166f9890d2a4544f330da6a;561d0950fb6c6283e06c9753d11039cc 1313 112754898 677fc3015673c9b43581bd9cb5476e63;7e843cf0c6f5029fde9c46c04aef7a86 SAMEA4023865 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439596/ERR1439596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439596/ERR1439596_2.fastq.gz 1274294 WGS PHESPV0807 RANDOM 75219988;77002997 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9343cb2bbd2d1f83d3b7abb89114d2ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439596/ERR1439596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439596/ERR1439596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439596/PHESPV0807.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439596/PHESPV0807.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439596/ERR1439596_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439596/ERR1439596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439596/PHESPV0807.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439596/PHESPV0807.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79482207;81249579 ERS1194975 ERX1509974 GENOMIC 252351425 2016-06-10 PHESPV0807 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439596/PHESPV0807.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439596/PHESPV0807.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439596 PHESPV0807 ERR1439617 PHESPV0828 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439617 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439617 34b57ef2f1dec3985fe869c48b9917c6;70f52d51e3413a0716fcc6bd30e76950 1313 82921007 f5f85594b1fdbcb205b1399d2810381f;ff0afa851f0e0ca8a9ea88db551dfed3 SAMEA4023886 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439617/ERR1439617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439617/ERR1439617_2.fastq.gz 944791 WGS PHESPV0828 RANDOM 55492502;56269727 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5c765eeb61ab02196ceb5a27e3d2a92 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439617/ERR1439617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439617/ERR1439617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439617/PHESPV0828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439617/PHESPV0828.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439617/ERR1439617_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439617/ERR1439617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439617/PHESPV0828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439617/PHESPV0828.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58786135;59564706 ERS1194996 ERX1509995 GENOMIC 187248684 2016-06-10 PHESPV0828 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439617/PHESPV0828.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439617/PHESPV0828.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439617 PHESPV0828 ERR1439633 PHESPV0844 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439633 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439633 2635933bf7a0e322ab18888c39a4c248;984b01bad5b5ce1f99c2c5c89485fe6a 1313 125420463 892bd430117710f018913d2191021e97;151b151614942d248347bc37f47b8fca SAMEA4023902 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439633/ERR1439633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439633/ERR1439633_2.fastq.gz 1398680 WGS PHESPV0844 RANDOM 82246797;85780564 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f23bf1e76af77f2e52edd98e1dbf796d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439633/ERR1439633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439633/ERR1439633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439633/PHESPV0844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439633/PHESPV0844.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439633/ERR1439633_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439633/ERR1439633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439633/PHESPV0844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439633/PHESPV0844.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86869992;90353727 ERS1195012 ERX1510011 GENOMIC 276600039 2016-06-10 PHESPV0844 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439633/PHESPV0844.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439633/PHESPV0844.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439633 PHESPV0844 ERR1439645 PHESPV0856 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439645 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439645 a8c0ed9d7fea2ffcdb0a8d0a745cccce;03477be9230502508ed1f021af2a0f39 1313 170225317 b844bbff2851acc90d18da53011d6843;4006af03b160853bc7dac5b305c3e091 SAMEA4023914 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439645/ERR1439645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439645/ERR1439645_2.fastq.gz 1941675 WGS PHESPV0856 RANDOM 114295224;116421527 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7533d445b60df35d6754ba5e6a0a6d33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439645/ERR1439645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439645/ERR1439645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439645/PHESPV0856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439645/PHESPV0856.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439645/ERR1439645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439645/ERR1439645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439645/PHESPV0856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439645/PHESPV0856.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120540619;122666526 ERS1195024 ERX1510023 GENOMIC 384963423 2016-06-10 PHESPV0856 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439645/PHESPV0856.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439645/PHESPV0856.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439645 PHESPV0856 ERR1439644 PHESPV0855 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439644 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439644 4cf8b10bdc7fbd4d074f85b8dde7778a;e763a3293a1165bfff67cbb45577a699 1313 169728326 ca0ceb675079d889306dda3750f88976;b4d23ec0104c87a895401def765d9a28 SAMEA4023913 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439644/ERR1439644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439644/ERR1439644_2.fastq.gz 1955092 WGS PHESPV0855 RANDOM 114123745;115076401 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d096d5a4c31ac8811486e280268cc305 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439644/ERR1439644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439644/ERR1439644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439644/PHESPV0855.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439644/PHESPV0855.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439644/ERR1439644_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439644/ERR1439644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439644/PHESPV0855.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439644/PHESPV0855.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120349870;121320159 ERS1195023 ERX1510022 GENOMIC 387826359 2016-06-10 PHESPV0855 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439644/PHESPV0855.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439644/PHESPV0855.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439644 PHESPV0855 ERR1439646 PHESPV0857 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439646 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439646 2083387433ca23e38984583fb5bbb69e;49653004f47c27d6e24db5b7398cde47 1313 109571414 b733d679753e4964e142b473941251aa;97ae35937cfbfc5a858f0aeedeb72ba8 SAMEA4023915 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439646/ERR1439646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439646/ERR1439646_2.fastq.gz 1243800 WGS PHESPV0857 RANDOM 73441451;75226376 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a44dbaa0540db33ffd44942ea162a25b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439646/ERR1439646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439646/ERR1439646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439646/PHESPV0857.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439646/PHESPV0857.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439646/ERR1439646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439646/ERR1439646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439646/PHESPV0857.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439646/PHESPV0857.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77661447;79428207 ERS1195025 ERX1510024 GENOMIC 246530512 2016-06-10 PHESPV0857 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439646/PHESPV0857.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439646/PHESPV0857.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439646 PHESPV0857 ERR1439637 PHESPV0848 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439637 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439637 75907c6c22ba7aeee6e635d07584a735;1ce8980563ea2a778617984cb3e0c0ed 1313 85244148 d91d1bbcfc99cb85287d9ad27db643ad;bcbe581cac0552571ecdc8354a26c97d SAMEA4023906 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439637/ERR1439637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439637/ERR1439637_2.fastq.gz 969953 WGS PHESPV0848 RANDOM 56914415;57849888 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d8a21b10e474d4ded8add6235ee3429b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439637/ERR1439637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439637/ERR1439637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439637/PHESPV0848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439637/PHESPV0848.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439637/ERR1439637_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439637/ERR1439637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439637/PHESPV0848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439637/PHESPV0848.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 60268054;61190277 ERS1195016 ERX1510015 GENOMIC 192239003 2016-06-10 PHESPV0848 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439637/PHESPV0848.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439637/PHESPV0848.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439637 PHESPV0848 ERR1439649 PHESPV0860 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439649 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439649 6979c4eb50f83102afda4c857dad02b9;bf6e06ef6d99b84dc6990de9d3aefe7e 1313 116343771 f4dc028c8e2c6d8aa6a8babe576f465b;d3c2d1b3893a38d8014e7e51d6957b17 SAMEA4023918 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439649/ERR1439649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439649/ERR1439649_2.fastq.gz 1312853 WGS PHESPV0860 RANDOM 77214351;79589142 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f41b4322f6b315f16ce748f4ce162c8f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439649/ERR1439649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439649/ERR1439649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439649/PHESPV0860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439649/PHESPV0860.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439649/ERR1439649_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439649/ERR1439649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439649/PHESPV0860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439649/PHESPV0860.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81585965;83930009 ERS1195028 ERX1510027 GENOMIC 259860637 2016-06-10 PHESPV0860 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439649/PHESPV0860.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439649/PHESPV0860.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439649 PHESPV0860 ERR1439648 PHESPV0859 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439648 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439648 41d063693fc5f2a82c297c7603bdc46e;cd212bc522bac37a33f39e6cd86c3f7d 1313 48310634 0043302960c94265a093bd44a5f62449;ec927bb30474cf3819c7b1e78b482e04 SAMEA4023917 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439648/ERR1439648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439648/ERR1439648_2.fastq.gz 547114 WGS PHESPV0859 RANDOM 31955511;32467356 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a452680f2e02db115f43931351740067 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439648/ERR1439648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439648/ERR1439648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439648/PHESPV0859.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439648/PHESPV0859.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439648/ERR1439648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439648/ERR1439648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439648/PHESPV0859.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439648/PHESPV0859.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 33973686;34476337 ERS1195027 ERX1510026 GENOMIC 108282586 2016-06-10 PHESPV0859 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439648/PHESPV0859.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439648/PHESPV0859.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439648 PHESPV0859 ERR1439655 PHESPV0866 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439655 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439655 0f2720937617055649ec95467e12d652;01d6e948bdaaf35f485e1593f6135e85 1313 57205118 56eb9556f980fb78ad1eabbe9e97cea2;44d7067ab3729881db93b26cb6835abe SAMEA4023924 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439655/ERR1439655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439655/ERR1439655_2.fastq.gz 654853 WGS PHESPV0866 RANDOM 38309093;38995768 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b330080a1f9bd930183e806b0d0ba10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439655/ERR1439655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439655/ERR1439655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439655/PHESPV0866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439655/PHESPV0866.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439655/ERR1439655_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439655/ERR1439655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439655/PHESPV0866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439655/PHESPV0866.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 40689063;41366765 ERS1195034 ERX1510033 GENOMIC 129857189 2016-06-10 PHESPV0866 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439655/PHESPV0866.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439655/PHESPV0866.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439655 PHESPV0866 ERR1439653 PHESPV0864 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439653 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439653 7635663bebce9c60f003a02ba5fe96bd;02e1f21ecbaaee48cf48b5c44f983be6 1313 90027897 da2b3f98a372ef70e8dd97a9ced1f617;fc08846268e7e0319422a97d6fd22e7b SAMEA4023922 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439653/ERR1439653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439653/ERR1439653_2.fastq.gz 1012227 WGS PHESPV0864 RANDOM 59361558;61683989 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e77c5126319bca00cbd4de212f46135 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439653/ERR1439653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439653/ERR1439653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439653/PHESPV0864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439653/PHESPV0864.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439653/ERR1439653_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439653/ERR1439653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439653/PHESPV0864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439653/PHESPV0864.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62866971;65165585 ERS1195032 ERX1510031 GENOMIC 200370716 2016-06-10 PHESPV0864 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439653/PHESPV0864.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439653/PHESPV0864.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439653 PHESPV0864 ERR1439652 PHESPV0863 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439652 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439652 6effcda5336e8ab949877632bf2dec62;59afb1dd2b434bf82499c9dd30b5f50e 1313 96752012 fbec88f1408900f97103af57db1893dc;f9e319de4d60d43df60cc2d9dddcc9b7 SAMEA4023921 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439652/ERR1439652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439652/ERR1439652_2.fastq.gz 1112208 WGS PHESPV0863 RANDOM 64849076;65448856 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline da227d970bae9e489ebb1bc4fa669955 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439652/ERR1439652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439652/ERR1439652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439652/PHESPV0863.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439652/PHESPV0863.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439652/ERR1439652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439652/ERR1439652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439652/PHESPV0863.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439652/PHESPV0863.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68652408;69256369 ERS1195031 ERX1510030 GENOMIC 220511379 2016-06-10 PHESPV0863 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439652/PHESPV0863.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439652/PHESPV0863.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439652 PHESPV0863 ERR1439656 PHESPV0867 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439656 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439656 08829134cd855ba859e02b2803c74666;bd6ef7d1ad98ba00af137f5c0c9a6eaf 1313 99168276 730b0dfcc78d3feae455d5dad2dc8785;a08c8215884cbc461ec34da45d04732f SAMEA4023925 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439656/ERR1439656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439656/ERR1439656_2.fastq.gz 1135541 WGS PHESPV0867 RANDOM 66578073;67664781 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8611ac2442f157869e222d5b7ca567a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439656/ERR1439656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439656/ERR1439656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439656/PHESPV0867.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439656/PHESPV0867.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439656/ERR1439656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439656/ERR1439656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439656/PHESPV0867.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439656/PHESPV0867.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70467578;71554246 ERS1195035 ERX1510034 GENOMIC 225161219 2016-06-10 PHESPV0867 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439656/PHESPV0867.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439656/PHESPV0867.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439656 PHESPV0867 ERR1439667 PHESPV0878 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439667 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439667 c94337e7f3d0ff0e7b0f724a29a7008a;6fd36964c587de19a43d60a538ebde1d 1313 184443371 d08c0388b9a2c16885834c0e9438bc84;752aec3c992b660745d80b67b5f0d008 SAMEA4023936 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439667/ERR1439667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439667/ERR1439667_2.fastq.gz 2096828 WGS PHESPV0878 RANDOM 123138105;126419839 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8eda2940d9eba8d988ee99f55e3e8fd2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439667/ERR1439667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439667/ERR1439667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439667/PHESPV0878.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439667/PHESPV0878.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439667/ERR1439667_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439667/ERR1439667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439667/PHESPV0878.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439667/PHESPV0878.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129743242;133010284 ERS1195046 ERX1510045 GENOMIC 415433723 2016-06-10 PHESPV0878 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439667/PHESPV0878.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439667/PHESPV0878.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439667 PHESPV0878 ERR1439657 PHESPV0868 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439657 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439657 6fbae150c365436a311590bc852575fe;ffe1f7952845ecbb8fd269a3f336aadd 1313 177801556 3a15d82bba0a8c9ada10466ea5f85395;fd8c1cceaa818f91a3343a88df7162db SAMEA4023926 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439657/ERR1439657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439657/ERR1439657_2.fastq.gz 2064310 WGS PHESPV0868 RANDOM 118700811;121230078 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 18b3a449f183d4fd90a485aa16e72bb2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439657/ERR1439657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439657/ERR1439657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439657/PHESPV0868.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439657/PHESPV0868.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439657/ERR1439657_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439657/ERR1439657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439657/PHESPV0868.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439657/PHESPV0868.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125245589;127794766 ERS1195036 ERX1510035 GENOMIC 409649644 2016-06-10 PHESPV0868 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439657/PHESPV0868.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439657/PHESPV0868.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439657 PHESPV0868 ERR1439664 PHESPV0875 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439664 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439664 50d8fe035fdd20ead5e639856320ab66;a5550e8255622e75a7f59f4b73e66711 1313 102448615 459bf60d35d6b1ada8b0478eb22e40e7;0a041c66e94747bc321e47484c9471ee SAMEA4023933 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439664/ERR1439664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439664/ERR1439664_2.fastq.gz 1171945 WGS PHESPV0875 RANDOM 68565571;69639960 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 396bb1100640ddf124c2fca7cb216781 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439664/ERR1439664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439664/ERR1439664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439664/PHESPV0875.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439664/PHESPV0875.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439664/ERR1439664_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439664/ERR1439664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439664/PHESPV0875.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439664/PHESPV0875.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72534040;73599166 ERS1195043 ERX1510042 GENOMIC 232311613 2016-06-10 PHESPV0875 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439664/PHESPV0875.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439664/PHESPV0875.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439664 PHESPV0875 ERR1439660 PHESPV0871 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439660 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439660 3a7528182349e12f05c79f42d24e65e1;2a9ede105f9a0684d8cff7a7e35af790 1313 162716446 0770263e7377ad0fee63924100a788c1;62ab6e99f84be202c819f5b8f429eec8 SAMEA4023929 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439660/ERR1439660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439660/ERR1439660_2.fastq.gz 1800990 WGS PHESPV0871 RANDOM 108703712;110711977 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8521d4fdfa91906c77b08834ca8ca5e6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439660/ERR1439660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439660/ERR1439660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439660/PHESPV0871.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439660/PHESPV0871.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439660/ERR1439660_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439660/ERR1439660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439660/PHESPV0871.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439660/PHESPV0871.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114581513;116574410 ERS1195039 ERX1510038 GENOMIC 356537802 2016-06-10 PHESPV0871 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439660/PHESPV0871.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439660/PHESPV0871.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439660 PHESPV0871 ERR1439668 PHESPV0879 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439668 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439668 be51a4976bc679cc9d069ee317cd445e;f3f22bf6f400177b42b11d2fb884b0fa 1313 98797296 d0d073ceedbba6989f44eca55cc6c7f1;640319b7f53bc4e5969f7865caad6fad SAMEA4023937 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439668/ERR1439668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439668/ERR1439668_2.fastq.gz 1125890 WGS PHESPV0879 RANDOM 66317071;67634714 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eba07ae80f4b342131feef1fc6912330 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439668/ERR1439668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439668/ERR1439668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439668/PHESPV0879.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439668/PHESPV0879.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439668/ERR1439668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439668/ERR1439668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439668/PHESPV0879.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439668/PHESPV0879.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70170950;71479376 ERS1195047 ERX1510046 GENOMIC 223242985 2016-06-10 PHESPV0879 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439668/PHESPV0879.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439668/PHESPV0879.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439668 PHESPV0879 ERR1439669 PHESPV0880 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439669 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439669 612441fa1623c81a6f7f05806f8691e3;6fca87e847fc2d309033c9e4adcdd93e 1313 165485615 4db3f7e6b94aba91723b534f25735171;5474410af72c49787dde0cb8210d919b SAMEA4023938 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439669/ERR1439669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439669/ERR1439669_2.fastq.gz 1883330 WGS PHESPV0880 RANDOM 111127084;111859184 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d5b9a5091b35037d7a184cb976034809 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439669/ERR1439669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439669/ERR1439669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439669/PHESPV0880.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439669/PHESPV0880.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439669/ERR1439669_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439669/ERR1439669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439669/PHESPV0880.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439669/PHESPV0880.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117167434;117915252 ERS1195048 ERX1510047 GENOMIC 373331618 2016-06-10 PHESPV0880 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439669/PHESPV0880.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439669/PHESPV0880.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439669 PHESPV0880 ERR1439672 PHESPV0883 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439672 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439672 5b7c56d4c03edbd759b88443c6063724;50cb3180b97475635aadd675570dcd35 1313 183280834 96a13836f8a024df05f49605701dc173;d4b376d5beecc15d903769292fe8a5f6 SAMEA4023941 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439672/ERR1439672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439672/ERR1439672_2.fastq.gz 2043319 WGS PHESPV0883 RANDOM 121131507;126262346 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 249c5e57e90008976033dbb4caf977fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439672/ERR1439672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439672/ERR1439672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439672/PHESPV0883.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439672/PHESPV0883.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439672/ERR1439672_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439672/ERR1439672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439672/PHESPV0883.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439672/PHESPV0883.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127614764;132709510 ERS1195051 ERX1510050 GENOMIC 404363328 2016-06-10 PHESPV0883 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439672/PHESPV0883.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439672/PHESPV0883.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439672 PHESPV0883 ERR1439670 PHESPV0881 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439670 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439670 f2734a9f6a2777912c0f50ac8a66278e;0236d8416eb8dde724f0e3207a4e8b44 1313 222231087 5b40a6ab5a36106cd622d94644d0a725;fb738e3df48c1026d971e63a069faaa9 SAMEA4023939 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439670/ERR1439670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439670/ERR1439670_2.fastq.gz 2460083 WGS PHESPV0881 RANDOM 148092730;150528826 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ea7896d5829decc5d3940b3d2e35b06a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439670/ERR1439670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439670/ERR1439670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439670/PHESPV0881.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439670/PHESPV0881.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439670/ERR1439670_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439670/ERR1439670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439670/PHESPV0881.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439670/PHESPV0881.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 155702205;158112154 ERS1195049 ERX1510048 GENOMIC 487204696 2016-06-10 PHESPV0881 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439670/PHESPV0881.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439670/PHESPV0881.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439670 PHESPV0881 ERR1439674 PHESPV0885 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439674 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439674 a9cc239e5c24b42175ec3a5811661af5;5ebfb677bd263b5013bdbcdb8710a533 1313 141384377 1bf8ac5b1cdc4a846c5735d182913191;3e42dde0e44b643ac8460b2d9741a779 SAMEA4023943 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439674/ERR1439674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439674/ERR1439674_2.fastq.gz 1610025 WGS PHESPV0885 RANDOM 94978276;96533888 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 84499ef9f7f4216344add88df3bf091e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439674/ERR1439674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439674/ERR1439674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439674/PHESPV0885.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439674/PHESPV0885.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439674/ERR1439674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439674/ERR1439674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439674/PHESPV0885.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439674/PHESPV0885.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100297656;101852850 ERS1195053 ERX1510052 GENOMIC 319225014 2016-06-10 PHESPV0885 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439674/PHESPV0885.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439674/PHESPV0885.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439674 PHESPV0885 ERR1439675 PHESPV0886 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439675 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439675 d7db5bd1a851cfcc3634257dcd67ea4c;4ce5da8d259af1c249db2c85c18ee15f 1313 176785793 a680e66060189d44a42b9605d6850668;39d430bb12d60e467f23d64b164612c8 SAMEA4023944 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439675/ERR1439675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439675/ERR1439675_2.fastq.gz 2015544 WGS PHESPV0886 RANDOM 118804864;121137437 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 285435a1a8343ed2e061c1eb61618f9b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439675/ERR1439675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439675/ERR1439675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439675/PHESPV0886.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439675/PHESPV0886.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439675/ERR1439675_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439675/ERR1439675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439675/PHESPV0886.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439675/PHESPV0886.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125230156;127564006 ERS1195054 ERX1510053 GENOMIC 399833355 2016-06-10 PHESPV0886 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439675/PHESPV0886.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439675/PHESPV0886.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439675 PHESPV0886 ERR1439686 PHESPV0897 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439686 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439686 d7e0cdebc53509d075057cd5972a98ed;841bfa5b02eaf0de8cc8525c4a7457c0 1313 181489313 60735bd1113734c55308ad04c8242969;0604152ea5aadb1963d80df32dde9899 SAMEA4023955 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439686/ERR1439686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439686/ERR1439686_2.fastq.gz 2059792 WGS PHESPV0897 RANDOM 121710635;124060259 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1f1ce99619c530d4d5ccee547e805fb8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439686/ERR1439686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439686/ERR1439686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439686/PHESPV0897.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439686/PHESPV0897.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439686/ERR1439686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439686/ERR1439686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439686/PHESPV0897.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439686/PHESPV0897.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128293351;130650171 ERS1195065 ERX1510064 GENOMIC 408452452 2016-06-10 PHESPV0897 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439686/PHESPV0897.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439686/PHESPV0897.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439686 PHESPV0897 ERR1439681 PHESPV0892 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439681 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439681 b356f97aa97d54223d81c9416c7fe187;de8ea3af5323a72c69cc3eded6ecb71b 1313 188383916 5ee4bdfdad7a1b9085f5729195e7c661;ee02f87ef06d85c13b5cb89eb5d60bc6 SAMEA4023950 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439681/ERR1439681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439681/ERR1439681_2.fastq.gz 2144550 WGS PHESPV0892 RANDOM 126586341;128689866 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 13fe0e193d241b3eac24aa599bcecf51 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439681/ERR1439681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439681/ERR1439681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439681/PHESPV0892.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439681/PHESPV0892.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439681/ERR1439681_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439681/ERR1439681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439681/PHESPV0892.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439681/PHESPV0892.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133354543;135463191 ERS1195060 ERX1510059 GENOMIC 425320066 2016-06-10 PHESPV0892 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439681/PHESPV0892.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439681/PHESPV0892.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439681 PHESPV0892 ERR1439678 PHESPV0889 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439678 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439678 5e35ce2c9e5225f9c9a014b7172970e9;eead42bae609d04b54e898bdb95a63e0 1313 207561034 222907103e7a949c363b099ae2e1330d;9077b36489398da7f5e4ad50820f237d SAMEA4023947 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439678/ERR1439678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439678/ERR1439678_2.fastq.gz 2365122 WGS PHESPV0889 RANDOM 139067357;140474789 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cf0850fe76ac4f4add39183f9474a55e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439678/ERR1439678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439678/ERR1439678_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439678/PHESPV0889.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439678/PHESPV0889.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439678/ERR1439678_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439678/ERR1439678_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439678/PHESPV0889.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439678/PHESPV0889.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 146375711;147804577 ERS1195057 ERX1510056 GENOMIC 468812835 2016-06-10 PHESPV0889 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439678/PHESPV0889.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439678/PHESPV0889.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439678 PHESPV0889 ERR1439688 PHESPV0899 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439688 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439688 4f44904a718088f24772be88ee700a7d;8897c0a202ea88524d66f800b21801e7 1313 119497860 61a2b5f041a7b274769fffd3e838b056;db4b7d04c10463c84f63a2305253573e SAMEA4023957 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439688/ERR1439688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439688/ERR1439688_2.fastq.gz 1321765 WGS PHESPV0899 RANDOM 79491236;81617363 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b60ce571f2d0e8a56c0eaafd14f101db ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439688/ERR1439688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439688/ERR1439688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439688/PHESPV0899.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439688/PHESPV0899.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439688/ERR1439688_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439688/ERR1439688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439688/PHESPV0899.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439688/PHESPV0899.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83943983;86031100 ERS1195067 ERX1510066 GENOMIC 261737423 2016-06-10 PHESPV0899 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439688/PHESPV0899.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439688/PHESPV0899.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439688 PHESPV0899 ERR1439693 PHESPV0904 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439693 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439693 3d3f9a17481b65aa677823dbbd2681a1;0d6f995bc37f98e2b3c59022b630a7fb 1313 132699775 971e8dd3e09f8833e791ab58cc736879;1d8ab72e67c9a06662916d08eef62333 SAMEA4023962 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439693/ERR1439693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439693/ERR1439693_2.fastq.gz 1458338 WGS PHESPV0904 RANDOM 88332041;90782387 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21ddf345e728e4be6cfd196171019b3d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439693/ERR1439693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439693/ERR1439693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439693/PHESPV0904.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439693/PHESPV0904.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439693/ERR1439693_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439693/ERR1439693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439693/PHESPV0904.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439693/PHESPV0904.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93200269;95607994 ERS1195072 ERX1510071 GENOMIC 288525175 2016-06-10 PHESPV0904 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439693/PHESPV0904.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439693/PHESPV0904.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439693 PHESPV0904 ERR1439695 PHESPV0906 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439695 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439695 830f88d27892acb973257d4c54502d35;fffaa9c248d68469506ecc719199aa1a 1313 89165387 40a1e0b8c13561d6d373ed831530e625;d5b49d93977e06c42051012e802a5bfa SAMEA4023964 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439695/ERR1439695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439695/ERR1439695_2.fastq.gz 979214 WGS PHESPV0906 RANDOM 59399398;60808208 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a50e08f49f5559d8e7abb526fd5f89d9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439695/ERR1439695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439695/ERR1439695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439695/PHESPV0906.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439695/PHESPV0906.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439695/ERR1439695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439695/ERR1439695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439695/PHESPV0906.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439695/PHESPV0906.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62820172;64204537 ERS1195074 ERX1510073 GENOMIC 193753081 2016-06-10 PHESPV0906 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439695/PHESPV0906.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439695/PHESPV0906.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439695 PHESPV0906 ERR1439696 PHESPV0907 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439696 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439696 4a75c8115d3e84cfe033911be7f9caaa;473d18e5cf87aee9d04ef8d9f9b40f49 1313 139347642 656a9fdb513bea3826415367a9a9677f;4599ac77a977cda952f4c457aee82653 SAMEA4023965 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439696/ERR1439696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439696/ERR1439696_2.fastq.gz 1532145 WGS PHESPV0907 RANDOM 92892170;95320812 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c0280b1ffa56b230b57f2335217fef1b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439696/ERR1439696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439696/ERR1439696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439696/PHESPV0907.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439696/PHESPV0907.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439696/ERR1439696_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439696/ERR1439696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439696/PHESPV0907.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439696/PHESPV0907.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97978381;100369473 ERS1195075 ERX1510074 GENOMIC 303089652 2016-06-10 PHESPV0907 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439696/PHESPV0907.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439696/PHESPV0907.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439696 PHESPV0907 ERR1439697 PHESPV0908 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439697 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439697 9e70da578b2a021f788784c2cd71c0b7;a65efcffb40eaa7b2af6dcc66c582101 1313 163226771 9e9668c6e4725b7d429799915b702f58;f55f185c3faacdce463b7be4ce8df793 SAMEA4023966 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439697/ERR1439697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439697/ERR1439697_2.fastq.gz 1790332 WGS PHESPV0908 RANDOM 108163693;111118795 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1618fda15899518b45fbfc6f7164c839 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439697/ERR1439697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439697/ERR1439697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439697/PHESPV0908.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439697/PHESPV0908.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439697/ERR1439697_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439697/ERR1439697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439697/PHESPV0908.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439697/PHESPV0908.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113946527;116863502 ERS1195076 ERX1510075 GENOMIC 353980022 2016-06-10 PHESPV0908 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439697/PHESPV0908.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439697/PHESPV0908.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439697 PHESPV0908 ERR1439699 PHESPV0910 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439699 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439699 a39976fd991a3b2eb08fef1784a4bfeb;d5baeb46ebfd38cd3986a99da0303341 1313 163769793 7d2f3c21b8374b3c2e9318c9c72fd8b0;cb397e16fc12341255b29df3ad3e3428 SAMEA4023968 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439699/ERR1439699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439699/ERR1439699_2.fastq.gz 1806676 WGS PHESPV0910 RANDOM 109057537;111391938 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 592b9bf83b1723d2e21dc20ae2edf16a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439699/ERR1439699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439699/ERR1439699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439699/PHESPV0910.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439699/PHESPV0910.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439699/ERR1439699_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439699/ERR1439699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439699/PHESPV0910.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439699/PHESPV0910.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114898774;117201470 ERS1195078 ERX1510077 GENOMIC 357422255 2016-06-10 PHESPV0910 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439699/PHESPV0910.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439699/PHESPV0910.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439699 PHESPV0910 ERR1439709 PHESPV0920 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439709 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439709 f3276154b3d3187317c9c8cb788696b0;54ef6a5f555fa7cf43cd4a214b27371c 1313 134854994 68956330df36999dbb94fcc2cffaa4ad;1b37e023db6c1b5f705f93b345472f07 SAMEA4023978 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439709/ERR1439709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439709/ERR1439709_2.fastq.gz 1485578 WGS PHESPV0920 RANDOM 89910299;91900822 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 569213c240773cfb708b79ea558288d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439709/ERR1439709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439709/ERR1439709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439709/PHESPV0920.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439709/PHESPV0920.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439709/ERR1439709_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439709/ERR1439709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439709/PHESPV0920.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439709/PHESPV0920.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94866678;96824793 ERS1195088 ERX1510087 GENOMIC 293878653 2016-06-10 PHESPV0920 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439709/PHESPV0920.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439709/PHESPV0920.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439709 PHESPV0920 ERR1439703 PHESPV0914 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439703 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439703 ba50ad4130675a1c0f0d4f8f8b59c142;6abcc9bbde036db5fa9118b8908e1a9e 1313 126360457 985dab689736918edb1b1d6018bcfc36;d5bf36ed86cad1f820e157a165742f47 SAMEA4023972 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439703/ERR1439703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439703/ERR1439703_2.fastq.gz 1371207 WGS PHESPV0914 RANDOM 83365505;86485288 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63973d2911e2d7bc939fe52cbf1722e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439703/ERR1439703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439703/ERR1439703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439703/PHESPV0914.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439703/PHESPV0914.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439703/ERR1439703_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439703/ERR1439703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439703/PHESPV0914.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439703/PHESPV0914.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87961061;91031103 ERS1195082 ERX1510081 GENOMIC 270866542 2016-06-10 PHESPV0914 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439703/PHESPV0914.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439703/PHESPV0914.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439703 PHESPV0914 ERR1439707 PHESPV0918 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439707 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439707 cec80a0c48fdfdefe45404c222bbf352;ff481c805311d6f2aed8c33a28395bec 1313 107650590 c6bf6b11577d08e102a049544f1b150a;e6064775f79914387a5526e881dab71c SAMEA4023976 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439707/ERR1439707_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439707/ERR1439707_2.fastq.gz 1189325 WGS PHESPV0918 RANDOM 71640579;73081843 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6e64588aaa782aac547d19f4c41dae06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439707/ERR1439707_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439707/ERR1439707_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439707/PHESPV0918.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439707/PHESPV0918.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439707/ERR1439707_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439707/ERR1439707_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439707/PHESPV0918.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439707/PHESPV0918.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75689231;77103605 ERS1195086 ERX1510085 GENOMIC 235473694 2016-06-10 PHESPV0918 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439707/PHESPV0918.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439707/PHESPV0918.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439707 PHESPV0918 ERR1439715 PHESPV0926 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439715 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439715 699b629f5152be1d13c9bd23c3e5501e;9f200b8eac7e9f7a39f0fa18fc5c4b9e 1313 95768321 289fb4276e718349e22a5f8d8fce6eff;ca08c1efcefe3a346a124aae3547fed8 SAMEA4023984 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439715/ERR1439715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439715/ERR1439715_2.fastq.gz 1054117 WGS PHESPV0926 RANDOM 63919384;65313621 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 66960687f94d13f4e4a6d31e413e21a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439715/ERR1439715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439715/ERR1439715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439715/PHESPV0926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439715/PHESPV0926.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439715/ERR1439715_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439715/ERR1439715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439715/PHESPV0926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439715/PHESPV0926.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67577624;68946475 ERS1195094 ERX1510093 GENOMIC 208605768 2016-06-10 PHESPV0926 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439715/PHESPV0926.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439715/PHESPV0926.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439715 PHESPV0926 ERR1439702 PHESPV0913 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439702 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439702 0169199d3410c4820035c7d476819658;264178680cb2d339f35543591858193a 1313 197801772 e9aba106b32a2692dc9abd1449c77698;c94ee0ec3998aea8dc85ae9f4e851033 SAMEA4023971 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439702/ERR1439702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439702/ERR1439702_2.fastq.gz 2189211 WGS PHESPV0913 RANDOM 132263105;134226395 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21d56108080e21e82036cc019d22ee91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439702/ERR1439702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439702/ERR1439702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439702/PHESPV0913.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439702/PHESPV0913.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439702/ERR1439702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439702/ERR1439702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439702/PHESPV0913.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439702/PHESPV0913.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 139152988;141099965 ERS1195081 ERX1510080 GENOMIC 433380798 2016-06-10 PHESPV0913 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439702/PHESPV0913.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439702/PHESPV0913.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439702 PHESPV0913 ERR1439720 PHESPV0931 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439720 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439720 92afaede1c74c4dc737ddbce1b88e974;f11800d7c8fd8cfe9ad37dec65cc088e 1313 131211892 7a4f8ce17e6cfac95c65c62d35f02ecc;62c1b1fa679455ad95c3a6d72380ec02 SAMEA4023989 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439720/ERR1439720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439720/ERR1439720_2.fastq.gz 1437974 WGS PHESPV0931 RANDOM 87094918;89775264 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3577e3d56036ef6570043b6226e9ee7a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439720/ERR1439720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439720/ERR1439720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439720/PHESPV0931.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439720/PHESPV0931.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439720/ERR1439720_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439720/ERR1439720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439720/PHESPV0931.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439720/PHESPV0931.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91867592;94497717 ERS1195099 ERX1510098 GENOMIC 284275066 2016-06-10 PHESPV0931 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439720/PHESPV0931.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439720/PHESPV0931.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439720 PHESPV0931 ERR1439723 PHESPV0934 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439723 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439723 43da00a835f8ae3b47026ad6579766d7;5a5f078c20005d6ce19d1cf0b467e068 1313 168837029 9c39f658424bc9df33d0bc1af5119eb8;48db589578449e28ac33ab18f1fea233 SAMEA4023992 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439723/ERR1439723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439723/ERR1439723_2.fastq.gz 1848844 WGS PHESPV0934 RANDOM 112169800;114867383 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 52c759e623264538286e9a666b71444d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439723/ERR1439723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439723/ERR1439723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439723/PHESPV0934.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439723/PHESPV0934.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439723/ERR1439723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439723/ERR1439723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439723/PHESPV0934.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439723/PHESPV0934.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118150434;120822646 ERS1195102 ERX1510101 GENOMIC 365627226 2016-06-10 PHESPV0934 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439723/PHESPV0934.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439723/PHESPV0934.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439723 PHESPV0934 ERR1439722 PHESPV0933 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439722 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439722 63951dc463bde27c93116226b06eda66;2db55e1f9e3bbd1a431fceae7aa76e5b 1313 196263522 0bcf4b3825afec0d91b0b24c1a0ec708;99d648d4529575e117d8fe6651980b54 SAMEA4023991 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439722/ERR1439722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439722/ERR1439722_2.fastq.gz 2159489 WGS PHESPV0933 RANDOM 130235422;132704376 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e06be3fcf526bfb8d0b14ea7d29ec459 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439722/ERR1439722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439722/ERR1439722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439722/PHESPV0933.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439722/PHESPV0933.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439722/ERR1439722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439722/ERR1439722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439722/PHESPV0933.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439722/PHESPV0933.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137048882;139499270 ERS1195101 ERX1510100 GENOMIC 427119233 2016-06-10 PHESPV0933 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439722/PHESPV0933.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439722/PHESPV0933.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439722 PHESPV0933 ERR1439728 PHESPV0939 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439728 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439728 5c062ef6b11aca89ebbe8298e06f782d;4aac7b565109d24c2e83c15464e63b86 1313 161878230 abe1c484a2e3a4606c89b66085f6b828;d2f9cc44ade4af893b32f5d38680d8a8 SAMEA4023997 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439728/ERR1439728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439728/ERR1439728_2.fastq.gz 1788751 WGS PHESPV0939 RANDOM 107599651;110351454 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2dc1f549c8efe2d046bb2572bf1aa505 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439728/ERR1439728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439728/ERR1439728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439728/PHESPV0939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439728/PHESPV0939.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439728/ERR1439728_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439728/ERR1439728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439728/PHESPV0939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439728/PHESPV0939.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113393609;116112200 ERS1195107 ERX1510106 GENOMIC 354150856 2016-06-10 PHESPV0939 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439728/PHESPV0939.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439728/PHESPV0939.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439728 PHESPV0939 ERR1439729 PHESPV0940 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439729 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439729 170e6efcbd2964bba000435ade7e1880;cca604381f19ce89f5591d98be8b78b4 1313 156074700 72d563627ab047acf81b322ed72a2fb5;2e1d04a20a73366e75893c314b555dbe SAMEA4023998 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439729/ERR1439729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439729/ERR1439729_2.fastq.gz 1691832 WGS PHESPV0940 RANDOM 102599812;106868680 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a2734fcb5ec9faf25f4afb47d91ec12b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439729/ERR1439729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439729/ERR1439729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439729/PHESPV0940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439729/PHESPV0940.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439729/ERR1439729_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439729/ERR1439729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439729/PHESPV0940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439729/PHESPV0940.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108093816;112297412 ERS1195108 ERX1510107 GENOMIC 334023726 2016-06-10 PHESPV0940 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439729/PHESPV0940.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439729/PHESPV0940.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439729 PHESPV0940 ERR1439730 PHESPV0941 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439730 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439730 b3344bb0ae82f4ef0cd84468988a51c1;65662fbcb9dcbf50fe31e14fa97e1425 1313 196176300 6dea1941e8483304f4d9d3305eaf2edb;a538901046c95bbd0ef216192508a060 SAMEA4023999 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439730/ERR1439730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439730/ERR1439730_2.fastq.gz 2156758 WGS PHESPV0941 RANDOM 130370000;133666178 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 406ed68f67beaa6ba715474d158f2dbf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439730/ERR1439730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439730/ERR1439730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439730/PHESPV0941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439730/PHESPV0941.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439730/ERR1439730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439730/ERR1439730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439730/PHESPV0941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439730/PHESPV0941.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137166534;140439235 ERS1195109 ERX1510108 GENOMIC 426666334 2016-06-10 PHESPV0941 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439730/PHESPV0941.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439730/PHESPV0941.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439730 PHESPV0941 ERR1439734 PHESPV0945 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439734 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439734 44c4b7cef3c7c6e0d7eb932cef5323ac;7e2b36d122ef57ee5ca27579a706cf1d 1313 174535783 50921950b769c9af62ed2e19ae6bc4ad;c945cdaf4fc2a979e9d22679f5b3f44d SAMEA4024003 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439734/ERR1439734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439734/ERR1439734_2.fastq.gz 1920134 WGS PHESPV0945 RANDOM 116323687;118805232 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e012ea7fd4456fd973fda6fbc203f575 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439734/ERR1439734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439734/ERR1439734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439734/PHESPV0945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439734/PHESPV0945.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439734/ERR1439734_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439734/ERR1439734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439734/PHESPV0945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439734/PHESPV0945.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122512016;124974260 ERS1195113 ERX1510112 GENOMIC 380026680 2016-06-10 PHESPV0945 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439734/PHESPV0945.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439734/PHESPV0945.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439734 PHESPV0945 ERR1439731 PHESPV0942 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439731 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439731 11acf0ea77cfb87a8a98f9a72162e3c4;f52453642724bbd3e69b44e738b95840 1313 197363059 9f4bca31a7bfbaa26d93f0022f17e22e;08c7d455d981ac2879612de6f2e06722 SAMEA4024000 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439731/ERR1439731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439731/ERR1439731_2.fastq.gz 2172042 WGS PHESPV0942 RANDOM 131376894;134303669 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 774ae24d9bba9bd3142573d4320d3792 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439731/ERR1439731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439731/ERR1439731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439731/PHESPV0942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439731/PHESPV0942.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439731/ERR1439731_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439731/ERR1439731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439731/PHESPV0942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439731/PHESPV0942.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138249829;141154464 ERS1195110 ERX1510109 GENOMIC 429658454 2016-06-10 PHESPV0942 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439731/PHESPV0942.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439731/PHESPV0942.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439731 PHESPV0942 ERR1439737 PHESPV0948 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439737 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439737 f1f9b9eaa0e42ca8dd5220c50d3e7530;24ce46204e4dd10d4899e4f6111d9a6d 1313 198053627 083a7b88a4d236d5c0143e1f15edfcfb;82d68a1ca8f574a9f6f61d066df2f038 SAMEA4024006 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439737/ERR1439737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439737/ERR1439737_2.fastq.gz 2164701 WGS PHESPV0948 RANDOM 131264300;135292773 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5000f99f5d6c987d7aefd3d31cc04d80 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439737/ERR1439737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439737/ERR1439737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439737/PHESPV0948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439737/PHESPV0948.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439737/ERR1439737_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439737/ERR1439737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439737/PHESPV0948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439737/PHESPV0948.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138047703;142020649 ERS1195116 ERX1510115 GENOMIC 427722748 2016-06-10 PHESPV0948 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439737/PHESPV0948.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439737/PHESPV0948.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439737 PHESPV0948 ERR1439735 PHESPV0946 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439735 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439735 63cf8018c6d4ce6f83efb02ee6381cf4;f1e54c8418bdb55b2e5079be20d13cb3 1313 218915088 d89489776bf2fecd334f4a83b874de57;15eb47652b53f9a6233a9add566085ec SAMEA4024004 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439735/ERR1439735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439735/ERR1439735_2.fastq.gz 2432517 WGS PHESPV0946 RANDOM 146260232;149050781 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f09cefc99e0305e6cdbbf7b4e57c7250 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439735/ERR1439735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439735/ERR1439735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439735/PHESPV0946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439735/PHESPV0946.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439735/ERR1439735_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439735/ERR1439735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439735/PHESPV0946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439735/PHESPV0946.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 153755082;156521558 ERS1195114 ERX1510113 GENOMIC 481541117 2016-06-10 PHESPV0946 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439735/PHESPV0946.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439735/PHESPV0946.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439735 PHESPV0946 ERR1439742 PHESPV0953 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439742 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439742 0af93e1fc5a976e46bc5994ad3a6c9b2;8944effd214892542bfd6ced5423e8d9 1313 170701697 5e7fb24aae74939336c40bc23ca15522;303d0e576907a8b47b43156d55713300 SAMEA4024011 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439742/ERR1439742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439742/ERR1439742_2.fastq.gz 1897590 WGS PHESPV0953 RANDOM 114105420;116314843 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17addd157bed0d055b942220f59b0981 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439742/ERR1439742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439742/ERR1439742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439742/PHESPV0953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439742/PHESPV0953.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439742/ERR1439742_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439742/ERR1439742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439742/PHESPV0953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439742/PHESPV0953.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120245621;122440747 ERS1195121 ERX1510120 GENOMIC 375662312 2016-06-10 PHESPV0953 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439742/PHESPV0953.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439742/PHESPV0953.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439742 PHESPV0953 ERR1439756 PHESPV0967 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439756 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439756 2da078cf52d87ef56d954c9f84d43cd5;728d623b5dd044517c234a986f4d909a 1313 177680586 f2f200f62f3764cad419a62f2fcffaf1;6ccd5483c1ac268a81fa1018ceccabb1 SAMEA4024025 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439756/ERR1439756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439756/ERR1439756_2.fastq.gz 1966468 WGS PHESPV0967 RANDOM 118650726;121139607 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2b529ac96261f03c6745690a36e62c3a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439756/ERR1439756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439756/ERR1439756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439756/PHESPV0967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439756/PHESPV0967.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439756/ERR1439756_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439756/ERR1439756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439756/PHESPV0967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439756/PHESPV0967.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124948652;127413556 ERS1195135 ERX1510134 GENOMIC 389181111 2016-06-10 PHESPV0967 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439756/PHESPV0967.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439756/PHESPV0967.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439756 PHESPV0967 ERR1439746 PHESPV0957 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439746 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439746 3056a6764a8d7279de728c5c73bda8a2;c115da3b76386dd64ef2a510a5930c91 1313 187068977 34f78e8a8aba501581d2ed0aae05a160;a6c69abb5b29c2644dfe594801055c17 SAMEA4024015 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439746/ERR1439746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439746/ERR1439746_2.fastq.gz 2044746 WGS PHESPV0957 RANDOM 123299131;128028653 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2eab50ec715428efb4cd692fb13c2a09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439746/ERR1439746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439746/ERR1439746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439746/PHESPV0957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439746/PHESPV0957.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439746/ERR1439746_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439746/ERR1439746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439746/PHESPV0957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439746/PHESPV0957.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129772185;134443424 ERS1195125 ERX1510124 GENOMIC 404035152 2016-06-10 PHESPV0957 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439746/PHESPV0957.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439746/PHESPV0957.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439746 PHESPV0957 ERR1439753 PHESPV0964 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439753 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439753 8116c531144ef8dac4112080a0cdb9af;899e2cfa1c81c712763583da98766225 1313 186050028 05374ceb52b01589c4adcef69361366e;f2b5efb61f57264c6a146bcc7bec9475 SAMEA4024022 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439753/ERR1439753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439753/ERR1439753_2.fastq.gz 2064732 WGS PHESPV0964 RANDOM 123885768;126888932 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f977baa11b29b6ec64932d2320a8dded ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439753/ERR1439753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439753/ERR1439753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439753/PHESPV0964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439753/PHESPV0964.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439753/ERR1439753_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439753/ERR1439753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439753/PHESPV0964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439753/PHESPV0964.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130457572;133432681 ERS1195132 ERX1510131 GENOMIC 408897070 2016-06-10 PHESPV0964 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439753/PHESPV0964.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439753/PHESPV0964.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439753 PHESPV0964 ERR1439759 PHESPV0970 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439759 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439759 38ea8959d7950d757cfc8fe7a977b89a;833a3950ae2e2bf3d07c84c301213de7 1313 211014275 281ffb29a04bba083bec1c9c5429d651;dde38012b4e63596f814c07719fa00fd SAMEA4024028 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439759/ERR1439759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439759/ERR1439759_2.fastq.gz 2334769 WGS PHESPV0970 RANDOM 140670790;143437032 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline afaeac0dc9a221aff2320d80e2eaf05c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439759/ERR1439759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439759/ERR1439759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439759/PHESPV0970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439759/PHESPV0970.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439759/ERR1439759_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439759/ERR1439759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439759/PHESPV0970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439759/PHESPV0970.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 147915231;150662160 ERS1195138 ERX1510137 GENOMIC 462060131 2016-06-10 PHESPV0970 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439759/PHESPV0970.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439759/PHESPV0970.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439759 PHESPV0970 ERR1439769 PHESPV0980 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439769 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439769 ce9c865c9ed3902e63092837b8a6fa57;f1871e5b28e5ff884edf938fce552989 1313 187924648 45438b5618e2753bf3b82beb2d340c91;4486749d18c7256edd8a6489d4830502 SAMEA4024038 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439769/ERR1439769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439769/ERR1439769_2.fastq.gz 2082516 WGS PHESPV0980 RANDOM 125542708;128062809 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fbc74e3b607dc59ff71db8065be0ce21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439769/ERR1439769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439769/ERR1439769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439769/PHESPV0980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439769/PHESPV0980.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439769/ERR1439769_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439769/ERR1439769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439769/PHESPV0980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439769/PHESPV0980.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132150749;134660009 ERS1195148 ERX1510147 GENOMIC 412395192 2016-06-10 PHESPV0980 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439769/PHESPV0980.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439769/PHESPV0980.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439769 PHESPV0980 ERR1439771 PHESPV0982 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439771 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439771 2e01e5e0cbde374b95ab04afe6e4746a;0a2454b42c4b6dc6311b76f4800e5366 1313 162857542 867c844ba663cdecbd4e60c6817cf480;47889bbf0aa354c29d01e65b75a3fb28 SAMEA4024040 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439771/ERR1439771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439771/ERR1439771_2.fastq.gz 1793493 WGS PHESPV0982 RANDOM 108179124;111769238 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17fa1ec420e0740e74b9e88756b1f433 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439771/ERR1439771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439771/ERR1439771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439771/PHESPV0982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439771/PHESPV0982.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439771/ERR1439771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439771/ERR1439771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439771/PHESPV0982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439771/PHESPV0982.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113996973;117541431 ERS1195150 ERX1510149 GENOMIC 354691693 2016-06-10 PHESPV0982 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439771/PHESPV0982.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439771/PHESPV0982.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439771 PHESPV0982 ERR1439775 PHESPV0986 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439775 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439775 f91f78d70a0ecd12a89ee5d4ea00b47f;3e66b3dfa3c799734297fef8f3fabe8d 1313 197098420 307c96050ff2babc1096037212e8d7c9;ce4bccdcc6088784c2db40650d6b1bc8 SAMEA4024044 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439775/ERR1439775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439775/ERR1439775_2.fastq.gz 2168688 WGS PHESPV0986 RANDOM 131317066;132978153 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4acde7aca89fb6f3978c4c2e713d62fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439775/ERR1439775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439775/ERR1439775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439775/PHESPV0986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439775/PHESPV0986.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439775/ERR1439775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439775/ERR1439775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439775/PHESPV0986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439775/PHESPV0986.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138133528;139791567 ERS1195154 ERX1510153 GENOMIC 429014413 2016-06-10 PHESPV0986 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439775/PHESPV0986.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439775/PHESPV0986.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439775 PHESPV0986 ERR1439784 PHESPV0995 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439784 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439784 2db73585473fcdc6db6e7cf6219ab475;3abf0dd7c765c09b0f712318dce7ca0c 1313 203823010 7e27968ac6b47fe711f0fd5e9b0afd71;f2fbf1c4c0352e41c7750aac43f57460 SAMEA4024053 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439784/ERR1439784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439784/ERR1439784_2.fastq.gz 2246940 WGS PHESPV0995 RANDOM 135768720;137899066 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 55773da2fea9271a1ca406d51bcfedf3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439784/ERR1439784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439784/ERR1439784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439784/PHESPV0995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439784/PHESPV0995.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439784/ERR1439784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439784/ERR1439784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439784/PHESPV0995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439784/PHESPV0995.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142837035;144955840 ERS1195163 ERX1510162 GENOMIC 444605844 2016-06-10 PHESPV0995 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439784/PHESPV0995.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439784/PHESPV0995.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439784 PHESPV0995 ERR1439844 PHESPV1055 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439844 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439844 b76cb55072959f75bdc3552e1a70c372;f47bc3829c1606f62fc8c55adf0e0c8d 1313 149118463 46aac4e1805e04fe9b2369f3473a33f5;eed9c6610f7ac0a77644c7e9e29a9831 SAMEA4024113 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439844/ERR1439844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439844/ERR1439844_2.fastq.gz 1611854 WGS PHESPV1055 RANDOM 97658521;102628644 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30d982c7c0943e8248f676c548f26b64 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439844/ERR1439844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439844/ERR1439844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439844/PHESPV1055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439844/PHESPV1055.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439844/ERR1439844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439844/ERR1439844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439844/PHESPV1055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439844/PHESPV1055.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102990348;107885862 ERS1195223 ERX1510222 GENOMIC 318110311 2016-06-10 PHESPV1055 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439844/PHESPV1055.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439844/PHESPV1055.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439844 PHESPV1055 ERR1439866 PHESPV1077 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439866 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439866 8a103f6ac7f827473893c72c1661eb17;c91d58bff3e3e5e5fb29e6988659f5d1 1313 253951472 dd3a3326c20a2499a3b6cd373cbfb385;40d5f92f93a033b8a7ac2570bdafb242 SAMEA4024135 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439866/ERR1439866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439866/ERR1439866_2.fastq.gz 2723424 WGS PHESPV1077 RANDOM 168551102;170285122 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 38e556801840cc1200f2edf5d130a0eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439866/ERR1439866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439866/ERR1439866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439866/PHESPV1077.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439866/PHESPV1077.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439866/ERR1439866_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439866/ERR1439866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439866/PHESPV1077.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439866/PHESPV1077.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 176826523;178595127 ERS1195245 ERX1510244 GENOMIC 537429032 2016-06-10 PHESPV1077 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439866/PHESPV1077.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439866/PHESPV1077.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439866 PHESPV1077 ERR1439888 PHESPV1099 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439888 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439888 11cb5f3f0f1055b6f86589c2b6ecbca9;96cb3aca744b15c2e98f562291fdac0e 1313 191988391 2806219ec25868bc9182c4b095a5a36b;8b7241abec12636bdc0b18d6fa053c4e SAMEA4024157 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439888/ERR1439888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439888/ERR1439888_2.fastq.gz 2114461 WGS PHESPV1099 RANDOM 127581623;130562226 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c91989be9d87084996e58748a835ffc1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439888/ERR1439888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439888/ERR1439888_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439888/PHESPV1099.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439888/PHESPV1099.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439888/ERR1439888_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439888/ERR1439888_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439888/PHESPV1099.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439888/PHESPV1099.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134281860;137236163 ERS1195267 ERX1510266 GENOMIC 418531662 2016-06-10 PHESPV1099 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439888/PHESPV1099.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439888/PHESPV1099.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439888 PHESPV1099 ERR1439889 PHESPV1100 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439889 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439889 6ef77b9943eb492176cf8d01ebfdf7b9;321618d4779729ea6e29a1d40cc8b577 1313 188212347 433dc473a7c554c644a154544b536839;1dd409f135cb2f8e539d44192b840b9e SAMEA4024158 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439889/ERR1439889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439889/ERR1439889_2.fastq.gz 2067751 WGS PHESPV1100 RANDOM 125319318;128029271 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline edea97cc48fef15a8d0af48ded179e31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439889/ERR1439889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439889/ERR1439889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439889/PHESPV1100.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439889/PHESPV1100.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439889/ERR1439889_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439889/ERR1439889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439889/PHESPV1100.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439889/PHESPV1100.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131910179;134601657 ERS1195268 ERX1510267 GENOMIC 409035002 2016-06-10 PHESPV1100 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439889/PHESPV1100.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439889/PHESPV1100.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439889 PHESPV1100 ERR1439895 PHESPV1106 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439895 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439895 c794d6fa0bbc2a2ce8d2f5a02d065605;ed28f219d6f1ff3dbef1ca0103225112 1313 183615927 a660c813d2b6dfc4a173b913fd52f9ed;c4afb17210c3dade3a82e170d724e472 SAMEA4024164 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439895/ERR1439895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439895/ERR1439895_2.fastq.gz 2055576 WGS PHESPV1106 RANDOM 122221975;123924127 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a96ae85287c2aee8f84c5d6345df8b85 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439895/ERR1439895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439895/ERR1439895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439895/PHESPV1106.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439895/PHESPV1106.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439895/ERR1439895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439895/ERR1439895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439895/PHESPV1106.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439895/PHESPV1106.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128712660;130426839 ERS1195274 ERX1510273 GENOMIC 407485152 2016-06-10 PHESPV1106 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439895/PHESPV1106.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439895/PHESPV1106.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439895 PHESPV1106 ERR1439964 PHESPV1175 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439964 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439964 bb133398b672b785a5f89ade2b06697c;3314a18acb412021dc9da4b693e648df 1313 152936344 731a9c1b5c48e461ddfa83e5d84eff21;0be521b3448ad30aec30710e98ef5f77 SAMEA4024233 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439964/ERR1439964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439964/ERR1439964_2.fastq.gz 1753905 WGS PHESPV1175 RANDOM 100842739;105384720 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 678216253ecd338ca60973f40bf18d3d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439964/ERR1439964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439964/ERR1439964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439964/PHESPV1175.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439964/PHESPV1175.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439964/ERR1439964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439964/ERR1439964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439964/PHESPV1175.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439964/PHESPV1175.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106548235;111019530 ERS1195343 ERX1510342 GENOMIC 347990533 2016-06-10 PHESPV1175 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439964/PHESPV1175.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439964/PHESPV1175.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439964 PHESPV1175 ERR1439971 PHESPV1182 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439971 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439971 4a317a71bee8300f1877c651f6bbfac0;7a531a545edc5e447f21b02db69ab5a2 1313 119294855 5a816a661f859803238147ad104d3487;d19345ed31c3a041591416c5b10d5eb7 SAMEA4024240 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439971/ERR1439971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439971/ERR1439971_2.fastq.gz 1344673 WGS PHESPV1182 RANDOM 77329431;83128749 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c4a041865fe2af28fb5218e42644db79 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439971/ERR1439971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439971/ERR1439971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439971/PHESPV1182.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439971/PHESPV1182.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439971/ERR1439971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439971/ERR1439971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439971/PHESPV1182.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439971/PHESPV1182.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81805207;87494078 ERS1195350 ERX1510349 GENOMIC 266393944 2016-06-10 PHESPV1182 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439971/PHESPV1182.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439971/PHESPV1182.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439971 PHESPV1182 ERR1439984 PHESPV1195 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439984 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439984 6576e9ed7df1730cccfd65a9206bc5c2;8e0abde38b70ae7c093790af893bd858 1313 98464333 78d24e95be69fb6762d5880e99e9df1d;6471b3a4caf2821cd849cc8008ff45ea SAMEA4024253 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439984/ERR1439984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439984/ERR1439984_2.fastq.gz 1090567 WGS PHESPV1195 RANDOM 63994514;68437235 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eccd194ca14b21df16bc88ce9bc292c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439984/ERR1439984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439984/ERR1439984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439984/PHESPV1195.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439984/PHESPV1195.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439984/ERR1439984_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439984/ERR1439984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439984/PHESPV1195.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439984/PHESPV1195.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67764509;72128999 ERS1195363 ERX1510362 GENOMIC 216028003 2016-06-10 PHESPV1195 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439984/PHESPV1195.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439984/PHESPV1195.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439984 PHESPV1195 ERR1439976 PHESPV1187 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439976 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439976 ca8b58b3a2e455ee42d4c25d8df92e7b;d20e4ef42ff97eafb50794b5e81cfbc0 1313 138887141 1a827d5aaabeefc098028cb45bfd4fdb;133b808aade637c5d89fa4241154e393 SAMEA4024245 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439976/ERR1439976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439976/ERR1439976_2.fastq.gz 1595624 WGS PHESPV1187 RANDOM 91552521;95853312 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f85141b317abc99555bea104ade11854 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439976/ERR1439976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439976/ERR1439976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439976/PHESPV1187.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439976/PHESPV1187.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439976/ERR1439976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439976/ERR1439976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439976/PHESPV1187.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439976/PHESPV1187.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96793919;101016953 ERS1195355 ERX1510354 GENOMIC 316676653 2016-06-10 PHESPV1187 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439976/PHESPV1187.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439976/PHESPV1187.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439976 PHESPV1187 ERR1439986 PHESPV1197 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439986 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439986 43c0ea689c45714c38b7ed7482aec51a;2d581931919ba7d5d9427a0056406985 1313 118398962 5ad6f7f10197ae791721c229a9c3173f;fa98859fdf3974c095d44d421e11c0a2 SAMEA4024255 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439986/ERR1439986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439986/ERR1439986_2.fastq.gz 1374955 WGS PHESPV1197 RANDOM 79893925;80831512 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1deb547c66dcfd027ff59a71c01ba073 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439986/ERR1439986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439986/ERR1439986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439986/PHESPV1197.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439986/PHESPV1197.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439986/ERR1439986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439986/ERR1439986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439986/PHESPV1197.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439986/PHESPV1197.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84473805;85397296 ERS1195365 ERX1510364 GENOMIC 272928132 2016-06-10 PHESPV1197 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439986/PHESPV1197.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439986/PHESPV1197.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439986 PHESPV1197 ERR1439995 PHESPV1206 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439995 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439995 b613e056a43318a86c2cfdafc0dbe2c6;79b79002684968d09dd0fafc5e51ce9a 1313 119338725 a94414b4fdbb7c08f235d3e7675db2b9;7ed975eead5ea2588414b45e61dc13d8 SAMEA4024264 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439995/ERR1439995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439995/ERR1439995_2.fastq.gz 1343741 WGS PHESPV1206 RANDOM 77359002;83532855 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 182fcbb572f6d7da5d34bf8e9399bc10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439995/ERR1439995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439995/ERR1439995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439995/PHESPV1206.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439995/PHESPV1206.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439995/ERR1439995_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439995/ERR1439995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439995/PHESPV1206.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439995/PHESPV1206.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81835312;87892169 ERS1195374 ERX1510373 GENOMIC 266178630 2016-06-10 PHESPV1206 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439995/PHESPV1206.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439995/PHESPV1206.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439995 PHESPV1206 ERR1440002 PHESPV1213 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440002 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440002 a0f0a8e60a568d9ad119fa7d60ec5ad2;4c7df1333c86b07d1d1955b087630593 1313 117098894 265fdc82d2310240cc47498d1ec649d6;df141630c10e8167f9f42d51d57da5ce SAMEA4024271 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440002/ERR1440002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440002/ERR1440002_2.fastq.gz 1341541 WGS PHESPV1213 RANDOM 77607503;81114506 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e1b478312cd79a8b3da16d6eff2148eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440002/ERR1440002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440002/ERR1440002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440002/PHESPV1213.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440002/PHESPV1213.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440002/ERR1440002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440002/ERR1440002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440002/PHESPV1213.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440002/PHESPV1213.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82109949;85544510 ERS1195381 ERX1510380 GENOMIC 266379263 2016-06-10 PHESPV1213 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440002/PHESPV1213.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440002/PHESPV1213.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440002 PHESPV1213 ERR1440006 PHESPV1217 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440006 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440006 882041588ea9199f2537c2ca5549b3a8;ff667735cc08484c64d5d4a991abf2c1 1313 173474684 367a728452029960ce690065c6d71d50;8b425f7607f2dad370517854670798e6 SAMEA4024275 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440006/ERR1440006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440006/ERR1440006_2.fastq.gz 1916637 WGS PHESPV1217 RANDOM 115929344;118646069 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f63946412180809628ab650a1743550 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440006/ERR1440006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440006/ERR1440006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440006/PHESPV1217.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440006/PHESPV1217.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440006/ERR1440006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440006/ERR1440006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440006/PHESPV1217.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440006/PHESPV1217.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122085185;124756661 ERS1195385 ERX1510384 GENOMIC 379700112 2016-06-10 PHESPV1217 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440006/PHESPV1217.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440006/PHESPV1217.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440006 PHESPV1217 ERR1440030 PHESPV1241 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440030 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440030 05feb7a4b2eb336636a0f0bbf86e7c91;e0ed79be3ce2f40a71d6b83bfe3563ae 1313 100033928 fbed5f15f26718a699a824b56b2a03f8;f248967ffddb346329c550418494e319 SAMEA4024299 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440030/ERR1440030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440030/ERR1440030_2.fastq.gz 1103128 WGS PHESPV1241 RANDOM 67082301;68356065 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 04ed0f98197fb66eb529167f072d7e89 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440030/ERR1440030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440030/ERR1440030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440030/PHESPV1241.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440030/PHESPV1241.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440030/ERR1440030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440030/ERR1440030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440030/PHESPV1241.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440030/PHESPV1241.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70882668;72134035 ERS1195409 ERX1510408 GENOMIC 218589571 2016-06-10 PHESPV1241 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440030/PHESPV1241.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440030/PHESPV1241.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440030 PHESPV1241 ERR1440014 PHESPV1225 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440014 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440014 ada0f44c58bcf41292e13953fcf2bec9;68bd5a357826547bad757565548dae3d 1313 124068022 db33d4657c3ba660e088f5e015323543;47c34af497698ca4b024d7bcc214f78f SAMEA4024283 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440014/ERR1440014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440014/ERR1440014_2.fastq.gz 1408775 WGS PHESPV1225 RANDOM 81492804;86196910 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4c9aa37ce5b4744c25ab28d20775c504 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440014/ERR1440014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440014/ERR1440014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440014/PHESPV1225.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440014/PHESPV1225.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440014/ERR1440014_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440014/ERR1440014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440014/PHESPV1225.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440014/PHESPV1225.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86176429;90787975 ERS1195393 ERX1510392 GENOMIC 279385977 2016-06-10 PHESPV1225 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440014/PHESPV1225.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440014/PHESPV1225.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440014 PHESPV1225 ERR1440049 PHESPV1260 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440049 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440049 41da3c4f15723e1ecf72c29c97b28980;75e33f21d61af3611c77043c112eb364 1313 163442026 88673bb5f187604d478e9d05864b2280;476f147da1708f064b33e1b609cc36fd SAMEA4024318 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440049/ERR1440049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440049/ERR1440049_2.fastq.gz 1797751 WGS PHESPV1260 RANDOM 109269315;111658259 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline da62507a4446de0b4172af028c75dbdf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440049/ERR1440049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440049/ERR1440049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440049/PHESPV1260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440049/PHESPV1260.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440049/ERR1440049_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440049/ERR1440049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440049/PHESPV1260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440049/PHESPV1260.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115146704;117511264 ERS1195428 ERX1510427 GENOMIC 356165143 2016-06-10 PHESPV1260 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440049/PHESPV1260.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440049/PHESPV1260.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440049 PHESPV1260 ERR1440063 PHESPV1274 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440063 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440063 651daa4fb886f476a336bcfadcd8bf59;48cc79d0816ab692f4a6cc8ffe59c4b6 1313 85412376 2bb288497df5914b428790b81cc73b48;3188bb3c4aefe4807c7a40d005e2268d SAMEA4024332 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440063/ERR1440063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440063/ERR1440063_2.fastq.gz 967014 WGS PHESPV1274 RANDOM 54308350;56135967 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dcd48b2a4753f95acfd54de2bf2f54d2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440063/ERR1440063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440063/ERR1440063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440063/PHESPV1274.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440063/PHESPV1274.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440063/ERR1440063_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440063/ERR1440063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440063/PHESPV1274.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440063/PHESPV1274.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57537579;59307511 ERS1195442 ERX1510441 GENOMIC 190270389 2016-06-10 PHESPV1274 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440063/PHESPV1274.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440063/PHESPV1274.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440063 PHESPV1274 ERR1440071 PHESPV1282 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440071 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440071 90b8e474e5da3db347b12a953e241432;5344b321f3376af26281452c3d27a416 1313 135168297 3ef775696a61d46670551693531614ab;39a16ffd25ebf60246b158dc112f3ab0 SAMEA4024340 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440071/ERR1440071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440071/ERR1440071_2.fastq.gz 1550344 WGS PHESPV1282 RANDOM 90083988;93261583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 049c22735c7ff2f2a757e8b93047da5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440071/ERR1440071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440071/ERR1440071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440071/PHESPV1282.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440071/PHESPV1282.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440071/ERR1440071_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440071/ERR1440071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440071/PHESPV1282.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440071/PHESPV1282.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95171928;98309992 ERS1195450 ERX1510449 GENOMIC 307955637 2016-06-10 PHESPV1282 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440071/PHESPV1282.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440071/PHESPV1282.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440071 PHESPV1282 ERR1440082 PHESPV1293 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440082 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440082 cb72bc082bd7cd4c2ecc99fd69a7c39d;304fc48d6f23c1778bdf026c75f80403 1313 93270068 09114079c4b5110a657bc5916a0a4600;5c234482957b013c7beda6cca102152d SAMEA4024351 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440082/ERR1440082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440082/ERR1440082_2.fastq.gz 1037219 WGS PHESPV1293 RANDOM 60908421;64666254 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9134cce875fa5b63fb11747f96594e55 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440082/ERR1440082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440082/ERR1440082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440082/PHESPV1293.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440082/PHESPV1293.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440082/ERR1440082_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440082/ERR1440082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440082/PHESPV1293.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440082/PHESPV1293.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64489222;68206393 ERS1195461 ERX1510460 GENOMIC 205626594 2016-06-10 PHESPV1293 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440082/PHESPV1293.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440082/PHESPV1293.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440082 PHESPV1293 ERR1440088 PHESPV1299 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440088 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440088 3fb720f183b9140376611f9efdcc3f32;082ef3b31249764e7c5311db7b19dc91 1313 140428412 819c3e4e1558a748a9cbe1bea0a71949;58bb2a2a409d3c525bdd22c426b8ec2d SAMEA4024357 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440088/ERR1440088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440088/ERR1440088_2.fastq.gz 1608968 WGS PHESPV1299 RANDOM 92937793;96962456 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 937372ada2d3d4736326c8ca10f12d84 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440088/ERR1440088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440088/ERR1440088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440088/PHESPV1299.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440088/PHESPV1299.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440088/ERR1440088_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440088/ERR1440088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440088/PHESPV1299.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440088/PHESPV1299.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98229524;102211763 ERS1195467 ERX1510466 GENOMIC 319408293 2016-06-10 PHESPV1299 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440088/PHESPV1299.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440088/PHESPV1299.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440088 PHESPV1299 ERR1440106 PHESPV1317 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440106 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440106 2477962e7fc14813a8f356137919fb48;788a4d45f4a87f455d88c9aba6935075 1313 118707738 78a525451e0a798fbcea70c0c8d6df8e;44c1097a2b2156c0b84887d35556ab96 SAMEA4024375 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440106/ERR1440106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440106/ERR1440106_2.fastq.gz 1343077 WGS PHESPV1317 RANDOM 78704503;81851517 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5df3739dcfcbd63bd49ceaf090c345fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440106/ERR1440106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440106/ERR1440106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440106/PHESPV1317.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440106/PHESPV1317.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440106/ERR1440106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440106/ERR1440106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440106/PHESPV1317.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440106/PHESPV1317.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83259422;86306821 ERS1195485 ERX1510484 GENOMIC 266610906 2016-06-10 PHESPV1317 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440106/PHESPV1317.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440106/PHESPV1317.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440106 PHESPV1317 ERR1440158 PHESPV1371 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440158 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440158 f0e1e2157896d272381688bdcb3cda72;8b096d6f978b762bf9965792af65f5a6 1313 150067343 cb0c0c0ebc5ed1ff9a988496a8fd83eb;06aef5cb0b57ca4aa22e489a21199e66 SAMEA4024427 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440158/ERR1440158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440158/ERR1440158_2.fastq.gz 1683264 WGS PHESPV1371 RANDOM 98436926;104180161 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed78250276a40e4a582efb3ca5e01609 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440158/ERR1440158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440158/ERR1440158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440158/PHESPV1371.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440158/PHESPV1371.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440158/ERR1440158_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440158/ERR1440158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440158/PHESPV1371.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440158/PHESPV1371.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104006034;109609817 ERS1195537 ERX1510536 GENOMIC 333796829 2016-06-10 PHESPV1371 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440158/PHESPV1371.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440158/PHESPV1371.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440158 PHESPV1371 ERR1440212 PHESPV1426 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440212 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440212 b9a08ae6893c5a403cd98e5cf550b70d;3dd0759af755fd2fb7e62ed46130a2a5 1313 171151054 ab9700ae06ae3e2535414c0e4b55184f;8b70e5a71fc047898340e9ab49ccd1c9 SAMEA4024481 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440212/ERR1440212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440212/ERR1440212_2.fastq.gz 1880854 WGS PHESPV1426 RANDOM 114081517;116740971 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 08ed3621bc320b4d2cf631119bb8d0ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440212/ERR1440212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440212/ERR1440212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440212/PHESPV1426.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440212/PHESPV1426.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440212/ERR1440212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440212/ERR1440212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440212/PHESPV1426.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440212/PHESPV1426.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120164431;122806218 ERS1195591 ERX1510590 GENOMIC 372296043 2016-06-10 PHESPV1426 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440212/PHESPV1426.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440212/PHESPV1426.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440212 PHESPV1426 ERR1440175 PHESPV1388 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440175 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440175 59c7182849f82e7563c32fb3630d3cd9;39706b69607694baeb7b7db52292208b 1313 169055723 f387f29106124aefebb39e2781da6123;237f1b002a43e809fded6c27069e33c3 SAMEA4024444 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440175/ERR1440175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440175/ERR1440175_2.fastq.gz 1748486 WGS PHESPV1388 RANDOM 110234530;115163956 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c5453cdf0c68f9f392db2f942be8cbc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440175/ERR1440175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440175/ERR1440175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440175/PHESPV1388.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440175/PHESPV1388.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440175/ERR1440175_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440175/ERR1440175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440175/PHESPV1388.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440175/PHESPV1388.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115983863;120812834 ERS1195554 ERX1510553 GENOMIC 343634308 2016-06-10 PHESPV1388 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440175/PHESPV1388.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440175/PHESPV1388.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440175 PHESPV1388 ERR1440359 PHESPV1574 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440359 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440359 6fa78fe6e2c1b5bff6dea02f829a1aad;e08f4b4179845d0c1dcd9be0e8a56b2d 1313 153821375 125fa0aeb5a1a0fd869069ed73a98a64;1350cfacdc44ead2d62d4d84284c14c4 SAMEA4024628 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440359/ERR1440359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440359/ERR1440359_2.fastq.gz 1662332 WGS PHESPV1574 RANDOM 101730491;105342458 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6aeedd935210d24412934d18699b8e22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440359/ERR1440359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440359/ERR1440359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440359/PHESPV1574.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440359/PHESPV1574.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440359/ERR1440359_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440359/ERR1440359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440359/PHESPV1574.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440359/PHESPV1574.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107184252;110733585 ERS1195738 ERX1510737 GENOMIC 328170581 2016-06-10 PHESPV1574 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440359/PHESPV1574.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440359/PHESPV1574.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440359 PHESPV1574 ERR1440278 PHESPV1493 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440278 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440278 fdad9e96c0641c73c7cc3f2cfcc20095;70d0b39aa980d77bb6902b8c7406d8f4 1313 160725327 dc57fbd2a5a1a085575acc02e44d9c28;8030ebdb56d5792acfcab5b3ec42f92d SAMEA4024547 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440278/ERR1440278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440278/ERR1440278_2.fastq.gz 1942971 WGS PHESPV1493 RANDOM 108723871;111812960 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e3d3e5c9eb39caa3eb83e60825a4c3e6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440278/ERR1440278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440278/ERR1440278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440278/PHESPV1493.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440278/PHESPV1493.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440278/ERR1440278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440278/ERR1440278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440278/PHESPV1493.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440278/PHESPV1493.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114961247;118044529 ERS1195657 ERX1510656 GENOMIC 386098972 2016-06-10 PHESPV1493 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440278/PHESPV1493.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440278/PHESPV1493.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440278 PHESPV1493 ERR1440803 PHESPV2018 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440803 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440803 2bd633450ae9f64ad3d88e4905f4dd9c;500a774c5f4d80385087fa3e247b359b 1313 144988722 b2dc52b350f0867c71350c7d16e6536f;85a911d13fb9eb9817f4225519a6091f SAMEA4025072 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440803/ERR1440803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440803/ERR1440803_2.fastq.gz 1558830 WGS PHESPV2018 RANDOM 102715577;106190768 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c6a1e106040426be6a69f5774210b9b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440803/ERR1440803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440803/ERR1440803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440803/PHESPV2018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440803/PHESPV2018.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440803/ERR1440803_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440803/ERR1440803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440803/PHESPV2018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440803/PHESPV2018.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98634368;102093205 ERS1196182 ERX1511181 GENOMIC 302784241 2016-06-10 PHESPV2018 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440803/PHESPV2018.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440803/PHESPV2018.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440803 PHESPV2018 ERR1440856 PHESPV2071 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440856 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440856 083102d78b73c7f40f2284870cb9740d;9dcfd6a2e413683d46a7de83db053493 1313 511157719 e312b054d90cfe45cc1cf6550958d616;150e79e64af7402cde2028523c7be865 SAMEA4025125 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440856/ERR1440856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440856/ERR1440856_2.fastq.gz 5745778 WGS PHESPV2071 RANDOM 364333303;377849281 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2599d913fba637717ca389b163be7d03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440856/ERR1440856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440856/ERR1440856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440856/PHESPV2071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440856/PHESPV2071.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440856/ERR1440856_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440856/ERR1440856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440856/PHESPV2071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440856/PHESPV2071.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 348051376;361595077 ERS1196235 ERX1511234 GENOMIC 1121888721 2016-06-10 PHESPV2071 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440856/PHESPV2071.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440856/PHESPV2071.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440856 PHESPV2071 ERR1438922 PHESPV0132 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438922 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438922 99cac0dfa9f561576792fcedea701025;8a9238ddba49192c4e01be5335fa2d9d 1313 232811773 3c138c7a94fa848da89e72b0a00e7d31;3a184351809b0b1fc365c9b7a745608d SAMEA4023191 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438922/ERR1438922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438922/ERR1438922_2.fastq.gz 2578771 WGS PHESPV0132 RANDOM 153835448;159637853 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f1e9ab0b737ef6b71d20ec682b7dc3d4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438922/ERR1438922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438922/ERR1438922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438922/PHESPV0132.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438922/PHESPV0132.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438922/ERR1438922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438922/ERR1438922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438922/PHESPV0132.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438922/PHESPV0132.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 161698071;167470681 ERS1194301 ERX1509300 GENOMIC 510975749 2016-06-10 PHESPV0132 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438922/PHESPV0132.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438922/PHESPV0132.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438922 PHESPV0132 ERR1440717 PHESPV1932 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440717 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440717 565d8ad4c6e37a7d736754eb3627bc38;ce85fc3c217fb9f5877dba60cfe93e53 1313 125177455 c024def0f6033674dbc09260b5e49f76;59c779f996c72746cc62d2b0d59275eb SAMEA4024986 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440717/ERR1440717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440717/ERR1440717_2.fastq.gz 1374675 WGS PHESPV1932 RANDOM 89694267;89522403 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d1f3e3e89c39b05b79cc5be80d4ac90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440717/ERR1440717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440717/ERR1440717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440717/PHESPV1932.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440717/PHESPV1932.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440717/ERR1440717_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440717/ERR1440717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440717/PHESPV1932.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440717/PHESPV1932.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86086199;85912603 ERS1196096 ERX1511095 GENOMIC 265702542 2016-06-10 PHESPV1932 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440717/PHESPV1932.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440717/PHESPV1932.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440717 PHESPV1932 ERR1439001 PHESPV0212 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439001 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439001 dafad8b846dae3e2bf65dfb718484b90;3ca04996e667bed7c96d331db3092e38 1313 153943475 945c0ecee5cd82a09f0e4637b4517d8a;71e0fbd2457eef6ec3a0a558e8bc1faf SAMEA4023270 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439001/ERR1439001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439001/ERR1439001_2.fastq.gz 1648555 WGS PHESPV0212 RANDOM 100238202;104797084 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 968b19bf562b224456f1315ffe53760c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439001/ERR1439001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439001/ERR1439001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439001/PHESPV0212.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439001/PHESPV0212.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439001/ERR1439001_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439001/ERR1439001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439001/PHESPV0212.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439001/PHESPV0212.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105638462;110028740 ERS1194380 ERX1509379 GENOMIC 324953407 2016-06-10 PHESPV0212 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439001/PHESPV0212.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439001/PHESPV0212.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439001 PHESPV0212 ERR1439009 PHESPV0220 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439009 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439009 ea18828561dacc4e7c601b95eecbf227;71af79b5f1dfb0207e19aabe8c3f5536 1313 373806419 21eb962d9143d9161d1ace09312f19a3;6a00c30e33a7fb05db0c5a94f91d4867 SAMEA4023278 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439009/ERR1439009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439009/ERR1439009_2.fastq.gz 2975724 WGS PHESPV0220 RANDOM 231720590;234150556 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fa51f012142755fb713a743a94d6337f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439009/ERR1439009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439009/ERR1439009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439009/PHESPV0220.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439009/PHESPV0220.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439009/ERR1439009_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439009/ERR1439009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439009/PHESPV0220.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439009/PHESPV0220.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 240516589;242918546 ERS1194388 ERX1509387 GENOMIC 576602830 2016-06-10 PHESPV0220 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439009/PHESPV0220.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439009/PHESPV0220.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439009 PHESPV0220 ERR1439017 PHESPV0228 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439017 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439017 0d393058fcff52978e904a6bb58ea1b2;e4965b084797a925d335db225aba101c 1313 302958319 a288901c8b4faee5e9696a19bb21e4fb;8e994131ee227802357b4c0059ab3598 SAMEA4023286 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439017/ERR1439017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439017/ERR1439017_2.fastq.gz 2389159 WGS PHESPV0228 RANDOM 184928601;192890309 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8cea7edf6b8143ea5a5413dbf7b671c6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439017/ERR1439017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439017/ERR1439017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439017/PHESPV0228.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439017/PHESPV0228.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439017/ERR1439017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439017/ERR1439017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439017/PHESPV0228.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439017/PHESPV0228.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 192203782;200052449 ERS1194396 ERX1509395 GENOMIC 460694969 2016-06-10 PHESPV0228 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439017/PHESPV0228.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439017/PHESPV0228.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439017 PHESPV0228 ERR1439018 PHESPV0229 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439018 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439018 f87d3f87b66115403efcada9366c9914;03d87841f0817f6cdf4fd3bcc2a8a0b6 1313 408744196 20cb6d965cd7df274ec702560f12cdf6;2a133efd4771fe5a4f3f55fefc022d34 SAMEA4023287 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439018/ERR1439018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439018/ERR1439018_2.fastq.gz 3247811 WGS PHESPV0229 RANDOM 253378603;256521149 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 94f7d7d1c744915bd83e7bef153806a6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439018/ERR1439018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439018/ERR1439018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439018/PHESPV0229.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439018/PHESPV0229.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439018/ERR1439018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439018/ERR1439018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439018/PHESPV0229.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439018/PHESPV0229.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 263025087;266130142 ERS1194397 ERX1509396 GENOMIC 628623771 2016-06-10 PHESPV0229 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439018/PHESPV0229.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439018/PHESPV0229.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439018 PHESPV0229 ERR1439023 PHESPV0234 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439023 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439023 04c1e0161e62253030dd085e25eb8e35;3f247564b2e89312590869090b79bab1 1313 468395511 e95b7f810681226fafb2d885eb5ffdf0;6248ef26d4b4d3294f60394deb6ec4df SAMEA4023292 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439023/ERR1439023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439023/ERR1439023_2.fastq.gz 3656320 WGS PHESPV0234 RANDOM 303872105;312974147 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 83d07bff7ec9510a354278ae48fe0f55 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439023/ERR1439023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439023/ERR1439023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439023/PHESPV0234.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439023/PHESPV0234.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439023/ERR1439023_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439023/ERR1439023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439023/PHESPV0234.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439023/PHESPV0234.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 294065707;303159897 ERS1194402 ERX1509401 GENOMIC 706214008 2016-06-10 PHESPV0234 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439023/PHESPV0234.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439023/PHESPV0234.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439023 PHESPV0234 ERR1439026 PHESPV0237 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439026 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439026 bb15c297eb32ac920d490719ef1defa6;30c4807a9e9a281196c3c2482721f418 1313 442653669 01c618a4c84d68cca6355b0f29a60685;7c7efe6cf7c1f38ded67658a85cdeee4 SAMEA4023295 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439026/ERR1439026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439026/ERR1439026_2.fastq.gz 3456502 WGS PHESPV0237 RANDOM 289723060;294183835 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 33fbd2f58dcf0d9d8a4ead432198bdd2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439026/ERR1439026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439026/ERR1439026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439026/PHESPV0237.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439026/PHESPV0237.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439026/ERR1439026_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439026/ERR1439026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439026/PHESPV0237.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439026/PHESPV0237.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 280471701;284914218 ERS1194405 ERX1509404 GENOMIC 668507957 2016-06-10 PHESPV0237 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439026/PHESPV0237.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439026/PHESPV0237.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439026 PHESPV0237 ERR1439036 PHESPV0247 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439036 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439036 08442333c080d71dee7635185aab7cdd;88a28a44fa16f8fee43bee48f15c37a7 1313 117782762 33fe6b67659934e4a87a0ffd6ae09dea;b86ac62093a5a0cde074e6f5ee198b7e SAMEA4023305 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439036/ERR1439036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439036/ERR1439036_2.fastq.gz 993829 WGS PHESPV0247 RANDOM 71407295;75133644 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e0fe1069a6f256032585fd0dafdf55a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439036/ERR1439036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439036/ERR1439036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439036/PHESPV0247.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439036/PHESPV0247.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439036/ERR1439036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439036/ERR1439036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439036/PHESPV0247.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439036/PHESPV0247.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74827097;78559890 ERS1194415 ERX1509414 GENOMIC 194604626 2016-06-10 PHESPV0247 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439036/PHESPV0247.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439036/PHESPV0247.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439036 PHESPV0247 ERR1439051 PHESPV0262 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439051 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439051 05eb38e40143c68eb37f0e2b69269023;babd402836e2e0a4c9f106b71c76fabb 1313 141907312 cb5425ec7a272e923b9d0187afab64b3;fe1022456b5ab49383408dbd044872ee SAMEA4023320 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439051/ERR1439051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439051/ERR1439051_2.fastq.gz 1199655 WGS PHESPV0262 RANDOM 86327230;90592279 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed9d9ebdc2e7b92bd8cdd6201ba3711a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439051/ERR1439051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439051/ERR1439051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439051/PHESPV0262.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439051/PHESPV0262.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439051/ERR1439051_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439051/ERR1439051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439051/PHESPV0262.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439051/PHESPV0262.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90380643;94656780 ERS1194430 ERX1509429 GENOMIC 235211658 2016-06-10 PHESPV0262 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439051/PHESPV0262.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439051/PHESPV0262.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439051 PHESPV0262 ERR1439181 PHESPV0392 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439181 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439181 47d5bf7192500e994142e547b04fb3e1;134acd75e8b80981c15f02470568d74c 1313 221270058 8bedce4b3f2fc48aba8aa63970243a26;c4e14da8a3d9e789b8acf1bf35153b4f SAMEA4023450 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439181/ERR1439181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439181/ERR1439181_2.fastq.gz 2728363 WGS PHESPV0392 RANDOM 149918868;153718742 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 93f5b890e9243836b52b88073c63aadc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439181/ERR1439181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439181/ERR1439181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439181/PHESPV0392.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439181/PHESPV0392.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439181/ERR1439181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439181/ERR1439181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439181/PHESPV0392.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439181/PHESPV0392.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 158309313;162075376 ERS1194560 ERX1509559 GENOMIC 533574714 2016-06-10 PHESPV0392 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439181/PHESPV0392.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439181/PHESPV0392.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439181 PHESPV0392 ERR1439182 PHESPV0393 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439182 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439182 fae2d2e1a36bff108e953d4d867e9f7d;a5ba4d9c9da1925d97222e05083eab37 1313 93888894 316b85b869f521261355a89a8c4a130b;88347b62c763a10e5d9fe696c6145007 SAMEA4023451 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439182/ERR1439182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439182/ERR1439182_2.fastq.gz 784785 WGS PHESPV0393 RANDOM 56035578;60765643 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e1339fed2553348f918da804f61fb8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439182/ERR1439182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439182/ERR1439182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439182/PHESPV0393.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439182/PHESPV0393.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439182/ERR1439182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439182/ERR1439182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439182/PHESPV0393.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439182/PHESPV0393.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58805575;63522233 ERS1194561 ERX1509560 GENOMIC 153435025 2016-06-10 PHESPV0393 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439182/PHESPV0393.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439182/PHESPV0393.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439182 PHESPV0393 ERR1439235 PHESPV0446 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439235 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439235 27dfe97d4881aeccaf3084dfe48a621d;df9ca21d7fc6e81622bc800cc25cc256 1313 204185241 beb416a84dd95d59533a7983ae0b6651;b283b5d071f42f84c43805b6a489a0b1 SAMEA4023504 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439235/ERR1439235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439235/ERR1439235_2.fastq.gz 2503259 WGS PHESPV0446 RANDOM 137701387;142235381 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c7de503ac2d1c143d82f195347e8303 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439235/ERR1439235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439235/ERR1439235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439235/PHESPV0446.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439235/PHESPV0446.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439235/ERR1439235_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439235/ERR1439235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439235/PHESPV0446.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439235/PHESPV0446.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 145477263;149966834 ERS1194614 ERX1509613 GENOMIC 488998741 2016-06-10 PHESPV0446 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439235/PHESPV0446.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439235/PHESPV0446.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439235 PHESPV0446 ERR1439243 PHESPV0454 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439243 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439243 ab4661ccf37142fe30fd12c2df6608a4;4ee2399dd65ff50115129baf7b95a453 1313 257943708 da118ccdbba7cd69e0d1049bbcadfab6;f43d3bb69b4fb8b2c19547a81999eced SAMEA4023512 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439243/ERR1439243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439243/ERR1439243_2.fastq.gz 3181199 WGS PHESPV0454 RANDOM 174847971;179358714 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a739610d4a53861d76e3eefda03b52d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439243/ERR1439243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439243/ERR1439243_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439243/PHESPV0454.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439243/PHESPV0454.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439243/ERR1439243_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439243/ERR1439243_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439243/PHESPV0454.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439243/PHESPV0454.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 184531611;189046558 ERS1194622 ERX1509621 GENOMIC 622198407 2016-06-10 PHESPV0454 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439243/PHESPV0454.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439243/PHESPV0454.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439243 PHESPV0454 ERR1439242 PHESPV0453 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439242 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439242 8e6600f571f19fed40e56b005acf5d6c;f7eded8e3597ea6af462d351b4f8706c 1313 218295591 fd04ed972abb2b26bfcb2b1079770cc5;e865b0be0b6a8a0b00387300f31e4dac SAMEA4023511 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439242/ERR1439242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439242/ERR1439242_2.fastq.gz 2665048 WGS PHESPV0453 RANDOM 147409591;151541240 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a91dcc728061e5bee3fe4e6088a4cdbb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439242/ERR1439242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439242/ERR1439242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439242/PHESPV0453.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439242/PHESPV0453.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439242/ERR1439242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439242/ERR1439242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439242/PHESPV0453.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439242/PHESPV0453.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 155645111;159723920 ERS1194621 ERX1509620 GENOMIC 520299585 2016-06-10 PHESPV0453 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439242/PHESPV0453.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439242/PHESPV0453.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439242 PHESPV0453 ERR1439266 PHESPV0477 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439266 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439266 26886d776a00abb22c240e564ba09050;167213206e5cc2331f14597600d9d50e 1313 247997888 5f7aebb1d5598a67891e004b5fba7e38;87cf886c6a00bc7147ca5b72e068050c SAMEA4023535 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439266/ERR1439266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439266/ERR1439266_2.fastq.gz 3047020 WGS PHESPV0477 RANDOM 167210550;172782859 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10a21d2f51de92f4931577a95373936c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439266/ERR1439266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439266/ERR1439266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439266/PHESPV0477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439266/PHESPV0477.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439266/ERR1439266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439266/ERR1439266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439266/PHESPV0477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439266/PHESPV0477.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 176497267;182028454 ERS1194645 ERX1509644 GENOMIC 595766408 2016-06-10 PHESPV0477 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439266/PHESPV0477.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439266/PHESPV0477.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439266 PHESPV0477 ERR1439299 PHESPV0510 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439299 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439299 20ddd5bc652ff2b2810f07f0e6eb749e;894de26e7fbaa33798e41577146711cd 1313 194159514 d5dde45504da2cfe7c201e9e9f133522;7757841b85c8f574c711c3c32585cc94 SAMEA4023568 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439299/ERR1439299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439299/ERR1439299_2.fastq.gz 2388047 WGS PHESPV0510 RANDOM 131142077;134887250 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bad7aeb811c06f041e6b496148cc576e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439299/ERR1439299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439299/ERR1439299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439299/PHESPV0510.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439299/PHESPV0510.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439299/ERR1439299_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439299/ERR1439299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439299/PHESPV0510.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439299/PHESPV0510.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138617985;142309955 ERS1194678 ERX1509677 GENOMIC 467103995 2016-06-10 PHESPV0510 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439299/PHESPV0510.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439299/PHESPV0510.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439299 PHESPV0510 ERR1439310 PHESPV0521 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439310 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439310 44ae2a7327dd026321891ce104699cdd;8f48df00d9fd18885d9bd8fadd7a96da 1313 160214408 9669df4dda3417337cc176d4a4cfc59b;0a9a7568f7cb9dc35cde0e9781f53da0 SAMEA4023579 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439310/ERR1439310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439310/ERR1439310_2.fastq.gz 1963897 WGS PHESPV0521 RANDOM 108590377;111044172 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3d6299b11d4beb742540858f2a6512b2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439310/ERR1439310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439310/ERR1439310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439310/PHESPV0521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439310/PHESPV0521.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439310/ERR1439310_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439310/ERR1439310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439310/PHESPV0521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439310/PHESPV0521.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114903784;117311216 ERS1194689 ERX1509688 GENOMIC 383724741 2016-06-10 PHESPV0521 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439310/PHESPV0521.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439310/PHESPV0521.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439310 PHESPV0521 ERR1439313 PHESPV0524 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439313 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439313 070f734030a975d1754bcdc191bcda26;7f64b7f7dd06e1871392349379ea74ea 1313 184030497 423a23742ec9dcdbae58381ba53082b1;ccbc1ec293bc9f19dba1beb5d3a39159 SAMEA4023582 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439313/ERR1439313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439313/ERR1439313_2.fastq.gz 2254512 WGS PHESPV0524 RANDOM 124006382;128185299 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 408f8e67f690b09303c7d4befc1b0901 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439313/ERR1439313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439313/ERR1439313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439313/PHESPV0524.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439313/PHESPV0524.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439313/ERR1439313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439313/ERR1439313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439313/PHESPV0524.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439313/PHESPV0524.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131077154;135204130 ERS1194692 ERX1509691 GENOMIC 440432712 2016-06-10 PHESPV0524 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439313/PHESPV0524.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439313/PHESPV0524.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439313 PHESPV0524 ERR1439371 PHESPV0582 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439371 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439371 b072654d38490aca5d25a0e6377393f1;aa8356e4f628f5914a768d3e4a9b9445 1313 255996669 704fcdb7da121929262977099d57504b;39a4bb8bb0f3fff2a761b55c39d39af6 SAMEA4023640 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439371/ERR1439371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439371/ERR1439371_2.fastq.gz 3229082 WGS PHESPV0582 RANDOM 173894138;178756906 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6afe0e60db4e204b90873b305114f4c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439371/ERR1439371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439371/ERR1439371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439371/PHESPV0582.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439371/PHESPV0582.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439371/ERR1439371_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439371/ERR1439371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439371/PHESPV0582.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439371/PHESPV0582.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 183553375;188457551 ERS1194750 ERX1509749 GENOMIC 634619023 2016-06-10 PHESPV0582 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439371/PHESPV0582.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439371/PHESPV0582.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439371 PHESPV0582 ERR1439393 PHESPV0604 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439393 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439393 8a016cfedfc49fc151804d01d08e78e5;f70004ac45cb9a1df853c4b4c6673320 1313 213294694 368647b8312509cbced196f5165a0a46;d75f172da3822d948c354abfbf577f35 SAMEA4023662 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439393/ERR1439393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439393/ERR1439393_2.fastq.gz 2666410 WGS PHESPV0604 RANDOM 144845967;149564382 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 87590227c3bafa21c89eb1c56f5d48d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439393/ERR1439393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439393/ERR1439393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439393/PHESPV0604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439393/PHESPV0604.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439393/ERR1439393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439393/ERR1439393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439393/PHESPV0604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439393/PHESPV0604.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 153035959;157740238 ERS1194772 ERX1509771 GENOMIC 522361778 2016-06-10 PHESPV0604 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439393/PHESPV0604.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439393/PHESPV0604.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439393 PHESPV0604 ERR1439419 PHESPV0630 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439419 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439419 7398903a5f2ab7344997360745173143;40453ae2bc9d5d7421069e20d4df7a10 1313 123205894 81d18426fa5320e33ced994eab4a507e;788387229a1a255f86dde06945afb1a4 SAMEA4023688 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439419/ERR1439419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439419/ERR1439419_2.fastq.gz 1540903 WGS PHESPV0630 RANDOM 83358540;86239624 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 00574eb89a38b6d86d5e3827d7c65e13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439419/ERR1439419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439419/ERR1439419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439419/PHESPV0630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439419/PHESPV0630.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439419/ERR1439419_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439419/ERR1439419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439419/PHESPV0630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439419/PHESPV0630.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88484339;91342080 ERS1194798 ERX1509797 GENOMIC 302349190 2016-06-10 PHESPV0630 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439419/PHESPV0630.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439419/PHESPV0630.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439419 PHESPV0630 ERR1439434 PHESPV0645 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439434 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439434 8fefd9b73de1f8fd6fcd93d5ec6ee8f4;c9b402cc20b7a511b1ff86b857df8fb1 1313 174215149 b11ba8150851125be07852a01c4bebaa;73c7df58037a7b2a8b106d6509456513 SAMEA4023703 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439434/ERR1439434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439434/ERR1439434_2.fastq.gz 2185983 WGS PHESPV0645 RANDOM 118011393;122061679 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 997521aa7d2721848508b1b7ad977e59 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439434/ERR1439434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439434/ERR1439434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439434/PHESPV0645.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439434/PHESPV0645.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439434/ERR1439434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439434/ERR1439434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439434/PHESPV0645.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439434/PHESPV0645.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124934981;128970922 ERS1194813 ERX1509812 GENOMIC 429174380 2016-06-10 PHESPV0645 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439434/PHESPV0645.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439434/PHESPV0645.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439434 PHESPV0645 ERR1439449 PHESPV0660 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439449 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439449 801a6a6103846674bcb811d71ca605a2;7a0a24c06588e6f7398415a71dc14810 1313 184699699 42a79abe2daab49d9740d6087a728bb9;5742dbf22ccfc54f8b403e82e6ab72dc SAMEA4023718 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439449/ERR1439449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439449/ERR1439449_2.fastq.gz 2314138 WGS PHESPV0660 RANDOM 125241055;129186162 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eff1618fea23957d28ef4b6c907d8c1b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439449/ERR1439449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439449/ERR1439449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439449/PHESPV0660.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439449/PHESPV0660.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439449/ERR1439449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439449/ERR1439449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439449/PHESPV0660.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439449/PHESPV0660.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132452176;136369357 ERS1194828 ERX1509827 GENOMIC 454174718 2016-06-10 PHESPV0660 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439449/PHESPV0660.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439449/PHESPV0660.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439449 PHESPV0660 ERR1439516 PHESPV0727 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439516 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439516 b98fec77f28c263012cafbce2e553c73;63f82071bc831c4ca8b64433df035188 1313 109422662 e093f8e260baa8a6db3d5f973f8428c4;c99af5512795608868e33a28ab9ecaba SAMEA4023785 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439516/ERR1439516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439516/ERR1439516_2.fastq.gz 1316111 WGS PHESPV0727 RANDOM 74600961;74948595 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 753e919535357ab74df7675b01739bfa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439516/ERR1439516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439516/ERR1439516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439516/PHESPV0727.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439516/PHESPV0727.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439516/ERR1439516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439516/ERR1439516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439516/PHESPV0727.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439516/PHESPV0727.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79091621;79442170 ERS1194895 ERX1509894 GENOMIC 256891226 2016-06-10 PHESPV0727 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439516/PHESPV0727.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439516/PHESPV0727.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439516 PHESPV0727 ERR1439519 PHESPV0730 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439519 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439519 1baeeab098fe2b374e92f863957eb298;aee9beb1c3b7db5cfc0298e1ad1612d6 1313 163967366 fe6e86c7a7d743408b4fcffc7a8cf785;7bbf0ed757c84eef7c060f5aa06f7265 SAMEA4023788 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439519/ERR1439519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439519/ERR1439519_2.fastq.gz 1963116 WGS PHESPV0730 RANDOM 111310763;112671663 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2df25c4d2048074b3dc0efd62e3fac96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439519/ERR1439519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439519/ERR1439519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439519/PHESPV0730.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439519/PHESPV0730.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439519/ERR1439519_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439519/ERR1439519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439519/PHESPV0730.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439519/PHESPV0730.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117708542;119070572 ERS1194898 ERX1509897 GENOMIC 382744029 2016-06-10 PHESPV0730 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439519/PHESPV0730.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439519/PHESPV0730.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439519 PHESPV0730 ERR1439510 PHESPV0721 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439510 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439510 f8a2628714258d490ca386a3a2eb3403;bd1bebc95f436100b6b79b3c0dc5c77e 1313 146939098 4cd57e2f447d7f8ee286532e4a0f679f;75f28332f56afa8d4581c87338a3675f SAMEA4023779 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439510/ERR1439510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439510/ERR1439510_2.fastq.gz 1777359 WGS PHESPV0721 RANDOM 99107608;102426343 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1c846e850ea3aff2f4c5c0c51d5259b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439510/ERR1439510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439510/ERR1439510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439510/PHESPV0721.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439510/PHESPV0721.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439510/ERR1439510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439510/ERR1439510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439510/PHESPV0721.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439510/PHESPV0721.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104943854;108341371 ERS1194889 ERX1509888 GENOMIC 347803470 2016-06-10 PHESPV0721 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439510/PHESPV0721.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439510/PHESPV0721.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439510 PHESPV0721 ERR1439524 PHESPV0735 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439524 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439524 3a58844a770a4f5364d3e2f19b7f8fad;3b0a4a2b16172fca3335189eab058c74 1313 143361827 7c3cdd88bc37bfbd2fd8d3431a35fc90;151751f6ac092e2441bf61d2671b563b SAMEA4023793 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439524/ERR1439524_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439524/ERR1439524_2.fastq.gz 1725111 WGS PHESPV0735 RANDOM 97084269;98068584 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6df54ef8b5aad791b172ba0680efbcc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439524/ERR1439524_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439524/ERR1439524_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439524/PHESPV0735.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439524/PHESPV0735.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439524/ERR1439524_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439524/ERR1439524_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439524/PHESPV0735.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439524/PHESPV0735.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102757987;103741378 ERS1194903 ERX1509902 GENOMIC 336625025 2016-06-10 PHESPV0735 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439524/PHESPV0735.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439524/PHESPV0735.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439524 PHESPV0735 ERR1439796 PHESPV1007 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439796 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439796 5f7df45519c29a8ebce868d14d6d9141;2866db4a93f0af1e718c9c2a867d6a8f 1313 160439490 5e0f286ce832554dc5e8ef27df986d0f;ff8d1a67b4076f4d3702c75f6fd3eb58 SAMEA4024065 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439796/ERR1439796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439796/ERR1439796_2.fastq.gz 1740544 WGS PHESPV1007 RANDOM 105355248;107691979 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 920c94a0770b25931cc84c0c507ea543 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439796/ERR1439796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439796/ERR1439796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439796/PHESPV1007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439796/PHESPV1007.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439796/ERR1439796_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439796/ERR1439796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439796/PHESPV1007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439796/PHESPV1007.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111000720;113195052 ERS1195175 ERX1510174 GENOMIC 343713938 2016-06-10 PHESPV1007 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439796/PHESPV1007.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439796/PHESPV1007.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439796 PHESPV1007 ERR1440010 PHESPV1221 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440010 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440010 868d407e61f0455f8c674a578a3b17aa;8f6fab3aad68056c981a896673de3b3c 1313 129289910 ba4d608f11bac4de782d0ba0ce410246;56d05459946b2b627fed1d8481946837 SAMEA4024279 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440010/ERR1440010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440010/ERR1440010_2.fastq.gz 1464524 WGS PHESPV1221 RANDOM 84237668;90339677 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ea047345fda4d4db32cf52d387b1bf9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440010/ERR1440010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440010/ERR1440010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440010/PHESPV1221.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440010/PHESPV1221.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440010/ERR1440010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440010/ERR1440010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440010/PHESPV1221.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440010/PHESPV1221.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89101062;95107228 ERS1195389 ERX1510388 GENOMIC 290333908 2016-06-10 PHESPV1221 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440010/PHESPV1221.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440010/PHESPV1221.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440010 PHESPV1221 ERR1440012 PHESPV1223 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440012 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440012 549d8a82015ce3861a61eb54e11888c1;091e9eb7c47065dd2906ffbe581bae51 1313 122890456 21c0408f54a64c9bb73f41b8a3b8de46;3bc67601dde11c3e5313b782ff989891 SAMEA4024281 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440012/ERR1440012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440012/ERR1440012_2.fastq.gz 1411027 WGS PHESPV1223 RANDOM 81612054;85061455 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6f64d1a3beda99f31348b02b72774d9f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440012/ERR1440012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440012/ERR1440012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440012/PHESPV1223.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440012/PHESPV1223.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440012/ERR1440012_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440012/ERR1440012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440012/PHESPV1223.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440012/PHESPV1223.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86315841;89710591 ERS1195391 ERX1510390 GENOMIC 280127256 2016-06-10 PHESPV1223 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440012/PHESPV1223.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440012/PHESPV1223.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440012 PHESPV1223 ERR1440046 PHESPV1257 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440046 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440046 74acf179f8e75cbe74a938db567e63a5;83201e3f1fd1c4c42d1d5e6053de49e5 1313 199763919 214eba44b9ffe709ce523abda9dfe285;19af2d0ab4c5a04c28eb415cb9bdd509 SAMEA4024315 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440046/ERR1440046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440046/ERR1440046_2.fastq.gz 2210067 WGS PHESPV1257 RANDOM 134225527;136265325 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 77aaa9b92207b9c4fcc8add5ce801fad ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440046/ERR1440046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440046/ERR1440046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440046/PHESPV1257.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440046/PHESPV1257.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440046/ERR1440046_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440046/ERR1440046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440046/PHESPV1257.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440046/PHESPV1257.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141199216;143197929 ERS1195425 ERX1510424 GENOMIC 438010979 2016-06-10 PHESPV1257 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440046/PHESPV1257.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440046/PHESPV1257.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440046 PHESPV1257 ERR1440051 PHESPV1262 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440051 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440051 c3e2e77c4fdcb2a22f9edfef86f1f156;ba388a5eee9e5045363fc04b6964d37c 1313 141864686 d29c7e1de8c821e2a0193f0ff039f1f7;e5f9035fb747a9f6391bee6b8055e61c SAMEA4024320 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440051/ERR1440051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440051/ERR1440051_2.fastq.gz 1555532 WGS PHESPV1262 RANDOM 94776928;96771811 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a37f1489a94cddefd531e5796850aa2c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440051/ERR1440051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440051/ERR1440051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440051/PHESPV1262.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440051/PHESPV1262.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440051/ERR1440051_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440051/ERR1440051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440051/PHESPV1262.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440051/PHESPV1262.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99956483;101908847 ERS1195430 ERX1510429 GENOMIC 308015549 2016-06-10 PHESPV1262 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440051/PHESPV1262.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440051/PHESPV1262.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440051 PHESPV1262 ERR1440058 PHESPV1269 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440058 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440058 c79f73106a998d33a43a92d75371a41e;bb7cbe9e18effb6bff84b27ce905a092 1313 194835275 acd238fedeb649ff0c70f6cf63a5a4cf;bb62aced3178e364be318428a9299ec3 SAMEA4024327 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440058/ERR1440058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440058/ERR1440058_2.fastq.gz 2166660 WGS PHESPV1269 RANDOM 130996178;132984710 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 06d7cdca7bd121b1f3772071b036d5b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440058/ERR1440058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440058/ERR1440058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440058/PHESPV1269.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440058/PHESPV1269.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440058/ERR1440058_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440058/ERR1440058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440058/PHESPV1269.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440058/PHESPV1269.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137821037;139781250 ERS1195437 ERX1510436 GENOMIC 429569363 2016-06-10 PHESPV1269 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440058/PHESPV1269.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440058/PHESPV1269.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440058 PHESPV1269 ERR1440151 PHESPV1364 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440151 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440151 cdd064068257e53d642019366d6ce1d3;6b2e3cdcc83a2d209c896a8bac4c537e 1313 107098485 3f3a45ba5000a07ab0e38628618c816e;4261929e72b2e8f381ece575d288f07e SAMEA4024420 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440151/ERR1440151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440151/ERR1440151_2.fastq.gz 1213987 WGS PHESPV1364 RANDOM 71365567;73889392 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4d716256835f18f6fe273c5ca4065f90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440151/ERR1440151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440151/ERR1440151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440151/PHESPV1364.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440151/PHESPV1364.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440151/ERR1440151_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440151/ERR1440151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440151/PHESPV1364.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440151/PHESPV1364.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75528663;77955940 ERS1195530 ERX1510529 GENOMIC 240993411 2016-06-10 PHESPV1364 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440151/PHESPV1364.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440151/PHESPV1364.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440151 PHESPV1364 ERR1440347 PHESPV1562 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440347 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440347 df8cecd93d806f233a7ffa967a68b029;23b789d834b2378769b2a5fe50a6d0e3 1313 133390935 bfee4f3c2f64605bae22a8c43dda56f4;3b8393c19e850966de9cbc088bbad88b SAMEA4024616 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440347/ERR1440347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440347/ERR1440347_2.fastq.gz 1559865 WGS PHESPV1562 RANDOM 96889158;99735907 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f841bffba72eb597d3f0613feb8cb55d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440347/ERR1440347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440347/ERR1440347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440347/PHESPV1562.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440347/PHESPV1562.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440347/ERR1440347_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440347/ERR1440347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440347/PHESPV1562.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440347/PHESPV1562.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92954285;95757864 ERS1195726 ERX1510725 GENOMIC 307417377 2016-06-10 PHESPV1562 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440347/PHESPV1562.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440347/PHESPV1562.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440347 PHESPV1562 ERR1440152 PHESPV1365 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440152 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440152 13de3a44761db22e60734a2df606ec73;8812e92c99b408d43477876a95f53c39 1313 93237157 45739f83b933d5b8251581666819e12f;389382d3437c2f93c32a62736ed0d1aa SAMEA4024421 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440152/ERR1440152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440152/ERR1440152_2.fastq.gz 1052770 WGS PHESPV1365 RANDOM 62149431;64333879 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 829abf2ca778dbbcaa8aea9152f71dc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440152/ERR1440152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440152/ERR1440152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440152/PHESPV1365.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440152/PHESPV1365.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440152/ERR1440152_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440152/ERR1440152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440152/PHESPV1365.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440152/PHESPV1365.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65815350;67907623 ERS1195531 ERX1510530 GENOMIC 208997459 2016-06-10 PHESPV1365 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440152/PHESPV1365.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440152/PHESPV1365.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440152 PHESPV1365 ERR1440351 PHESPV1566 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440351 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440351 f43caf0786e1f905274bce1d0d29029d;d73d610ca82d03f94494291a0d64c2b3 1313 189597764 276e2a70b450857be53d52d4cc48463d;520ed3048987b963fd4284331c722f59 SAMEA4024620 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440351/ERR1440351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440351/ERR1440351_2.fastq.gz 2222027 WGS PHESPV1566 RANDOM 137696631;141284357 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c45aa25e91d6ed0902583d4c77e5f487 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440351/ERR1440351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440351/ERR1440351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440351/PHESPV1566.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440351/PHESPV1566.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440351/ERR1440351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440351/ERR1440351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440351/PHESPV1566.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440351/PHESPV1566.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132127179;135684178 ERS1195730 ERX1510729 GENOMIC 438511237 2016-06-10 PHESPV1566 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440351/PHESPV1566.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440351/PHESPV1566.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440351 PHESPV1566 ERR1440361 PHESPV1576 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440361 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440361 96f8b76605b01d42e9085c032ba91d9c;942e6e085860c48b5093720904b26a00 1313 151498017 07586748401e25b68a1bb3ff39eb6d66;200a45dccee550c0e2c800cb8f55dcd8 SAMEA4024630 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440361/ERR1440361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440361/ERR1440361_2.fastq.gz 1765564 WGS PHESPV1576 RANDOM 110018893;113420909 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 43ec9c39aafbee794aedcf1ee9831ee0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440361/ERR1440361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440361/ERR1440361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440361/PHESPV1576.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440361/PHESPV1576.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440361/ERR1440361_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440361/ERR1440361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440361/PHESPV1576.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440361/PHESPV1576.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105504716;108870501 ERS1195740 ERX1510739 GENOMIC 349181456 2016-06-10 PHESPV1576 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440361/PHESPV1576.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440361/PHESPV1576.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440361 PHESPV1576 ERR1440389 PHESPV1604 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440389 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440389 4482136d3c9b60489c3a7fc65a0b9bc4;21ecda0137e92b7d0e222ddeee5d2f06 1313 153369488 92692f1deab078797f18527e9b47d779;37a06bbeb59d7387a9c35c0bc2e955fa SAMEA4024658 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440389/ERR1440389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440389/ERR1440389_2.fastq.gz 1690964 WGS PHESPV1604 RANDOM 110894971;112270384 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab58b965d7164183aedcfc2f357a232f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440389/ERR1440389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440389/ERR1440389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440389/PHESPV1604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440389/PHESPV1604.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440389/ERR1440389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440389/ERR1440389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440389/PHESPV1604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440389/PHESPV1604.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106527940;107907105 ERS1195768 ERX1510767 GENOMIC 331361404 2016-06-10 PHESPV1604 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440389/PHESPV1604.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440389/PHESPV1604.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440389 PHESPV1604 ERR1440539 PHESPV1754 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440539 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440539 579cc9daa2c710089e67050459418515;a1d79d40dab07971ccaa7d7df4410ae0 1313 149518220 b34391611ed52c17107272f394e1624e;db89c7effb0018ed70b613f5e55f14c6 SAMEA4024808 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440539/ERR1440539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440539/ERR1440539_2.fastq.gz 1681308 WGS PHESPV1754 RANDOM 106941164;111527647 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1450bdb5bb3366a849cd4e462f262ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440539/ERR1440539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440539/ERR1440539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440539/PHESPV1754.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440539/PHESPV1754.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440539/ERR1440539_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440539/ERR1440539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440539/PHESPV1754.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440539/PHESPV1754.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102655950;107169802 ERS1195918 ERX1510917 GENOMIC 330831731 2016-06-10 PHESPV1754 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440539/PHESPV1754.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440539/PHESPV1754.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440539 PHESPV1754 ERR1440447 PHESPV1662 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440447 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440447 2a5f9af9e36f7b8e8d46cbcb667e7c87;1e04acc7289b27f127fa7cead14bb8f7 1313 144264109 f2b05d4ea5a2b74f70d9feb37001ed2e;35e2aa70b4b2208e59d9913cd431291f SAMEA4024716 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440447/ERR1440447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440447/ERR1440447_2.fastq.gz 1537043 WGS PHESPV1662 RANDOM 101932404;106412142 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c7f7e236a92764b3f48a1088a7027ba2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440447/ERR1440447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440447/ERR1440447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440447/PHESPV1662.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440447/PHESPV1662.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440447/ERR1440447_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440447/ERR1440447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440447/PHESPV1662.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440447/PHESPV1662.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98025865;102469621 ERS1195826 ERX1510825 GENOMIC 301093074 2016-06-10 PHESPV1662 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440447/PHESPV1662.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440447/PHESPV1662.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440447 PHESPV1662 ERR1440566 PHESPV1781 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440566 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440566 426583a0506e9f13ba40ddce87f13c79;55ccc4fb6840f78dc6c60919d7579091 1313 123493699 e3dd2e2360dd938290b08fd00d06347f;a1884c1f3f425a3757c996b8d4016616 SAMEA4024835 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440566/ERR1440566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440566/ERR1440566_2.fastq.gz 1450667 WGS PHESPV1781 RANDOM 90914101;91625345 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7bf09f58a141241a8aa412f325372e13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440566/ERR1440566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440566/ERR1440566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440566/PHESPV1781.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440566/PHESPV1781.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440566/ERR1440566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440566/ERR1440566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440566/PHESPV1781.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440566/PHESPV1781.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87318776;87978583 ERS1195945 ERX1510944 GENOMIC 286831763 2016-06-10 PHESPV1781 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440566/PHESPV1781.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440566/PHESPV1781.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440566 PHESPV1781 ERR1439075 PHESPV0286 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439075 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439075 eb1d40bf53ed6abd5e2b596eda2ec236;d74859421eb1505061f2ca6e3d967fbe 1313 129604613 7bc07804a3430c7f95d31e27a7be2d5a;4b62e1161b6fb19ec6880aaabbe08348 SAMEA4023344 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439075/ERR1439075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439075/ERR1439075_2.fastq.gz 1490046 WGS PHESPV0286 RANDOM 87156621;89225561 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 86b43df194fe7afa7a6e1c373fbb684b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439075/ERR1439075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439075/ERR1439075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439075/PHESPV0286.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439075/PHESPV0286.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439075/ERR1439075_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439075/ERR1439075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439075/PHESPV0286.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439075/PHESPV0286.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92115288;94177335 ERS1194454 ERX1509453 GENOMIC 295687851 2016-06-10 PHESPV0286 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439075/PHESPV0286.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439075/PHESPV0286.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439075 PHESPV0286 ERR1439744 PHESPV0955 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439744 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439744 5db637df90012b839a9db6897ad0f923;031cf15766b17e0e36ec94d07359b6d2 1313 182239161 88a1fe15f203b593afb3d6ecda8b1591;e214802396ffb8540751531e20157282 SAMEA4024013 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439744/ERR1439744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439744/ERR1439744_2.fastq.gz 2020710 WGS PHESPV0955 RANDOM 120239162;124256386 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a29860c7959069d06ea2398b90bba8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439744/ERR1439744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439744/ERR1439744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439744/PHESPV0955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439744/PHESPV0955.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439744/ERR1439744_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439744/ERR1439744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439744/PHESPV0955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439744/PHESPV0955.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126648497;130607188 ERS1195123 ERX1510122 GENOMIC 399736084 2016-06-10 PHESPV0955 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439744/PHESPV0955.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439744/PHESPV0955.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439744 PHESPV0955 ERR1438837 PHESPV0047 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438837 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438837 d998e011605badef95a5fa25e5e02421;41e50f27ee08680042d61239d8eec71b 1313 72157972 2c533ccc221f5693a9b09d4204cc6e43;38a122b62e20fa9e1bfe3d74ba919775 SAMEA4023106 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438837/ERR1438837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438837/ERR1438837_2.fastq.gz 826392 WGS PHESPV0047 RANDOM 47027264;50977956 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c517799922720807b3f0147d1dd0c3d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438837/ERR1438837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438837/ERR1438837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438837/PHESPV0047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438837/PHESPV0047.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438837/ERR1438837_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438837/ERR1438837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438837/PHESPV0047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438837/PHESPV0047.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49960562;53853986 ERS1194216 ERX1509215 GENOMIC 163993907 2016-06-10 PHESPV0047 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438837/PHESPV0047.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438837/PHESPV0047.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438837 PHESPV0047 ERR1438875 PHESPV0085 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438875 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438875 f797846a27289be40256ab3a0a5ac731;bcb7b68557adb01d9342b74b6dd3bd71 1313 93953713 7036cba3728a27b6b0009c27bda7d2cd;a29682fd81550a52ed9e65d5098dcbd1 SAMEA4023144 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438875/ERR1438875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438875/ERR1438875_2.fastq.gz 1104604 WGS PHESPV0085 RANDOM 62776185;65684401 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0b69a4778358b1bfdee97be6157b1999 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438875/ERR1438875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438875/ERR1438875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438875/PHESPV0085.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438875/PHESPV0085.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438875/ERR1438875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438875/ERR1438875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438875/PHESPV0085.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438875/PHESPV0085.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66564819;69452364 ERS1194254 ERX1509253 GENOMIC 219623042 2016-06-10 PHESPV0085 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438875/PHESPV0085.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438875/PHESPV0085.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438875 PHESPV0085 ERR1438856 PHESPV0066 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438856 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438856 1a0fa9007bc77703ab9243df85985e26;2730e5841e5590690764bdcc7ac0ffcc 1313 94039253 d8a256366f7ee191285cf0dcadfa2097;cc7a88ef00f794f362b4868f350f6e3d SAMEA4023125 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438856/ERR1438856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438856/ERR1438856_2.fastq.gz 1094732 WGS PHESPV0066 RANDOM 62049016;65970492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b75c212977ca8a08a1cfdbf8286f7226 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438856/ERR1438856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438856/ERR1438856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438856/PHESPV0066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438856/PHESPV0066.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438856/ERR1438856_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438856/ERR1438856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438856/PHESPV0066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438856/PHESPV0066.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65792099;69673210 ERS1194235 ERX1509234 GENOMIC 217458605 2016-06-10 PHESPV0066 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438856/PHESPV0066.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438856/PHESPV0066.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438856 PHESPV0066 ERR1438881 PHESPV0091 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438881 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438881 98cd97b74561167a8dd48047e2d9aeb7;bc65f1f7666abcf4b69428f8b616bff2 1313 97958067 ee57b155b5d1f39f81259595c11ceb01;2f294eb173b36ed926f007891a01962e SAMEA4023150 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438881/ERR1438881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438881/ERR1438881_2.fastq.gz 1141840 WGS PHESPV0091 RANDOM 65181523;68562660 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b4d079641ce6a32a559bebb171f9e3d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438881/ERR1438881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438881/ERR1438881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438881/PHESPV0091.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438881/PHESPV0091.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438881/ERR1438881_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438881/ERR1438881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438881/PHESPV0091.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438881/PHESPV0091.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69101252;72449393 ERS1194260 ERX1509259 GENOMIC 226955351 2016-06-10 PHESPV0091 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438881/PHESPV0091.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438881/PHESPV0091.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438881 PHESPV0091 ERR1438983 PHESPV0194 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438983 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438983 3945d0081a39bcdd09c00cf64519ba2b;1d594a75d093e47b66d7e454ac3a8382 1313 188283379 c8b5395da47068a24aa7f226d39289dd;7f16c10893786d1e29578f4ab69271c7 SAMEA4023252 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438983/ERR1438983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438983/ERR1438983_2.fastq.gz 2140426 WGS PHESPV0194 RANDOM 126361719;127664161 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9c0f01a9771eebedfb3a210105af197 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438983/ERR1438983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438983/ERR1438983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438983/PHESPV0194.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438983/PHESPV0194.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438983/ERR1438983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438983/ERR1438983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438983/PHESPV0194.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438983/PHESPV0194.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133149351;134426937 ERS1194362 ERX1509361 GENOMIC 424588304 2016-06-10 PHESPV0194 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438983/PHESPV0194.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438983/PHESPV0194.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438983 PHESPV0194 ERR1438906 PHESPV0116 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438906 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438906 1476965af48187eee09d01b37d5ddf47;b12f136b6beb2a51a49646aae6f046a5 1313 165080371 815014a10fe79b1156ef2115a31015b6;da1d984dc8b13a4c01560ad13c9ee435 SAMEA4023175 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438906/ERR1438906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438906/ERR1438906_2.fastq.gz 1840564 WGS PHESPV0116 RANDOM 110486837;112886352 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e46647ad78f6a4b139044f6de35788f5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438906/ERR1438906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438906/ERR1438906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438906/PHESPV0116.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438906/PHESPV0116.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438906/ERR1438906_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438906/ERR1438906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438906/PHESPV0116.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438906/PHESPV0116.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116466115;118876015 ERS1194285 ERX1509284 GENOMIC 365264822 2016-06-10 PHESPV0116 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438906/PHESPV0116.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438906/PHESPV0116.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438906 PHESPV0116 ERR1438899 PHESPV0109 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438899 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438899 65995647ce5eec27e793bcb17daa412a;d2e8c090dc8651d75251c9c0c86b3104 1313 125946418 1911d6ec6a0af3473f03a52cad5b3755;30c15f0a3b1f621e483a200b32093012 SAMEA4023168 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438899/ERR1438899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438899/ERR1438899_2.fastq.gz 1512984 WGS PHESPV0109 RANDOM 84686713;87903109 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b54d8c6b83548be78937cb8c127eb4e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438899/ERR1438899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438899/ERR1438899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438899/PHESPV0109.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438899/PHESPV0109.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438899/ERR1438899_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438899/ERR1438899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438899/PHESPV0109.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438899/PHESPV0109.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89711463;92919660 ERS1194278 ERX1509277 GENOMIC 300966889 2016-06-10 PHESPV0109 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438899/PHESPV0109.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438899/PHESPV0109.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438899 PHESPV0109 ERR1438878 PHESPV0088 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438878 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438878 f48f99ab12b5da2c987c95590f4b8088;289928c43ba7fb46e8d9d9de2bf16ccc 1313 95374101 903b76431ea2f9c9ac05ddd5b92d6901;e06a132a644c029b3789f687e09eeb0a SAMEA4023147 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438878/ERR1438878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438878/ERR1438878_2.fastq.gz 1115290 WGS PHESPV0088 RANDOM 63773569;66577376 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b7a8d73a03332e1b1dbef78fec7c668 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438878/ERR1438878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438878/ERR1438878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438878/PHESPV0088.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438878/PHESPV0088.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438878/ERR1438878_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438878/ERR1438878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438878/PHESPV0088.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438878/PHESPV0088.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67612844;70398162 ERS1194257 ERX1509256 GENOMIC 221789759 2016-06-10 PHESPV0088 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438878/PHESPV0088.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438878/PHESPV0088.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438878 PHESPV0088 ERR1438993 PHESPV0204 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438993 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438993 03f4ace8cd781355cb5af01652ea31dd;678c31d4a5ab1f499b1f8f7648182a23 1313 123490965 1231f91cbce83f3f1b46c68ce5b80777;43f556552514f30a0658d22f15cc5ded SAMEA4023262 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438993/ERR1438993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438993/ERR1438993_2.fastq.gz 1411362 WGS PHESPV0204 RANDOM 82340534;85164893 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 26a376e1c9ed83340f8c762c09a0f173 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438993/ERR1438993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438993/ERR1438993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438993/PHESPV0204.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438993/PHESPV0204.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438993/ERR1438993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438993/ERR1438993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438993/PHESPV0204.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438993/PHESPV0204.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87015746;89816665 ERS1194372 ERX1509371 GENOMIC 279781858 2016-06-10 PHESPV0204 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438993/PHESPV0204.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438993/PHESPV0204.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438993 PHESPV0204 ERR1439473 PHESPV0684 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439473 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439473 5b26e6ea1774c5f00406e1645ad7387f;669d73fbaf475e17cb2a9300a834283f 1313 94489017 f1a27afdd93cddaddc0f75ff3241e044;c489e36d1d5248c47816be7a92d72302 SAMEA4023742 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439473/ERR1439473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439473/ERR1439473_2.fastq.gz 1137685 WGS PHESPV0684 RANDOM 63605954;66134390 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3d9d568130b9088acb9ddee9d45b79e4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439473/ERR1439473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439473/ERR1439473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439473/PHESPV0684.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439473/PHESPV0684.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439473/ERR1439473_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439473/ERR1439473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439473/PHESPV0684.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439473/PHESPV0684.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67551581;70120879 ERS1194852 ERX1509851 GENOMIC 222522006 2016-06-10 PHESPV0684 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439473/PHESPV0684.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439473/PHESPV0684.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439473 PHESPV0684 ERR1439477 PHESPV0688 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439477 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439477 d9f24fc67373ec0da04a66d94ca25c37;287261f691a7853437f0a5dbd513e49e 1313 104379795 27f47f3c8adbfe6fc656c244c04a0fc8;334b1bccc9e8d36aa6ba1801771e0e69 SAMEA4023746 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439477/ERR1439477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439477/ERR1439477_2.fastq.gz 1251652 WGS PHESPV0688 RANDOM 69871498;73137963 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 148e7dffbc4fece198f110d1861dc002 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439477/ERR1439477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439477/ERR1439477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439477/PHESPV0688.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439477/PHESPV0688.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439477/ERR1439477_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439477/ERR1439477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439477/PHESPV0688.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439477/PHESPV0688.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74144278;77455105 ERS1194856 ERX1509855 GENOMIC 244567901 2016-06-10 PHESPV0688 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439477/PHESPV0688.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439477/PHESPV0688.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439477 PHESPV0688 ERR1439482 PHESPV0693 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439482 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439482 26c3707efd63a4b5fd472041284eadc3;3a502fce83c7144f413c53073a5a2df8 1313 98943590 14546401d457ae9d677c38cffe0c2f73;85adfdf6ccc7f1876488c497aebde05c SAMEA4023751 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439482/ERR1439482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439482/ERR1439482_2.fastq.gz 1196301 WGS PHESPV0693 RANDOM 66661771;69309808 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 11e8453cf5548ff897def0ad7c03ee77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439482/ERR1439482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439482/ERR1439482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439482/PHESPV0693.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439482/PHESPV0693.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439482/ERR1439482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439482/ERR1439482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439482/PHESPV0693.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439482/PHESPV0693.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70795002;73484503 ERS1194861 ERX1509860 GENOMIC 234176048 2016-06-10 PHESPV0693 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439482/PHESPV0693.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439482/PHESPV0693.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439482 PHESPV0693 ERR1439478 PHESPV0689 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439478 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439478 d83f51702dad854f91e83791a242c530;4b8350805e086c6a7875c19fc1ced3e8 1313 108906493 ffc9227a51f29054804cedf27e87a9ff;72cff3fb295c31439aa4e272982c8924 SAMEA4023747 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439478/ERR1439478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439478/ERR1439478_2.fastq.gz 1306426 WGS PHESPV0689 RANDOM 72855181;76369280 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ecfcb9598719ef0ebc97b69e8bd5d8af ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439478/ERR1439478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439478/ERR1439478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439478/PHESPV0689.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439478/PHESPV0689.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439478/ERR1439478_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439478/ERR1439478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439478/PHESPV0689.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439478/PHESPV0689.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77318991;80874017 ERS1194857 ERX1509856 GENOMIC 255220414 2016-06-10 PHESPV0689 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439478/PHESPV0689.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439478/PHESPV0689.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439478 PHESPV0689 ERR1439500 PHESPV0711 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439500 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439500 57aa28df12ffa104119fe02674300386;c9ebc677617788334ff1e826576d1ac4 1313 119088889 d5c5e38d8eef770f9459998269ce97af;fa493f234c2510c9ff943148ee901c0f SAMEA4023769 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439500/ERR1439500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439500/ERR1439500_2.fastq.gz 1424575 WGS PHESPV0711 RANDOM 79639124;83105497 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c2ca335028a136fb3f8cf009da266c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439500/ERR1439500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439500/ERR1439500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439500/PHESPV0711.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439500/PHESPV0711.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439500/ERR1439500_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439500/ERR1439500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439500/PHESPV0711.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439500/PHESPV0711.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84426014;87952757 ERS1194879 ERX1509878 GENOMIC 278299330 2016-06-10 PHESPV0711 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439500/PHESPV0711.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439500/PHESPV0711.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439500 PHESPV0711 ERR1439492 PHESPV0703 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439492 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439492 3825f95de4d894262e1ecb65ee4a9fa6;7cab5f8609acbfeee5d876332bfa0c64 1313 100495916 f174852be55eeb1d2b98afec3ac2d481;d78f81bb58e8718d7e5ccda73e54504b SAMEA4023761 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439492/ERR1439492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439492/ERR1439492_2.fastq.gz 1214298 WGS PHESPV0703 RANDOM 67462102;70387737 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9d58a35b0241045be0f0554fcce3b786 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439492/ERR1439492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439492/ERR1439492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439492/PHESPV0703.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439492/PHESPV0703.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439492/ERR1439492_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439492/ERR1439492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439492/PHESPV0703.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439492/PHESPV0703.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71630775;74600653 ERS1194871 ERX1509870 GENOMIC 237727094 2016-06-10 PHESPV0703 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439492/PHESPV0703.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439492/PHESPV0703.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439492 PHESPV0703 ERR1439531 PHESPV0742 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439531 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439531 6b03f0a99449dd6c11b27d2b23918944;3cd1a50520adb594318a987d4599dff7 1313 181978289 4a601eb45d1616f6a30acfb6a1a5b2b8;2a5d54afcebedd400f7bd30ab7c9cd13 SAMEA4023800 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439531/ERR1439531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439531/ERR1439531_2.fastq.gz 2199871 WGS PHESPV0742 RANDOM 123983903;124647049 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b07d2b2f4245c16bd7de7d6885cded91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439531/ERR1439531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439531/ERR1439531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439531/PHESPV0742.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439531/PHESPV0742.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439531/ERR1439531_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439531/ERR1439531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439531/PHESPV0742.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439531/PHESPV0742.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130955218;131627508 ERS1194910 ERX1509909 GENOMIC 430054694 2016-06-10 PHESPV0742 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439531/PHESPV0742.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439531/PHESPV0742.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439531 PHESPV0742 ERR1439528 PHESPV0739 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439528 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439528 8acbf5cf6f572208c6ebc2b0128cb390;4b4fbe356c519894ffd90a41ea2d2ff9 1313 108241185 16e9cb781d8a05e4df7d47d24b6a19cb;78c57dc690933f673fafa23938a8ec5e SAMEA4023797 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439528/ERR1439528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439528/ERR1439528_2.fastq.gz 1304057 WGS PHESPV0739 RANDOM 73649930;73967863 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 41aa042afc9749f9dbd5ae9dcf13f899 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439528/ERR1439528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439528/ERR1439528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439528/PHESPV0739.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439528/PHESPV0739.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439528/ERR1439528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439528/ERR1439528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439528/PHESPV0739.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439528/PHESPV0739.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78081427;78400045 ERS1194907 ERX1509906 GENOMIC 254642430 2016-06-10 PHESPV0739 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439528/PHESPV0739.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439528/PHESPV0739.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439528 PHESPV0739 ERR1439493 PHESPV0704 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439493 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439493 660958bd474f6e29055432acf91d65e0;f024508aac3e3e23d1e7d9364687bc8a 1313 158740622 15521575a96459a6dc0af7f9f6df3713;2e1626aea1845a051c4b89aeddbae6c6 SAMEA4023762 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439493/ERR1439493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439493/ERR1439493_2.fastq.gz 1928989 WGS PHESPV0704 RANDOM 107004759;111055321 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bc5ac0dc22e3fa326bb1f1ef935590f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439493/ERR1439493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439493/ERR1439493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439493/PHESPV0704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439493/PHESPV0704.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439493/ERR1439493_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439493/ERR1439493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439493/PHESPV0704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439493/PHESPV0704.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113221957;117370830 ERS1194872 ERX1509871 GENOMIC 377786402 2016-06-10 PHESPV0704 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439493/PHESPV0704.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439493/PHESPV0704.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439493 PHESPV0704 ERR1439498 PHESPV0709 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439498 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439498 b282b0562efe6ef6b1b20096b5a5baaf;5b6f7baa194f831a39394f8c738cd6f3 1313 129134243 f9bbf3812701bd92762845b936b33bc9;6743b2f71ee38fb749ab1d246a874291 SAMEA4023767 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439498/ERR1439498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439498/ERR1439498_2.fastq.gz 1565577 WGS PHESPV0709 RANDOM 86879398;90519847 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 26336dfccc07a71c99af806bd7bdb5a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439498/ERR1439498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439498/ERR1439498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439498/PHESPV0709.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439498/PHESPV0709.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439498/ERR1439498_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439498/ERR1439498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439498/PHESPV0709.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439498/PHESPV0709.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92085945;95789364 ERS1194877 ERX1509876 GENOMIC 306462168 2016-06-10 PHESPV0709 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439498/PHESPV0709.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439498/PHESPV0709.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439498 PHESPV0709 ERR1439522 PHESPV0733 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439522 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439522 4d69d52817f4144f3bd6a6012a3b9733;8c5b0f602dc8c3615b7883957458c8f6 1313 87969351 8c24110142049c5e0e2892ca00bf1d9f;e47631001cf442c920a50b21186d69ba SAMEA4023791 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439522/ERR1439522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439522/ERR1439522_2.fastq.gz 1058120 WGS PHESPV0733 RANDOM 59967372;60537370 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 454f9d5fde8e9fef2ab31b6aa4a96340 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439522/ERR1439522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439522/ERR1439522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439522/PHESPV0733.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439522/PHESPV0733.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439522/ERR1439522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439522/ERR1439522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439522/PHESPV0733.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439522/PHESPV0733.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63687106;64250674 ERS1194901 ERX1509900 GENOMIC 206553783 2016-06-10 PHESPV0733 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439522/PHESPV0733.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439522/PHESPV0733.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439522 PHESPV0733 ERR1439546 PHESPV0757 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439546 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439546 656d7d961338c4db5d50fe17ebb42757;744f9066c4fc9c19ad6b997be9574d3d 1313 146852059 b47adbe3259c375674ce197b7a7f6559;be51a710b9a64162158ad278c5020cc9 SAMEA4023815 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439546/ERR1439546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439546/ERR1439546_2.fastq.gz 1712082 WGS PHESPV0757 RANDOM 99102630;100356177 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c212e0eb7828a742abd70d146fde5c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439546/ERR1439546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439546/ERR1439546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439546/PHESPV0757.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439546/PHESPV0757.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439546/ERR1439546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439546/ERR1439546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439546/PHESPV0757.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439546/PHESPV0757.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104700138;105971830 ERS1194925 ERX1509924 GENOMIC 340144002 2016-06-10 PHESPV0757 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439546/PHESPV0757.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439546/PHESPV0757.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439546 PHESPV0757 ERR1439647 PHESPV0858 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439647 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439647 25bd8dac7ed8d9455fb222cb12707568;ba7c88150d17ab7bfbfd44c0c19dd2df 1313 141289163 332ae6847be209d248c722be313d138f;0bfca678a454ce36c5173be182e61d66 SAMEA4023916 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439647/ERR1439647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439647/ERR1439647_2.fastq.gz 1641717 WGS PHESPV0858 RANDOM 94096040;96071140 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 399fef100b6e2f58d26e966eb21774ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439647/ERR1439647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439647/ERR1439647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439647/PHESPV0858.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439647/PHESPV0858.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439647/ERR1439647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439647/ERR1439647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439647/PHESPV0858.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439647/PHESPV0858.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99463585;101444457 ERS1195026 ERX1510025 GENOMIC 325640598 2016-06-10 PHESPV0858 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439647/PHESPV0858.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439647/PHESPV0858.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439647 PHESPV0858 ERR1439873 PHESPV1084 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439873 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439873 533b017612e5b4a20a47905cabed2907;4ac6cccecc020426546fef012c2798c4 1313 183100530 b2c02184654d16cc62ee8342521b00a6;2e5feb534ba32963b0c1e9d2e7e0a659 SAMEA4024142 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439873/ERR1439873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439873/ERR1439873_2.fastq.gz 2027943 WGS PHESPV1084 RANDOM 131693166;133125117 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5f3ae5d1b305a0b405bdc5b75bcf73ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439873/ERR1439873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439873/ERR1439873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439873/PHESPV1084.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439873/PHESPV1084.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439873/ERR1439873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439873/ERR1439873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439873/PHESPV1084.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439873/PHESPV1084.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126405350;127851371 ERS1195252 ERX1510251 GENOMIC 390129885 2016-06-10 PHESPV1084 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439873/PHESPV1084.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439873/PHESPV1084.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439873 PHESPV1084 ERR1439903 PHESPV1114 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439903 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439903 bbeb64189f0acbcba7a77abd0bf4b4fa;9d4ac51525be3fb92cc0f03d50955f68 1313 146324462 36b017a5eb5665fdc2f82b995c2da824;22791f7653f6835b990b157a3406b819 SAMEA4024172 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439903/ERR1439903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439903/ERR1439903_2.fastq.gz 1624497 WGS PHESPV1114 RANDOM 96696559;98769588 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 694622ab79bb6d74aa8ae89ef2c8b83a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439903/ERR1439903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439903/ERR1439903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439903/PHESPV1114.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439903/PHESPV1114.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439903/ERR1439903_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439903/ERR1439903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439903/PHESPV1114.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439903/PHESPV1114.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102013092;104080637 ERS1195282 ERX1510281 GENOMIC 321654991 2016-06-10 PHESPV1114 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439903/PHESPV1114.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439903/PHESPV1114.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439903 PHESPV1114 ERR1439924 PHESPV1135 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439924 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439924 984e32c984011d6e4214dc994c6b29fb;2e7a9e6c5f72470baa64c8126b245c3a 1313 134911783 4ac2e9ea94fa2c844163d835baaf5a8d;87ccb1b859b93d64b9c972263a520909 SAMEA4024193 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439924/ERR1439924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439924/ERR1439924_2.fastq.gz 1607399 WGS PHESPV1135 RANDOM 90931509;93725324 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4deeba0b2ad3ba79da2c9de2a8b3b8f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439924/ERR1439924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439924/ERR1439924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439924/PHESPV1135.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439924/PHESPV1135.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439924/ERR1439924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439924/ERR1439924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439924/PHESPV1135.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439924/PHESPV1135.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96216617;99001875 ERS1195303 ERX1510302 GENOMIC 319765343 2016-06-10 PHESPV1135 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439924/PHESPV1135.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439924/PHESPV1135.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439924 PHESPV1135 ERR1439947 PHESPV1158 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439947 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439947 01f5401c954c1866a2ce8f1f58916308;8e4de227d9eed2309760fdea8c5e808a 1313 131080167 d9c8796592fa129088585a21fa078c15;536a0202b3d9e41202a8e1bd66848371 SAMEA4024216 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439947/ERR1439947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439947/ERR1439947_2.fastq.gz 1466693 WGS PHESPV1158 RANDOM 87245089;89999944 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 66818c84c71dec379365ec132c351c10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439947/ERR1439947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439947/ERR1439947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439947/PHESPV1158.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439947/PHESPV1158.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439947/ERR1439947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439947/ERR1439947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439947/PHESPV1158.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439947/PHESPV1158.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92168154;94896400 ERS1195326 ERX1510325 GENOMIC 291189065 2016-06-10 PHESPV1158 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439947/PHESPV1158.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439947/PHESPV1158.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439947 PHESPV1158 ERR1439937 PHESPV1148 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439937 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439937 6ddc34f767dd604df3c01c54af842736;bda8ca319949b893f8a4c90628c68705 1313 123154555 1e64388811bd329289bf3e1421a85c43;ead7488b3871045285d40dfd70bb879c SAMEA4024206 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439937/ERR1439937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439937/ERR1439937_2.fastq.gz 1461783 WGS PHESPV1148 RANDOM 82367567;85214677 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c31c74e599522d6420f608023aaacde ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439937/ERR1439937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439937/ERR1439937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439937/PHESPV1148.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439937/PHESPV1148.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439937/ERR1439937_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439937/ERR1439937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439937/PHESPV1148.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439937/PHESPV1148.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87243649;90067521 ERS1195316 ERX1510315 GENOMIC 290539665 2016-06-10 PHESPV1148 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439937/PHESPV1148.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439937/PHESPV1148.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439937 PHESPV1148 ERR1440032 PHESPV1243 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440032 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440032 8d8c141d54a9119152aed9eddc0035e5;d175f2e4588cb49c7201ac4a812c78bd 1313 201444365 d70afee4331f594e1c9567b0a7799e01;61192a9df7bb618f2c3a6fe89889db96 SAMEA4024301 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440032/ERR1440032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440032/ERR1440032_2.fastq.gz 2205940 WGS PHESPV1243 RANDOM 133653804;138034167 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5eaa5f7ed514ff8666e37561fe5e063 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440032/ERR1440032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440032/ERR1440032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440032/PHESPV1243.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440032/PHESPV1243.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440032/ERR1440032_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440032/ERR1440032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440032/PHESPV1243.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440032/PHESPV1243.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 140576809;144904354 ERS1195411 ERX1510410 GENOMIC 436607146 2016-06-10 PHESPV1243 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440032/PHESPV1243.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440032/PHESPV1243.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440032 PHESPV1243 ERR1440053 PHESPV1264 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440053 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440053 c168ccd58f07cfdc391bcf5e7ef59d1e;73c93215aea27d55014040405fb259af 1313 213216784 0cb22b36540199a5ca6f9bd1ec06e8b6;4bb264a12caf963cec4e070cffa2ef59 SAMEA4024322 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440053/ERR1440053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440053/ERR1440053_2.fastq.gz 2358278 WGS PHESPV1264 RANDOM 142826897;145839911 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9f3605ef40df1f66326f3ac0ea3b65d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440053/ERR1440053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440053/ERR1440053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440053/PHESPV1264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440053/PHESPV1264.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440053/ERR1440053_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440053/ERR1440053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440053/PHESPV1264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440053/PHESPV1264.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 150183653;153149888 ERS1195432 ERX1510431 GENOMIC 467540932 2016-06-10 PHESPV1264 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440053/PHESPV1264.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440053/PHESPV1264.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440053 PHESPV1264 ERR1440056 PHESPV1267 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440056 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440056 b3f18eca8dd9fd458bd2044b04c132e1;90493720659f1958e8651bf0474196c3 1313 227897429 13332a6712bad52c50f23ede2e0071fa;a20e2eb21f515ce71ee0f3cd68563dfd SAMEA4024325 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440056/ERR1440056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440056/ERR1440056_2.fastq.gz 2515400 WGS PHESPV1267 RANDOM 152649153;155720220 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4926449cd436313e33204eb734b652bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440056/ERR1440056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440056/ERR1440056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440056/PHESPV1267.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440056/PHESPV1267.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440056/ERR1440056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440056/ERR1440056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440056/PHESPV1267.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440056/PHESPV1267.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 160445608;163470299 ERS1195435 ERX1510434 GENOMIC 498422765 2016-06-10 PHESPV1267 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440056/PHESPV1267.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440056/PHESPV1267.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440056 PHESPV1267 ERR1440062 PHESPV1273 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440062 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440062 d5ffd3ae2e7c92378aa350652f6e6db9;4168214f69df1575030ab22911932e6a 1313 120311771 6b2bc6c6234f5d70a7a8a7511604ab09;1d8e9854844542e995508e8a75f13816 SAMEA4024331 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440062/ERR1440062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440062/ERR1440062_2.fastq.gz 1376241 WGS PHESPV1273 RANDOM 80084388;83095726 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1f25a27176dc08abe63b79c557fbb560 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440062/ERR1440062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440062/ERR1440062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440062/PHESPV1273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440062/PHESPV1273.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440062/ERR1440062_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440062/ERR1440062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440062/PHESPV1273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440062/PHESPV1273.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84661751;87642492 ERS1195441 ERX1510440 GENOMIC 273375053 2016-06-10 PHESPV1273 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440062/PHESPV1273.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440062/PHESPV1273.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440062 PHESPV1273 ERR1440076 PHESPV1287 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440076 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440076 3f4c68bd33446436e2a2b701fdbafc1d;27bf72b1cf94d0e7b6cc36d4d4966e60 1313 151272523 fca1bea76d3e1cf035375eeed989d6f4;776e621d4ba0d257da0c0d003a0c6ca6 SAMEA4024345 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440076/ERR1440076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440076/ERR1440076_2.fastq.gz 1703001 WGS PHESPV1287 RANDOM 98440857;104610293 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c91f00a5dc3d36b16f1932c8d4c328af ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440076/ERR1440076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440076/ERR1440076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440076/PHESPV1287.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440076/PHESPV1287.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440076/ERR1440076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440076/ERR1440076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440076/PHESPV1287.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440076/PHESPV1287.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103929680;110034470 ERS1195455 ERX1510454 GENOMIC 337569968 2016-06-10 PHESPV1287 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440076/PHESPV1287.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440076/PHESPV1287.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440076 PHESPV1287 ERR1440077 PHESPV1288 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440077 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440077 9a62359735500ac3604ef10cba4e80cc;ac6a0b59a329e0a4069c31692b645bc7 1313 135041605 fa2ee99ed2c8b8458a8aafe6b6a18538;223e144405753be08ca7b15989c62590 SAMEA4024346 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440077/ERR1440077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440077/ERR1440077_2.fastq.gz 1544955 WGS PHESPV1288 RANDOM 89596055;93002544 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e28a5cb7d7fad01883a1c9569602dd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440077/ERR1440077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440077/ERR1440077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440077/PHESPV1288.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440077/PHESPV1288.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440077/ERR1440077_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440077/ERR1440077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440077/PHESPV1288.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440077/PHESPV1288.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94658184;98024833 ERS1195456 ERX1510455 GENOMIC 306729817 2016-06-10 PHESPV1288 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440077/PHESPV1288.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440077/PHESPV1288.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440077 PHESPV1288 ERR1440108 PHESPV1319 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440108 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440108 54be644fd5c54f2d043888e810261fb0;077c4b94a3f25cbb4127ca23fbc44f0f 1313 130963105 11e65caaea427553a6e2f874146815be;ff5f2286da6ff48e8ded32ecd8cd64ca SAMEA4024377 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440108/ERR1440108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440108/ERR1440108_2.fastq.gz 1487153 WGS PHESPV1319 RANDOM 87142787;90415735 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac4849d52d25ea5cc9c7982ee31c7a1a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440108/ERR1440108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440108/ERR1440108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440108/PHESPV1319.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440108/PHESPV1319.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440108/ERR1440108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440108/ERR1440108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440108/PHESPV1319.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440108/PHESPV1319.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92122447;95289121 ERS1195487 ERX1510486 GENOMIC 295368490 2016-06-10 PHESPV1319 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440108/PHESPV1319.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440108/PHESPV1319.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440108 PHESPV1319 ERR1440113 PHESPV1324 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440113 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440113 42b72f95853eb577a628f228d49a3a65;4ad18e17bb60810715d83d87503e1f6f 1313 138081575 707c7ec34f05de561e2642ea213086d6;f642a725b4be335fb639e80a4ed4c150 SAMEA4024382 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440113/ERR1440113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440113/ERR1440113_2.fastq.gz 1564430 WGS PHESPV1324 RANDOM 91844287;95160339 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aa3280ca6bb8e50cb4e6ae1e76bde9be ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440113/ERR1440113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440113/ERR1440113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440113/PHESPV1324.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440113/PHESPV1324.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440113/ERR1440113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440113/ERR1440113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440113/PHESPV1324.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440113/PHESPV1324.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97037595;100244886 ERS1195492 ERX1510491 GENOMIC 310625816 2016-06-10 PHESPV1324 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440113/PHESPV1324.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440113/PHESPV1324.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440113 PHESPV1324 ERR1440120 PHESPV1331 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440120 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440120 94220b8ee50b686c309b8094f9c4e7fd;d92567e0f5fe9cda93ce8253f86c7e1f 1313 121046925 8dfac2a47ca1fb2df29a974a937eb334;621e28dc5c25880264992a09b4753591 SAMEA4024389 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440120/ERR1440120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440120/ERR1440120_2.fastq.gz 1347547 WGS PHESPV1331 RANDOM 79413752;83968641 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 738e163d5fa8361548a9cb4469ab8916 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440120/ERR1440120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440120/ERR1440120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440120/PHESPV1331.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440120/PHESPV1331.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440120/ERR1440120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440120/ERR1440120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440120/PHESPV1331.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440120/PHESPV1331.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83958540;88398098 ERS1195499 ERX1510498 GENOMIC 267113741 2016-06-10 PHESPV1331 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440120/PHESPV1331.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440120/PHESPV1331.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440120 PHESPV1331 ERR1440128 PHESPV1340 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440128 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440128 ca77c1e7912c0e8c55d735a182e4a83e;4970a1165de74f19363dc96b1cea4d98 1313 110774892 18e1fa42e656527d1c6e37a094f769d1;ffa6e983555f951fa1ab5ad7b3003ec3 SAMEA4024397 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440128/ERR1440128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440128/ERR1440128_2.fastq.gz 1249203 WGS PHESPV1340 RANDOM 73590010;76388889 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7887addf54979e9289322662d4a3b83e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440128/ERR1440128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440128/ERR1440128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440128/PHESPV1340.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440128/PHESPV1340.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440128/ERR1440128_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440128/ERR1440128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440128/PHESPV1340.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440128/PHESPV1340.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77850834;80556544 ERS1195507 ERX1510506 GENOMIC 247955573 2016-06-10 PHESPV1340 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440128/PHESPV1340.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440128/PHESPV1340.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440128 PHESPV1340 ERR1440132 PHESPV1344 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440132 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440132 7a3458b013c9f7472af1e185f3138023;ab6bc9c2cbd23323ebcc708984f7eb73 1313 100977046 3fe742edff236572863b1aaba55cbc4e;10d9ce2468bb68bd1e82451fcca6fb1b SAMEA4024401 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440132/ERR1440132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440132/ERR1440132_2.fastq.gz 1132157 WGS PHESPV1344 RANDOM 66731780;69881089 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1c93e7e2147d3f1c5c605a64db26eeab ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440132/ERR1440132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440132/ERR1440132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440132/PHESPV1344.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440132/PHESPV1344.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440132/ERR1440132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440132/ERR1440132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440132/PHESPV1344.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440132/PHESPV1344.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70638722;73694400 ERS1195511 ERX1510510 GENOMIC 224577229 2016-06-10 PHESPV1344 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440132/PHESPV1344.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440132/PHESPV1344.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440132 PHESPV1344 ERR1440137 PHESPV1350 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440137 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440137 0f4b9f4da960f1c9b0c5909f9104a45d;f48bbdb48c4d793b897fc2226f973b1c 1313 105400042 eba38e190c70214bc64fef51f73b1478;dcf50f3abee39fa69dbbb8caefba76a7 SAMEA4024406 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440137/ERR1440137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440137/ERR1440137_2.fastq.gz 1177969 WGS PHESPV1350 RANDOM 69912568;72331889 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 791f1732ddc2b601dcfc913a3795f1ae ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440137/ERR1440137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440137/ERR1440137_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440137/PHESPV1350.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440137/PHESPV1350.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440137/ERR1440137_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440137/ERR1440137_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440137/PHESPV1350.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440137/PHESPV1350.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73962459;76294627 ERS1195516 ERX1510515 GENOMIC 233759178 2016-06-10 PHESPV1350 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440137/PHESPV1350.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440137/PHESPV1350.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440137 PHESPV1350 ERR1440166 PHESPV1379 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440166 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440166 b3e4c09cfa82f2c3bad7f2c300ae2e50;d27a2221497bf759e208e16544a66eea 1313 140777943 9018e907a7a7f9798da0075004e8dab2;7530cb20deeaca23d2b6a5561a743168 SAMEA4024435 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440166/ERR1440166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440166/ERR1440166_2.fastq.gz 1586329 WGS PHESPV1379 RANDOM 93697260;97106406 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d418bfc9e47dfcc834cdcec2b3abef3e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440166/ERR1440166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440166/ERR1440166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440166/PHESPV1379.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440166/PHESPV1379.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440166/ERR1440166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440166/ERR1440166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440166/PHESPV1379.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440166/PHESPV1379.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99004444;102314213 ERS1195545 ERX1510544 GENOMIC 314885681 2016-06-10 PHESPV1379 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440166/PHESPV1379.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440166/PHESPV1379.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440166 PHESPV1379 ERR1440170 PHESPV1383 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440170 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440170 68a34238a9098bec03362176291d2bac;37f41c081cd4765422f2d50cb66f5c6b 1313 111438775 a9333d75045c0dcfdaaf0bfe60e8b052;358e40a1c96d2062c5b91fa138b7fc81 SAMEA4024439 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440170/ERR1440170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440170/ERR1440170_2.fastq.gz 1262662 WGS PHESPV1383 RANDOM 74116913;76644920 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4e269016d82dd701a7c6bbee4ef41fbc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440170/ERR1440170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440170/ERR1440170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440170/PHESPV1383.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440170/PHESPV1383.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440170/ERR1440170_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440170/ERR1440170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440170/PHESPV1383.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440170/PHESPV1383.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78422400;80854566 ERS1195549 ERX1510548 GENOMIC 250659227 2016-06-10 PHESPV1383 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440170/PHESPV1383.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440170/PHESPV1383.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440170 PHESPV1383 ERR1440176 PHESPV1389 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440176 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440176 6e6f2ad147bac0033c86c30c1932e50d;1e82cb58429d614925c2dd939930faef 1313 122411007 cda8622e69b2b13fa548f24574fd3195;8fe7d18e13fff52ce285a0042e2494f0 SAMEA4024445 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440176/ERR1440176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440176/ERR1440176_2.fastq.gz 1380805 WGS PHESPV1389 RANDOM 81670009;84103833 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10f243dc6b2b6aebe1c4185cc853330f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440176/ERR1440176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440176/ERR1440176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440176/PHESPV1389.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440176/PHESPV1389.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440176/ERR1440176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440176/ERR1440176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440176/PHESPV1389.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440176/PHESPV1389.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86356463;88694677 ERS1195555 ERX1510554 GENOMIC 274133342 2016-06-10 PHESPV1389 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440176/PHESPV1389.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440176/PHESPV1389.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440176 PHESPV1389 ERR1440184 PHESPV1397 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440184 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440184 c8cd497dbe7a18c7ebbdf9bd13645955;fb44b40de572da16ec79d31dceda056e 1313 163805529 aed09074f6e72ce2b438b3aad327d66a;355380e86efcaff4f913d822ed368ef7 SAMEA4024453 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440184/ERR1440184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440184/ERR1440184_2.fastq.gz 1715793 WGS PHESPV1397 RANDOM 108029186;111118147 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ce2aa3ce6189a5117e7c4a61be65b66 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440184/ERR1440184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440184/ERR1440184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440184/PHESPV1397.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440184/PHESPV1397.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440184/ERR1440184_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440184/ERR1440184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440184/PHESPV1397.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440184/PHESPV1397.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113673315;116683214 ERS1195563 ERX1510562 GENOMIC 338408863 2016-06-10 PHESPV1397 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440184/PHESPV1397.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440184/PHESPV1397.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440184 PHESPV1397 ERR1440187 PHESPV1401 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440187 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440187 1d4775247b48e9e24c11fab50870992e;779d8c5170b940e6444936571e13264a 1313 157482473 cd433c1f9739fc36b7e25f4e63eb3221;f04ec5d824a65dec75460d4d82cf8d4e SAMEA4024456 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440187/ERR1440187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440187/ERR1440187_2.fastq.gz 1798934 WGS PHESPV1401 RANDOM 104894598;108118201 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 40fdb7b9f1cd4347d6d5ea63f9660f36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440187/ERR1440187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440187/ERR1440187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440187/PHESPV1401.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440187/PHESPV1401.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440187/ERR1440187_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440187/ERR1440187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440187/PHESPV1401.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440187/PHESPV1401.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110674877;113865009 ERS1195566 ERX1510565 GENOMIC 356545192 2016-06-10 PHESPV1401 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440187/PHESPV1401.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440187/PHESPV1401.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440187 PHESPV1401 ERR1440259 PHESPV1474 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440259 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440259 dc5c11d61b7da268c250cc121b11e1c5;fcb0c48ae9f9ee11d7cdf58b27287fb2 1313 133307412 c3d44c1931c95e04cf1f7382c2302fea;6cbd56ffc1d784a133f95f7c087f5bdd SAMEA4024528 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440259/ERR1440259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440259/ERR1440259_2.fastq.gz 1583269 WGS PHESPV1474 RANDOM 89311462;93382378 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bca800fc37485624cfa35a04ef3f8574 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440259/ERR1440259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440259/ERR1440259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440259/PHESPV1474.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440259/PHESPV1474.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440259/ERR1440259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440259/ERR1440259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440259/PHESPV1474.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440259/PHESPV1474.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94486363;98531720 ERS1195638 ERX1510637 GENOMIC 314296788 2016-06-10 PHESPV1474 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440259/PHESPV1474.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440259/PHESPV1474.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440259 PHESPV1474 ERR1440285 PHESPV1500 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440285 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440285 a59b6ae34521dd73f07c83b3630b1c5c;ebe79acafd50bbcac364432c61b90ae9 1313 142709307 604bddba98588d3ea7f8f679287771f4;5b4d357c866fea71cec6d90b565c848a SAMEA4024554 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440285/ERR1440285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440285/ERR1440285_2.fastq.gz 1714684 WGS PHESPV1500 RANDOM 96445885;99561720 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 868b6b946b6e2d661b4ba06e7fca91c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440285/ERR1440285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440285/ERR1440285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440285/PHESPV1500.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440285/PHESPV1500.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440285/ERR1440285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440285/ERR1440285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440285/PHESPV1500.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440285/PHESPV1500.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102045249;105147816 ERS1195664 ERX1510663 GENOMIC 340657348 2016-06-10 PHESPV1500 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440285/PHESPV1500.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440285/PHESPV1500.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440285 PHESPV1500 ERR1440302 PHESPV1517 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440302 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440302 6cfdc60c53b17b0894687e3bc0292bba;13b1252d32cc6937b10f330ab4d31579 1313 148373897 1fe5ae1f50bdbb49fbf330414f43f2bd;b2f99342effb676c8a9d65397260035b SAMEA4024571 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440302/ERR1440302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440302/ERR1440302_2.fastq.gz 1775624 WGS PHESPV1517 RANDOM 100573058;103034335 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 49b529ae3f070f8a48b35d4208c84954 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440302/ERR1440302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440302/ERR1440302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440302/PHESPV1517.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440302/PHESPV1517.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440302/ERR1440302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440302/ERR1440302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440302/PHESPV1517.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440302/PHESPV1517.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106333876;108805842 ERS1195681 ERX1510680 GENOMIC 352858937 2016-06-10 PHESPV1517 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440302/PHESPV1517.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440302/PHESPV1517.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440302 PHESPV1517 ERR1439022 PHESPV0233 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439022 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439022 f6f656dae6a85f8c2a9f6bed9530bd9e;41c5d15c49b6d352e2573a9803ff29df 1313 315037323 a7c9a682c6c916361f506335bf663dd1;2fc538da21ab197ad80f6ae1373fb44c SAMEA4023291 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439022/ERR1439022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439022/ERR1439022_2.fastq.gz 2487528 WGS PHESPV0233 RANDOM 192977372;200163286 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 44eabcec321e643b99cec51803b07531 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439022/ERR1439022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439022/ERR1439022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439022/PHESPV0233.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439022/PHESPV0233.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439022/ERR1439022_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439022/ERR1439022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439022/PHESPV0233.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439022/PHESPV0233.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 200541858;207622753 ERS1194401 ERX1509400 GENOMIC 480365040 2016-06-10 PHESPV0233 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439022/PHESPV0233.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439022/PHESPV0233.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439022 PHESPV0233 ERR1439435 PHESPV0646 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439435 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439435 e02c5855b33ed6441a732ee3b9467d4b;61e8f152159d885423ded6d480d32e01 1313 159935605 9f21098d3649bd5a60b749d2ceba5243;57c1a40493331a748854c666a8d02d66 SAMEA4023704 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439435/ERR1439435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439435/ERR1439435_2.fastq.gz 1979361 WGS PHESPV0646 RANDOM 106724865;111718820 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b912409f2012ea177d38e60dd55a11b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439435/ERR1439435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439435/ERR1439435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439435/PHESPV0646.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439435/PHESPV0646.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439435/ERR1439435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439435/ERR1439435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439435/PHESPV0646.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439435/PHESPV0646.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113019723;117981053 ERS1194814 ERX1509813 GENOMIC 387325927 2016-06-10 PHESPV0646 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439435/PHESPV0646.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439435/PHESPV0646.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439435 PHESPV0646 ERR1439634 PHESPV0845 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439634 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439634 69f90bfb00179945ef2c2ae253f81a6e;3f50c8f4bfb90b523cbb5d0837a71118 1313 147383441 72f98ddd999374f2c89a15db05b584d5;6f6fb1850a21351a0408e201467877e0 SAMEA4023903 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439634/ERR1439634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439634/ERR1439634_2.fastq.gz 1605072 WGS PHESPV0845 RANDOM 106429305;106204532 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e1d23fca2697d4f6cc3c0d887058261 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439634/ERR1439634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439634/ERR1439634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439634/PHESPV0845.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439634/PHESPV0845.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439634/ERR1439634_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439634/ERR1439634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439634/PHESPV0845.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439634/PHESPV0845.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102240899;102022556 ERS1195013 ERX1510012 GENOMIC 306759468 2016-06-10 PHESPV0845 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439634/PHESPV0845.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439634/PHESPV0845.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439634 PHESPV0845 ERR1439807 PHESPV1018 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439807 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439807 e05d95b0b4bb208715625a9f7e1a1cb7;dfe6a998bec42ee4380f014e6d7bc3d7 1313 122998228 bd27133c3545a4c823e02cc59addea84;77b3cbbcf5b5cf0b868195263f2489df SAMEA4024076 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439807/ERR1439807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439807/ERR1439807_2.fastq.gz 1362107 WGS PHESPV1018 RANDOM 89210810;89015178 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 776f59da3ce36e0e95eba6d40e8ddfec ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439807/ERR1439807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439807/ERR1439807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439807/PHESPV1018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439807/PHESPV1018.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439807/ERR1439807_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439807/ERR1439807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439807/PHESPV1018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439807/PHESPV1018.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85781691;85602977 ERS1195186 ERX1510185 GENOMIC 263142336 2016-06-10 PHESPV1018 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439807/PHESPV1018.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439807/PHESPV1018.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439807 PHESPV1018 ERR1439955 PHESPV1166 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439955 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439955 0719851fe07dea3d9b9bdb63aeba201b;b433073c4a427fdfbd65761113427d8d 1313 117667356 402f26a03c0f53734b2191d93e8fce71;b034848cc202a926be871271a3e5cb6b SAMEA4024224 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439955/ERR1439955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439955/ERR1439955_2.fastq.gz 1328976 WGS PHESPV1166 RANDOM 76533452;82161787 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0512ff01ddd878704db56fdd6ff1531d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439955/ERR1439955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439955/ERR1439955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439955/PHESPV1166.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439955/PHESPV1166.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439955/ERR1439955_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439955/ERR1439955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439955/PHESPV1166.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439955/PHESPV1166.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80973772;86494217 ERS1195334 ERX1510333 GENOMIC 263345786 2016-06-10 PHESPV1166 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439955/PHESPV1166.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439955/PHESPV1166.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439955 PHESPV1166 ERR1439973 PHESPV1184 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439973 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439973 dae0e842238305574a72733c57a76415;6af6080712decafb25da7403623a8a2f 1313 107757964 8dfca3f1b7ec06489bcfeee9658ca054;e93343489c3660a72ecb6066215511e4 SAMEA4024242 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439973/ERR1439973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439973/ERR1439973_2.fastq.gz 1238804 WGS PHESPV1184 RANDOM 71370631;74512094 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c4a69a837a8f4fc0371a9a210c9810e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439973/ERR1439973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439973/ERR1439973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439973/PHESPV1184.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439973/PHESPV1184.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439973/ERR1439973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439973/ERR1439973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439973/PHESPV1184.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439973/PHESPV1184.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75549531;78634198 ERS1195352 ERX1510351 GENOMIC 245926330 2016-06-10 PHESPV1184 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439973/PHESPV1184.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439973/PHESPV1184.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439973 PHESPV1184 ERR1439982 PHESPV1193 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439982 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439982 a198904f309bed3ff7ef44042add7ebd;aa4012b1ced1cbada13a82c7764a6171 1313 106185133 80da8edfd6d49a7c141917819f68e8c4;b547bdc8b2ec77c39583216ea55c1fc3 SAMEA4024251 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439982/ERR1439982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439982/ERR1439982_2.fastq.gz 1215036 WGS PHESPV1193 RANDOM 70378094;73511802 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e4f0db4a7eb07c1fd02e40a80a44f3d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439982/ERR1439982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439982/ERR1439982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439982/PHESPV1193.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439982/PHESPV1193.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439982/ERR1439982_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439982/ERR1439982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439982/PHESPV1193.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439982/PHESPV1193.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74506927;77581893 ERS1195361 ERX1510360 GENOMIC 241178966 2016-06-10 PHESPV1193 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439982/PHESPV1193.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439982/PHESPV1193.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439982 PHESPV1193 ERR1440024 PHESPV1235 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440024 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440024 8744ca7d3a6481597a91d028cc4d5b87;a06f0d09f3d97948ddff848aed1c81cb 1313 92657878 557d56f3063a85d3b8be0315fc9bc2d3;71ae691fc89c3ba95eaea7accb2cdc41 SAMEA4024293 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440024/ERR1440024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440024/ERR1440024_2.fastq.gz 1055066 WGS PHESPV1235 RANDOM 61220316;63391248 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e3a4046fb29ea8e64f6b1c556a639146 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440024/ERR1440024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440024/ERR1440024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440024/PHESPV1235.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440024/PHESPV1235.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440024/ERR1440024_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440024/ERR1440024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440024/PHESPV1235.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440024/PHESPV1235.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64833757;66973338 ERS1195403 ERX1510402 GENOMIC 209010431 2016-06-10 PHESPV1235 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440024/PHESPV1235.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440024/PHESPV1235.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440024 PHESPV1235 ERR1440098 PHESPV1309 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440098 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440098 ba0416c614750338c1d689c71b58fba9;0645f5c9e8dfd26ccd81874eae8ae6ba 1313 89542974 c76134aebea5f115eaf9c0445d559f37;1714db5a13b304fc5c074607a0522e1d SAMEA4024367 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440098/ERR1440098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440098/ERR1440098_2.fastq.gz 1011824 WGS PHESPV1309 RANDOM 59570621;61596882 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bbcb849eeb4c9f72fa160cafd89428d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440098/ERR1440098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440098/ERR1440098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440098/PHESPV1309.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440098/PHESPV1309.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440098/ERR1440098_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440098/ERR1440098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440098/PHESPV1309.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440098/PHESPV1309.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63106753;65051894 ERS1195477 ERX1510476 GENOMIC 200829530 2016-06-10 PHESPV1309 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440098/PHESPV1309.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440098/PHESPV1309.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440098 PHESPV1309 ERR1440039 PHESPV1250 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440039 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440039 5444cec8a70399ab89f402a893bca9eb;43a72967a05a5139b4f739b218733955 1313 146807163 958a7e0b1c32adaf21f0c886904e4830;4983039e515b51363cbefc5be77d381f SAMEA4024308 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440039/ERR1440039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440039/ERR1440039_2.fastq.gz 1619397 WGS PHESPV1250 RANDOM 98626025;100196292 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4c8056386db07d04f8c27a4dd425b436 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440039/ERR1440039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440039/ERR1440039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440039/PHESPV1250.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440039/PHESPV1250.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440039/ERR1440039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440039/ERR1440039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440039/PHESPV1250.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440039/PHESPV1250.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103996320;105539792 ERS1195418 ERX1510417 GENOMIC 320998050 2016-06-10 PHESPV1250 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440039/PHESPV1250.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440039/PHESPV1250.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440039 PHESPV1250 ERR1440011 PHESPV1222 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440011 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440011 1fe3246b046cd800b6c82f763ed33da8;52ee2294e76747c3cc8e2b4edc0a856f 1313 123836581 05fa74d1f5fc5de4e993cfbeb236f0e0;20e3f2fd3122487294a3f66ea725b2a6 SAMEA4024280 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440011/ERR1440011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440011/ERR1440011_2.fastq.gz 1415786 WGS PHESPV1222 RANDOM 82295823;85482958 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff27007b5af98dd0f0e174728d5fa446 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440011/ERR1440011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440011/ERR1440011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440011/PHESPV1222.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440011/PHESPV1222.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440011/ERR1440011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440011/ERR1440011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440011/PHESPV1222.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440011/PHESPV1222.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87028296;90151065 ERS1195390 ERX1510389 GENOMIC 281145726 2016-06-10 PHESPV1222 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440011/PHESPV1222.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440011/PHESPV1222.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440011 PHESPV1222 ERR1440141 PHESPV1354 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440141 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440141 e72935298d616ea2037de0538e548cd7;5c50847ab9e6065c5db9461250f5966f 1313 98221294 0385b557a839da9b35c9b4917feececd;35f2ed073fd8e19c0d1eb97557efc661 SAMEA4024410 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440141/ERR1440141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440141/ERR1440141_2.fastq.gz 1109152 WGS PHESPV1354 RANDOM 64856644;68286216 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2f060a1e7dd42ba8563585243828d7f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440141/ERR1440141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440141/ERR1440141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440141/PHESPV1354.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440141/PHESPV1354.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440141/ERR1440141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440141/ERR1440141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440141/PHESPV1354.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440141/PHESPV1354.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68699188;72025523 ERS1195520 ERX1510519 GENOMIC 220078701 2016-06-10 PHESPV1354 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440141/PHESPV1354.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440141/PHESPV1354.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440141 PHESPV1354 ERR1440165 PHESPV1378 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440165 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440165 154057eaf7fe52f8de4b002aae3ff818;40aba004c7c1c86b89ffd496c205c4a0 1313 117385607 2769a2e97ffd046cb76421e32972f2d1;e0b2c0b28b737ed3afd58156cc2e4849 SAMEA4024434 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440165/ERR1440165_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440165/ERR1440165_2.fastq.gz 1315004 WGS PHESPV1378 RANDOM 78082543;80762639 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 137882db50743109380b84bd0f00a763 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440165/ERR1440165_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440165/ERR1440165_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440165/PHESPV1378.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440165/PHESPV1378.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440165/ERR1440165_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440165/ERR1440165_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440165/PHESPV1378.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440165/PHESPV1378.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82567348;85153932 ERS1195544 ERX1510543 GENOMIC 260995226 2016-06-10 PHESPV1378 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440165/PHESPV1378.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440165/PHESPV1378.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440165 PHESPV1378 ERR1440420 PHESPV1635 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440420 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440420 3b644478f97932366658a7615d755dc3;3ff1dbbe354cc9797356de7b8f6c6b4c 1313 160618732 72242a82fd249e10d0f1deb19710305a;d42c5f84ddc52107744ded68cf14619a SAMEA4024689 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440420/ERR1440420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440420/ERR1440420_2.fastq.gz 1756060 WGS PHESPV1635 RANDOM 115778348;117492250 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 218a01df0d72f3c2ee68c4578e440c33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440420/ERR1440420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440420/ERR1440420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440420/PHESPV1635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440420/PHESPV1635.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440420/ERR1440420_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440420/ERR1440420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440420/PHESPV1635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440420/PHESPV1635.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111245812;112960410 ERS1195799 ERX1510798 GENOMIC 344398172 2016-06-10 PHESPV1635 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440420/PHESPV1635.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440420/PHESPV1635.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440420 PHESPV1635 ERR1440411 PHESPV1626 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440411 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440411 2285fa51589c986d00ccf9f1625cfcfa;46d5b1e52b23336b757ef0325f549c3b 1313 118220576 e74b1050e39f2c8969790e31d521d018;20b974d3442d9cd07d3bce6d8de63f31 SAMEA4024680 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440411/ERR1440411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440411/ERR1440411_2.fastq.gz 1291388 WGS PHESPV1626 RANDOM 84283449;87018483 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6f55e5ab798517868b0e194687d2d75 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440411/ERR1440411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440411/ERR1440411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440411/PHESPV1626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440411/PHESPV1626.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440411/ERR1440411_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440411/ERR1440411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440411/PHESPV1626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440411/PHESPV1626.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81090594;83809990 ERS1195790 ERX1510789 GENOMIC 251265285 2016-06-10 PHESPV1626 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440411/PHESPV1626.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440411/PHESPV1626.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440411 PHESPV1626 ERR1440412 PHESPV1627 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440412 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440412 d0d064abb2dae568ebdd23ac57148cb0;416df4e19949013eb44c72da8f486ad8 1313 117044466 384076ea367a36bfe92cf9817fc0919f;29743f167cfe896b4ad6b8a87f3ba9fa SAMEA4024681 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440412/ERR1440412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440412/ERR1440412_2.fastq.gz 1278969 WGS PHESPV1627 RANDOM 84529826;85438165 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ac78f68cf21eecbe5b9b798dcbbb96e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440412/ERR1440412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440412/ERR1440412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440412/PHESPV1627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440412/PHESPV1627.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440412/ERR1440412_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440412/ERR1440412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440412/PHESPV1627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440412/PHESPV1627.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81376870;82283341 ERS1195791 ERX1510790 GENOMIC 251022065 2016-06-10 PHESPV1627 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440412/PHESPV1627.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440412/PHESPV1627.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440412 PHESPV1627 ERR1440444 PHESPV1659 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440444 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440444 185f74069d49281ea36889d8fdae0187;382dca5d42ed6016c022f5ba3384645a 1313 118490119 910c7ca63041d976f7b7fc85ada1997b;8ad1189612d87f05d81a6b63fb387510 SAMEA4024713 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440444/ERR1440444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440444/ERR1440444_2.fastq.gz 1306354 WGS PHESPV1659 RANDOM 84691194;87091123 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d02e31e0608da96f74a742fcd58db236 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440444/ERR1440444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440444/ERR1440444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440444/PHESPV1659.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440444/PHESPV1659.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440444/ERR1440444_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440444/ERR1440444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440444/PHESPV1659.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440444/PHESPV1659.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81468416;83857130 ERS1195823 ERX1510822 GENOMIC 253183306 2016-06-10 PHESPV1659 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440444/PHESPV1659.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440444/PHESPV1659.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440444 PHESPV1659 ERR1440462 PHESPV1677 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440462 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440462 a7fba11d1cd42df4af3f1b48e477bf7e;de545a000751f1d9656f2786c324cafc 1313 123416283 e4691a7ea19aa93451aa51225ad598a4;dc5fb56daec32d4c09f1b2df56c40001 SAMEA4024731 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440462/ERR1440462_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440462/ERR1440462_2.fastq.gz 1352648 WGS PHESPV1677 RANDOM 87812607;90146778 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e31efb862c5a2e8a33270d7e6088407e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440462/ERR1440462_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440462/ERR1440462_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440462/PHESPV1677.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440462/PHESPV1677.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440462/ERR1440462_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440462/ERR1440462_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440462/PHESPV1677.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440462/PHESPV1677.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84372157;86708488 ERS1195841 ERX1510840 GENOMIC 262204767 2016-06-10 PHESPV1677 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440462/PHESPV1677.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440462/PHESPV1677.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440462 PHESPV1677 ERR1440482 PHESPV1697 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440482 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440482 f916ebd658b5222ec8311be6232aa0b3;051ca0540f02cf3f090cc41243914f22 1313 102561745 66012887ce01ccab19325887bfb26afe;fa6e79dd56a78875c545aff1fc00c78f SAMEA4024751 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440482/ERR1440482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440482/ERR1440482_2.fastq.gz 1149323 WGS PHESPV1697 RANDOM 74103541;74251986 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f0134b99a08e14e20d7df6c8493a5658 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440482/ERR1440482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440482/ERR1440482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440482/PHESPV1697.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440482/PHESPV1697.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440482/ERR1440482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440482/ERR1440482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440482/PHESPV1697.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440482/PHESPV1697.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71227356;71384734 ERS1195861 ERX1510860 GENOMIC 219965997 2016-06-10 PHESPV1697 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440482/PHESPV1697.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440482/PHESPV1697.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440482 PHESPV1697 ERR1440491 PHESPV1706 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440491 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440491 d822cfa0212dfbab44c77951da37de81;5a5961a2cbf4aee1a772d930b3f61134 1313 139666336 bcb5cd12435a1a571fff879e70f2c6e3;74da79fd4876d583655971c05a85603d SAMEA4024760 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440491/ERR1440491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440491/ERR1440491_2.fastq.gz 1556407 WGS PHESPV1706 RANDOM 101204868;101938398 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 730799ada0de6d6028a056917514c4c2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440491/ERR1440491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440491/ERR1440491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440491/PHESPV1706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440491/PHESPV1706.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440491/ERR1440491_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440491/ERR1440491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440491/PHESPV1706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440491/PHESPV1706.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97216522;97956783 ERS1195870 ERX1510869 GENOMIC 301855185 2016-06-10 PHESPV1706 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440491/PHESPV1706.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440491/PHESPV1706.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440491 PHESPV1706 ERR1440493 PHESPV1708 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440493 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440493 3cc837ed628c053387c107c6cd1da0a9;b07458890962410d0b79e4f07b33ea4c 1313 77815425 11fc5acca3e83c87b700bfe19e2adf80;62fe395af370a33cb06aee89b402a727 SAMEA4024762 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440493/ERR1440493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440493/ERR1440493_2.fastq.gz 864570 WGS PHESPV1708 RANDOM 56192721;56447809 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b50ac6a57f3004f0352b01c0d00163fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440493/ERR1440493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440493/ERR1440493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440493/PHESPV1708.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440493/PHESPV1708.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440493/ERR1440493_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440493/ERR1440493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440493/PHESPV1708.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440493/PHESPV1708.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54028299;54291808 ERS1195872 ERX1510871 GENOMIC 166275870 2016-06-10 PHESPV1708 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440493/PHESPV1708.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440493/PHESPV1708.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440493 PHESPV1708 ERR1440495 PHESPV1710 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440495 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440495 9e179c904eeb032ccd17f12c3c9f9b25;36d788dce7dbb9926145794b03b11503 1313 116497874 ba6c7efad0a60878e34d1d204f6432b4;7527e321c2806fe8c7fa8549e547fc4f SAMEA4024764 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440495/ERR1440495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440495/ERR1440495_2.fastq.gz 1297038 WGS PHESPV1710 RANDOM 84065958;84357328 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b2f59a426c90598c9ad4aa44d5f562a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440495/ERR1440495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440495/ERR1440495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440495/PHESPV1710.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440495/PHESPV1710.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440495/ERR1440495_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440495/ERR1440495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440495/PHESPV1710.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440495/PHESPV1710.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80832468;81134426 ERS1195874 ERX1510873 GENOMIC 250216326 2016-06-10 PHESPV1710 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440495/PHESPV1710.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440495/PHESPV1710.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440495 PHESPV1710 ERR1440513 PHESPV1728 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440513 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440513 3d8f7ee51f1d92a281210d8e3f52d6f8;2c90e82f0bc6ce6148e51f6c6924909e 1313 130024400 f22c6df7e1b18cfccfd40158b1a5aaa6;08f2ea94cf449436360987b5cb0a9e7e SAMEA4024782 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440513/ERR1440513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440513/ERR1440513_2.fastq.gz 1436321 WGS PHESPV1728 RANDOM 93762457;94217034 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aeb19c1b718bdace177ff1c76f7ba5fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440513/ERR1440513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440513/ERR1440513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440513/PHESPV1728.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440513/PHESPV1728.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440513/ERR1440513_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440513/ERR1440513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440513/PHESPV1728.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440513/PHESPV1728.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90102153;90572628 ERS1195892 ERX1510891 GENOMIC 279221060 2016-06-10 PHESPV1728 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440513/PHESPV1728.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440513/PHESPV1728.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440513 PHESPV1728 ERR1440572 PHESPV1787 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440572 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440572 94b0db350aa5372515b9ebf69502406e;ab8e4be51b19ba57e91eaad099e805af 1313 116340155 39ba12d447281075901a5bb81a708a38;592417d2451abb124d69ece4ea948316 SAMEA4024841 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440572/ERR1440572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440572/ERR1440572_2.fastq.gz 1344335 WGS PHESPV1787 RANDOM 83717041;87383750 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9327a7d20fa369de1951c99f2e148a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440572/ERR1440572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440572/ERR1440572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440572/PHESPV1787.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440572/PHESPV1787.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440572/ERR1440572_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440572/ERR1440572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440572/PHESPV1787.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440572/PHESPV1787.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80468382;84059360 ERS1195951 ERX1510950 GENOMIC 265568149 2016-06-10 PHESPV1787 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440572/PHESPV1787.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440572/PHESPV1787.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440572 PHESPV1787 ERR1440802 PHESPV2017 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440802 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440802 aef2c334a3514c0962f440363b35cb3c;9cd78c1d6920dbcd4e1083da08115703 1313 164662032 eb4cfa92169cbd10f789226e03133ef2;ef9b0660aab325a8afeafc1907c9f2c2 SAMEA4025071 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440802/ERR1440802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440802/ERR1440802_2.fastq.gz 1804792 WGS PHESPV2017 RANDOM 118547707;119870573 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 47eb448485f2fa7730b0045c11f2d630 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440802/ERR1440802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440802/ERR1440802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440802/PHESPV2017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440802/PHESPV2017.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440802/ERR1440802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440802/ERR1440802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440802/PHESPV2017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440802/PHESPV2017.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113825904;115157610 ERS1196181 ERX1511180 GENOMIC 350784635 2016-06-10 PHESPV2017 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440802/PHESPV2017.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440802/PHESPV2017.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440802 PHESPV2017 ERR1438998 PHESPV0209 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438998 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438998 8f015d920d521e1a7e891e4be8a1b6c6;a373aa54bc2390c1851d4e312bcaa199 1313 193467542 fac00930cf2d45bd0fb66e4c571af3b3;5f6cc85e800a2a2b669410e252bc2da7 SAMEA4023267 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438998/ERR1438998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438998/ERR1438998_2.fastq.gz 1615598 WGS PHESPV0209 RANDOM 118172843;122882928 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 71bc42b2569fa1af4305960782faa6cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438998/ERR1438998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438998/ERR1438998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438998/PHESPV0209.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438998/PHESPV0209.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438998/ERR1438998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438998/ERR1438998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438998/PHESPV0209.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438998/PHESPV0209.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123358045;128096549 ERS1194377 ERX1509376 GENOMIC 316134832 2016-06-10 PHESPV0209 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438998/PHESPV0209.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438998/PHESPV0209.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438998 PHESPV0209 ERR1439247 PHESPV0458 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439247 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439247 21e4df20df28874e3b58cba2801cc843;d0e131b9e1f63152855501e81c25f452 1313 141447985 1f1d6ce3ac3bc0fed089da815f578565;2100b995e6920ff278513859e7af5c9c SAMEA4023516 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439247/ERR1439247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439247/ERR1439247_2.fastq.gz 1543842 WGS PHESPV0458 RANDOM 102863300;101640677 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff5fa0241668ad436fbf6ccc95c5a8e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439247/ERR1439247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439247/ERR1439247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439247/PHESPV0458.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439247/PHESPV0458.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439247/ERR1439247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439247/ERR1439247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439247/PHESPV0458.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439247/PHESPV0458.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98870010;97676109 ERS1194626 ERX1509625 GENOMIC 301673276 2016-06-10 PHESPV0458 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439247/PHESPV0458.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439247/PHESPV0458.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439247 PHESPV0458 ERR1439355 PHESPV0566 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439355 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439355 66f168523a8dede6beb20ceb4ac57c7e;660fd2fd5f90a621e557d6e811ec761b 1313 113120334 7ebaf2776157d3f67ef48865d87321cc;dad9fbd7158d9eb1d73072725c6aec9a SAMEA4023624 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439355/ERR1439355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439355/ERR1439355_2.fastq.gz 1261606 WGS PHESPV0566 RANDOM 82257568;81880499 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 61d63c1945f84c226ed1ae8f10deb13e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439355/ERR1439355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439355/ERR1439355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439355/PHESPV0566.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439355/PHESPV0566.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439355/ERR1439355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439355/ERR1439355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439355/PHESPV0566.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439355/PHESPV0566.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79093309;78738195 ERS1194734 ERX1509733 GENOMIC 246241263 2016-06-10 PHESPV0566 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439355/PHESPV0566.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439355/PHESPV0566.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439355 PHESPV0566 ERR1439345 PHESPV0556 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439345 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439345 3327b9fbe883c76d39a0de21df297325;029bea29cf6d73f0d4e87ab663a330ef 1313 116605107 45bfc8271f9e5670334b8fef96ecf5c6;dd7effe5e207035a4af64d82aca76466 SAMEA4023614 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439345/ERR1439345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439345/ERR1439345_2.fastq.gz 1285525 WGS PHESPV0556 RANDOM 84137733;84782716 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b69a46b65a505beb3fb83436677ee38b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439345/ERR1439345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439345/ERR1439345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439345/PHESPV0556.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439345/PHESPV0556.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439345/ERR1439345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439345/ERR1439345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439345/PHESPV0556.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439345/PHESPV0556.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80919392;81577829 ERS1194724 ERX1509723 GENOMIC 251992537 2016-06-10 PHESPV0556 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439345/PHESPV0556.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439345/PHESPV0556.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439345 PHESPV0556 ERR1439625 PHESPV0836 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439625 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439625 bb5090244ba27e0df311b65c1941f2a6;e1e45fee637d2836e8f5df92b0afff96 1313 184782663 59b7f5840e944666ba806b90c96a0925;af7a2ab2570369ec2eb99aaf0f8b8b95 SAMEA4023894 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439625/ERR1439625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439625/ERR1439625_2.fastq.gz 1978124 WGS PHESPV0836 RANDOM 132941191;133503218 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8de4637b2b2070fa9cedca6b7064710e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439625/ERR1439625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439625/ERR1439625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439625/PHESPV0836.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439625/PHESPV0836.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439625/ERR1439625_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439625/ERR1439625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439625/PHESPV0836.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439625/PHESPV0836.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127798026;128359245 ERS1195004 ERX1510003 GENOMIC 385386149 2016-06-10 PHESPV0836 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439625/PHESPV0836.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439625/PHESPV0836.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439625 PHESPV0836 ERR1439467 PHESPV0678 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439467 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439467 0e503063cbf6a58a17211fd0fea16c23;9318750d4d6df2fde15613f1a48443e4 1313 190084737 c2ca9f21eaac3ef3b41793d72e73ca5b;fad16e6819ccc03b6daf2eab4da8cd97 SAMEA4023736 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439467/ERR1439467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439467/ERR1439467_2.fastq.gz 2035971 WGS PHESPV0678 RANDOM 137055736;137121510 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e352ef0248ac2439d69a78ddaee157d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439467/ERR1439467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439467/ERR1439467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439467/PHESPV0678.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439467/PHESPV0678.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439467/ERR1439467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439467/ERR1439467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439467/PHESPV0678.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439467/PHESPV0678.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131780706;131847049 ERS1194846 ERX1509845 GENOMIC 397749978 2016-06-10 PHESPV0678 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439467/PHESPV0678.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439467/PHESPV0678.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439467 PHESPV0678 ERR1439651 PHESPV0862 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439651 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439651 3fe3bb630c93e7e0c75f6ad3be8b5926;d25e0942cd70bfb0fa072c7511e40c58 1313 122895155 089d621498dbd7938018f96867670219;7180f1a4002c4ff0edccb0c154aa414e SAMEA4023920 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439651/ERR1439651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439651/ERR1439651_2.fastq.gz 1399771 WGS PHESPV0862 RANDOM 81989037;84268375 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 725e3b558f00beb6790a68fd848cd1f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439651/ERR1439651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439651/ERR1439651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439651/PHESPV0862.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439651/PHESPV0862.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439651/ERR1439651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439651/ERR1439651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439651/PHESPV0862.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439651/PHESPV0862.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86691720;88966436 ERS1195030 ERX1510029 GENOMIC 277644703 2016-06-10 PHESPV0862 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439651/PHESPV0862.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439651/PHESPV0862.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439651 PHESPV0862 ERR1439809 PHESPV1020 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439809 ea322b58190abdba94a8d14a2d470627;ecbba05f8bb1172d5ffcb41a12fa7bbd 1313 240720729 101589c032c3c1346397407df7d039d7;abb6f2a689158d11786f00371404ba37 SAMEA4024078 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439809/ERR1439809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439809/ERR1439809_2.fastq.gz 2685551 WGS PHESPV1020 RANDOM 159491785;165131854 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ec63abc8d439ba796fd425aeb3d293c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439809/ERR1439809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439809/ERR1439809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439809/PHESPV1020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439809/PHESPV1020.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439809/ERR1439809_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439809/ERR1439809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439809/PHESPV1020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439809/PHESPV1020.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 167713378;173304667 ERS1195188 ERX1510187 GENOMIC 531415359 2016-06-10 PHESPV1020 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439809/PHESPV1020.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439809/PHESPV1020.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439809 PHESPV1020 ERR1439780 PHESPV0991 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439780 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439780 49dac97fcf8f940b3cd7fdcda8668910;1dddb607667b9314b8ad94256d8fd5a7 1313 170492272 15b13694aec034471a47e3db39925eed;a6e3a0d36565115572d0377839af01cd SAMEA4024049 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439780/ERR1439780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439780/ERR1439780_2.fastq.gz 1873300 WGS PHESPV0991 RANDOM 112797075;115003499 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9aeefa0ad067ea1f90210d04c3bf6c5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439780/ERR1439780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439780/ERR1439780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439780/PHESPV0991.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439780/PHESPV0991.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439780/ERR1439780_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439780/ERR1439780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439780/PHESPV0991.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439780/PHESPV0991.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118818311;120905793 ERS1195159 ERX1510158 GENOMIC 370520219 2016-06-10 PHESPV0991 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439780/PHESPV0991.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439780/PHESPV0991.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439780 PHESPV0991 ERR1439833 PHESPV1044 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439833 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439833 81603be43a58b2964ffbc50ae97b3ffd;92a32b1728a3224d21a69fdccffec2ba 1313 170098436 0c0acec3e0dd0f87770eccd340fe8489;eba4d18a566c5400e17b39a29ea0d9d0 SAMEA4024102 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439833/ERR1439833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439833/ERR1439833_2.fastq.gz 1753248 WGS PHESPV1044 RANDOM 109837927;116641901 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8467fff1d4a051895271d9c25e68a5fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439833/ERR1439833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439833/ERR1439833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439833/PHESPV1044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439833/PHESPV1044.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439833/ERR1439833_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439833/ERR1439833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439833/PHESPV1044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439833/PHESPV1044.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115607033;122290047 ERS1195212 ERX1510211 GENOMIC 343833888 2016-06-10 PHESPV1044 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439833/PHESPV1044.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439833/PHESPV1044.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439833 PHESPV1044 ERR1439834 PHESPV1045 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439834 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439834 33cc60628ed2ae608ae28f6f424e924b;962c4b408031777f56249eda3d0bf5c1 1313 186231828 dbab7622c66ff24048734183064d00f4;bf99be06774b68cd8186dce192d4d5a4 SAMEA4024103 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439834/ERR1439834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439834/ERR1439834_2.fastq.gz 1935203 WGS PHESPV1045 RANDOM 122207981;126548697 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7f35b7af9e75be5c16a1bb9d2d2bfeca ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439834/ERR1439834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439834/ERR1439834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439834/PHESPV1045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439834/PHESPV1045.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439834/ERR1439834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439834/ERR1439834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439834/PHESPV1045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439834/PHESPV1045.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128482954;132742007 ERS1195213 ERX1510212 GENOMIC 380904909 2016-06-10 PHESPV1045 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439834/PHESPV1045.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439834/PHESPV1045.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439834 PHESPV1045 ERR1439860 PHESPV1071 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439860 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439860 6545fb660ccf1d86dda8227d5a10c8f3;feff67393791646236bfc627f18614e5 1313 142742322 a27dfdec01ca4778f22ca2f322174fdb;b49bee0297d97318eda356f147f34d19 SAMEA4024129 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439860/ERR1439860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439860/ERR1439860_2.fastq.gz 1481920 WGS PHESPV1071 RANDOM 93617898;97066860 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline da67a5d6956ebfcede5a3066eac98072 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439860/ERR1439860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439860/ERR1439860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439860/PHESPV1071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439860/PHESPV1071.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439860/ERR1439860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439860/ERR1439860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439860/PHESPV1071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439860/PHESPV1071.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98567757;101926158 ERS1195239 ERX1510238 GENOMIC 291606354 2016-06-10 PHESPV1071 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439860/PHESPV1071.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439860/PHESPV1071.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439860 PHESPV1071 ERR1439893 PHESPV1104 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439893 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439893 2e20078f10e685e6679d1c8cfd96a6fc;90bbbfe0b3c1932d6b63005e4999fd6b 1313 171867696 475116885cbac008e26459b3de153032;2a4c3c0c8e70047178dc0c0d53c08cd0 SAMEA4024162 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439893/ERR1439893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439893/ERR1439893_2.fastq.gz 1915579 WGS PHESPV1104 RANDOM 113153205;118604827 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 31fa7aa45ae0d0da2fffa68bcf435290 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439893/ERR1439893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439893/ERR1439893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439893/PHESPV1104.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439893/PHESPV1104.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439893/ERR1439893_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439893/ERR1439893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439893/PHESPV1104.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439893/PHESPV1104.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119308536;124734468 ERS1195272 ERX1510271 GENOMIC 379639626 2016-06-10 PHESPV1104 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439893/PHESPV1104.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439893/PHESPV1104.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439893 PHESPV1104 ERR1439941 PHESPV1152 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439941 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439941 7d839cc259a4d62e468dec40e90cbcd6;6e1f2a69cc7efab360daf19691c5f022 1313 94012644 661a490e7b51335a2a5936b2e07963f6;1dffddb3fef466bbb9c21d2fe5b561b5 SAMEA4024210 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439941/ERR1439941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439941/ERR1439941_2.fastq.gz 1096344 WGS PHESPV1152 RANDOM 62454679;65265671 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7489b2aee488b21d0bc5c07db780c044 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439941/ERR1439941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439941/ERR1439941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439941/PHESPV1152.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439941/PHESPV1152.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439941/ERR1439941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439941/ERR1439941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439941/PHESPV1152.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439941/PHESPV1152.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66237860;68962756 ERS1195320 ERX1510319 GENOMIC 217408503 2016-06-10 PHESPV1152 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439941/PHESPV1152.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439941/PHESPV1152.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439941 PHESPV1152 ERR1439958 PHESPV1169 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439958 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439958 c07a1f9994804fb6c1cb7b1c2fcdea30;5596f11ecb6c51234ece39a88aed06ae 1313 167036597 95e4cb1ceb4ead761abdb5793ef40dd4;2f4c19b301e2d085bc6783611df27370 SAMEA4024227 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439958/ERR1439958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439958/ERR1439958_2.fastq.gz 1849733 WGS PHESPV1169 RANDOM 112261333;113804100 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c3d454e8bdf0453dc9884ed24ec3b17 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439958/ERR1439958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439958/ERR1439958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439958/PHESPV1169.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439958/PHESPV1169.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439958/ERR1439958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439958/ERR1439958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439958/PHESPV1169.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439958/PHESPV1169.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118266192;119778862 ERS1195337 ERX1510336 GENOMIC 366661569 2016-06-10 PHESPV1169 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439958/PHESPV1169.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439958/PHESPV1169.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439958 PHESPV1169 ERR1439967 PHESPV1178 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439967 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439967 a45f46019d4c4d3f3b93df7c03c899c8;bb307a5f735addd7647e4c6c3196e217 1313 97153863 f315e757755f2ceb81cf5aef4c2a034a;7331f29a012ec401ac93a35415ec84da SAMEA4024236 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439967/ERR1439967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439967/ERR1439967_2.fastq.gz 1124943 WGS PHESPV1178 RANDOM 64556472;66562365 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e9b297dcf0b5e93d46aafd810e0758bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439967/ERR1439967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439967/ERR1439967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439967/PHESPV1178.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439967/PHESPV1178.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439967/ERR1439967_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439967/ERR1439967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439967/PHESPV1178.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439967/PHESPV1178.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68415643;70410689 ERS1195346 ERX1510345 GENOMIC 223213353 2016-06-10 PHESPV1178 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439967/PHESPV1178.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439967/PHESPV1178.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439967 PHESPV1178 ERR1440068 PHESPV1279 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440068 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440068 502e9bd1433f24b49d01159bb4459633;eea10056d294409f6313f9f6d65fd415 1313 152671915 81a45fe2169999cfc4756a407a50880b;8e0546d680b9a76333d899ff2d097ad5 SAMEA4024337 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440068/ERR1440068_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440068/ERR1440068_2.fastq.gz 1722128 WGS PHESPV1279 RANDOM 99672852;105819647 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ede61a1b83cb4a8b490aa8f94ab3782 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440068/ERR1440068_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440068/ERR1440068_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440068/PHESPV1279.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440068/PHESPV1279.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440068/ERR1440068_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440068/ERR1440068_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440068/PHESPV1279.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440068/PHESPV1279.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105231788;111313961 ERS1195447 ERX1510446 GENOMIC 341430918 2016-06-10 PHESPV1279 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440068/PHESPV1279.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440068/PHESPV1279.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440068 PHESPV1279 ERR1440069 PHESPV1280 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440069 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440069 0c0f6499222fab457c3340743fd48bb2;892f0f046fca21b518536cf2bded6cad 1313 130736899 b8cbf35daa398380b01657b2269798f0;507e71d5ffb9b69a706989974ef2ce43 SAMEA4024338 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440069/ERR1440069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440069/ERR1440069_2.fastq.gz 1498940 WGS PHESPV1280 RANDOM 87030937;89792410 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30945bd5e9cdfde4cb14919269ff3026 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440069/ERR1440069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440069/ERR1440069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440069/PHESPV1280.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440069/PHESPV1280.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440069/ERR1440069_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440069/ERR1440069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440069/PHESPV1280.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440069/PHESPV1280.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91929151;94645529 ERS1195448 ERX1510447 GENOMIC 297616514 2016-06-10 PHESPV1280 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440069/PHESPV1280.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440069/PHESPV1280.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440069 PHESPV1280 ERR1440090 PHESPV1301 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440090 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440090 f928d547458eefb4ffff0b0b23b5da0e;9b1e3bfe40be6ec31c314901bec13d5f 1313 113854730 20974857a65a98c647ad0349d15514dd;0e7d8e52985c71a42f6ddaa6ca0ee52f SAMEA4024359 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440090/ERR1440090_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440090/ERR1440090_2.fastq.gz 1301881 WGS PHESPV1301 RANDOM 75723333;78274834 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 38c4d4dc437d4a0b3e055ec8076f36d2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440090/ERR1440090_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440090/ERR1440090_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440090/PHESPV1301.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440090/PHESPV1301.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440090/ERR1440090_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440090/ERR1440090_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440090/PHESPV1301.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440090/PHESPV1301.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80118117;82639848 ERS1195469 ERX1510468 GENOMIC 258505100 2016-06-10 PHESPV1301 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440090/PHESPV1301.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440090/PHESPV1301.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440090 PHESPV1301 ERR1440091 PHESPV1302 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440091 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440091 99380034c21674ebe235718acf0a8db3;49cd2b87ab7e8be67cbd55009bc03105 1313 118902929 64e206dc8bf25d334601515cbb12d111;4417da1dd30b03989f9f5042cf7907e2 SAMEA4024360 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440091/ERR1440091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440091/ERR1440091_2.fastq.gz 1362966 WGS PHESPV1302 RANDOM 78756103;82209874 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 24aff0a800b93ceb83f538711b3c3c72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440091/ERR1440091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440091/ERR1440091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440091/PHESPV1302.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440091/PHESPV1302.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440091/ERR1440091_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440091/ERR1440091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440091/PHESPV1302.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440091/PHESPV1302.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83304888;86720094 ERS1195470 ERX1510469 GENOMIC 270714558 2016-06-10 PHESPV1302 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440091/PHESPV1302.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440091/PHESPV1302.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440091 PHESPV1302 ERR1440133 PHESPV1346 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440133 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440133 5c45bbf97f42684dd41caffded72172e;f84723a758a898740692d1ed2b3102e3 1313 108610093 2df4fc74726f81c889b4356efd43bc6e;22f0ce7c4c2421b602eabded7d25a832 SAMEA4024402 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440133/ERR1440133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440133/ERR1440133_2.fastq.gz 1213219 WGS PHESPV1346 RANDOM 71865181;75129008 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ae7a4759d9abe872ab5dd6838442dfa ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440133/ERR1440133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440133/ERR1440133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440133/PHESPV1346.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440133/PHESPV1346.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440133/ERR1440133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440133/ERR1440133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440133/PHESPV1346.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440133/PHESPV1346.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76025748;79183499 ERS1195512 ERX1510511 GENOMIC 240640398 2016-06-10 PHESPV1346 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440133/PHESPV1346.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440133/PHESPV1346.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440133 PHESPV1346 ERR1440134 PHESPV1347 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440134 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440134 268bdd6419364f14c72a9282d21e8097;828ec758369e24ad3912277568060113 1313 134921981 dcc235f75c53f6e81e5d4b095d0224d3;83d54ea34ca1e158b0939a1628853127 SAMEA4024403 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440134/ERR1440134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440134/ERR1440134_2.fastq.gz 1512691 WGS PHESPV1347 RANDOM 89814930;92975176 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 34c3b7cbac668ec71545199bd84521e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440134/ERR1440134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440134/ERR1440134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440134/PHESPV1347.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440134/PHESPV1347.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440134/ERR1440134_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440134/ERR1440134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440134/PHESPV1347.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440134/PHESPV1347.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94888644;97936724 ERS1195513 ERX1510512 GENOMIC 300276920 2016-06-10 PHESPV1347 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440134/PHESPV1347.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440134/PHESPV1347.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440134 PHESPV1347 ERR1440145 PHESPV1358 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440145 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440145 77db859a1981a44ebb4471f339b91a20;75b6c191a187d095d98635d81caba781 1313 93790773 aa8bd6d6f0814dbda4b7a76d2d048ae5;4a4d49c1fbc26ba839e08b11acaed70c SAMEA4024414 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440145/ERR1440145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440145/ERR1440145_2.fastq.gz 1053639 WGS PHESPV1358 RANDOM 62360463;64823064 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d0e234908c1173bb5d5603c2356a78f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440145/ERR1440145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440145/ERR1440145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440145/PHESPV1358.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440145/PHESPV1358.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440145/ERR1440145_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440145/ERR1440145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440145/PHESPV1358.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440145/PHESPV1358.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66038971;68408442 ERS1195524 ERX1510523 GENOMIC 209116805 2016-06-10 PHESPV1358 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440145/PHESPV1358.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440145/PHESPV1358.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440145 PHESPV1358 ERR1440146 PHESPV1359 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440146 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440146 2c6b4f729068ea4fec0391011c54379e;edf3b6f325f7d95c7028fcc8eac113ee 1313 114880680 06841112422ff4838b4bded785588cf6;26b35781a87be2ec79afce956eccad2d SAMEA4024415 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440146/ERR1440146_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440146/ERR1440146_2.fastq.gz 1301647 WGS PHESPV1359 RANDOM 76374786;79372134 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d4631fada013d119ab94930f89ed67d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440146/ERR1440146_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440146/ERR1440146_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440146/PHESPV1359.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440146/PHESPV1359.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440146/ERR1440146_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440146/ERR1440146_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440146/PHESPV1359.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440146/PHESPV1359.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80803292;83699527 ERS1195525 ERX1510524 GENOMIC 258470258 2016-06-10 PHESPV1359 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440146/PHESPV1359.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440146/PHESPV1359.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440146 PHESPV1359 ERR1440163 PHESPV1376 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440163 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440163 fd76560a7df1781023bfcb647e079cfd;1f6b7e97087afd7904e2eb77180cad84 1313 149868063 08294110876ce09349fab401786b4140;9d67c0732c7c57b026c301aaa5ff5acf SAMEA4024432 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440163/ERR1440163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440163/ERR1440163_2.fastq.gz 1548365 WGS PHESPV1376 RANDOM 99224330;101021884 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b016921161cb20e945af1044892844fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440163/ERR1440163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440163/ERR1440163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440163/PHESPV1376.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440163/PHESPV1376.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440163/ERR1440163_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440163/ERR1440163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440163/PHESPV1376.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440163/PHESPV1376.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104355769;106092548 ERS1195542 ERX1510541 GENOMIC 305060504 2016-06-10 PHESPV1376 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440163/PHESPV1376.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440163/PHESPV1376.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440163 PHESPV1376 ERR1440433 PHESPV1648 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440433 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440433 56938c77be9f4a9ca876d674f03c3efc;c4aa3e36b501b34462fbb1d1a72596b0 1313 163999571 bcea829bba6ce5dcf89d99e67ae27987;7fd26091568cf6891019cb916251be34 SAMEA4024702 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440433/ERR1440433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440433/ERR1440433_2.fastq.gz 1778443 WGS PHESPV1648 RANDOM 115610386;121743450 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fa37923c98bc6cff292a68a277dc5e03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440433/ERR1440433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440433/ERR1440433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440433/PHESPV1648.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440433/PHESPV1648.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440433/ERR1440433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440433/ERR1440433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440433/PHESPV1648.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440433/PHESPV1648.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111026681;117110621 ERS1195812 ERX1510811 GENOMIC 346928075 2016-06-10 PHESPV1648 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440433/PHESPV1648.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440433/PHESPV1648.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440433 PHESPV1648 ERR1440435 PHESPV1650 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440435 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440435 60c8f3c944face2464a2ae543fa79370;ceefc2ecefe66ff2dd2f1e6e9577aa1f 1313 155167158 ee6aef07de04646343df6f28cd274635;536afe4acab769b1bbad75b2eab82382 SAMEA4024704 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440435/ERR1440435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440435/ERR1440435_2.fastq.gz 1672756 WGS PHESPV1650 RANDOM 107809763;116007492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54b9075d06907e91a5f081590374b667 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440435/ERR1440435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440435/ERR1440435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440435/PHESPV1650.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440435/PHESPV1650.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440435/ERR1440435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440435/ERR1440435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440435/PHESPV1650.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440435/PHESPV1650.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103512214;111636396 ERS1195814 ERX1510813 GENOMIC 325188652 2016-06-10 PHESPV1650 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440435/PHESPV1650.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440435/PHESPV1650.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440435 PHESPV1650 ERR1440591 PHESPV1806 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440591 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440591 ef3ce84125497b2fff487918ed35ed35;a91e1d68346dda13b9e852a4312a4f46 1313 176833250 4281f2854cd7bfcd204fe90aa6655ea2;009b19245ebaa59127d9ad3df93ad824 SAMEA4024860 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440591/ERR1440591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440591/ERR1440591_2.fastq.gz 1931753 WGS PHESPV1806 RANDOM 126191491;130365055 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ae83e9896fb51eb8e255c03558e9a618 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440591/ERR1440591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440591/ERR1440591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440591/PHESPV1806.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440591/PHESPV1806.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440591/ERR1440591_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440591/ERR1440591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440591/PHESPV1806.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440591/PHESPV1806.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121171641;125327406 ERS1195970 ERX1510969 GENOMIC 379474165 2016-06-10 PHESPV1806 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440591/PHESPV1806.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440591/PHESPV1806.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440591 PHESPV1806 ERR1440594 PHESPV1809 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440594 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440594 fc568a0727371d796120f421d11b5802;7e2acfd21846ccfa95b871d485e45dd8 1313 192206900 f1ba171500d526cf0a3c0e1e39a7a8a8;f92326f31db5f0dd272dd740107db92b SAMEA4024863 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440594/ERR1440594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440594/ERR1440594_2.fastq.gz 1984158 WGS PHESPV1809 RANDOM 135666409;139718325 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 32633440527e782824161eeddae655ba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440594/ERR1440594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440594/ERR1440594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440594/PHESPV1809.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440594/PHESPV1809.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440594/ERR1440594_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440594/ERR1440594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440594/PHESPV1809.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440594/PHESPV1809.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130572386;134620831 ERS1195973 ERX1510972 GENOMIC 383775772 2016-06-10 PHESPV1809 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440594/PHESPV1809.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440594/PHESPV1809.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440594 PHESPV1809 ERR1440643 PHESPV1858 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440643 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440643 5c690e7c16666144275c79f8beaaccf6;76ed7514981e66bb1fc790f4e66cb6f2 1313 123945064 9bd6758bdb74fc924384f32c977ca08b;023a99fb9f7a694cb79a45e5753dee08 SAMEA4024912 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440643/ERR1440643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440643/ERR1440643_2.fastq.gz 1394855 WGS PHESPV1858 RANDOM 88115294;92214955 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 575b93c0f75d6d73ae0f4738d39b789b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440643/ERR1440643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440643/ERR1440643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440643/PHESPV1858.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440643/PHESPV1858.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440643/ERR1440643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440643/ERR1440643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440643/PHESPV1858.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440643/PHESPV1858.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84621271;88667964 ERS1196022 ERX1511021 GENOMIC 274144679 2016-06-10 PHESPV1858 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440643/PHESPV1858.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440643/PHESPV1858.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440643 PHESPV1858 ERR1440642 PHESPV1857 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440642 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440642 21f86aed3653075c4c59c3caf9877e93;8358844c88d5fecb4411adf2a7ba5a71 1313 143047710 933c5f1d3342f9142d3ad3d0ff05dbd1;f2858c372f03f5177fd419ae40a11c35 SAMEA4024911 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440642/ERR1440642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440642/ERR1440642_2.fastq.gz 1617506 WGS PHESPV1857 RANDOM 101981852;106232651 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 59c7a550349705c4208790355dd77afa ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440642/ERR1440642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440642/ERR1440642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440642/PHESPV1857.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440642/PHESPV1857.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440642/ERR1440642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440642/ERR1440642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440642/PHESPV1857.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440642/PHESPV1857.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97785806;101977727 ERS1196021 ERX1511020 GENOMIC 316626538 2016-06-10 PHESPV1857 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440642/PHESPV1857.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440642/PHESPV1857.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440642 PHESPV1857 ERR1440645 PHESPV1860 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440645 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440645 4df5726668e62e825ceb8ab9c9006627;7a2b26dc2325af621fef86068bbcbe07 1313 110543427 96f1fb3e2d0c38bcaf465fef12de1ef2;772427745fd1676fd3879fc65247284f SAMEA4024914 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440645/ERR1440645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440645/ERR1440645_2.fastq.gz 1244119 WGS PHESPV1860 RANDOM 78207940;82551910 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad348b89d0252ecf15d2d6881d311a28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440645/ERR1440645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440645/ERR1440645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440645/PHESPV1860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440645/PHESPV1860.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440645/ERR1440645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440645/ERR1440645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440645/PHESPV1860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440645/PHESPV1860.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75076326;79365864 ERS1196024 ERX1511023 GENOMIC 243987694 2016-06-10 PHESPV1860 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440645/PHESPV1860.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440645/PHESPV1860.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440645 PHESPV1860 ERR1440669 PHESPV1884 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440669 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440669 8d3fed2a0cc259af6708571964bfe2d7;352059d7bc952a960b32a9773f74142d 1313 132622071 d05ebf35d9d4456203370c95deb23162;d5c30b19a64c6adc78c45aeb9f92bb0e SAMEA4024938 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440669/ERR1440669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440669/ERR1440669_2.fastq.gz 1439265 WGS PHESPV1884 RANDOM 94496085;94699194 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b5b61e7cb89840dbe8ddaf07f3b6bd4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440669/ERR1440669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440669/ERR1440669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440669/PHESPV1884.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440669/PHESPV1884.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440669/ERR1440669_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440669/ERR1440669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440669/PHESPV1884.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440669/PHESPV1884.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90746347;90950366 ERS1196048 ERX1511047 GENOMIC 277101420 2016-06-10 PHESPV1884 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440669/PHESPV1884.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440669/PHESPV1884.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440669 PHESPV1884 ERR1440644 PHESPV1859 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440644 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440644 0d9b911724429306ff281b62150f86bb;37daa3a9ab42f0aaf9ec39bc2368c77c 1313 113242722 a236cd9b9461861dc754a0976f01eeea;5c4824cbde941d9cc2237341387ccdb6 SAMEA4024913 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440644/ERR1440644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440644/ERR1440644_2.fastq.gz 1265298 WGS PHESPV1859 RANDOM 79384881;84777674 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 775add610baa6d0cc132e06da18213a3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440644/ERR1440644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440644/ERR1440644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440644/PHESPV1859.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440644/PHESPV1859.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440644/ERR1440644_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440644/ERR1440644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440644/PHESPV1859.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440644/PHESPV1859.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76204741;81535718 ERS1196023 ERX1511022 GENOMIC 247611182 2016-06-10 PHESPV1859 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440644/PHESPV1859.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440644/PHESPV1859.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440644 PHESPV1859 ERR1440648 PHESPV1863 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440648 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440648 1975abd4bc373c96b610d23fd7627eda;9d1fa376742bd8c7bef1ffde0c5c4600 1313 127081038 bea1606d21cdeba47fbc9923497530a7;c47af96651dcbf5ff55ccaf7f0c07c46 SAMEA4024917 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440648/ERR1440648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440648/ERR1440648_2.fastq.gz 1454943 WGS PHESPV1863 RANDOM 90968697;94505989 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4077f1cd5fdab41491407d188a670b94 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440648/ERR1440648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440648/ERR1440648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440648/PHESPV1863.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440648/PHESPV1863.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440648/ERR1440648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440648/ERR1440648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440648/PHESPV1863.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440648/PHESPV1863.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87296641;90784082 ERS1196027 ERX1511026 GENOMIC 285162715 2016-06-10 PHESPV1863 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440648/PHESPV1863.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440648/PHESPV1863.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440648 PHESPV1863 ERR1440647 PHESPV1862 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440647 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440647 fc28b41a41d2f30f4730327acbb44ac2;c5af3befd9c59f0d00073c0d009ab619 1313 76492746 dae9f4947c9da9d4d90e9a3c60bc6f1a;718336672d1fafd1667cd6917bc27fb9 SAMEA4024916 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440647/ERR1440647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440647/ERR1440647_2.fastq.gz 861046 WGS PHESPV1862 RANDOM 54401465;57106265 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c72a99d28a297f5f08b5b96cb171bbd1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440647/ERR1440647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440647/ERR1440647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440647/PHESPV1862.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440647/PHESPV1862.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440647/ERR1440647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440647/ERR1440647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440647/PHESPV1862.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440647/PHESPV1862.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52266741;54929190 ERS1196026 ERX1511025 GENOMIC 169295598 2016-06-10 PHESPV1862 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440647/PHESPV1862.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440647/PHESPV1862.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440647 PHESPV1862 ERR1440670 PHESPV1885 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440670 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440670 6a5d7d9b00ba20cf3c76843a4e1ef604;2fd487ba0ca02681c2cb919efeea8af8 1313 117075083 fb2b7576ab06b3722221994422db0ac9;b9c59a40af533aa07fb9ee03fdb2436b SAMEA4024939 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440670/ERR1440670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440670/ERR1440670_2.fastq.gz 1273148 WGS PHESPV1885 RANDOM 83734804;83759680 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 556c9001a038242965ba6e93054080da ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440670/ERR1440670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440670/ERR1440670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440670/PHESPV1885.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440670/PHESPV1885.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440670/ERR1440670_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440670/ERR1440670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440670/PHESPV1885.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440670/PHESPV1885.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80427902;80454971 ERS1196049 ERX1511048 GENOMIC 247264664 2016-06-10 PHESPV1885 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440670/PHESPV1885.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440670/PHESPV1885.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440670 PHESPV1885 ERR1440671 PHESPV1886 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440671 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440671 82fa9d78367e4cfaaac383fabfbd772e;2a1ad4e710f8197abd5e265c43eccd4b 1313 157694939 754f17ec66eb45abd4b61d065bc8b115;a25d250c9901c23c2960d8aa7353dd5f SAMEA4024940 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440671/ERR1440671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440671/ERR1440671_2.fastq.gz 1689266 WGS PHESPV1886 RANDOM 111838223;113031840 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 83a5c0b83855be0d41c4f8f27940f8ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440671/ERR1440671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440671/ERR1440671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440671/PHESPV1886.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440671/PHESPV1886.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440671/ERR1440671_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440671/ERR1440671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440671/PHESPV1886.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440671/PHESPV1886.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107384183;108573511 ERS1196050 ERX1511049 GENOMIC 329241196 2016-06-10 PHESPV1886 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440671/PHESPV1886.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440671/PHESPV1886.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440671 PHESPV1886 ERR1440672 PHESPV1887 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440672 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440672 73c6ba8a1bc2a555378eef467b10562d;7b751a27951313af60bf5daadb6b0ebc 1313 112053758 f593cf3465d5df94b9a9379dc20f7048;3089b7454c8e7e596e63dc92ab20d980 SAMEA4024941 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440672/ERR1440672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440672/ERR1440672_2.fastq.gz 1201169 WGS PHESPV1887 RANDOM 79871396;80140921 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab16d47d94e4df8066661297ca4a2a57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440672/ERR1440672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440672/ERR1440672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440672/PHESPV1887.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440672/PHESPV1887.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440672/ERR1440672_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440672/ERR1440672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440672/PHESPV1887.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440672/PHESPV1887.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76766677;77028754 ERS1196051 ERX1511050 GENOMIC 234158643 2016-06-10 PHESPV1887 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440672/PHESPV1887.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440672/PHESPV1887.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440672 PHESPV1887 ERR1440675 PHESPV1890 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440675 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440675 52eae76ee4d3b9282cbbfff36cfbdde0;caf8b12154651e297c4892da0262eed2 1313 132098770 fa770970281961f5d5b7682b8b50b39e;c4c7c881b1132ff2d1b9a8a6e97cee93 SAMEA4024944 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440675/ERR1440675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440675/ERR1440675_2.fastq.gz 1416299 WGS PHESPV1890 RANDOM 93914691;94509993 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b9d413ffd5f336ab0d1ef9412dd3f9a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440675/ERR1440675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440675/ERR1440675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440675/PHESPV1890.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440675/PHESPV1890.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440675/ERR1440675_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440675/ERR1440675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440675/PHESPV1890.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440675/PHESPV1890.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90265718;90855038 ERS1196054 ERX1511053 GENOMIC 276365443 2016-06-10 PHESPV1890 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440675/PHESPV1890.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440675/PHESPV1890.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440675 PHESPV1890 ERR1440674 PHESPV1889 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440674 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440674 127e3bb086417974ba00b9a1d2fc2321;dad82b3b85eee500330507a2f7b91fdd 1313 112627449 f31a798f68b6dd1af243487c22d85fb8;69eb5a0358800825c028641b4bb7865e SAMEA4024943 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440674/ERR1440674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440674/ERR1440674_2.fastq.gz 1205087 WGS PHESPV1889 RANDOM 80331036;80302109 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a1c0670b57201319977734ac5ac1443 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440674/ERR1440674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440674/ERR1440674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440674/PHESPV1889.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440674/PHESPV1889.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440674/ERR1440674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440674/ERR1440674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440674/PHESPV1889.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440674/PHESPV1889.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77237249;77201348 ERS1196053 ERX1511052 GENOMIC 234532053 2016-06-10 PHESPV1889 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440674/PHESPV1889.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440674/PHESPV1889.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440674 PHESPV1889 ERR1440690 PHESPV1905 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440690 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440690 103263177907c713d623e34d3fb97ebf;867ab701a8dd3206271313ea9ccac947 1313 103923770 41fa05093b5d88c75a613dac3fad742e;c6febe6b5322289624fa08def99b68be SAMEA4024959 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440690/ERR1440690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440690/ERR1440690_2.fastq.gz 1108056 WGS PHESPV1905 RANDOM 74119584;74047315 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e72f3f4f36a038c6a89f7792b5518b01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440690/ERR1440690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440690/ERR1440690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440690/PHESPV1905.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440690/PHESPV1905.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440690/ERR1440690_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440690/ERR1440690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440690/PHESPV1905.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440690/PHESPV1905.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71270338;71192113 ERS1196069 ERX1511068 GENOMIC 216015768 2016-06-10 PHESPV1905 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440690/PHESPV1905.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440690/PHESPV1905.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440690 PHESPV1905 ERR1440687 PHESPV1902 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440687 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440687 535f532a344ec0bc869aa1dd114deac9;b0560e4bffb8faebf1ff97b9820ec4d0 1313 120808926 301d4016a31c452e89e2372872d339a4;e65f335f7e8a7465d84a78443473d6f5 SAMEA4024956 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440687/ERR1440687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440687/ERR1440687_2.fastq.gz 1298082 WGS PHESPV1902 RANDOM 85968175;86357386 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e81940ac21135bc9ba0fb97a43cafbe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440687/ERR1440687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440687/ERR1440687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440687/PHESPV1902.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440687/PHESPV1902.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440687/ERR1440687_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440687/ERR1440687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440687/PHESPV1902.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440687/PHESPV1902.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82627525;83011485 ERS1196066 ERX1511065 GENOMIC 253092353 2016-06-10 PHESPV1902 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440687/PHESPV1902.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440687/PHESPV1902.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440687 PHESPV1902 ERR1440691 PHESPV1906 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440691 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440691 80fe37fe5c70a6683fac6bc93ae7cc91;030d90b8ff2d65e54f29f3e91cbfd05a 1313 107807189 71015ec0bf117f94ed70a5263a32811a;8acbbfaf3b7316fa9d4ac3b515be4ffa SAMEA4024960 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440691/ERR1440691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440691/ERR1440691_2.fastq.gz 1160536 WGS PHESPV1906 RANDOM 76912364;77077937 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b6ee3c71645b3ea1e48751fd6a08999 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440691/ERR1440691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440691/ERR1440691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440691/PHESPV1906.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440691/PHESPV1906.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440691/ERR1440691_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440691/ERR1440691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440691/PHESPV1906.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440691/PHESPV1906.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73919109;74081503 ERS1196070 ERX1511069 GENOMIC 225803404 2016-06-10 PHESPV1906 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440691/PHESPV1906.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440691/PHESPV1906.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440691 PHESPV1906 ERR1440707 PHESPV1922 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440707 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440707 2e50b6cb06ab7633afc72943a55ff643;40687c3032b1aec8a8d358104348cc12 1313 122137952 da0404f7bdc906c31a69d8e2b17a6a5d;721b986b4d784d1442e896e1b965644f SAMEA4024976 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440707/ERR1440707_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440707/ERR1440707_2.fastq.gz 1329123 WGS PHESPV1922 RANDOM 87377887;87423256 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dd58e3db8bc7022ac399d9a606c5b1b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440707/ERR1440707_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440707/ERR1440707_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440707/PHESPV1922.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440707/PHESPV1922.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440707/ERR1440707_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440707/ERR1440707_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440707/PHESPV1922.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440707/PHESPV1922.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83914908;83958625 ERS1196086 ERX1511085 GENOMIC 258263778 2016-06-10 PHESPV1922 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440707/PHESPV1922.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440707/PHESPV1922.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440707 PHESPV1922 ERR1440710 PHESPV1925 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440710 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440710 54c256d064b89b1c3a4ff794433e67bb;d149dbb74bd01683f0ec727ab9ffcd52 1313 152574851 7258b44c4d068a69bbd43246b837915e;e4d66d3ddeb71d997abfd1a48ac5b252 SAMEA4024979 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440710/ERR1440710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440710/ERR1440710_2.fastq.gz 1623833 WGS PHESPV1925 RANDOM 107985446;109217197 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 16eadaae913fccb78f6867f69eff2f30 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440710/ERR1440710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440710/ERR1440710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440710/PHESPV1925.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440710/PHESPV1925.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440710/ERR1440710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440710/ERR1440710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440710/PHESPV1925.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440710/PHESPV1925.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103697106;104921421 ERS1196089 ERX1511088 GENOMIC 316411493 2016-06-10 PHESPV1925 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440710/PHESPV1925.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440710/PHESPV1925.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440710 PHESPV1925 ERR1440712 PHESPV1927 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440712 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440712 28bba932880e6a5e35b1c07f44440891;a74b36438485cea4325e4e9aa3b84118 1313 103603922 0b445b87943d51ae3c4c6f1fd26def2a;47a01fedac0899a179ef4a1271cf6b98 SAMEA4024981 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440712/ERR1440712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440712/ERR1440712_2.fastq.gz 1099921 WGS PHESPV1927 RANDOM 72949550;74440860 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c3c9cb0b27606f5df8b0c5e03bb463e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440712/ERR1440712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440712/ERR1440712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440712/PHESPV1927.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440712/PHESPV1927.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440712/ERR1440712_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440712/ERR1440712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440712/PHESPV1927.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440712/PHESPV1927.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70141278;71623467 ERS1196091 ERX1511090 GENOMIC 213609002 2016-06-10 PHESPV1927 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440712/PHESPV1927.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440712/PHESPV1927.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440712 PHESPV1927 ERR1440711 PHESPV1926 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440711 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440711 970ebf221e9298ab1d32bf1854e3b398;3c589d4d958b25de55c034f6032465ca 1313 123529200 6cb322c29333a66987d47b51db54034f;71dc57de18964a4255f617d8e27c3612 SAMEA4024980 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440711/ERR1440711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440711/ERR1440711_2.fastq.gz 1317975 WGS PHESPV1926 RANDOM 87643148;88412988 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7312e11a79598c6c6da5da534caeb8ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440711/ERR1440711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440711/ERR1440711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440711/PHESPV1926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440711/PHESPV1926.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440711/ERR1440711_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440711/ERR1440711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440711/PHESPV1926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440711/PHESPV1926.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84241452;85004448 ERS1196090 ERX1511089 GENOMIC 256660921 2016-06-10 PHESPV1926 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440711/PHESPV1926.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440711/PHESPV1926.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440711 PHESPV1926 ERR1440715 PHESPV1930 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440715 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440715 0289febde3fd24ec4f944804c3c9a6f6;e9f037c3f4eb1740a0b59d06cb9feffe 1313 140346345 0dcd849e4f7042338612216eb27221f0;971f3a4e1dfc34f3b20a16db9d2743b6 SAMEA4024984 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440715/ERR1440715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440715/ERR1440715_2.fastq.gz 1490906 WGS PHESPV1930 RANDOM 98878005;100825321 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62033fe08bb0a120783d17393ff53480 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440715/ERR1440715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440715/ERR1440715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440715/PHESPV1930.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440715/PHESPV1930.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440715/ERR1440715_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440715/ERR1440715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440715/PHESPV1930.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440715/PHESPV1930.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94974712;96908657 ERS1196094 ERX1511093 GENOMIC 290355000 2016-06-10 PHESPV1930 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440715/PHESPV1930.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440715/PHESPV1930.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440715 PHESPV1930 ERR1440713 PHESPV1928 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440713 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440713 0849ed37b03c3aab4bed7a8e00a84d96;b3a30925df9f5baabea97029bf84e828 1313 130433642 4f9cd2bc7c61b1ab8a65b4a098d56074;e9ed6e57fbcfe2901a1284692aa29577 SAMEA4024982 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440713/ERR1440713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440713/ERR1440713_2.fastq.gz 1416062 WGS PHESPV1928 RANDOM 93331664;93177418 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9a269f9ac325694550779ecf5e5d1c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440713/ERR1440713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440713/ERR1440713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440713/PHESPV1928.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440713/PHESPV1928.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440713/ERR1440713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440713/ERR1440713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440713/PHESPV1928.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440713/PHESPV1928.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89661040;89507332 ERS1196092 ERX1511091 GENOMIC 274810935 2016-06-10 PHESPV1928 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440713/PHESPV1928.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440713/PHESPV1928.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440713 PHESPV1928 ERR1440714 PHESPV1929 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440714 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440714 7fbff6f0be727669d11dd2b75ab09971;6809e349a27e2c38db34dd5ed8f4c435 1313 136061393 a22dfb5f97e60918e3e269e5cd881919;fb0f094e00031501227ca17c569cd3a9 SAMEA4024983 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440714/ERR1440714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440714/ERR1440714_2.fastq.gz 1444802 WGS PHESPV1929 RANDOM 96575887;97001247 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 501cea3e2d203a934a6309e49d49faba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440714/ERR1440714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440714/ERR1440714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440714/PHESPV1929.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440714/PHESPV1929.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440714/ERR1440714_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440714/ERR1440714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440714/PHESPV1929.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440714/PHESPV1929.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92817028;93237212 ERS1196093 ERX1511092 GENOMIC 280920606 2016-06-10 PHESPV1929 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440714/PHESPV1929.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440714/PHESPV1929.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440714 PHESPV1929 ERR1440716 PHESPV1931 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440716 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440716 1d74041b31e297211e0de0f9938bf308;8ccdbd86b27d43855a76a4a47c0c43ba 1313 138925815 d950d3cdc0de10e152373a2deeaed4e1;1c454e0cf33741bc9b61cb59592cc899 SAMEA4024985 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440716/ERR1440716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440716/ERR1440716_2.fastq.gz 1487663 WGS PHESPV1931 RANDOM 99077818;99132759 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b25d0b9f85825a7f979349c2aeda2cc2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440716/ERR1440716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440716/ERR1440716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440716/PHESPV1931.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440716/PHESPV1931.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440716/ERR1440716_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440716/ERR1440716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440716/PHESPV1931.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440716/PHESPV1931.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95183105;95234358 ERS1196095 ERX1511094 GENOMIC 290000810 2016-06-10 PHESPV1931 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440716/PHESPV1931.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440716/PHESPV1931.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440716 PHESPV1931 ERR1440718 PHESPV1933 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440718 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440718 ce328b15797a1c2376401895d03efd18;a966d1ed2e3d2af648f57d75f6a74db2 1313 124080680 8a8f4677a0480a526c1e8741a5e97643;0318e10cc21c0cdc46691c30f1b31282 SAMEA4024987 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440718/ERR1440718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440718/ERR1440718_2.fastq.gz 1338478 WGS PHESPV1933 RANDOM 88651443;88703064 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7dd9d84459e68b540b93916e4a56382e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440718/ERR1440718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440718/ERR1440718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440718/PHESPV1933.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440718/PHESPV1933.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440718/ERR1440718_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440718/ERR1440718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440718/PHESPV1933.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440718/PHESPV1933.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85154845;85207686 ERS1196097 ERX1511096 GENOMIC 260288033 2016-06-10 PHESPV1933 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440718/PHESPV1933.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440718/PHESPV1933.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440718 PHESPV1933 ERR1440719 PHESPV1934 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440719 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440719 618ed48512ba0e6076d2e768a9c83247;92397202a881c7a4cc93d4a25a88393d 1313 135128426 fc5aca2dbf6525a33989116dd22206cf;760ccd490138cd817118dfd31cf42fcb SAMEA4024988 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440719/ERR1440719_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440719/ERR1440719_2.fastq.gz 1439136 WGS PHESPV1934 RANDOM 95620968;96859854 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30fdc0b1b74c6de2db87e3b81c8defcd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440719/ERR1440719_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440719/ERR1440719_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440719/PHESPV1934.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440719/PHESPV1934.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440719/ERR1440719_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440719/ERR1440719_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440719/PHESPV1934.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440719/PHESPV1934.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91858354;93088515 ERS1196098 ERX1511097 GENOMIC 280413502 2016-06-10 PHESPV1934 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440719/PHESPV1934.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440719/PHESPV1934.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440719 PHESPV1934 ERR1440727 PHESPV1942 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440727 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440727 1834a62d761c72fc9fd447b0ab6aafae;36e8f64d6144408fe20a0ddd032e1bd7 1313 140303559 c9cf96396f2573368c3ceb7013953717;4c10c33c0b2924c602025ab7a2c4ee51 SAMEA4024996 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440727/ERR1440727_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440727/ERR1440727_2.fastq.gz 1571617 WGS PHESPV1942 RANDOM 101473860;103023559 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 060ce5509b4d3be07b93be305ea57d81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440727/ERR1440727_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440727/ERR1440727_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440727/PHESPV1942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440727/PHESPV1942.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440727/ERR1440727_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440727/ERR1440727_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440727/PHESPV1942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440727/PHESPV1942.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97399931;98941676 ERS1196106 ERX1511105 GENOMIC 308721304 2016-06-10 PHESPV1942 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440727/PHESPV1942.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440727/PHESPV1942.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440727 PHESPV1942 ERR1440729 PHESPV1944 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440729 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440729 6afce7fe1239d4832d03a6e7a7c2f08f;d143674d9a6739bc53cb19456bc28001 1313 121700173 c4b91617688000de1eeea344e63ccef9;78eab69ddbd428eb065b4a49851df4c5 SAMEA4024998 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440729/ERR1440729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440729/ERR1440729_2.fastq.gz 1364817 WGS PHESPV1944 RANDOM 87940260;89447705 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 12b9e4666483d2ebae0a5edb5128de77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440729/ERR1440729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440729/ERR1440729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440729/PHESPV1944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440729/PHESPV1944.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440729/ERR1440729_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440729/ERR1440729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440729/PHESPV1944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440729/PHESPV1944.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84518093;86015904 ERS1196108 ERX1511107 GENOMIC 268303523 2016-06-10 PHESPV1944 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440729/PHESPV1944.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440729/PHESPV1944.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440729 PHESPV1944 ERR1440731 PHESPV1946 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440731 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440731 188a485faacb5dc04a5460f07bde00ce;fe09ee5339df490119a3f2e7eb36d2ec 1313 159098402 4178bf77950bceefab2da2468d857243;32cd2444991de206d30196196e1740a2 SAMEA4025000 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440731/ERR1440731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440731/ERR1440731_2.fastq.gz 1771252 WGS PHESPV1946 RANDOM 114009331;117318453 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 146c9b1b5a7a77bafe2b9f5798aa0031 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440731/ERR1440731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440731/ERR1440731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440731/PHESPV1946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440731/PHESPV1946.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440731/ERR1440731_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440731/ERR1440731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440731/PHESPV1946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440731/PHESPV1946.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109325925;112620576 ERS1196110 ERX1511109 GENOMIC 347050751 2016-06-10 PHESPV1946 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440731/PHESPV1946.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440731/PHESPV1946.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440731 PHESPV1946 ERR1440734 PHESPV1949 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440734 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440734 111376866e1319f55b10db5fc8cf078b;55a24a3d58cc70219d05907545adb568 1313 136548434 3478ea590548f37d2b536918d2daf85f;24a48fcf35ba5f622a90307946ded38f SAMEA4025003 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440734/ERR1440734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440734/ERR1440734_2.fastq.gz 1529008 WGS PHESPV1949 RANDOM 99110162;100031019 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e0d9ee2a61731fd5d591b01ef01a88c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440734/ERR1440734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440734/ERR1440734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440734/PHESPV1949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440734/PHESPV1949.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440734/ERR1440734_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440734/ERR1440734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440734/PHESPV1949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440734/PHESPV1949.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95171456;96090802 ERS1196113 ERX1511112 GENOMIC 300914405 2016-06-10 PHESPV1949 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440734/PHESPV1949.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440734/PHESPV1949.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440734 PHESPV1949 ERR1440735 PHESPV1950 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440735 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440735 d3363055f53b4bdaaf141479bad112a7;e9846d1e7786e7425b8e0ce0854380b7 1313 136617768 8409bcb31e22d69eeb3bb10d41a98600;3965bc56c51b8c97da5ab15c835a6e7c SAMEA4025004 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440735/ERR1440735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440735/ERR1440735_2.fastq.gz 1534132 WGS PHESPV1950 RANDOM 99208201;100045415 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8bc977740af360545c8c2454f1af3f04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440735/ERR1440735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440735/ERR1440735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440735/PHESPV1950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440735/PHESPV1950.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440735/ERR1440735_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440735/ERR1440735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440735/PHESPV1950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440735/PHESPV1950.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95277843;96112403 ERS1196114 ERX1511113 GENOMIC 301153875 2016-06-10 PHESPV1950 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440735/PHESPV1950.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440735/PHESPV1950.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440735 PHESPV1950 ERR1440739 PHESPV1954 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440739 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440739 079f92b9e2da4d76858beb12b04d66d7;8f2432be0e93c7773f0953172c2a2c5d 1313 159631938 1e6c1d9b6c817dceb0f010881425c2cc;2af79ce96cae25441a8708d5bfd15849 SAMEA4025008 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440739/ERR1440739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440739/ERR1440739_2.fastq.gz 1802346 WGS PHESPV1954 RANDOM 115409092;116920861 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2e617afcb679198b0153a22ac9bdf954 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440739/ERR1440739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440739/ERR1440739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440739/PHESPV1954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440739/PHESPV1954.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440739/ERR1440739_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440739/ERR1440739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440739/PHESPV1954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440739/PHESPV1954.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110677248;112187002 ERS1196118 ERX1511117 GENOMIC 349461355 2016-06-10 PHESPV1954 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440739/PHESPV1954.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440739/PHESPV1954.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440739 PHESPV1954 ERR1440741 PHESPV1956 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440741 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440741 3975cd37a72b7ae5f6f8a2c9d1335dc0;96969833f8b7338986ea9624e89222fe 1313 114401604 3eb5fac036ef4306af7d423a7ec02db9;b219de3ef4c47be92d3ece0c579ebfd3 SAMEA4025010 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440741/ERR1440741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440741/ERR1440741_2.fastq.gz 1259621 WGS PHESPV1956 RANDOM 81276684;84679526 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 733899024b9c0c436e7365ff1b4a5d9b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440741/ERR1440741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440741/ERR1440741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440741/PHESPV1956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440741/PHESPV1956.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440741/ERR1440741_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440741/ERR1440741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440741/PHESPV1956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440741/PHESPV1956.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78101180;81478280 ERS1196120 ERX1511119 GENOMIC 247221615 2016-06-10 PHESPV1956 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440741/PHESPV1956.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440741/PHESPV1956.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440741 PHESPV1956 ERR1440742 PHESPV1957 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440742 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440742 407f202332e6d663378a405292833c4b;4a10d1512045101429d5c1aac9b979d4 1313 139829767 6b9a57b112352fc776942e69e0b820a9;2dd3774696b2cf9b55f5c02bb9aa22a7 SAMEA4025011 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440742/ERR1440742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440742/ERR1440742_2.fastq.gz 1590285 WGS PHESPV1957 RANDOM 101589241;102371477 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2b002f4a619a52dd9576d1de98b3b464 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440742/ERR1440742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440742/ERR1440742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440742/PHESPV1957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440742/PHESPV1957.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440742/ERR1440742_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440742/ERR1440742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440742/PHESPV1957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440742/PHESPV1957.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97468262;98249269 ERS1196121 ERX1511120 GENOMIC 308767590 2016-06-10 PHESPV1957 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440742/PHESPV1957.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440742/PHESPV1957.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440742 PHESPV1957 ERR1440746 PHESPV1961 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440746 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440746 dca3494e3849a1d921c333151a472981;68871d55bc6a4d56f666d7cf1ebb5cbb 1313 122151211 4352bcca1b25f083df2dd241b9335197;f616d7c8a6a8b3e4ab4683ce37d17628 SAMEA4025015 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440746/ERR1440746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440746/ERR1440746_2.fastq.gz 1352297 WGS PHESPV1961 RANDOM 87051585;90199231 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eb46df027cb99453203fe28fba6a2f4e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440746/ERR1440746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440746/ERR1440746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440746/PHESPV1961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440746/PHESPV1961.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440746/ERR1440746_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440746/ERR1440746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440746/PHESPV1961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440746/PHESPV1961.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83646337;86776854 ERS1196125 ERX1511124 GENOMIC 264656757 2016-06-10 PHESPV1961 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440746/PHESPV1961.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440746/PHESPV1961.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440746 PHESPV1961 ERR1440747 PHESPV1962 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440747 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440747 2642df764b894fbd583b36d96c6d9015;eaad28e8545ce1d9cdc3de74dc777440 1313 143812135 b52c9a0cb9e175c844d04520a5656825;fb5402bae245ccfe90399665f9206912 SAMEA4025016 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440747/ERR1440747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440747/ERR1440747_2.fastq.gz 1627550 WGS PHESPV1962 RANDOM 104457848;105379474 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f7c5781b81d11934f9d37d068a7a6451 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440747/ERR1440747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440747/ERR1440747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440747/PHESPV1962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440747/PHESPV1962.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440747/ERR1440747_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440747/ERR1440747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440747/PHESPV1962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440747/PHESPV1962.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100241391;101160039 ERS1196126 ERX1511125 GENOMIC 318089319 2016-06-10 PHESPV1962 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440747/PHESPV1962.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440747/PHESPV1962.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440747 PHESPV1962 ERR1440750 PHESPV1965 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440750 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440750 02dbdbe5c3213e02be03aa28318d3882;2e78b741288da2746e9eac1cf69a2ca5 1313 140982768 a67bd0c0210f2aaf00547e8e8a8a008f;290abbc884f60a69e95a312a763b2f81 SAMEA4025019 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440750/ERR1440750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440750/ERR1440750_2.fastq.gz 1583238 WGS PHESPV1965 RANDOM 102237439;103155697 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 424336a87352b0523804f5b7a38e0c03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440750/ERR1440750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440750/ERR1440750_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440750/PHESPV1965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440750/PHESPV1965.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440750/ERR1440750_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440750/ERR1440750_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440750/PHESPV1965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440750/PHESPV1965.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98146616;99060093 ERS1196129 ERX1511128 GENOMIC 309805248 2016-06-10 PHESPV1965 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440750/PHESPV1965.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440750/PHESPV1965.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440750 PHESPV1965 ERR1440749 PHESPV1964 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440749 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440749 9ab890c5c3288f85d240cf6d7e016ad8;49b03de2832bd7b8ec6b252496e7abc8 1313 151610227 9a02bd2919592fae39672edd6e97d00f;37da4a41e92711f99c1b92d3d97c3af5 SAMEA4025018 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440749/ERR1440749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440749/ERR1440749_2.fastq.gz 1725376 WGS PHESPV1964 RANDOM 109112200;111270441 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f637f4d979741a0d036bed2e7b09d833 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440749/ERR1440749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440749/ERR1440749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440749/PHESPV1964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440749/PHESPV1964.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440749/ERR1440749_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440749/ERR1440749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440749/PHESPV1964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440749/PHESPV1964.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104548703;106704651 ERS1196128 ERX1511127 GENOMIC 328925650 2016-06-10 PHESPV1964 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440749/PHESPV1964.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440749/PHESPV1964.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440749 PHESPV1964 ERR1440754 PHESPV1969 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440754 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440754 7130b8a7e50b1467a47b9779ae9cb484;c0241c84ac9eab953d2792da4da799a7 1313 145197241 64ab45e6c69e9ce301671378ff0ca911;fbc5b1d3012f934b9c994cd7e3cd2d8b SAMEA4025023 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440754/ERR1440754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440754/ERR1440754_2.fastq.gz 1627393 WGS PHESPV1969 RANDOM 105418605;106423769 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17aa2998a21b816b74694a5287253e69 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440754/ERR1440754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440754/ERR1440754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440754/PHESPV1969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440754/PHESPV1969.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440754/ERR1440754_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440754/ERR1440754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440754/PHESPV1969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440754/PHESPV1969.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101203880;102207597 ERS1196133 ERX1511132 GENOMIC 320069210 2016-06-10 PHESPV1969 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440754/PHESPV1969.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440754/PHESPV1969.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440754 PHESPV1969 ERR1440755 PHESPV1970 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440755 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440755 075d793f605310968e6deaa7c709f9fb;9d69abeeb683922d8d2ef6881919167b 1313 180378819 1d2df7d549dd291fb9584763d711825f;435dd864e8b3a7e7f99fbc2d583c01b7 SAMEA4025024 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440755/ERR1440755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440755/ERR1440755_2.fastq.gz 2039416 WGS PHESPV1970 RANDOM 131087944;131801224 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 24becaa0e9ff487368deaa1b96f9dcb5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440755/ERR1440755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440755/ERR1440755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440755/PHESPV1970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440755/PHESPV1970.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440755/ERR1440755_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440755/ERR1440755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440755/PHESPV1970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440755/PHESPV1970.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125824509;126543887 ERS1196134 ERX1511133 GENOMIC 399409715 2016-06-10 PHESPV1970 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440755/PHESPV1970.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440755/PHESPV1970.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440755 PHESPV1970 ERR1440757 PHESPV1972 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440757 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440757 89af52194314b7920dfc50226d84b90f;6dc22da3ebcf16437b1075e6c4c8ebd4 1313 148472185 dd8dbe1fc800cfa040e309e2130f58bb;7f52ef73daea61accc9014f0c7116441 SAMEA4025026 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440757/ERR1440757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440757/ERR1440757_2.fastq.gz 1668974 WGS PHESPV1972 RANDOM 107809844;108877812 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 25ce1eb21da5508c29e4642b85b2b30a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440757/ERR1440757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440757/ERR1440757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440757/PHESPV1972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440757/PHESPV1972.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440757/ERR1440757_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440757/ERR1440757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440757/PHESPV1972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440757/PHESPV1972.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103484851;104548616 ERS1196136 ERX1511135 GENOMIC 328030798 2016-06-10 PHESPV1972 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440757/PHESPV1972.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440757/PHESPV1972.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440757 PHESPV1972 ERR1440773 PHESPV1988 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440773 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440773 26a298ceb377ac7654aeb0ef989460f1;00d6aef4b9518875056b57f6e3a74487 1313 141524849 7d24928d2f3e62b91bc5768166528319;f11352ccf2b493d0188cdd89b632fb3e SAMEA4025042 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440773/ERR1440773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440773/ERR1440773_2.fastq.gz 1570602 WGS PHESPV1988 RANDOM 100956189;104484694 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 11b74a73a2e107e9ef85ada0d1c0a6c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440773/ERR1440773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440773/ERR1440773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440773/PHESPV1988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440773/PHESPV1988.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440773/ERR1440773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440773/ERR1440773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440773/PHESPV1988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440773/PHESPV1988.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96866426;100369835 ERS1196152 ERX1511151 GENOMIC 306552414 2016-06-10 PHESPV1988 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440773/PHESPV1988.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440773/PHESPV1988.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440773 PHESPV1988 ERR1440774 PHESPV1989 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440774 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440774 5ce213dacbf83f652e10116e2d06babe;36b8f872cfd8e2794700f7a083011cd1 1313 147574685 53eaba146835a4baaaddf935468b76aa;345474fe38fe311b19109866dd1ffdcc SAMEA4025043 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440774/ERR1440774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440774/ERR1440774_2.fastq.gz 1660594 WGS PHESPV1989 RANDOM 106181670;108499709 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d289133a3da056619d1ce47d982c730a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440774/ERR1440774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440774/ERR1440774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440774/PHESPV1989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440774/PHESPV1989.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440774/ERR1440774_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440774/ERR1440774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440774/PHESPV1989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440774/PHESPV1989.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101791313;104100063 ERS1196153 ERX1511152 GENOMIC 321595359 2016-06-10 PHESPV1989 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440774/PHESPV1989.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440774/PHESPV1989.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440774 PHESPV1989 ERR1440778 PHESPV1993 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440778 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440778 a7cef3e5ec02acd9f47ededb899116a5;4a918e48d3f549b5e29c0cf92073bb24 1313 144413635 263650ee42b961d1e5108a5f34ee837c;89256320f4a3eb195dd99df25df40354 SAMEA4025047 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440778/ERR1440778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440778/ERR1440778_2.fastq.gz 1634928 WGS PHESPV1993 RANDOM 104634569;105879344 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline db68f8e9679835e96efb20e9684b9af9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440778/ERR1440778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440778/ERR1440778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440778/PHESPV1993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440778/PHESPV1993.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440778/ERR1440778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440778/ERR1440778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440778/PHESPV1993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440778/PHESPV1993.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100362016;101602788 ERS1196157 ERX1511156 GENOMIC 317730256 2016-06-10 PHESPV1993 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440778/PHESPV1993.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440778/PHESPV1993.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440778 PHESPV1993 ERR1440779 PHESPV1994 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440779 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440779 b78b699dd29951c212553c0bcf5e4c28;a972ffcca65bd6d7d5330c8769ffdb84 1313 153676554 4de85f987604a6169c1e589bc65a3625;5e409ec91ed739ce54a2085072c87ce2 SAMEA4025048 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440779/ERR1440779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440779/ERR1440779_2.fastq.gz 1737005 WGS PHESPV1994 RANDOM 111448688;112532149 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline da9103616fb68028380b47d81d375314 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440779/ERR1440779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440779/ERR1440779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440779/PHESPV1994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440779/PHESPV1994.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440779/ERR1440779_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440779/ERR1440779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440779/PHESPV1994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440779/PHESPV1994.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106904825;107985591 ERS1196158 ERX1511157 GENOMIC 338171034 2016-06-10 PHESPV1994 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440779/PHESPV1994.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440779/PHESPV1994.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440779 PHESPV1994 ERR1440780 PHESPV1995 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440780 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440780 f3fba7e94406f1a7a8fd90c825324b37;a3aa6b32710a0eb55b6d20315b9eab97 1313 148667257 723cdb0fafafb84ff30a7745621bec3e;87afa97317b6a0c793802d2dd3573bb9 SAMEA4025049 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440780/ERR1440780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440780/ERR1440780_2.fastq.gz 1670253 WGS PHESPV1995 RANDOM 107479227;109297546 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline de92117628530fe5666f9729758b5f7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440780/ERR1440780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440780/ERR1440780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440780/PHESPV1995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440780/PHESPV1995.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440780/ERR1440780_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440780/ERR1440780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440780/PHESPV1995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440780/PHESPV1995.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103133172;104944466 ERS1196159 ERX1511158 GENOMIC 327324843 2016-06-10 PHESPV1995 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440780/PHESPV1995.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440780/PHESPV1995.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440780 PHESPV1995 ERR1440781 PHESPV1996 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440781 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440781 16c3cccbc6d752d5308e5074c2cc8869;313fafe94d94c8aa9c7ee7a148c1f073 1313 122608110 5a10e0e6674077ab251838b9057597ef;04df0a18222e8c8b7c02231e64fde74f SAMEA4025050 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440781/ERR1440781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440781/ERR1440781_2.fastq.gz 1427931 WGS PHESPV1996 RANDOM 89183116;89454869 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d914c42234026f8c9035dfb3af2188ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440781/ERR1440781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440781/ERR1440781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440781/PHESPV1996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440781/PHESPV1996.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440781/ERR1440781_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440781/ERR1440781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440781/PHESPV1996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440781/PHESPV1996.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85528581;85804513 ERS1196160 ERX1511159 GENOMIC 268536646 2016-06-10 PHESPV1996 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440781/PHESPV1996.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440781/PHESPV1996.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440781 PHESPV1996 ERR1440782 PHESPV1997 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440782 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440782 65bfe3097ed6340e42095f332b21f170;d46b89d8f35fd6194c8032b00ad74017 1313 159956617 1d0e2264c3861b654242fa7bc02c4ba0;4f6fe896d2d2eb75965d5d82ad3fe74b SAMEA4025051 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440782/ERR1440782_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440782/ERR1440782_2.fastq.gz 1813321 WGS PHESPV1997 RANDOM 116155806;117181506 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e61e526994cb64e0f2fc3a6eb0b61e52 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440782/ERR1440782_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440782/ERR1440782_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440782/PHESPV1997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440782/PHESPV1997.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440782/ERR1440782_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440782/ERR1440782_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440782/PHESPV1997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440782/PHESPV1997.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111417678;112449609 ERS1196161 ERX1511160 GENOMIC 353897839 2016-06-10 PHESPV1997 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440782/PHESPV1997.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440782/PHESPV1997.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440782 PHESPV1997 ERR1440784 PHESPV1999 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440784 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440784 6d477ed0b6bca975adf22e6f42ca4650;1f8ee717d4920c18d1ee05dec26979bd 1313 152929071 3605ab88949413449dd84fcdcf69a7e5;3238d5fe126156817d04c88cf74bfdcc SAMEA4025053 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440784/ERR1440784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440784/ERR1440784_2.fastq.gz 1739763 WGS PHESPV1999 RANDOM 111212836;111462656 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d3e90559aa04584d062bee87da53efc1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440784/ERR1440784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440784/ERR1440784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440784/PHESPV1999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440784/PHESPV1999.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440784/ERR1440784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440784/ERR1440784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440784/PHESPV1999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440784/PHESPV1999.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106618206;106869484 ERS1196163 ERX1511162 GENOMIC 335272973 2016-06-10 PHESPV1999 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440784/PHESPV1999.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440784/PHESPV1999.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440784 PHESPV1999 ERR1440785 PHESPV2000 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440785 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440785 b3908a686d4028abaa539c112f011433;c843edee291533d1019e93cceca9e60e 1313 122995448 5a172156cec3bc3ca80d5bd7837f9da1;52d44ceb3e7b535b627e14a632cf14a5 SAMEA4025054 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440785/ERR1440785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440785/ERR1440785_2.fastq.gz 1389443 WGS PHESPV2000 RANDOM 88470584;90174794 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a82df9c7dd24635eb7e5f13a88f2ca8f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440785/ERR1440785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440785/ERR1440785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440785/PHESPV2000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440785/PHESPV2000.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440785/ERR1440785_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440785/ERR1440785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440785/PHESPV2000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440785/PHESPV2000.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84905815;86602410 ERS1196164 ERX1511163 GENOMIC 267066885 2016-06-10 PHESPV2000 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440785/PHESPV2000.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440785/PHESPV2000.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440785 PHESPV2000 ERR1440798 PHESPV2013 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440798 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440798 31932eb92a07833f289989e1b970de4a;641a6a1f06bc4e3144d0b65917f19075 1313 139664559 009a4c8ce406f0d9d7b9e161f7aecec5;b5dcc3fccdd0e5b15333c52fd4437385 SAMEA4025067 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440798/ERR1440798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440798/ERR1440798_2.fastq.gz 1532252 WGS PHESPV2013 RANDOM 100865576;101439182 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 52ec2b870f8356e84942d3768973e174 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440798/ERR1440798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440798/ERR1440798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440798/PHESPV2013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440798/PHESPV2013.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440798/ERR1440798_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440798/ERR1440798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440798/PHESPV2013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440798/PHESPV2013.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96900178;97484736 ERS1196177 ERX1511176 GENOMIC 297768516 2016-06-10 PHESPV2013 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440798/PHESPV2013.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440798/PHESPV2013.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440798 PHESPV2013 ERR1440796 PHESPV2011 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440796 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440796 d5fda310dfd4b2ae9642e107cd8121bf;394c0b668a6f4bd4c2cd5d92fe9c36d8 1313 193546193 4af7674e05d106fad2dc4989b300a148;6d5ef52465b4ea5a747aeea4b50596e3 SAMEA4025065 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440796/ERR1440796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440796/ERR1440796_2.fastq.gz 2135388 WGS PHESPV2011 RANDOM 139417554;140276609 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 056c559565d125b19db7a8fc1383a1cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440796/ERR1440796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440796/ERR1440796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440796/PHESPV2011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440796/PHESPV2011.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440796/ERR1440796_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440796/ERR1440796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440796/PHESPV2011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440796/PHESPV2011.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133870269;134743232 ERS1196175 ERX1511174 GENOMIC 412229802 2016-06-10 PHESPV2011 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440796/PHESPV2011.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440796/PHESPV2011.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440796 PHESPV2011 ERR1440804 PHESPV2019 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440804 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440804 dfdf2d3c8f27f485f86afc1e180f8876;d1e339782ff17aa69e8b80406ac4ee94 1313 180612398 e0833fdce5424744939d05297727abf5;541629516a79b0912bce538e032df005 SAMEA4025073 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440804/ERR1440804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440804/ERR1440804_2.fastq.gz 1950503 WGS PHESPV2019 RANDOM 129113692;131638088 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6d74c657b1ca3710b04c8784ae23310b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440804/ERR1440804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440804/ERR1440804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440804/PHESPV2019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440804/PHESPV2019.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440804/ERR1440804_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440804/ERR1440804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440804/PHESPV2019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440804/PHESPV2019.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123978764;126505341 ERS1196183 ERX1511182 GENOMIC 381339045 2016-06-10 PHESPV2019 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440804/PHESPV2019.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440804/PHESPV2019.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440804 PHESPV2019 ERR1440806 PHESPV2021 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440806 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440806 233e0be944e22d8c0a184f03781e2df0;271883778ad5b21484021a851d3ea1f0 1313 193335170 f2a4eb8155cf97ca2f6c23553dd63853;7918c87749919a2d4d4ea0d2b96611a2 SAMEA4025075 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440806/ERR1440806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440806/ERR1440806_2.fastq.gz 2119181 WGS PHESPV2021 RANDOM 139436788;139974514 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9948f4a99594a386864c4bf3b44edd5e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440806/ERR1440806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440806/ERR1440806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440806/PHESPV2021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440806/PHESPV2021.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440806/ERR1440806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440806/ERR1440806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440806/PHESPV2021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440806/PHESPV2021.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133984456;134536685 ERS1196185 ERX1511184 GENOMIC 411709389 2016-06-10 PHESPV2021 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440806/PHESPV2021.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440806/PHESPV2021.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440806 PHESPV2021 ERR1440811 PHESPV2026 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440811 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440811 43a5547946428c657427c28041e04abb;e180e29a2a8d36444cc3689ba98b4cf5 1313 150782358 00bddca7c5f5283513772beb6b06d115;40c4bff7f66994f1283d0187fb62f60b SAMEA4025080 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440811/ERR1440811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440811/ERR1440811_2.fastq.gz 1637735 WGS PHESPV2026 RANDOM 108989114;109367379 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 69a9fc36ccb6135fd444c4165e853c36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440811/ERR1440811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440811/ERR1440811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440811/PHESPV2026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440811/PHESPV2026.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440811/ERR1440811_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440811/ERR1440811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440811/PHESPV2026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440811/PHESPV2026.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104693957;105076723 ERS1196190 ERX1511189 GENOMIC 320813475 2016-06-10 PHESPV2026 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440811/PHESPV2026.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440811/PHESPV2026.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440811 PHESPV2026 ERR1440823 PHESPV2038 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440823 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440823 233d8f4f08be65a8e87dfd581c3d7f1d;fcea79bd6a9ee54ee4deef9a9422df61 1313 157354729 988cbbc957e04adb3338700b4b3f9ce3;93b86f15f52ad26b67d8b74ec12a70a5 SAMEA4025092 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440823/ERR1440823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440823/ERR1440823_2.fastq.gz 1691139 WGS PHESPV2038 RANDOM 112187428;115115406 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3f86d80cbf65eaa812b447cf26e10e7d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440823/ERR1440823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440823/ERR1440823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440823/PHESPV2038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440823/PHESPV2038.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440823/ERR1440823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440823/ERR1440823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440823/PHESPV2038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440823/PHESPV2038.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107735384;110655815 ERS1196202 ERX1511201 GENOMIC 331317081 2016-06-10 PHESPV2038 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440823/PHESPV2038.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440823/PHESPV2038.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440823 PHESPV2038 ERR1440816 PHESPV2031 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440816 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440816 9de4ceb574c25a900772939af0cfb3dd;deb5ef6a5d434edbbbe96d6f249be28c 1313 148690858 55f62edd6afe238acc2a61487ed344a6;683786f3c7395de059b6893f0bc70eb5 SAMEA4025085 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440816/ERR1440816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440816/ERR1440816_2.fastq.gz 1601017 WGS PHESPV2031 RANDOM 105562488;108855057 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee1102c96b8ba6d855b8abb82d462c20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440816/ERR1440816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440816/ERR1440816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440816/PHESPV2031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440816/PHESPV2031.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440816/ERR1440816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440816/ERR1440816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440816/PHESPV2031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440816/PHESPV2031.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101375571;104654649 ERS1196195 ERX1511194 GENOMIC 311041890 2016-06-10 PHESPV2031 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440816/PHESPV2031.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440816/PHESPV2031.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440816 PHESPV2031 ERR1440814 PHESPV2029 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440814 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440814 92e0597c9bf8f59b6f59dac081bf0841;a9a672500cffbb1f53eff583bb9ff522 1313 168664263 c239a85e2d93a696a2f3caa92a052b75;2e0fb0ecbe55f4db04d946699555ef7b SAMEA4025083 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440814/ERR1440814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440814/ERR1440814_2.fastq.gz 1838632 WGS PHESPV2029 RANDOM 121503640;122668728 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5baf62d58cbf44681239c09cbb47f63a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440814/ERR1440814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440814/ERR1440814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440814/PHESPV2029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440814/PHESPV2029.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440814/ERR1440814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440814/ERR1440814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440814/PHESPV2029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440814/PHESPV2029.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116673806;117849063 ERS1196193 ERX1511192 GENOMIC 359283109 2016-06-10 PHESPV2029 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440814/PHESPV2029.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440814/PHESPV2029.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440814 PHESPV2029 ERR1440832 PHESPV2047 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440832 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440832 18a57dd7235eab157f82c0b1eaf29a23;edc90050580410649b74dc406ce45665 1313 182449590 e3e150d11be9c1f893e9d1665bfa051c;190ec406f24f868445e93fe24f4ddd38 SAMEA4025101 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440832/ERR1440832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440832/ERR1440832_2.fastq.gz 1989538 WGS PHESPV2047 RANDOM 131698280;132342704 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e48d33e96beffc0fdec4477fe6c0df3c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440832/ERR1440832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440832/ERR1440832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440832/PHESPV2047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440832/PHESPV2047.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440832/ERR1440832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440832/ERR1440832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440832/PHESPV2047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440832/PHESPV2047.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126516791;127173832 ERS1196211 ERX1511210 GENOMIC 388760975 2016-06-10 PHESPV2047 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440832/PHESPV2047.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440832/PHESPV2047.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440832 PHESPV2047 ERR1440838 PHESPV2053 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440838 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440838 7a3d783463ceb605288f788bbf74dce0;aaf8d09e546920ba47acdb99c602f43c 1313 167426398 3808e93411881817fd6dc9ae72acefd8;d66b94832cb11794ddd7958923841040 SAMEA4025107 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440838/ERR1440838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440838/ERR1440838_2.fastq.gz 1804682 WGS PHESPV2053 RANDOM 119634950;122236521 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 76135aa9519bb92d7c0bc284c4d3ae59 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440838/ERR1440838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440838/ERR1440838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440838/PHESPV2053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440838/PHESPV2053.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440838/ERR1440838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440838/ERR1440838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440838/PHESPV2053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440838/PHESPV2053.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114875702;117471105 ERS1196217 ERX1511216 GENOMIC 352776876 2016-06-10 PHESPV2053 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440838/PHESPV2053.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440838/PHESPV2053.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440838 PHESPV2053 ERR1440844 PHESPV2059 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440844 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440844 4440caac2a715a6764b1164e696f7430;bbd59fa426395955108ede02e591fcaf 1313 150825670 ef85fa6c7f666b65426528c883859ae6;107339bd108bc9bf2622419e6928c437 SAMEA4025113 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440844/ERR1440844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440844/ERR1440844_2.fastq.gz 1647795 WGS PHESPV2059 RANDOM 108941567;109677133 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6d004b38f805eb4b14c0494276885651 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440844/ERR1440844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440844/ERR1440844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440844/PHESPV2059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440844/PHESPV2059.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440844/ERR1440844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440844/ERR1440844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440844/PHESPV2059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440844/PHESPV2059.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104652400;105398799 ERS1196223 ERX1511222 GENOMIC 321947767 2016-06-10 PHESPV2059 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440844/PHESPV2059.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440844/PHESPV2059.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440844 PHESPV2059 ERR1439061 PHESPV0272 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439061 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439061 a40bbff9fa617ef8b316ec18c25ada4b;2e1d12989c5ab4c6f09dc4c978f7e2d9 1313 177657577 65f8b4fceaba8868fdbbefb89d8807f0;19859182c9ff1b8541810ddfe89487a1 SAMEA4023330 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439061/ERR1439061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439061/ERR1439061_2.fastq.gz 1488853 WGS PHESPV0272 RANDOM 106736020;113798767 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ee09bf2844bd2b6c7e4df2b43c973eff ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439061/ERR1439061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439061/ERR1439061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439061/PHESPV0272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439061/PHESPV0272.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439061/ERR1439061_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439061/ERR1439061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439061/PHESPV0272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439061/PHESPV0272.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111582004;118643170 ERS1194440 ERX1509439 GENOMIC 291400863 2016-06-10 PHESPV0272 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439061/PHESPV0272.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439061/PHESPV0272.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439061 PHESPV0272 ERR1440846 PHESPV2061 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440846 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440846 cfe811df608df731f1c828288d7e40be;a74898e67a570e7840d22c2a697143a8 1313 153722919 e88dfe354ad9a96363b58c4113e9db7e;81c0bacca42eef52bdbcc29dff7f91f2 SAMEA4025115 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440846/ERR1440846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440846/ERR1440846_2.fastq.gz 1660012 WGS PHESPV2061 RANDOM 109915900;112378582 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 40eeb26caeb34019d449cfb0c485d761 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440846/ERR1440846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440846/ERR1440846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440846/PHESPV2061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440846/PHESPV2061.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440846/ERR1440846_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440846/ERR1440846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440846/PHESPV2061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440846/PHESPV2061.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105578232;108037040 ERS1196225 ERX1511224 GENOMIC 324849398 2016-06-10 PHESPV2061 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440846/PHESPV2061.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440846/PHESPV2061.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440846 PHESPV2061 ERR1439253 PHESPV0464 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439253 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439253 0856225914d0f540c0771b672f5ae31f;a1fe3ae7b10ab07db43dc9577482ef36 1313 198398543 b0580d7187e9e92379733cb1d29a4ee1;822d0c3a0d0718d597a368105a59062e SAMEA4023522 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439253/ERR1439253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439253/ERR1439253_2.fastq.gz 2447840 WGS PHESPV0464 RANDOM 134584040;138033466 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline db52e934184ef0c637d66718d4a923aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439253/ERR1439253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439253/ERR1439253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439253/PHESPV0464.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439253/PHESPV0464.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439253/ERR1439253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439253/ERR1439253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439253/PHESPV0464.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439253/PHESPV0464.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142300149;145712497 ERS1194632 ERX1509631 GENOMIC 478837058 2016-06-10 PHESPV0464 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439253/PHESPV0464.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439253/PHESPV0464.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439253 PHESPV0464 ERR1439261 PHESPV0472 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439261 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439261 4a2def1f690b523a9b47c7d8b05fb43d;9b4f6ff68dc103adff696a81ff311d42 1313 154185307 a2e9ed7aa7f2db512193b28fa24dc871;d30249ac48ce106257e331af0a605f83 SAMEA4023530 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439261/ERR1439261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439261/ERR1439261_2.fastq.gz 1672976 WGS PHESPV0472 RANDOM 111586711;110623740 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4706f1b33db9fa61926c89a872cc3e8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439261/ERR1439261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439261/ERR1439261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439261/PHESPV0472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439261/PHESPV0472.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439261/ERR1439261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439261/ERR1439261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439261/PHESPV0472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439261/PHESPV0472.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107170197;106227197 ERS1194640 ERX1509639 GENOMIC 323692504 2016-06-10 PHESPV0472 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439261/PHESPV0472.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439261/PHESPV0472.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439261 PHESPV0472 ERR1439328 PHESPV0539 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439328 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439328 b9211182d83d111443ae6c47021e9e9c;04e489cabefe610d02f292032f31307d 1313 126540612 727d8ed45a048be6641854aa9739f8e3;bd4c164679fee03ed1dc5cc2ed8aac83 SAMEA4023597 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439328/ERR1439328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439328/ERR1439328_2.fastq.gz 1440721 WGS PHESPV0539 RANDOM 92489723;91608515 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 402e4439c57efe77c5b4bdc32ea9b90d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439328/ERR1439328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439328/ERR1439328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439328/PHESPV0539.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439328/PHESPV0539.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439328/ERR1439328_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439328/ERR1439328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439328/PHESPV0539.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439328/PHESPV0539.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88751570;87905481 ERS1194707 ERX1509706 GENOMIC 278465945 2016-06-10 PHESPV0539 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439328/PHESPV0539.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439328/PHESPV0539.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439328 PHESPV0539 ERR1439358 PHESPV0569 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439358 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439358 99d706e12874161c11b2ceaf27ced796;31cb9f93a103fdeb7c1901371de6a62d 1313 117017712 ea23fbf1a4eafa87832fb827f163744f;e0a01ea0b1ceb7f7198de0cefd9acd8a SAMEA4023627 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439358/ERR1439358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439358/ERR1439358_2.fastq.gz 1283446 WGS PHESPV0569 RANDOM 83910542;85153400 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ac54de010d4aa89319eb70ef78aaa72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439358/ERR1439358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439358/ERR1439358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439358/PHESPV0569.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439358/PHESPV0569.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439358/ERR1439358_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439358/ERR1439358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439358/PHESPV0569.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439358/PHESPV0569.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80686145;81939052 ERS1194737 ERX1509736 GENOMIC 250524663 2016-06-10 PHESPV0569 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439358/PHESPV0569.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439358/PHESPV0569.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439358 PHESPV0569 ERR1439457 PHESPV0668 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439457 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439457 dc00e4ecd76b1c7f480680fa8d6a7108;197faf47f070e9dd66933d156eb89671 1313 111652445 f68c71fe6d180a3ca2633489076abbf6;f0acfa6e5bcc816fe819d47017fc126b SAMEA4023726 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439457/ERR1439457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439457/ERR1439457_2.fastq.gz 1245604 WGS PHESPV0668 RANDOM 80628535;81160931 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8aeba7d5e560da2759cc9094ed179295 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439457/ERR1439457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439457/ERR1439457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439457/PHESPV0668.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439457/PHESPV0668.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439457/ERR1439457_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439457/ERR1439457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439457/PHESPV0668.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439457/PHESPV0668.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77491992;78037149 ERS1194836 ERX1509835 GENOMIC 241505921 2016-06-10 PHESPV0668 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439457/PHESPV0668.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439457/PHESPV0668.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439457 PHESPV0668 ERR1439459 PHESPV0670 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439459 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439459 a0904df2f4c10c1f798fdc4b2a0e2c10;668b033b2aa4feaf6505701ac2862a7c 1313 99277284 4ef3c3923083ff7086764d0046d36c70;bf4e061652f4e35c874683786ac8c914 SAMEA4023728 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439459/ERR1439459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439459/ERR1439459_2.fastq.gz 1079780 WGS PHESPV0670 RANDOM 71855581;71527843 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 93cfa38333f864fc4a6ef516c385a1cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439459/ERR1439459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439459/ERR1439459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439459/PHESPV0670.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439459/PHESPV0670.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439459/ERR1439459_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439459/ERR1439459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439459/PHESPV0670.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439459/PHESPV0670.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69112901;68790781 ERS1194838 ERX1509837 GENOMIC 206569793 2016-06-10 PHESPV0670 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439459/PHESPV0670.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439459/PHESPV0670.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439459 PHESPV0670 ERR1439463 PHESPV0674 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439463 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439463 6ece3979f3a5ff247986698d3efdcf5d;da3c76c296106eaa5f4ebf2de45da6d4 1313 186819178 d7e51f0fd6783e9577e65b653a704c50;3c95b5793bdb3aa0bd6489f5ef8ce4fc SAMEA4023732 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439463/ERR1439463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439463/ERR1439463_2.fastq.gz 1976733 WGS PHESPV0674 RANDOM 132776474;135387848 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a03c08b9a8ac5345525c23e65ae7c6a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439463/ERR1439463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439463/ERR1439463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439463/PHESPV0674.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439463/PHESPV0674.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439463/ERR1439463_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439463/ERR1439463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439463/PHESPV0674.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439463/PHESPV0674.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127632552;130228494 ERS1194842 ERX1509841 GENOMIC 381728078 2016-06-10 PHESPV0674 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439463/PHESPV0674.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439463/PHESPV0674.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439463 PHESPV0674 ERR1439464 PHESPV0675 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439464 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439464 266e326b184eb257d6ff373ee780b3a2;f86187d228dedea565e36e45005cd0af 1313 108940632 8b8b07655f14daf3d86057faa0475a6a;0dac31f7fbfec0f4b7f46b8b8bac2cee SAMEA4023733 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439464/ERR1439464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439464/ERR1439464_2.fastq.gz 1189913 WGS PHESPV0675 RANDOM 74951349;76990198 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e40108035217995c61ba5cbbaec787e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439464/ERR1439464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439464/ERR1439464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439464/PHESPV0675.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439464/PHESPV0675.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439464/ERR1439464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439464/ERR1439464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439464/PHESPV0675.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439464/PHESPV0675.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71940475;73999532 ERS1194843 ERX1509842 GENOMIC 217492564 2016-06-10 PHESPV0675 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439464/PHESPV0675.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439464/PHESPV0675.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439464 PHESPV0675 ERR1439575 PHESPV0786 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439575 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439575 7a34b65c722877569aa493ea4facd14a;b5a9f13ff57085f67f81b5d28bd30ec0 1313 95993168 0271901da58b6c060de51da932fc728c;82536b7c13e1393194069d7bbf731513 SAMEA4023844 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439575/ERR1439575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439575/ERR1439575_2.fastq.gz 1058906 WGS PHESPV0786 RANDOM 66694336;67510356 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a5a23149c384ab5d619048ae720191e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439575/ERR1439575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439575/ERR1439575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439575/PHESPV0786.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439575/PHESPV0786.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439575/ERR1439575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439575/ERR1439575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439575/PHESPV0786.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439575/PHESPV0786.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63962374;64823553 ERS1194954 ERX1509953 GENOMIC 192581998 2016-06-10 PHESPV0786 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439575/PHESPV0786.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439575/PHESPV0786.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439575 PHESPV0786 ERR1439612 PHESPV0823 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439612 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439612 272a10646e91567436646c5c0a5490b2;634248ee42ee6ae2a428eb7ee1ef99d8 1313 313177915 955b9c728ed8bbfcb133fc1c0f61c685;271ed4d63fb0d5347f8d721312c28e14 SAMEA4023881 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439612/ERR1439612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439612/ERR1439612_2.fastq.gz 3359959 WGS PHESPV0823 RANDOM 224658965;226516275 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b7efe909cbb9554b2121ee401030b545 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439612/ERR1439612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439612/ERR1439612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439612/PHESPV0823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439612/PHESPV0823.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439612/ERR1439612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439612/ERR1439612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439612/PHESPV0823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439612/PHESPV0823.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 215629945;217473373 ERS1194991 ERX1509990 GENOMIC 653492351 2016-06-10 PHESPV0823 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439612/PHESPV0823.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439612/PHESPV0823.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439612 PHESPV0823 ERR1439619 PHESPV0830 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439619 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439619 36c5efe208006a8b406648dac37b200d;18c94b75d11b37e8cfdb9b750291bf94 1313 134188400 a0c707ca1a19103d6f802168c4ff9c3b;e0a67c2eb727e0962c97fb569ff39433 SAMEA4023888 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439619/ERR1439619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439619/ERR1439619_2.fastq.gz 1460192 WGS PHESPV0830 RANDOM 92172524;95093678 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c0265fbc67110d1b291507b2eab6b51f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439619/ERR1439619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439619/ERR1439619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439619/PHESPV0830.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439619/PHESPV0830.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439619/ERR1439619_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439619/ERR1439619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439619/PHESPV0830.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439619/PHESPV0830.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88375945;91348343 ERS1194998 ERX1509997 GENOMIC 267213495 2016-06-10 PHESPV0830 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439619/PHESPV0830.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439619/PHESPV0830.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439619 PHESPV0830 ERR1439636 PHESPV0847 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439636 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439636 9bee57105d207007ff99ebebc7cd41c9;b86d6e23de722fd385e0d61f54839bf0 1313 230453941 ea23843625824c3c1ac36b50f220937e;deab79b3340bdc8760598706833ea44d SAMEA4023905 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439636/ERR1439636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439636/ERR1439636_2.fastq.gz 2490503 WGS PHESPV0847 RANDOM 165707999;165506557 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b52b08efa19e6e101e23a06f13d16a5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439636/ERR1439636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439636/ERR1439636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439636/PHESPV0847.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439636/PHESPV0847.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439636/ERR1439636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439636/ERR1439636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439636/PHESPV0847.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439636/PHESPV0847.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 159477225;159272821 ERS1195015 ERX1510014 GENOMIC 481031013 2016-06-10 PHESPV0847 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439636/PHESPV0847.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439636/PHESPV0847.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439636 PHESPV0847 ERR1439654 PHESPV0865 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439654 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439654 2ae4d182b0088308ae85ac56dcf6c221;a6010a59868c783737d0c3e10497d781 1313 178060508 470c57cb8da15cd0d9dafb35a067a061;0b15b50126aa902618d43590dac9a4fc SAMEA4023923 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439654/ERR1439654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439654/ERR1439654_2.fastq.gz 2029990 WGS PHESPV0865 RANDOM 130095568;129216506 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 14dfff4cfd3a2fa0041c9ca7ea687981 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439654/ERR1439654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439654/ERR1439654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439654/PHESPV0865.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439654/PHESPV0865.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439654/ERR1439654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439654/ERR1439654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439654/PHESPV0865.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439654/PHESPV0865.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124805257;123954852 ERS1195033 ERX1510032 GENOMIC 390091302 2016-06-10 PHESPV0865 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439654/PHESPV0865.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439654/PHESPV0865.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439654 PHESPV0865 ERR1439671 PHESPV0882 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439671 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439671 ae4b5069192f4c2f02bcc9e6a3c8da9d;c998c0fd13e08c77f160c19184d4d0ac 1313 148951594 4eae5ef1b7b9543802e4826de48de9a4;9ee4496c0c3570b934c63dbc04e66312 SAMEA4023940 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439671/ERR1439671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439671/ERR1439671_2.fastq.gz 1680753 WGS PHESPV0882 RANDOM 107719974;108742499 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e1b149cb481a2a10a35aa29f5fa6903f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439671/ERR1439671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439671/ERR1439671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439671/PHESPV0882.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439671/PHESPV0882.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439671/ERR1439671_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439671/ERR1439671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439671/PHESPV0882.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439671/PHESPV0882.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103318774;104358949 ERS1195050 ERX1510049 GENOMIC 321623275 2016-06-10 PHESPV0882 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439671/PHESPV0882.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439671/PHESPV0882.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439671 PHESPV0882 ERR1439691 PHESPV0902 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439691 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439691 ba8a742b385d522f24db739437d5817b;ddaf1b223be488bee5089d5969066840 1313 196612625 954d258220fe68d9d0df642b42bd89c4;149e1dff13a95bcabe84fa3d1eec80b8 SAMEA4023960 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439691/ERR1439691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439691/ERR1439691_2.fastq.gz 2227076 WGS PHESPV0902 RANDOM 143014035;142811667 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 37124099e8c65fcf7a95d83d54897a92 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439691/ERR1439691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439691/ERR1439691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439691/PHESPV0902.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439691/PHESPV0902.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439691/ERR1439691_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439691/ERR1439691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439691/PHESPV0902.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439691/PHESPV0902.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137319431;137144059 ERS1195070 ERX1510069 GENOMIC 430847786 2016-06-10 PHESPV0902 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439691/PHESPV0902.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439691/PHESPV0902.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439691 PHESPV0902 ERR1439708 PHESPV0919 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439708 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439708 e53c4433c533be2293d2ebcdc5f565d6;053d381e284d5e90e7216434fa08d307 1313 147453798 740b211122089236600645d430632b4b;f4fbed665ed50c15b9d6a19f5aa15fcb SAMEA4023977 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439708/ERR1439708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439708/ERR1439708_2.fastq.gz 1657538 WGS PHESPV0919 RANDOM 107230510;107337769 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e6ae668984ce19adfa78aa53cde87fd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439708/ERR1439708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439708/ERR1439708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439708/PHESPV0919.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439708/PHESPV0919.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439708/ERR1439708_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439708/ERR1439708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439708/PHESPV0919.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439708/PHESPV0919.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102891476;103016763 ERS1195087 ERX1510086 GENOMIC 320023251 2016-06-10 PHESPV0919 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439708/PHESPV0919.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439708/PHESPV0919.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439708 PHESPV0919 ERR1439755 PHESPV0966 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439755 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439755 17464ca0c2803dda41d76141822f80c4;b925db168fb4d2c5cd24543231ea3859 1313 114878351 9c76f7332a5c7c6d36cbfccc1ee9b360;95d767320e5b3257ed76aa99b397b867 SAMEA4024024 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439755/ERR1439755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439755/ERR1439755_2.fastq.gz 1332571 WGS PHESPV0966 RANDOM 83307121;83716594 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a185131b8744f5c93bccf95f8db986f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439755/ERR1439755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439755/ERR1439755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439755/PHESPV0966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439755/PHESPV0966.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439755/ERR1439755_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439755/ERR1439755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439755/PHESPV0966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439755/PHESPV0966.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79935834;80366553 ERS1195134 ERX1510133 GENOMIC 247885846 2016-06-10 PHESPV0966 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439755/PHESPV0966.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439755/PHESPV0966.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439755 PHESPV0966 ERR1439851 PHESPV1062 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439851 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439851 3ab0d9b91e56ccf1a3b094368c23f3cd;bff6290ed4ed2d8c7cb89c103b352bbb 1313 155514959 b114ab3a13e8cce478b5d44087973dc4;ceadb4e23937f35e531702a5168ea29f SAMEA4024120 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439851/ERR1439851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439851/ERR1439851_2.fastq.gz 1700786 WGS PHESPV1062 RANDOM 104350958;106042510 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54f3080e93e412a4cfc9b91344b2e071 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439851/ERR1439851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439851/ERR1439851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439851/PHESPV1062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439851/PHESPV1062.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439851/ERR1439851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439851/ERR1439851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439851/PHESPV1062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439851/PHESPV1062.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109955414;111628121 ERS1195230 ERX1510229 GENOMIC 336622535 2016-06-10 PHESPV1062 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439851/PHESPV1062.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439851/PHESPV1062.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439851 PHESPV1062 ERR1439870 PHESPV1081 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439870 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439870 38bcaec093ba848ac29a2b60c4a796b2;86dba48a43ca62b26d42ec41737384a8 1313 156424335 9efb2486e34051030be1cc00fe8615a3;37e3fb01a1fdfe39191497ea4017bb38 SAMEA4024139 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439870/ERR1439870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439870/ERR1439870_2.fastq.gz 1704322 WGS PHESPV1081 RANDOM 105039560;105992044 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ef20bdbb623f29942e2bb559983ed50c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439870/ERR1439870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439870/ERR1439870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439870/PHESPV1081.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439870/PHESPV1081.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439870/ERR1439870_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439870/ERR1439870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439870/PHESPV1081.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439870/PHESPV1081.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110660174;111609314 ERS1195249 ERX1510248 GENOMIC 337450317 2016-06-10 PHESPV1081 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439870/PHESPV1081.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439870/PHESPV1081.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439870 PHESPV1081 ERR1439824 PHESPV1035 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439824 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439824 a26f46761a13464cdb74b0bf206ca78d;98a6e2ff81bfcfae043ed158ea96ddec 1313 106733327 4f7916b1640ef1cef98b4760341711dc;a8ca711cea3618bd153b7435782ab493 SAMEA4024093 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439824/ERR1439824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439824/ERR1439824_2.fastq.gz 1167696 WGS PHESPV1035 RANDOM 71649462;72571616 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4e3f5cf1e72ac088df93e13f9babb3a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439824/ERR1439824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439824/ERR1439824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439824/PHESPV1035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439824/PHESPV1035.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439824/ERR1439824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439824/ERR1439824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439824/PHESPV1035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439824/PHESPV1035.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75647608;76556258 ERS1195203 ERX1510202 GENOMIC 231193908 2016-06-10 PHESPV1035 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439824/PHESPV1035.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439824/PHESPV1035.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439824 PHESPV1035 ERR1440125 PHESPV1337 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440125 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440125 a64deb8185e07b3bf38a494962b2df74;d6d2971ed06321f6713c9f7ae8f61680 1313 134788304 f0e4b9a0129fa44d78348f54c02d6ac8;3d54424a731c294e504b499a6c414a7a SAMEA4024394 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440125/ERR1440125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440125/ERR1440125_2.fastq.gz 1474866 WGS PHESPV1337 RANDOM 90365475;91795512 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ba5ebbba4793aa3b0666cd11f9bd3b0a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440125/ERR1440125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440125/ERR1440125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440125/PHESPV1337.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440125/PHESPV1337.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440125/ERR1440125_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440125/ERR1440125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440125/PHESPV1337.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440125/PHESPV1337.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95294020;96702435 ERS1195504 ERX1510503 GENOMIC 291858015 2016-06-10 PHESPV1337 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440125/PHESPV1337.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440125/PHESPV1337.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440125 PHESPV1337 ERR1440193 PHESPV1407 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440193 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440193 e6219972789e080398607eead7d4e497;c593628160f3b11fe33858c9a517f312 1313 161645383 d8b379a7a687ffae00c5d43aeba72902;7fbea7b3f13dafcb75eef3e4ecff2831 SAMEA4024462 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440193/ERR1440193_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440193/ERR1440193_2.fastq.gz 1847470 WGS PHESPV1407 RANDOM 108910118;110762598 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e6784221a76c42685d9d5cb023dd2eca ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440193/ERR1440193_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440193/ERR1440193_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440193/PHESPV1407.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440193/PHESPV1407.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440193/ERR1440193_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440193/ERR1440193_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440193/PHESPV1407.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440193/PHESPV1407.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114881191;116739385 ERS1195572 ERX1510571 GENOMIC 366457769 2016-06-10 PHESPV1407 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440193/PHESPV1407.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440193/PHESPV1407.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440193 PHESPV1407 ERR1440223 PHESPV1437 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440223 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440223 8692eee391049e29b239316b9bb4dac9;72ac0218a94c21485e8648db2f7feb30 1313 189075683 5baf07b783458545d7b2ca2a4c23d436;3780ab1b475ac1a3d3b89a67b2ac3de8 SAMEA4024492 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440223/ERR1440223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440223/ERR1440223_2.fastq.gz 2264873 WGS PHESPV1437 RANDOM 125970395;132605241 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6a77297542088eefb311711b378ff3d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440223/ERR1440223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440223/ERR1440223_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440223/PHESPV1437.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440223/PHESPV1437.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440223/ERR1440223_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440223/ERR1440223_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440223/PHESPV1437.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440223/PHESPV1437.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133031774;139584222 ERS1195602 ERX1510601 GENOMIC 449586250 2016-06-10 PHESPV1437 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440223/PHESPV1437.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440223/PHESPV1437.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440223 PHESPV1437 ERR1440340 PHESPV1555 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440340 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440340 d9788e7eea4034181a1658e0cd1cac5d;ff36043cdab90ff6c726a4c48fee9d1a 1313 155969624 0df6b01a822f7a05bc715d45514fe593;5f5facd3d45c4fad3a58c1767ad08795 SAMEA4024609 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440340/ERR1440340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440340/ERR1440340_2.fastq.gz 1707148 WGS PHESPV1555 RANDOM 104550464;106128526 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e2d1e022c9d3b0187f0d63dd898326a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440340/ERR1440340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440340/ERR1440340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440340/PHESPV1555.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440340/PHESPV1555.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440340/ERR1440340_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440340/ERR1440340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440340/PHESPV1555.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440340/PHESPV1555.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110164267;111717843 ERS1195719 ERX1510718 GENOMIC 337779842 2016-06-10 PHESPV1555 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440340/PHESPV1555.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440340/PHESPV1555.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440340 PHESPV1555 ERR1440382 PHESPV1597 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440382 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440382 c5c2a8802e15253f6611b1f147ab8d4a;4cf8b2cda4cda1d5a6e5c313c2a80649 1313 135900208 3dd5a1b738d203f8e854efcb17fc84fa;d920fe29bc607d1a1f3d3e8d984c66df SAMEA4024651 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440382/ERR1440382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440382/ERR1440382_2.fastq.gz 1570369 WGS PHESPV1597 RANDOM 96390241;102993802 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a8f29778ebff5aab0d344471b1d693d9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440382/ERR1440382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440382/ERR1440382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440382/PHESPV1597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440382/PHESPV1597.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440382/ERR1440382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440382/ERR1440382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440382/PHESPV1597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440382/PHESPV1597.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92465723;98991463 ERS1195761 ERX1510760 GENOMIC 308283159 2016-06-10 PHESPV1597 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440382/PHESPV1597.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440382/PHESPV1597.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440382 PHESPV1597 ERR1440391 PHESPV1606 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440391 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440391 d281f65681b9c55bf6f2388cf8e99e8c;82ff2630023363f6d66bff4129dc60d6 1313 158451819 bd036b812200006529dd44e57e00a0ce;0c8eec551479111acc908803fbd83b12 SAMEA4024660 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440391/ERR1440391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440391/ERR1440391_2.fastq.gz 1839731 WGS PHESPV1606 RANDOM 114020262;119187853 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cf1cea51f38cfbcf482d036c56abfa2a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440391/ERR1440391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440391/ERR1440391_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440391/PHESPV1606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440391/PHESPV1606.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440391/ERR1440391_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440391/ERR1440391_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440391/PHESPV1606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440391/PHESPV1606.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109303714;114422189 ERS1195770 ERX1510769 GENOMIC 363266985 2016-06-10 PHESPV1606 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440391/PHESPV1606.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440391/PHESPV1606.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440391 PHESPV1606 ERR1440417 PHESPV1632 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440417 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440417 c21321ab1c2868de4b6748d885c678fb;b4e7dd8ecfe2a89c98bddbb70f8d413e 1313 158357735 9e96c9b9e814014621c56ac6f5c89bd5;158070f14e5b31d77a103a6681db0b86 SAMEA4024686 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440417/ERR1440417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440417/ERR1440417_2.fastq.gz 1726242 WGS PHESPV1632 RANDOM 113999576;115733229 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f5a8f75b85eebda824de25401d48a674 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440417/ERR1440417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440417/ERR1440417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440417/PHESPV1632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440417/PHESPV1632.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440417/ERR1440417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440417/ERR1440417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440417/PHESPV1632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440417/PHESPV1632.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109538508;111266363 ERS1195796 ERX1510795 GENOMIC 336963540 2016-06-10 PHESPV1632 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440417/PHESPV1632.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440417/PHESPV1632.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440417 PHESPV1632 ERR1440498 PHESPV1713 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440498 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440498 e34e40352a63f55cef60a476f9489a5b;023d15f58844e0438289f2b2a1dc235d 1313 135458240 034d382b83610eeac40066c8097e1e7f;50eb75790d95949722e1eafd07438ebc SAMEA4024767 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440498/ERR1440498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440498/ERR1440498_2.fastq.gz 1516879 WGS PHESPV1713 RANDOM 97775749;98176379 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8d37abdddb81e03096d319dfc01c7c57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440498/ERR1440498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440498/ERR1440498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440498/PHESPV1713.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440498/PHESPV1713.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440498/ERR1440498_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440498/ERR1440498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440498/PHESPV1713.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440498/PHESPV1713.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93873057;94288105 ERS1195877 ERX1510876 GENOMIC 291642209 2016-06-10 PHESPV1713 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440498/PHESPV1713.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440498/PHESPV1713.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440498 PHESPV1713 ERR1439262 PHESPV0473 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439262 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439262 d0d9acb77fd915d5268966a7cfd4c334;6cef076e21837ba84ec2bd607f2dc6b6 1313 208931520 8f6931f440bf79e1e9cbad514f34aecd;d4e1e184e3b2f5d632b2fd1353f23ccc SAMEA4023531 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439262/ERR1439262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439262/ERR1439262_2.fastq.gz 2323054 WGS PHESPV0473 RANDOM 137954211;143266895 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 12ee8e669c63d908ae39ec00db6eb67a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439262/ERR1439262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439262/ERR1439262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439262/PHESPV0473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439262/PHESPV0473.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439262/ERR1439262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439262/ERR1439262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439262/PHESPV0473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439262/PHESPV0473.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 145201097;150459022 ERS1194641 ERX1509640 GENOMIC 459771909 2016-06-10 PHESPV0473 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439262/PHESPV0473.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439262/PHESPV0473.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439262 PHESPV0473 ERR1439263 PHESPV0474 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439263 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439263 c56c7d1922b66a70604053bfab05b63f;ceba043a90a8d63aaf780f11a41a3d6d 1313 237297640 9a4687c90661af64945b863105527450;1912a8ee3f0cee70f785191557af7c00 SAMEA4023532 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439263/ERR1439263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439263/ERR1439263_2.fastq.gz 2649551 WGS PHESPV0474 RANDOM 155967854;161388029 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c81ae2fff9243d2d9b55a87adf5d4227 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439263/ERR1439263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439263/ERR1439263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439263/PHESPV0474.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439263/PHESPV0474.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439263/ERR1439263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439263/ERR1439263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439263/PHESPV0474.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439263/PHESPV0474.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 164089318;169451949 ERS1194642 ERX1509641 GENOMIC 524223314 2016-06-10 PHESPV0474 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439263/PHESPV0474.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439263/PHESPV0474.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439263 PHESPV0474 ERR1439592 PHESPV0803 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439592 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439592 44d2740dac680023a9803011bc2114f8;3b8a1402c8b28724032a2abfe70c14fa 1313 157195305 fab00f41ca2cfa6e3bb4ec8b45641a00;8b6e506424495e5cf276526cb552ecd3 SAMEA4023861 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439592/ERR1439592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439592/ERR1439592_2.fastq.gz 1737851 WGS PHESPV0803 RANDOM 102895614;106065932 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 04bbbb44a7ccbec4be965ddc50d38845 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439592/ERR1439592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439592/ERR1439592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439592/PHESPV0803.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439592/PHESPV0803.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439592/ERR1439592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439592/ERR1439592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439592/PHESPV0803.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439592/PHESPV0803.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108501203;111613981 ERS1194971 ERX1509970 GENOMIC 343196341 2016-06-10 PHESPV0803 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439592/PHESPV0803.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439592/PHESPV0803.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439592 PHESPV0803 ERR1439639 PHESPV0850 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439639 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439639 285e5843c77a1c5a66ad0294f9fb0c7c;d97bb9336da29bc37aaeb02ff2873e4e 1313 266154346 98cc4623d42106daa785a19076df5caf;a284dbab1db5db2a2c404edaa7a210da SAMEA4023908 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439639/ERR1439639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439639/ERR1439639_2.fastq.gz 2965781 WGS PHESPV0850 RANDOM 174885168;181855142 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bec9e0e4544ae28f416fe2e3678ea1bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439639/ERR1439639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439639/ERR1439639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439639/PHESPV0850.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439639/PHESPV0850.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439639/ERR1439639_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439639/ERR1439639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439639/PHESPV0850.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439639/PHESPV0850.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 183845796;190752138 ERS1195018 ERX1510017 GENOMIC 586538803 2016-06-10 PHESPV0850 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439639/PHESPV0850.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439639/PHESPV0850.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439639 PHESPV0850 ERR1440201 PHESPV1415 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440201 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440201 48b5f7e844e052f85a904e3679241a75;f79a19f9d75f9260f0bde97692551e28 1313 116552657 82d86ef29b76d46cab81734d6f10983a;ee90fe544f33a5b354f87978bd8dcc26 SAMEA4024470 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440201/ERR1440201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440201/ERR1440201_2.fastq.gz 1261931 WGS PHESPV1415 RANDOM 78089823;79266230 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b74f6fc8e005dc9e4f3283e4a83d437 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440201/ERR1440201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440201/ERR1440201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440201/PHESPV1415.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440201/PHESPV1415.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440201/ERR1440201_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440201/ERR1440201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440201/PHESPV1415.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440201/PHESPV1415.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82369122;83529845 ERS1195580 ERX1510579 GENOMIC 249687891 2016-06-10 PHESPV1415 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440201/PHESPV1415.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440201/PHESPV1415.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440201 PHESPV1415 ERR1438805 PHESPV0015 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438805 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438805 f07c6771fd27a6ab2b7094ab7d5b7d3d;510481fedeed6e5d56b2f7b48a296654 1313 121168452 614fd5e940fd6db8626b9288f86288cc;d8744bb1029f8b8301e03b25037b08bc SAMEA4023074 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438805/ERR1438805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438805/ERR1438805_2.fastq.gz 1512098 WGS PHESPV0015 RANDOM 81723133;84688380 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ea73c447276cfbe9a658826392347f8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438805/ERR1438805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438805/ERR1438805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438805/PHESPV0015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438805/PHESPV0015.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438805/ERR1438805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438805/ERR1438805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438805/PHESPV0015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438805/PHESPV0015.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86789339;89722284 ERS1194184 ERX1509183 GENOMIC 296417538 2016-06-10 PHESPV0015 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438805/PHESPV0015.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438805/PHESPV0015.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438805 PHESPV0015 ERR1438807 PHESPV0017 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438807 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438807 bc6c6dcfeb1247da81fb78f635350aca;3ab408a11794bfab96dd16fcb67ced2b 1313 112925907 dc79d07b4541f8ad77b462f77c12c462;c4a227285c84145fd8753b5545b109d5 SAMEA4023076 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438807/ERR1438807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438807/ERR1438807_2.fastq.gz 1406069 WGS PHESPV0017 RANDOM 76186530;79044868 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 67fa050bca61729a12e8dcd79f976063 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438807/ERR1438807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438807/ERR1438807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438807/PHESPV0017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438807/PHESPV0017.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438807/ERR1438807_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438807/ERR1438807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438807/PHESPV0017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438807/PHESPV0017.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80911074;83729415 ERS1194186 ERX1509185 GENOMIC 275618188 2016-06-10 PHESPV0017 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438807/PHESPV0017.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438807/PHESPV0017.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438807 PHESPV0017 ERR1439169 PHESPV0380 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439169 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439169 e28ed403e9254e510c76ee0ac3e1c8e8;dd3bf41c203668953af82d91b2084bd4 1313 145916708 75f0609b8ab1f8af1f384834dc07935e;1b5f21974aa317ab30a869d655ce0b86 SAMEA4023438 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439169/ERR1439169_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439169/ERR1439169_2.fastq.gz 1578336 WGS PHESPV0380 RANDOM 105785582;105041629 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 815b661b44debfad60e3055b01277bcc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439169/ERR1439169_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439169/ERR1439169_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439169/PHESPV0380.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439169/PHESPV0380.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439169/ERR1439169_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439169/ERR1439169_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439169/PHESPV0380.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439169/PHESPV0380.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101682931;100962141 ERS1194548 ERX1509547 GENOMIC 309727503 2016-06-10 PHESPV0380 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439169/PHESPV0380.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439169/PHESPV0380.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439169 PHESPV0380 ERR1439137 PHESPV0348 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439137 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439137 f01106cc277f776e8c3a5ce6ec0eb46e;9a52d74e7c1145d086ccef06fc454cea 1313 112778430 4d5e585d214fc031abd9134126c9fde0;9971350e8325fa42b4b508996d4e3999 SAMEA4023406 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439137/ERR1439137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439137/ERR1439137_2.fastq.gz 1231629 WGS PHESPV0348 RANDOM 81918020;80943963 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c16adf86c1104cb0bb9f1d0d0d579cac ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439137/ERR1439137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439137/ERR1439137_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439137/PHESPV0348.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439137/PHESPV0348.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439137/ERR1439137_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439137/ERR1439137_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439137/PHESPV0348.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439137/PHESPV0348.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78798419;77836199 ERS1194516 ERX1509515 GENOMIC 239510973 2016-06-10 PHESPV0348 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439137/PHESPV0348.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439137/PHESPV0348.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439137 PHESPV0348 ERR1439378 PHESPV0589 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439378 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439378 ddfc2d21550126af8d38a44377bbeed4;593f0025ecb54626fbc30433e6974065 1313 235068819 5afff83ca3a713d82c0fe9a12df3f843;97780a593eae8a6dea22f5b14c9e1e7f SAMEA4023647 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439378/ERR1439378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439378/ERR1439378_2.fastq.gz 2942217 WGS PHESPV0589 RANDOM 159504331;164660140 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b8dbb09cef45e9fc385fe59841c3a76c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439378/ERR1439378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439378/ERR1439378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439378/PHESPV0589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439378/PHESPV0589.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439378/ERR1439378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439378/ERR1439378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439378/PHESPV0589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439378/PHESPV0589.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 168406671;173561563 ERS1194757 ERX1509756 GENOMIC 577004705 2016-06-10 PHESPV0589 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439378/PHESPV0589.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439378/PHESPV0589.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439378 PHESPV0589 ERR1439490 PHESPV0701 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439490 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439490 04de15b231c09e45fc2f47f2e033d60a;ac002d7fd1e2ab268c9eceaa0a8d02b8 1313 87535468 62c5f1d2e491cede7bf631558b6559a4;4675d659fa5e057e8fd95230e6d40d55 SAMEA4023759 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439490/ERR1439490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439490/ERR1439490_2.fastq.gz 1052690 WGS PHESPV0701 RANDOM 58638008;61522866 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8d2266013b93ea29fbb90f71c1138ab7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439490/ERR1439490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439490/ERR1439490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439490/PHESPV0701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439490/PHESPV0701.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439490/ERR1439490_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439490/ERR1439490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439490/PHESPV0701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439490/PHESPV0701.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62331592;65247176 ERS1194869 ERX1509868 GENOMIC 205792960 2016-06-10 PHESPV0701 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439490/PHESPV0701.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439490/PHESPV0701.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439490 PHESPV0701 ERR1439472 PHESPV0683 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439472 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439472 b6b017f630e7e993db5d954e4d7512f2;7f45a2a2d015c2dc26d71ee0b7c8a41e 1313 89294495 8f87721de46385f666bb0d333074589d;1d9d06d776f82495deeff6b89f3c2b28 SAMEA4023741 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439472/ERR1439472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439472/ERR1439472_2.fastq.gz 1068299 WGS PHESPV0683 RANDOM 59456527;62887663 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 005cf7c947db06df60b05300ace1329e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439472/ERR1439472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439472/ERR1439472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439472/PHESPV0683.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439472/PHESPV0683.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439472/ERR1439472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439472/ERR1439472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439472/PHESPV0683.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439472/PHESPV0683.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63201952;66654008 ERS1194851 ERX1509850 GENOMIC 208523013 2016-06-10 PHESPV0683 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439472/PHESPV0683.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439472/PHESPV0683.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439472 PHESPV0683 ERR1439505 PHESPV0716 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439505 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439505 64cd8d5d659a4500f6bdde35fbf169a4;242bda5c702ef6599aacbe9c7fc370f1 1313 96988349 98f9ac1d74946cdf0ffd13c6624daf23;b5777bca87bb18daff6fca1f8fbf3eba SAMEA4023774 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439505/ERR1439505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439505/ERR1439505_2.fastq.gz 1167400 WGS PHESPV0716 RANDOM 65038084;68060481 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7a3e0a0cce891f124c487ef460aa6903 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439505/ERR1439505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439505/ERR1439505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439505/PHESPV0716.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439505/PHESPV0716.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439505/ERR1439505_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439505/ERR1439505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439505/PHESPV0716.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439505/PHESPV0716.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69080635;72149324 ERS1194884 ERX1509883 GENOMIC 228253519 2016-06-10 PHESPV0716 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439505/PHESPV0716.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439505/PHESPV0716.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439505 PHESPV0716 ERR1439507 PHESPV0718 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439507 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439507 e8d1fcfb11b7e0bbb6ab84d23e81db2f;3d51fa12a98b94cfe230111629076bc0 1313 128322547 57356da418b17e9f191b12ac0580f754;7859b859071b14d426aecd42a88f2a1f SAMEA4023776 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439507/ERR1439507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439507/ERR1439507_2.fastq.gz 1550794 WGS PHESPV0718 RANDOM 86462081;89697017 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 00229b5b1c9186daa8a5b4baf0ec3be1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439507/ERR1439507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439507/ERR1439507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439507/PHESPV0718.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439507/PHESPV0718.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439507/ERR1439507_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439507/ERR1439507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439507/PHESPV0718.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439507/PHESPV0718.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91636105;94927195 ERS1194886 ERX1509885 GENOMIC 303501385 2016-06-10 PHESPV0718 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439507/PHESPV0718.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439507/PHESPV0718.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439507 PHESPV0718 ERR1439514 PHESPV0725 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439514 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439514 0c9e928f85edb4c8f5c8f406bb1c793f;d59732ab2f568dfe93b565abaab71cb4 1313 132626194 ccb7dc6fdccf89330566d5e79b9baaa4;e7b73f46b2206ada604877fec6d3c23e SAMEA4023783 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439514/ERR1439514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439514/ERR1439514_2.fastq.gz 1587822 WGS PHESPV0725 RANDOM 88043689;93246005 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 86d54a6c7acdf9d03582095df95dbbb5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439514/ERR1439514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439514/ERR1439514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439514/PHESPV0725.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439514/PHESPV0725.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439514/ERR1439514_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439514/ERR1439514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439514/PHESPV0725.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439514/PHESPV0725.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93334290;98560542 ERS1194893 ERX1509892 GENOMIC 309856460 2016-06-10 PHESPV0725 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439514/PHESPV0725.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439514/PHESPV0725.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439514 PHESPV0725 ERR1439504 PHESPV0715 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439504 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439504 652c42fc0f89a11a30920644d1dd43a5;454b1cd6ecbcef770069e8b68a6dce12 1313 102870686 3cba553ade8cf31f21b0e3b974b18e2e;2346df7f54860c7dcb35a8779f9c7e17 SAMEA4023773 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439504/ERR1439504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439504/ERR1439504_2.fastq.gz 1235618 WGS PHESPV0715 RANDOM 68892825;72227120 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7bea2fe663176345e65d42501a6abb8e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439504/ERR1439504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439504/ERR1439504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439504/PHESPV0715.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439504/PHESPV0715.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439504/ERR1439504_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439504/ERR1439504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439504/PHESPV0715.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439504/PHESPV0715.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73134009;76512849 ERS1194883 ERX1509882 GENOMIC 241464972 2016-06-10 PHESPV0715 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439504/PHESPV0715.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439504/PHESPV0715.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439504 PHESPV0715 ERR1439547 PHESPV0758 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439547 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439547 06f4fa8b398f0c15a062f27fe6b8a28b;406f7c562dca8e4cb544ad753df7beed 1313 106347867 32c1f3ef404f984456b976f1b89cb4cc;7bbe1ac1bc82b8e35f7fd0e1337b1a27 SAMEA4023816 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439547/ERR1439547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439547/ERR1439547_2.fastq.gz 1228047 WGS PHESPV0758 RANDOM 71186426;73716196 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 27197d0cf6f24aef7935de4bef6ba802 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439547/ERR1439547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439547/ERR1439547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439547/PHESPV0758.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439547/PHESPV0758.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439547/ERR1439547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439547/ERR1439547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439547/PHESPV0758.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439547/PHESPV0758.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75363088;77872438 ERS1194926 ERX1509925 GENOMIC 243616223 2016-06-10 PHESPV0758 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439547/PHESPV0758.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439547/PHESPV0758.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439547 PHESPV0758 ERR1439940 PHESPV1151 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439940 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439940 bf384b1a7533bacd766cbb7c38f00741;41b86bbdfe6263e05f85528909a4803f 1313 95619306 cd123b40fdf5e012e556fce56636eeb6;f8dcb3b108383ece63492fd01bde7f35 SAMEA4024209 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439940/ERR1439940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439940/ERR1439940_2.fastq.gz 1141627 WGS PHESPV1151 RANDOM 64152806;65923091 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8189178bf8f0eaacdd16551d72656332 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439940/ERR1439940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439940/ERR1439940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439940/PHESPV1151.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439940/PHESPV1151.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439940/ERR1439940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439940/ERR1439940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439940/PHESPV1151.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439940/PHESPV1151.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68065855;69815909 ERS1195319 ERX1510318 GENOMIC 226837602 2016-06-10 PHESPV1151 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439940/PHESPV1151.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439940/PHESPV1151.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439940 PHESPV1151 ERR1439913 PHESPV1124 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439913 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439913 1e4ede9bf954e16ddf8b88f1729631cc;ebd0c6d012bbd89a3bf6732d2c2c31ab 1313 149498011 169e1c1215aabbc0e33001bd4e2968b6;4bbc1a3f5a8187850a5d5a7d570959fe SAMEA4024182 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439913/ERR1439913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439913/ERR1439913_2.fastq.gz 1670344 WGS PHESPV1124 RANDOM 100444620;101782224 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline afcd5862f62f42ceaf2e1e2cb1f10329 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439913/ERR1439913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439913/ERR1439913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439913/PHESPV1124.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439913/PHESPV1124.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439913/ERR1439913_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439913/ERR1439913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439913/PHESPV1124.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439913/PHESPV1124.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105939096;107286158 ERS1195292 ERX1510291 GENOMIC 331544665 2016-06-10 PHESPV1124 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439913/PHESPV1124.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439913/PHESPV1124.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439913 PHESPV1124 ERR1439989 PHESPV1200 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439989 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439989 ef2ff89220629c3d9a95db50bec92619;5fee2f546aa5add59edc443e97e8cd9b 1313 135457957 eb61a74b6092e41668fe5503677ae129;0cab0c76a04ebf514a76042d2abaad25 SAMEA4024258 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439989/ERR1439989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439989/ERR1439989_2.fastq.gz 1553931 WGS PHESPV1200 RANDOM 89220534;92792700 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8ffadef42d4db022e1a5f641a839f0b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439989/ERR1439989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439989/ERR1439989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439989/PHESPV1200.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439989/PHESPV1200.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439989/ERR1439989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439989/ERR1439989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439989/PHESPV1200.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439989/PHESPV1200.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94411303;97918574 ERS1195368 ERX1510367 GENOMIC 308480987 2016-06-10 PHESPV1200 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439989/PHESPV1200.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439989/PHESPV1200.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439989 PHESPV1200 ERR1440172 PHESPV1385 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440172 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440172 ff58d1ea9f019e250c00a9d1d517dff8;4e4d9f30df1e909d8196883cf6438584 1313 117521755 f121449986911cf1d751ec3776414ef0;9f1aeeb71d76b3a11b0567efa4ed572b SAMEA4024441 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440172/ERR1440172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440172/ERR1440172_2.fastq.gz 1299061 WGS PHESPV1385 RANDOM 77102153;81369152 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 71d9f10388925cd112bacc9f0810e67a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440172/ERR1440172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440172/ERR1440172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440172/PHESPV1385.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440172/PHESPV1385.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440172/ERR1440172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440172/ERR1440172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440172/PHESPV1385.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440172/PHESPV1385.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81523826;85666054 ERS1195551 ERX1510550 GENOMIC 257404817 2016-06-10 PHESPV1385 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440172/PHESPV1385.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440172/PHESPV1385.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440172 PHESPV1385 ERR1439949 PHESPV1160 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439949 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439949 eb382298e2ac7fb28cd81ee15dd82588;a5e64c37a3e962a45da38f07fbd50bc4 1313 114659484 9179e275e556ebf808d5e5d57908d07e;f0b1a91e9395a981151968661a61e32f SAMEA4024218 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439949/ERR1439949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439949/ERR1439949_2.fastq.gz 1314051 WGS PHESPV1160 RANDOM 74901699;78393632 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9ccee278355d8d97af28506cbad26275 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439949/ERR1439949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439949/ERR1439949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439949/PHESPV1160.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439949/PHESPV1160.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439949/ERR1439949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439949/ERR1439949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439949/PHESPV1160.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439949/PHESPV1160.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79329572;82743768 ERS1195328 ERX1510327 GENOMIC 260763660 2016-06-10 PHESPV1160 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439949/PHESPV1160.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439949/PHESPV1160.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439949 PHESPV1160 ERR1440173 PHESPV1386 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440173 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440173 58b26dd166e9aea98468647d03f6be7e;466d3d1021feb26e47c03f2d26781919 1313 129265646 76ce515de0d30538dc3cc3acab11597d;529b3b287c44ffeb19ab4f7bf8a6beee SAMEA4024442 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440173/ERR1440173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440173/ERR1440173_2.fastq.gz 1455258 WGS PHESPV1386 RANDOM 86019202;89026874 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c076a6e275ddb912947bc07c8452d06c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440173/ERR1440173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440173/ERR1440173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440173/PHESPV1386.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440173/PHESPV1386.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440173/ERR1440173_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440173/ERR1440173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440173/PHESPV1386.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440173/PHESPV1386.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90907122;93800095 ERS1195552 ERX1510551 GENOMIC 288838268 2016-06-10 PHESPV1386 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440173/PHESPV1386.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440173/PHESPV1386.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440173 PHESPV1386 ERR1440522 PHESPV1737 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440522 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440522 1afd6a6662b0700a059060ced62900d6;99550525c02fe708bb8e8bf30fa61fd6 1313 111172012 de21f99629253342d1dba5135d0f1d68;18a4227bdf50bcbd61951695bb0bd426 SAMEA4024791 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440522/ERR1440522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440522/ERR1440522_2.fastq.gz 1302648 WGS PHESPV1737 RANDOM 81452691;82537902 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c938bcb51201bef7dda7af2f11096fc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440522/ERR1440522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440522/ERR1440522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440522/PHESPV1737.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440522/PHESPV1737.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440522/ERR1440522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440522/ERR1440522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440522/PHESPV1737.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440522/PHESPV1737.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78287689;79325047 ERS1195901 ERX1510900 GENOMIC 257307823 2016-06-10 PHESPV1737 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440522/PHESPV1737.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440522/PHESPV1737.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440522 PHESPV1737 ERR1440224 PHESPV1438 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440224 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440224 055cdffd98a396dda5e05dc5cd55c3fd;dfc942b9a8995cdcf75042ec56088067 1313 186282630 85599d842674e79e3e8e3f60f7d05be3;f49c5f74959defdbec1ff192f83a5274 SAMEA4024493 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440224/ERR1440224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440224/ERR1440224_2.fastq.gz 2233998 WGS PHESPV1438 RANDOM 124176546;130866160 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9678a75dadbebc7e99fa3c6c66154aea ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440224/ERR1440224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440224/ERR1440224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440224/PHESPV1438.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440224/PHESPV1438.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440224/ERR1440224_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440224/ERR1440224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440224/PHESPV1438.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440224/PHESPV1438.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131163928;137783421 ERS1195603 ERX1510602 GENOMIC 443517148 2016-06-10 PHESPV1438 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440224/PHESPV1438.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440224/PHESPV1438.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440224 PHESPV1438 ERR1440293 PHESPV1508 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440293 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440293 faa36320ff033c2795626a037fb0d859;5dc677bdb9ff2e61b30a3a908b7142ce 1313 147700323 372511fef8d4d6c58ff0e60fd8772080;dd082449e7c372e17084282d98d2c44c SAMEA4024562 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440293/ERR1440293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440293/ERR1440293_2.fastq.gz 1772094 WGS PHESPV1508 RANDOM 99447191;103145461 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bfc0e3ad5cf01612fdf2d2862cfbe704 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440293/ERR1440293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440293/ERR1440293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440293/PHESPV1508.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440293/PHESPV1508.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440293/ERR1440293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440293/ERR1440293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440293/PHESPV1508.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440293/PHESPV1508.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105177929;108874133 ERS1195672 ERX1510671 GENOMIC 351984055 2016-06-10 PHESPV1508 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440293/PHESPV1508.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440293/PHESPV1508.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440293 PHESPV1508 ERR1440524 PHESPV1739 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440524 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440524 4c40bf3c750973cdeebb649136cdd014;eae6c0741db7c006df8b7d30b62e09d8 1313 211023437 f1f0cfb8f2a117569a3a47a9cc9a0783;7fbee725cb9414e9519b29a01e0020de SAMEA4024793 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440524/ERR1440524_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440524/ERR1440524_2.fastq.gz 2470792 WGS PHESPV1739 RANDOM 154369439;156239632 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 43eccf5937810299d787ca3167a1d14e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440524/ERR1440524_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440524/ERR1440524_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440524/PHESPV1739.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440524/PHESPV1739.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440524/ERR1440524_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440524/ERR1440524_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440524/PHESPV1739.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440524/PHESPV1739.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 148263724;150085168 ERS1195903 ERX1510902 GENOMIC 489201416 2016-06-10 PHESPV1739 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440524/PHESPV1739.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440524/PHESPV1739.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440524 PHESPV1739 ERR1440526 PHESPV1741 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440526 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440526 2fb853127a76c9357279ac1933d5e6dd;8588b770a469671456e4fba8724f3579 1313 204492956 3eec758b01ade6f536bc2a85a89c2bef;1c1919c633df4b80b82ace0dca5d04af SAMEA4024795 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440526/ERR1440526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440526/ERR1440526_2.fastq.gz 2443404 WGS PHESPV1741 RANDOM 150062055;151552312 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8933e60fdd755773ae5ad8c5c9ae1fca ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440526/ERR1440526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440526/ERR1440526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440526/PHESPV1741.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440526/PHESPV1741.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440526/ERR1440526_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440526/ERR1440526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440526/PHESPV1741.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440526/PHESPV1741.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 143948270;145389636 ERS1195905 ERX1510904 GENOMIC 480553791 2016-06-10 PHESPV1741 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440526/PHESPV1741.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440526/PHESPV1741.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440526 PHESPV1741 ERR1440575 PHESPV1790 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440575 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440575 ec12519152b8e97d192be4144744ef39;ef163c5e6b2b1ed4e8d35fc83c00bb4a 1313 192763561 9b37cbc91e5240f7965f24e8e9c68eb2;d1b1b3c682769ff3fe2c004a6a7039e5 SAMEA4024844 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440575/ERR1440575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440575/ERR1440575_2.fastq.gz 2224679 WGS PHESPV1790 RANDOM 138301521;144423996 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10381e7806f5a44525618ba9d254cd13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440575/ERR1440575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440575/ERR1440575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440575/PHESPV1790.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440575/PHESPV1790.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440575/ERR1440575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440575/ERR1440575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440575/PHESPV1790.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440575/PHESPV1790.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132761766;138820259 ERS1195954 ERX1510953 GENOMIC 439334636 2016-06-10 PHESPV1790 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440575/PHESPV1790.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440575/PHESPV1790.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440575 PHESPV1790 ERR1440532 PHESPV1747 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440532 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440532 9bff482bf1c4f1788dcdbb5e6107319d;77ada1d0a382cab7724f24595ef364b5 1313 198142521 f68ee50847c1b9f451fe061b5d4d0219;13781431d938518545873b9211c97f9c SAMEA4024801 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440532/ERR1440532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440532/ERR1440532_2.fastq.gz 2164757 WGS PHESPV1747 RANDOM 141168507;145884697 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5db1f15f46fa47c7a28b1349a4846864 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440532/ERR1440532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440532/ERR1440532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440532/PHESPV1747.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440532/PHESPV1747.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440532/ERR1440532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440532/ERR1440532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440532/PHESPV1747.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440532/PHESPV1747.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135613927;140313693 ERS1195911 ERX1510910 GENOMIC 425255243 2016-06-10 PHESPV1747 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440532/PHESPV1747.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440532/PHESPV1747.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440532 PHESPV1747 ERR1438816 PHESPV0026 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438816 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438816 b1e146ffb9cc1cb7421f1da8a714692c;4b747b86682028a5b30825e6bf38fbf8 1313 118402586 e78c64151e0ba5628d694e2690cdce54;a83c4964116edb7f81621afba8d690dd SAMEA4023085 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438816/ERR1438816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438816/ERR1438816_2.fastq.gz 1460627 WGS PHESPV0026 RANDOM 80330182;82583391 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4917b59867f241f3673e2b32c5c59501 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438816/ERR1438816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438816/ERR1438816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438816/PHESPV0026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438816/PHESPV0026.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438816/ERR1438816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438816/ERR1438816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438816/PHESPV0026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438816/PHESPV0026.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85165694;87358880 ERS1194195 ERX1509194 GENOMIC 290334662 2016-06-10 PHESPV0026 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438816/PHESPV0026.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438816/PHESPV0026.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438816 PHESPV0026 ERR1439616 PHESPV0827 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439616 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439616 5407228585262040ae82eda96011dd7e;4d3613e9a8c7246e0030c90e25873f9e 1313 132401660 64d1293df373b0ed8d3c397b6e9293dc;7d46e3baffcf01ee5b00f7f1b7660e1f SAMEA4023885 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439616/ERR1439616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439616/ERR1439616_2.fastq.gz 1470127 WGS PHESPV0827 RANDOM 86362542;89142476 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b9f2536d30229c5d66285f267d00a09b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439616/ERR1439616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439616/ERR1439616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439616/PHESPV0827.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439616/PHESPV0827.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439616/ERR1439616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439616/ERR1439616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439616/PHESPV0827.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439616/PHESPV0827.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91183475;93885336 ERS1194995 ERX1509994 GENOMIC 290190387 2016-06-10 PHESPV0827 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439616/PHESPV0827.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439616/PHESPV0827.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439616 PHESPV0827 ERR1438818 PHESPV0028 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438818 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438818 d29145065cbc22dddf9dcc5c58c67a78;874ed7f8bb9ba1c6969a8db7f061eefd 1313 76515519 0c7ffb3a949ddd4c07d33a53120638cd;0857226dd37760c9d6b43e80c74cfb91 SAMEA4023087 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438818/ERR1438818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438818/ERR1438818_2.fastq.gz 876065 WGS PHESPV0028 RANDOM 50782632;53030015 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7eb2b2409ca20511fd7affbb6816bd49 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438818/ERR1438818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438818/ERR1438818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438818/PHESPV0028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438818/PHESPV0028.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438818/ERR1438818_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438818/ERR1438818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438818/PHESPV0028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438818/PHESPV0028.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 53856075;56081105 ERS1194197 ERX1509196 GENOMIC 173672379 2016-06-10 PHESPV0028 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438818/PHESPV0028.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438818/PHESPV0028.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438818 PHESPV0028 ERR1438990 PHESPV0201 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438990 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438990 5ed783ecaff559dad95813b66a490b2a;044fd4548ed65e0d5b39cfb030bb36f7 1313 117116817 c66782cc2a642efaa6cf5c6ee770ec53;0950fa11e99e59e492c2e2eba7a9c736 SAMEA4023259 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438990/ERR1438990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438990/ERR1438990_2.fastq.gz 1326078 WGS PHESPV0201 RANDOM 76429765;80963829 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5432cea634034ef13eff39d0e47bfd29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438990/ERR1438990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438990/ERR1438990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438990/PHESPV0201.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438990/PHESPV0201.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438990/ERR1438990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438990/ERR1438990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438990/PHESPV0201.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438990/PHESPV0201.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80902329;85375148 ERS1194369 ERX1509368 GENOMIC 262491797 2016-06-10 PHESPV0201 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438990/PHESPV0201.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438990/PHESPV0201.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438990 PHESPV0201 ERR1438992 PHESPV0203 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438992 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438992 2e55f198d888530a8194e99fea81ba27;f69bc811c5efb3a400521a3e277e3779 1313 70835868 f9a4e27b15eb8be09f54b958b6145e2d;2f3024d4ae09fef354b22a41556ea4dc SAMEA4023261 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438992/ERR1438992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438992/ERR1438992_2.fastq.gz 804654 WGS PHESPV0203 RANDOM 47121877;49039597 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7e52e509d49384a83e9190ac024074af ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438992/ERR1438992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438992/ERR1438992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438992/PHESPV0203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438992/PHESPV0203.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438992/ERR1438992_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438992/ERR1438992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438992/PHESPV0203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438992/PHESPV0203.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49988241;51884083 ERS1194371 ERX1509370 GENOMIC 159533506 2016-06-10 PHESPV0203 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438992/PHESPV0203.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438992/PHESPV0203.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438992 PHESPV0203 ERR1439280 PHESPV0491 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439280 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439280 cf03374ff3f404c4e4e0b0bddfc01f27;112f7b4ac0e1acb54e113a909044b80f 1313 157985806 b11381317c9f6dcf741c9036b0a4d1cd;93768687f725a005f378c3012fb689fd SAMEA4023549 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439280/ERR1439280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439280/ERR1439280_2.fastq.gz 1758519 WGS PHESPV0491 RANDOM 103684402;106554588 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d422a317e14994df67b0812ab81cc963 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439280/ERR1439280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439280/ERR1439280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439280/PHESPV0491.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439280/PHESPV0491.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439280/ERR1439280_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439280/ERR1439280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439280/PHESPV0491.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439280/PHESPV0491.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109344459;112172669 ERS1194659 ERX1509658 GENOMIC 347442420 2016-06-10 PHESPV0491 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439280/PHESPV0491.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439280/PHESPV0491.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439280 PHESPV0491 ERR1440121 PHESPV1332 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440121 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440121 cd9c6f71ca59888700ecb4ae8a46ffca;570cdd0f0af0777cebc5fb61f578d9be 1313 170734656 a4fa9b8262e7b34676313379d90918bd;e33b99ad0397aa137d44549728453f97 SAMEA4024390 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440121/ERR1440121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440121/ERR1440121_2.fastq.gz 1941909 WGS PHESPV1332 RANDOM 113529059;117722996 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 94cf8276f248cf4d965ac256f94f1f08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440121/ERR1440121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440121/ERR1440121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440121/PHESPV1332.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440121/PHESPV1332.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440121/ERR1440121_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440121/ERR1440121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440121/PHESPV1332.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440121/PHESPV1332.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119802727;123894848 ERS1195500 ERX1510499 GENOMIC 385644703 2016-06-10 PHESPV1332 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440121/PHESPV1332.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440121/PHESPV1332.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440121 PHESPV1332 ERR1440233 PHESPV1447 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440233 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440233 e7e86aa5954a6c1b7a5907b3790fb0de;a5a11152752f8ce33102ef456143db54 1313 167106515 d874cf25de2b51135227597bdabe2f3b;a92e6f8d4b5b78e87c9188acf2b66192 SAMEA4024502 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440233/ERR1440233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440233/ERR1440233_2.fastq.gz 1816881 WGS PHESPV1447 RANDOM 111451892;113882478 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 946966423cdbe807c45110b40b7013d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440233/ERR1440233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440233/ERR1440233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440233/PHESPV1447.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440233/PHESPV1447.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440233/ERR1440233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440233/ERR1440233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440233/PHESPV1447.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440233/PHESPV1447.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117376190;119777040 ERS1195612 ERX1510611 GENOMIC 359310336 2016-06-10 PHESPV1447 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440233/PHESPV1447.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440233/PHESPV1447.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440233 PHESPV1447 ERR1440733 PHESPV1948 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440733 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440733 571e4ec66c561a560554dd3b419d3cf9;ab4ec8e7dd152d098c52e833cd23d9f9 1313 119620990 14c241ca9d52a2a005f13f59d7dbea12;39bd8a42f61ed650d3a9a2ad1206e29a SAMEA4025002 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440733/ERR1440733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440733/ERR1440733_2.fastq.gz 1318624 WGS PHESPV1948 RANDOM 85298360;88302416 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 291b5c22981efec376017ae317e045bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440733/ERR1440733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440733/ERR1440733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440733/PHESPV1948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440733/PHESPV1948.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440733/ERR1440733_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440733/ERR1440733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440733/PHESPV1948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440733/PHESPV1948.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82002262;84991240 ERS1196112 ERX1511111 GENOMIC 258967890 2016-06-10 PHESPV1948 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440733/PHESPV1948.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440733/PHESPV1948.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440733 PHESPV1948 ERR1440738 PHESPV1953 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440738 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440738 b7815e2851167e4b24511f0e52d73e3e;cb640987fbcdc88920a246da2326e645 1313 162857166 99ede30ee1e2861f12d0a3fb16d4636a;b298c00205f5dc7a5be94ff0cb7da8ea SAMEA4025007 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440738/ERR1440738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440738/ERR1440738_2.fastq.gz 1834428 WGS PHESPV1953 RANDOM 117230709;119407063 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8bb722edfc248e9014196b7a92cdfa34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440738/ERR1440738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440738/ERR1440738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440738/PHESPV1953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440738/PHESPV1953.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440738/ERR1440738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440738/ERR1440738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440738/PHESPV1953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440738/PHESPV1953.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112373401;114546991 ERS1196117 ERX1511116 GENOMIC 354514130 2016-06-10 PHESPV1953 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440738/PHESPV1953.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440738/PHESPV1953.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440738 PHESPV1953 ERR1440737 PHESPV1952 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440737 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440737 d82057f79798dcaba5b8fef71ee7362e;42579f106f45f7123493ab18dd8f9dca 1313 183118138 f414d0695fae5a8a1b5777f93affbb66;883ec785a79b9488c0c7f72716400b8a SAMEA4025006 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440737/ERR1440737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440737/ERR1440737_2.fastq.gz 2066884 WGS PHESPV1952 RANDOM 133023875;133571044 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 82cb8aa720d67afc4f1a5a0e5aff2fb8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440737/ERR1440737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440737/ERR1440737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440737/PHESPV1952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440737/PHESPV1952.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440737/ERR1440737_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440737/ERR1440737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440737/PHESPV1952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440737/PHESPV1952.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127686037;128234594 ERS1196116 ERX1511115 GENOMIC 404172505 2016-06-10 PHESPV1952 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440737/PHESPV1952.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440737/PHESPV1952.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440737 PHESPV1952 ERR1440743 PHESPV1958 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440743 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440743 eeade1bfa23a01ccf5659b90891396cf;710cd9a3164ce04d16f1020289804404 1313 160404320 00d436e7fadfea5a374cefe87bfbfd2c;ec927ec41b002c66c3151174fa691be7 SAMEA4025012 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440743/ERR1440743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440743/ERR1440743_2.fastq.gz 1837195 WGS PHESPV1958 RANDOM 115750238;117561807 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6801405495db91b1dbfc79dd0ebecd36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440743/ERR1440743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440743/ERR1440743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440743/PHESPV1958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440743/PHESPV1958.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440743/ERR1440743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440743/ERR1440743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440743/PHESPV1958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440743/PHESPV1958.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110909970;112724627 ERS1196122 ERX1511121 GENOMIC 349738986 2016-06-10 PHESPV1958 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440743/PHESPV1958.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440743/PHESPV1958.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440743 PHESPV1958 ERR1440744 PHESPV1959 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440744 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440744 c5d332170c523c6c907315272f5968b8;4c55577a7fc03def94f05e76af5db978 1313 134060910 38085864b1017312f661e543c16232f4;b223770d74e228630e473f46ec7db8f6 SAMEA4025013 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440744/ERR1440744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440744/ERR1440744_2.fastq.gz 1510611 WGS PHESPV1959 RANDOM 97204063;98180161 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d18b5576bc4faeda8a94ab8fca5115ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440744/ERR1440744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440744/ERR1440744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440744/PHESPV1959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440744/PHESPV1959.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440744/ERR1440744_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440744/ERR1440744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440744/PHESPV1959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440744/PHESPV1959.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93326527;94301382 ERS1196123 ERX1511122 GENOMIC 295244569 2016-06-10 PHESPV1959 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440744/PHESPV1959.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440744/PHESPV1959.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440744 PHESPV1959 ERR1440745 PHESPV1960 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440745 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440745 de54980ebf778bcd0a4fc0ad5c086314;c53b3d8af53c547d5af2c27f6acf764b 1313 118895722 64eaa9f32249cf3ee951bb96ec959ae4;b1ab282969a9d252b19c9005c1f234f7 SAMEA4025014 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440745/ERR1440745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440745/ERR1440745_2.fastq.gz 1335408 WGS PHESPV1960 RANDOM 86092960;87149324 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b43771febb339df1a02cf6808d073fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440745/ERR1440745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440745/ERR1440745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440745/PHESPV1960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440745/PHESPV1960.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440745/ERR1440745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440745/ERR1440745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440745/PHESPV1960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440745/PHESPV1960.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82763680;83812246 ERS1196124 ERX1511123 GENOMIC 261684632 2016-06-10 PHESPV1960 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440745/PHESPV1960.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440745/PHESPV1960.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440745 PHESPV1960 ERR1440753 PHESPV1968 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440753 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440753 bd99c79583e58707fcc5242c01fa4d52;6291a0e3f7633aeadddb6f44a9c37753 1313 174350345 3d4829355c89bc6f2e13116f3337da34;ef4d8df75732694a8f8fd9d44d4f5cb8 SAMEA4025022 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440753/ERR1440753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440753/ERR1440753_2.fastq.gz 1974434 WGS PHESPV1968 RANDOM 126665401;127323816 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5599690d28bb9f8ea013307c76aeb3a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440753/ERR1440753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440753/ERR1440753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440753/PHESPV1968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440753/PHESPV1968.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440753/ERR1440753_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440753/ERR1440753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440753/PHESPV1968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440753/PHESPV1968.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121518170;122179937 ERS1196132 ERX1511131 GENOMIC 384736963 2016-06-10 PHESPV1968 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440753/PHESPV1968.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440753/PHESPV1968.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440753 PHESPV1968 ERR1440768 PHESPV1983 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440768 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440768 42b20d1ca67169cea4c51473f250fb25;f673f79ea13cd07ee99f6567e67c0127 1313 117703984 3f0c39f453234a04b3552bf18cf49332;0345403922f3edce195e3c59cf5a8b92 SAMEA4025037 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440768/ERR1440768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440768/ERR1440768_2.fastq.gz 1323815 WGS PHESPV1983 RANDOM 85346633;86170097 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ffcf71dc5276f482a6d3dbe4a1473f6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440768/ERR1440768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440768/ERR1440768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440768/PHESPV1983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440768/PHESPV1983.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440768/ERR1440768_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440768/ERR1440768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440768/PHESPV1983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440768/PHESPV1983.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82045252;82868218 ERS1196147 ERX1511146 GENOMIC 259439622 2016-06-10 PHESPV1983 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440768/PHESPV1983.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440768/PHESPV1983.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440768 PHESPV1983 ERR1440751 PHESPV1966 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440751 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440751 a8105391ac8e26d36697b97270feda25;709917a86460ee250fb2aaeac2ff52c4 1313 139847367 305678dbee2f274960ad1b38bb904923;2275dc66728216c9419a258d7d64c019 SAMEA4025020 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440751/ERR1440751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440751/ERR1440751_2.fastq.gz 1568596 WGS PHESPV1966 RANDOM 101341553;102525800 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a73f505d827cca8da5f6b2b23e1ffea ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440751/ERR1440751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440751/ERR1440751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440751/PHESPV1966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440751/PHESPV1966.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440751/ERR1440751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440751/ERR1440751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440751/PHESPV1966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440751/PHESPV1966.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97292487;98471449 ERS1196130 ERX1511129 GENOMIC 308121738 2016-06-10 PHESPV1966 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440751/PHESPV1966.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440751/PHESPV1966.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440751 PHESPV1966 ERR1440819 PHESPV2034 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440819 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440819 19273bc128b83b5cf1b6be7ac3a6a574;6af2acacfea59c6af473bdec7c040664 1313 165637462 ffac3b12eec7f0276b819fdf1b61a550;f689fda599e933fc0989e5bee5d7761d SAMEA4025088 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440819/ERR1440819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440819/ERR1440819_2.fastq.gz 1806053 WGS PHESPV2034 RANDOM 119273817;120467169 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 20ca587f86637f1cc68702febe60f455 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440819/ERR1440819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440819/ERR1440819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440819/PHESPV2034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440819/PHESPV2034.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440819/ERR1440819_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440819/ERR1440819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440819/PHESPV2034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440819/PHESPV2034.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114537796;115741183 ERS1196198 ERX1511197 GENOMIC 352562201 2016-06-10 PHESPV2034 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440819/PHESPV2034.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440819/PHESPV2034.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440819 PHESPV2034 ERR1440821 PHESPV2036 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440821 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440821 35476c9ebd921957d0e013bd7fbf6857;4a0f27fe32462fdb2217d58f53f97338 1313 188678049 230133c4a46f78ef77db4cd0230361be;66d8238913545ad845b2d1275be6c25d SAMEA4025090 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440821/ERR1440821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440821/ERR1440821_2.fastq.gz 2088735 WGS PHESPV2036 RANDOM 135648302;137227270 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b93f2ffc01196b5b27eb1a137af60ff5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440821/ERR1440821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440821/ERR1440821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440821/PHESPV2036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440821/PHESPV2036.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440821/ERR1440821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440821/ERR1440821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440821/PHESPV2036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440821/PHESPV2036.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130265705;131859190 ERS1196200 ERX1511199 GENOMIC 403301672 2016-06-10 PHESPV2036 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440821/PHESPV2036.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440821/PHESPV2036.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440821 PHESPV2036 ERR1440825 PHESPV2040 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440825 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440825 776b9ebac37feaff0ecd5f963ba1f6d4;a01a1c694274161335c8481778d9d131 1313 188859491 851698996c0d8ac7583e97ed2f5e35ed;24aba4e35f2ee7dd56258d3aacfdd19f SAMEA4025094 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440825/ERR1440825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440825/ERR1440825_2.fastq.gz 2035849 WGS PHESPV2040 RANDOM 134016002;138212118 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d5361e2136376e19bc892810c99802d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440825/ERR1440825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440825/ERR1440825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440825/PHESPV2040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440825/PHESPV2040.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440825/ERR1440825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440825/ERR1440825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440825/PHESPV2040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440825/PHESPV2040.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128720986;132905544 ERS1196204 ERX1511203 GENOMIC 397412697 2016-06-10 PHESPV2040 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440825/PHESPV2040.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440825/PHESPV2040.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440825 PHESPV2040 ERR1439638 PHESPV0849 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439638 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439638 40a1e39bf13b3e323ccb821b19269814;10f7f0c1b64d7c029de3a9818f2562dc 1313 115281782 8cf4166c8a9b36c3c725e82a1ec48d6c;ac9d2ba67564414dca1c08e3fcd0c867 SAMEA4023907 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439638/ERR1439638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439638/ERR1439638_2.fastq.gz 1272774 WGS PHESPV0849 RANDOM 80159597;80799529 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 88b0b23fe9ecd66a01e8d061e58808c6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439638/ERR1439638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439638/ERR1439638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439638/PHESPV0849.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439638/PHESPV0849.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439638/ERR1439638_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439638/ERR1439638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439638/PHESPV0849.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439638/PHESPV0849.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76977757;77639756 ERS1195017 ERX1510016 GENOMIC 232217469 2016-06-10 PHESPV0849 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439638/PHESPV0849.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439638/PHESPV0849.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439638 PHESPV0849 ERR1438794 PHESPV0004 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438794 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438794 b073ad2ce1aa287d3a0ae44236df4ea9;1fe65061ef00a21b7ac56902a8ab1882 1313 92522424 66030ffce8eff069b0770d15e6ca5c51;dc9db78128ec0f4cd35db8fe17653dbc SAMEA4023063 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438794/ERR1438794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438794/ERR1438794_2.fastq.gz 1124558 WGS PHESPV0004 RANDOM 62668384;64065250 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8b6370d36be856fdff3c596415ac42bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438794/ERR1438794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438794/ERR1438794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438794/PHESPV0004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438794/PHESPV0004.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438794/ERR1438794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438794/ERR1438794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438794/PHESPV0004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438794/PHESPV0004.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66544190;67963598 ERS1194173 ERX1509172 GENOMIC 219230518 2016-06-10 PHESPV0004 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438794/PHESPV0004.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438794/PHESPV0004.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438794 PHESPV0004 ERR1438874 PHESPV0084 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438874 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438874 a649d758204e2ea4497eaa9bf2d3001a;ad711ca6eab79ddbe4ab5c0ece93105b 1313 88714581 a20353e3cae7de37378726164c4abcc1;97f11e6f14b50e2702ea24188674740d SAMEA4023143 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438874/ERR1438874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438874/ERR1438874_2.fastq.gz 1027987 WGS PHESPV0084 RANDOM 58533286;62369494 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dfb782c7877617b414de1956349c5ac9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438874/ERR1438874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438874/ERR1438874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438874/PHESPV0084.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438874/PHESPV0084.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438874/ERR1438874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438874/ERR1438874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438874/PHESPV0084.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438874/PHESPV0084.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62085806;65875519 ERS1194253 ERX1509252 GENOMIC 204183334 2016-06-10 PHESPV0084 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438874/PHESPV0084.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438874/PHESPV0084.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438874 PHESPV0084 ERR1438894 PHESPV0104 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438894 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438894 067bb8863327a00a7c71456fd193bc0b;75021dbd618f9558bbb88e4b38f61ef4 1313 123969445 74e89ac580c4f811477217b19905a120;d05ee7f380542ed6adc803100c0fe9ee SAMEA4023163 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438894/ERR1438894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438894/ERR1438894_2.fastq.gz 1454868 WGS PHESPV0104 RANDOM 82722437;86505882 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3714efcb30c52016000c0f3c7a955190 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438894/ERR1438894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438894/ERR1438894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438894/PHESPV0104.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438894/PHESPV0104.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438894/ERR1438894_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438894/ERR1438894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438894/PHESPV0104.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438894/PHESPV0104.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87554215;91310279 ERS1194273 ERX1509272 GENOMIC 289235491 2016-06-10 PHESPV0104 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438894/PHESPV0104.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438894/PHESPV0104.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438894 PHESPV0104 ERR1438909 PHESPV0119 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438909 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438909 6611b7c61061ef49f5463ab652d56ad7;d17a2b3d4222050f3844225fdb66d3b6 1313 181059456 eb0d06cd81fb696109cc9ba48084c2f4;c81bf0e06c164552202d45fbdaa26b1f SAMEA4023178 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438909/ERR1438909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438909/ERR1438909_2.fastq.gz 2014641 WGS PHESPV0119 RANDOM 121186900;123903702 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a81cc202ee8032ee9947b1230c248851 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438909/ERR1438909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438909/ERR1438909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438909/PHESPV0119.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438909/PHESPV0119.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438909/ERR1438909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438909/ERR1438909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438909/PHESPV0119.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438909/PHESPV0119.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127664812;130390888 ERS1194288 ERX1509287 GENOMIC 399735582 2016-06-10 PHESPV0119 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438909/PHESPV0119.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438909/PHESPV0119.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438909 PHESPV0119 ERR1438895 PHESPV0105 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438895 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438895 1afd0b7fde99fdcf94a9e86f6d732a11;dc3abbda5da9d401f3e14226845e66ff 1313 108162456 a0b9e24eb70f9fc5ad812cd0f6ab1267;1bdce3f337c01292ce2504574c70e746 SAMEA4023164 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438895/ERR1438895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438895/ERR1438895_2.fastq.gz 1262085 WGS PHESPV0105 RANDOM 71989845;75687838 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 601d59be7f48a6f5ff0e19ad5d738f96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438895/ERR1438895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438895/ERR1438895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438895/PHESPV0105.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438895/PHESPV0105.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438895/ERR1438895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438895/ERR1438895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438895/PHESPV0105.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438895/PHESPV0105.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76267508;79930668 ERS1194274 ERX1509273 GENOMIC 250890945 2016-06-10 PHESPV0105 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438895/PHESPV0105.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438895/PHESPV0105.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438895 PHESPV0105 ERR1438919 PHESPV0129 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438919 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438919 d1a5df5f2da9410246f282069fecfba8;088c50570c0d1544f63c8b888274a009 1313 153750170 440a9d05191026b2b176fbc440dc66c2;bef74d75f0240241ba239a4ee5918e17 SAMEA4023188 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438919/ERR1438919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438919/ERR1438919_2.fastq.gz 1718183 WGS PHESPV0129 RANDOM 102461460;105665679 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a284063cfa620e55c62396e4d42a5e88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438919/ERR1438919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438919/ERR1438919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438919/PHESPV0129.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438919/PHESPV0129.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438919/ERR1438919_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438919/ERR1438919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438919/PHESPV0129.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438919/PHESPV0129.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108086324;111289445 ERS1194298 ERX1509297 GENOMIC 340968216 2016-06-10 PHESPV0129 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438919/PHESPV0129.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438919/PHESPV0129.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438919 PHESPV0129 ERR1438930 PHESPV0140 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438930 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438930 d273b7cbb1a2da2f6773c53c83668fa2;be49f6f2a9adf785c3b30f6d155b5ada 1313 208298470 07c78e98a7e26cbab1b7df6901f2c744;dc45eb846fead148e8e60e27ff2df3ef SAMEA4023199 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438930/ERR1438930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438930/ERR1438930_2.fastq.gz 2335395 WGS PHESPV0140 RANDOM 140125120;142139635 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 638e9723035b70534d3058b415b5211c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438930/ERR1438930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438930/ERR1438930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438930/PHESPV0140.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438930/PHESPV0140.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438930/ERR1438930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438930/ERR1438930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438930/PHESPV0140.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438930/PHESPV0140.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 147444597;149472080 ERS1194309 ERX1509308 GENOMIC 463828182 2016-06-10 PHESPV0140 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438930/PHESPV0140.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438930/PHESPV0140.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438930 PHESPV0140 ERR1438932 PHESPV0142 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438932 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438932 584f2958a653317f0c135b3ce49bfc39;2d9ef0ba3a96c8b7e6807852144b8db8 1313 187771453 87c93fa4706ed07adda97b80d75135aa;d16aa3ae92aab81e8a704e4c36522266 SAMEA4023201 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438932/ERR1438932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438932/ERR1438932_2.fastq.gz 2101055 WGS PHESPV0142 RANDOM 126004227;128654977 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5288250b08cc696375f17bf8722ac4f3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438932/ERR1438932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438932/ERR1438932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438932/PHESPV0142.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438932/PHESPV0142.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438932/ERR1438932_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438932/ERR1438932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438932/PHESPV0142.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438932/PHESPV0142.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132676095;135335735 ERS1194311 ERX1509310 GENOMIC 417125336 2016-06-10 PHESPV0142 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438932/PHESPV0142.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438932/PHESPV0142.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438932 PHESPV0142 ERR1438940 PHESPV0150 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438940 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438940 6ac9963a08bc3b53f3d1802a8b52ac7d;947eed4763319b261cdd7f1b4f88e481 1313 148143625 7c5aabf8560075dc45aa01256c27430e;d642f11626921f8e18fa926b2237a66c SAMEA4023209 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438940/ERR1438940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438940/ERR1438940_2.fastq.gz 1649067 WGS PHESPV0150 RANDOM 98877104;101649363 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cb4971f123b374fb79dd60f2d8faaa8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438940/ERR1438940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438940/ERR1438940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438940/PHESPV0150.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438940/PHESPV0150.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438940/ERR1438940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438940/ERR1438940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438940/PHESPV0150.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438940/PHESPV0150.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104313679;107094072 ERS1194319 ERX1509318 GENOMIC 327202956 2016-06-10 PHESPV0150 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438940/PHESPV0150.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438940/PHESPV0150.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438940 PHESPV0150 ERR1439405 PHESPV0616 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439405 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439405 3f6ca1da9e2588336e93cfd016fd22e1;0a4f511971a6e6008a77f5a2e3c8f9f1 1313 109402651 8c07e6f6a5092b15e80ddef093d4accb;2f654634966f080217ff0f92b28c984b SAMEA4023674 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439405/ERR1439405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439405/ERR1439405_2.fastq.gz 1194769 WGS PHESPV0616 RANDOM 78288438;79900247 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be3ee2562c32ab894424fc814028c97e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439405/ERR1439405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439405/ERR1439405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439405/PHESPV0616.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439405/PHESPV0616.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439405/ERR1439405_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439405/ERR1439405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439405/PHESPV0616.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439405/PHESPV0616.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75305261;76925626 ERS1194784 ERX1509783 GENOMIC 233990771 2016-06-10 PHESPV0616 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439405/PHESPV0616.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439405/PHESPV0616.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439405 PHESPV0616 ERR1439352 PHESPV0563 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439352 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439352 39e1f1809cf9c33afacb5a0ce5799e13;4421d16969a577ccb835213c483d7768 1313 290758063 c9b9c31bd3e4b2e09f04ec1072b4ddc0;12e29bb22b5e1d95cedeeb6046c845ce SAMEA4023621 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439352/ERR1439352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439352/ERR1439352_2.fastq.gz 3249890 WGS PHESPV0563 RANDOM 192172162;198653062 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 646e468aaca6c77752ad23487c6e3f1f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439352/ERR1439352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439352/ERR1439352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439352/PHESPV0563.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439352/PHESPV0563.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439352/ERR1439352_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439352/ERR1439352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439352/PHESPV0563.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439352/PHESPV0563.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 201964712;208414473 ERS1194731 ERX1509730 GENOMIC 642881273 2016-06-10 PHESPV0563 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439352/PHESPV0563.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439352/PHESPV0563.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439352 PHESPV0563 ERR1439629 PHESPV0840 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439629 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439629 e56229ffd3b3c2d5b91f47c11c6640b5;2ab49bd4a3f594e0213294a09f2dc50a 1313 159252472 917a08c65b3e2ccbd2dca1ee19c29c11;f3402ba6e317215f7f7bda29f428369a SAMEA4023898 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439629/ERR1439629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439629/ERR1439629_2.fastq.gz 1770958 WGS PHESPV0840 RANDOM 103326412;106483799 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c3bdac84d39bb043fb7b4f50b0046366 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439629/ERR1439629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439629/ERR1439629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439629/PHESPV0840.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439629/PHESPV0840.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439629/ERR1439629_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439629/ERR1439629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439629/PHESPV0840.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439629/PHESPV0840.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108977290;112086037 ERS1195008 ERX1510007 GENOMIC 349363536 2016-06-10 PHESPV0840 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439629/PHESPV0840.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439629/PHESPV0840.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439629 PHESPV0840 ERR1439927 PHESPV1138 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439927 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439927 959b659a32782a47a659e91b0ce670fd;ccc0c07f157bbaf45cd4d356184d2c13 1313 170631413 c5d8cd6260b14520c7a8ec244a19d04d;96adb7656f5ddd8cd63da64094a08497 SAMEA4024196 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439927/ERR1439927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439927/ERR1439927_2.fastq.gz 2041653 WGS PHESPV1138 RANDOM 114880000;118900352 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5b20d3cc1e92b6368420739cc3f83324 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439927/ERR1439927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439927/ERR1439927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439927/PHESPV1138.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439927/PHESPV1138.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439927/ERR1439927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439927/ERR1439927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439927/PHESPV1138.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439927/PHESPV1138.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121346031;125376107 ERS1195306 ERX1510305 GENOMIC 406184782 2016-06-10 PHESPV1138 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439927/PHESPV1138.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439927/PHESPV1138.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439927 PHESPV1138 ERR1439923 PHESPV1134 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439923 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439923 465bf0d679fd637eca7ef0e43ec3701b;725d71aca233f15507022eacbed7bb01 1313 119998702 0c4b12f81a1da7ebfaeff4cb3489b48a;61bc9357cf9a7f4ce20044a1fed9d51e SAMEA4024192 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439923/ERR1439923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439923/ERR1439923_2.fastq.gz 1427913 WGS PHESPV1134 RANDOM 80721451;83260096 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 539a32c54077b4e9083e7b500faf8073 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439923/ERR1439923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439923/ERR1439923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439923/PHESPV1134.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439923/PHESPV1134.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439923/ERR1439923_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439923/ERR1439923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439923/PHESPV1134.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439923/PHESPV1134.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85493151;88018189 ERS1195302 ERX1510301 GENOMIC 283853646 2016-06-10 PHESPV1134 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439923/PHESPV1134.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439923/PHESPV1134.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439923 PHESPV1134 ERR1439594 PHESPV0805 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439594 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439594 2e9105bf4519baba1f6e25b3a7d1e806;69300e6f8b920009a950268c8e857ff4 1313 185750963 2beeaaaa82527d248e79de09ac7aeb85;4e602e85ffa541ebda87e756ca3d491a SAMEA4023863 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439594/ERR1439594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439594/ERR1439594_2.fastq.gz 2071281 WGS PHESPV0805 RANDOM 122114606;125577661 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e7946809244943fb2790ec2b1aecde42 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439594/ERR1439594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439594/ERR1439594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439594/PHESPV0805.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439594/PHESPV0805.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439594/ERR1439594_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439594/ERR1439594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439594/PHESPV0805.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439594/PHESPV0805.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128633857;132052706 ERS1194973 ERX1509972 GENOMIC 409247610 2016-06-10 PHESPV0805 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439594/PHESPV0805.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439594/PHESPV0805.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439594 PHESPV0805 ERR1439979 PHESPV1190 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439979 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439979 819a1eaf3bea072fb5d408fb9cb79ecc;409c1c95c62ac7b8b4685bd799a35aa3 1313 89023339 e4a7ba5279f141784a0b1cb443451a35;15ff7e16785604186911d6482bbc901e SAMEA4024248 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439979/ERR1439979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439979/ERR1439979_2.fastq.gz 1027033 WGS PHESPV1190 RANDOM 59026309;61388170 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 09c0ad00f5f7d3fb85a603a771610d72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439979/ERR1439979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439979/ERR1439979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439979/PHESPV1190.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439979/PHESPV1190.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439979/ERR1439979_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439979/ERR1439979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439979/PHESPV1190.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439979/PHESPV1190.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62578998;64885204 ERS1195358 ERX1510357 GENOMIC 203929198 2016-06-10 PHESPV1190 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439979/PHESPV1190.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439979/PHESPV1190.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439979 PHESPV1190 ERR1440042 PHESPV1253 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440042 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440042 772efe221035643b01089d8063a44c41;1bd6cb3026feef0c31225dffaa240c57 1313 136190072 87b311b5568d88680333f34807db3ec5;4009a0cfa8f6c5be6927f7a18c06308a SAMEA4024311 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440042/ERR1440042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440042/ERR1440042_2.fastq.gz 1490236 WGS PHESPV1253 RANDOM 89623379;94241654 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e0cb74725435ddaf0264441304ea2462 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440042/ERR1440042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440042/ERR1440042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440042/PHESPV1253.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440042/PHESPV1253.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440042/ERR1440042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440042/ERR1440042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440042/PHESPV1253.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440042/PHESPV1253.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94575568;99115893 ERS1195421 ERX1510420 GENOMIC 294658270 2016-06-10 PHESPV1253 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440042/PHESPV1253.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440042/PHESPV1253.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440042 PHESPV1253 ERR1440103 PHESPV1314 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440103 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440103 c7bf1fb5fe64faa5466fd480852db818;638bc18284900a04d320daeedba6bd9f 1313 106724287 7bcd82f40ab7b9cf815cfa6c20f5b9a0;4949d4199f36aeb286b4fe32070926d5 SAMEA4024372 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440103/ERR1440103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440103/ERR1440103_2.fastq.gz 1197463 WGS PHESPV1314 RANDOM 71120128;73540384 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1aed3af33196aa9e15aa2f934100c2df ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440103/ERR1440103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440103/ERR1440103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440103/PHESPV1314.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440103/PHESPV1314.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440103/ERR1440103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440103/ERR1440103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440103/PHESPV1314.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440103/PHESPV1314.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75246381;77575759 ERS1195482 ERX1510481 GENOMIC 237709285 2016-06-10 PHESPV1314 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440103/PHESPV1314.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440103/PHESPV1314.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440103 PHESPV1314 ERR1440130 PHESPV1342 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440130 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440130 55a7b1300afa80d820e50fc22f5bde12;24d2a149476a06d4b01892be4f037737 1313 117552259 61a1d494d79720a994ad3589f201fbe1;ad314470cac4832bc5aff3cfec432ff4 SAMEA4024399 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440130/ERR1440130_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440130/ERR1440130_2.fastq.gz 1328102 WGS PHESPV1342 RANDOM 78110242;81234410 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 527bec3568d9394372995741ebb9b44f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440130/ERR1440130_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440130/ERR1440130_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440130/PHESPV1342.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440130/PHESPV1342.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440130/ERR1440130_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440130/ERR1440130_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440130/PHESPV1342.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440130/PHESPV1342.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82622691;85645364 ERS1195509 ERX1510508 GENOMIC 263689550 2016-06-10 PHESPV1342 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440130/PHESPV1342.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440130/PHESPV1342.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440130 PHESPV1342 ERR1440066 PHESPV1277 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440066 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440066 4e5026b3359563973e7941c50250a98d;135cc9ffb45c28c9f1410fc349baa59c 1313 125501987 2c1f89ed24c3aa1644e1c4878a5fb6cc;c7fb00340c89079443d79e9ab8d2008c SAMEA4024335 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440066/ERR1440066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440066/ERR1440066_2.fastq.gz 1415034 WGS PHESPV1277 RANDOM 81561937;87490882 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4b9093ff88411b772df039c63babbfd2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440066/ERR1440066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440066/ERR1440066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440066/PHESPV1277.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440066/PHESPV1277.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440066/ERR1440066_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440066/ERR1440066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440066/PHESPV1277.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440066/PHESPV1277.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86262729;92119533 ERS1195445 ERX1510444 GENOMIC 280527380 2016-06-10 PHESPV1277 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440066/PHESPV1277.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440066/PHESPV1277.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440066 PHESPV1277 ERR1440136 PHESPV1349 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440136 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440136 addb1a920a14c9f5b1e5c76c7dadbadb;47aafd78d55bd801ba775ee3e4a28157 1313 133467841 c7a37d09e6e609c1c8cce6a7142032a0;6f56c339f45f84be81b9d3c2421cc224 SAMEA4024405 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440136/ERR1440136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440136/ERR1440136_2.fastq.gz 1508299 WGS PHESPV1349 RANDOM 88867608;91941083 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bf1c5ec916c37b6c87ad09e30e5b14c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440136/ERR1440136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440136/ERR1440136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440136/PHESPV1349.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440136/PHESPV1349.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440136/ERR1440136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440136/ERR1440136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440136/PHESPV1349.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440136/PHESPV1349.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93935753;96907353 ERS1195515 ERX1510514 GENOMIC 299450795 2016-06-10 PHESPV1349 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440136/PHESPV1349.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440136/PHESPV1349.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440136 PHESPV1349 ERR1440153 PHESPV1366 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440153 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440153 08e31666363db536216c424e427fb369;212df67f72c71cc10b7c64a358d1f667 1313 129903993 c02c3838a78a19f95341251e3e80e119;748d3470bc26700b4118bd15b34c36e9 SAMEA4024422 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440153/ERR1440153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440153/ERR1440153_2.fastq.gz 1529356 WGS PHESPV1366 RANDOM 86642780;90672785 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 25ec8c95cb318db1f6296bb257069a42 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440153/ERR1440153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440153/ERR1440153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440153/PHESPV1366.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440153/PHESPV1366.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440153/ERR1440153_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440153/ERR1440153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440153/PHESPV1366.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440153/PHESPV1366.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91713722;95608600 ERS1195532 ERX1510531 GENOMIC 303556403 2016-06-10 PHESPV1366 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440153/PHESPV1366.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440153/PHESPV1366.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440153 PHESPV1366 ERR1440161 PHESPV1374 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440161 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440161 fc2f702ad320d9c1b9657bf5f41530c4;d00fe07511d3bb9f3cd48a9bad0222eb 1313 91374068 ecede8638ef6213987f5db3249da80ff;efcbad4d0e28a2871eeab28c57e80a8f SAMEA4024430 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440161/ERR1440161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440161/ERR1440161_2.fastq.gz 1039189 WGS PHESPV1374 RANDOM 60694816;63375968 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e6746203301aef31889c98288f24c55a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440161/ERR1440161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440161/ERR1440161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440161/PHESPV1374.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440161/PHESPV1374.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440161/ERR1440161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440161/ERR1440161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440161/PHESPV1374.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440161/PHESPV1374.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64337059;66923001 ERS1195540 ERX1510539 GENOMIC 206350216 2016-06-10 PHESPV1374 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440161/PHESPV1374.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440161/PHESPV1374.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440161 PHESPV1374 ERR1440167 PHESPV1380 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440167 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440167 c770add42bbc5f2ad0d7bf77d563edf3;13153d1620147572b46dff8e12b637e8 1313 96750937 e4032f7b1b6a40e836f7b87d8549c241;6c50c17f63277d867146b46b18239da7 SAMEA4024436 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440167/ERR1440167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440167/ERR1440167_2.fastq.gz 1080599 WGS PHESPV1380 RANDOM 64248300;66803162 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 22566ab135eea910f925ef7f7c533261 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440167/ERR1440167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440167/ERR1440167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440167/PHESPV1380.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440167/PHESPV1380.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440167/ERR1440167_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440167/ERR1440167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440167/PHESPV1380.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440167/PHESPV1380.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68023660;70485245 ERS1195546 ERX1510545 GENOMIC 214333851 2016-06-10 PHESPV1380 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440167/PHESPV1380.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440167/PHESPV1380.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440167 PHESPV1380 ERR1440292 PHESPV1507 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440292 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440292 c47f64e7bb4149d36a3e70e972cb372e;65be00a725eadbac706e2dbd5d677cfb 1313 180553838 7f36468d3b93d2d7c3822c15905f6a31;c120055adde252e2fae887d4a6ea0b04 SAMEA4024561 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440292/ERR1440292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440292/ERR1440292_2.fastq.gz 2181309 WGS PHESPV1507 RANDOM 122463170;125369290 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ce8bbad28b6843e8a5135c82732dd963 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440292/ERR1440292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440292/ERR1440292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440292/PHESPV1507.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440292/PHESPV1507.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440292/ERR1440292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440292/ERR1440292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440292/PHESPV1507.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440292/PHESPV1507.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 129298370;132206178 ERS1195671 ERX1510670 GENOMIC 433529253 2016-06-10 PHESPV1507 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440292/PHESPV1507.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440292/PHESPV1507.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440292 PHESPV1507 ERR1440279 PHESPV1494 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440279 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440279 dbeafa358578856aad4806e485bb1f7e;c9c5f781eb882c763b5aa6e3350fe056 1313 138025610 4469695ef1191559b19c0d3f84724a03;b9d65b9c4b66a9c8e4c872fff385a302 SAMEA4024548 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440279/ERR1440279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440279/ERR1440279_2.fastq.gz 1664383 WGS PHESPV1494 RANDOM 93389184;96157658 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 76652c0d9ff37a2426b2a876476af2ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440279/ERR1440279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440279/ERR1440279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440279/PHESPV1494.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440279/PHESPV1494.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440279/ERR1440279_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440279/ERR1440279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440279/PHESPV1494.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440279/PHESPV1494.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98878181;101645945 ERS1195658 ERX1510657 GENOMIC 330724927 2016-06-10 PHESPV1494 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440279/PHESPV1494.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440279/PHESPV1494.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440279 PHESPV1494 ERR1440297 PHESPV1512 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440297 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440297 53925c4438db22ffd11973abe4b393c6;a48b5cb9a3cc432bab008f44d45d3be0 1313 141345174 41376ecb96ea2797d73899bce8d550c6;dacd70757f320a9c51b4882baee45428 SAMEA4024566 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440297/ERR1440297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440297/ERR1440297_2.fastq.gz 1698514 WGS PHESPV1512 RANDOM 95443100;98320077 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e2f1279fae5bd5216235e80a44f8c73a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440297/ERR1440297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440297/ERR1440297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440297/PHESPV1512.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440297/PHESPV1512.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440297/ERR1440297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440297/ERR1440297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440297/PHESPV1512.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440297/PHESPV1512.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101006046;103892182 ERS1195676 ERX1510675 GENOMIC 337454712 2016-06-10 PHESPV1512 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440297/PHESPV1512.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440297/PHESPV1512.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440297 PHESPV1512 ERR1440448 PHESPV1663 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440448 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440448 9395157be2f9a54a6b24b674152c8784;d6b52b2d54977b3d1bae2e840781ed37 1313 124490837 c2064edf578cb23f31e885fc667b1d46;4bdb43a38aa4867416b6241402cce36e SAMEA4024717 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440448/ERR1440448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440448/ERR1440448_2.fastq.gz 1377029 WGS PHESPV1663 RANDOM 89353237;90664688 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8e6023089284a8645531733e16a477ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440448/ERR1440448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440448/ERR1440448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440448/PHESPV1663.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440448/PHESPV1663.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440448/ERR1440448_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440448/ERR1440448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440448/PHESPV1663.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440448/PHESPV1663.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85890697;87211185 ERS1195827 ERX1510826 GENOMIC 267829924 2016-06-10 PHESPV1663 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440448/PHESPV1663.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440448/PHESPV1663.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440448 PHESPV1663 ERR1440461 PHESPV1676 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440461 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440461 1740e953049e06dceffea55e1137d4dd;3b5c3eb8f640b5e15471c2eac0b99a78 1313 142200831 080685c4697c87764672a3f5f78010e0;79a51d8fcf7e5f640baeb2cc45f62b1c SAMEA4024730 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440461/ERR1440461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440461/ERR1440461_2.fastq.gz 1579776 WGS PHESPV1676 RANDOM 102532669;103061686 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a69a7d2d46592047c425fdfe1f427648 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440461/ERR1440461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440461/ERR1440461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440461/PHESPV1676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440461/PHESPV1676.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440461/ERR1440461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440461/ERR1440461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440461/PHESPV1676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440461/PHESPV1676.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98427831;98971144 ERS1195840 ERX1510839 GENOMIC 304534763 2016-06-10 PHESPV1676 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440461/PHESPV1676.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440461/PHESPV1676.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440461 PHESPV1676 ERR1440446 PHESPV1661 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440446 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440446 2e3939192e75dd66b028792b8953ffc6;2e60cfd56f63ff91c903df1f2b964711 1313 134211530 ba47ed1ca6f24eaee6d1a35ad591367f;584994af35741db0d68b3e051e92a6c1 SAMEA4024715 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440446/ERR1440446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440446/ERR1440446_2.fastq.gz 1479132 WGS PHESPV1661 RANDOM 96796387;98425478 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 146bc3f5e34823a787562f513abf9aa4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440446/ERR1440446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440446/ERR1440446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440446/PHESPV1661.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440446/PHESPV1661.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440446/ERR1440446_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440446/ERR1440446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440446/PHESPV1661.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440446/PHESPV1661.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93087365;94714075 ERS1195825 ERX1510824 GENOMIC 290144736 2016-06-10 PHESPV1661 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440446/PHESPV1661.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440446/PHESPV1661.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440446 PHESPV1661 ERR1440467 PHESPV1682 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440467 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440467 5680bdaca1f15081043142002f806fd2;049eb8c512e2bf9358da79e866b4bd0e 1313 142255292 44098eff77d2af29891161ede2a6d2d6;2032c998706799bd78bddd60fac39eaa SAMEA4024736 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440467/ERR1440467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440467/ERR1440467_2.fastq.gz 1555313 WGS PHESPV1682 RANDOM 101927342;104464624 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 330229b1762adc5b7fb7b1d49345d8e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440467/ERR1440467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440467/ERR1440467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440467/PHESPV1682.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440467/PHESPV1682.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440467/ERR1440467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440467/ERR1440467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440467/PHESPV1682.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440467/PHESPV1682.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97923955;100442071 ERS1195846 ERX1510845 GENOMIC 304226463 2016-06-10 PHESPV1682 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440467/PHESPV1682.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440467/PHESPV1682.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440467 PHESPV1682 ERR1440468 PHESPV1683 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440468 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440468 e5d42d6addb6926585bfa1d2323b63a4;87b38b495c42014da44974e107977497 1313 153610334 c1f958bb664fe616b87cbe2535786f59;cdfbfa0d3f8cc8ebd6353aa59bc3f393 SAMEA4024737 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440468/ERR1440468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440468/ERR1440468_2.fastq.gz 1675427 WGS PHESPV1683 RANDOM 109796929;113331475 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3fb07307f2ea6cb856c7d64c66ae7565 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440468/ERR1440468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440468/ERR1440468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440468/PHESPV1683.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440468/PHESPV1683.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440468/ERR1440468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440468/ERR1440468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440468/PHESPV1683.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440468/PHESPV1683.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105481723;108995002 ERS1195847 ERX1510846 GENOMIC 329245950 2016-06-10 PHESPV1683 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440468/PHESPV1683.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440468/PHESPV1683.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440468 PHESPV1683 ERR1440476 PHESPV1691 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440476 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440476 8d6f18b068bd33b4ca9af1cf1fd3644b;fbd5fded06a76ff7be5b5714e726ce40 1313 112515690 265b09d9b5f312ecdf312fefa2254459;412eee2b4b288c67c1168bdef778ced0 SAMEA4024745 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440476/ERR1440476_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440476/ERR1440476_2.fastq.gz 1233081 WGS PHESPV1691 RANDOM 79714954;83175071 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2cadee3d3436d9b10888d6a0ae7bb9fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440476/ERR1440476_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440476/ERR1440476_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440476/PHESPV1691.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440476/PHESPV1691.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440476/ERR1440476_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440476/ERR1440476_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440476/PHESPV1691.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440476/PHESPV1691.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76647707;80086241 ERS1195855 ERX1510854 GENOMIC 238923859 2016-06-10 PHESPV1691 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440476/PHESPV1691.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440476/PHESPV1691.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440476 PHESPV1691 ERR1440479 PHESPV1694 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440479 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440479 ea8f2b65880474fdd816caf18ccdfdd7;9c135145c02cbe0b0a041fa67a191cf5 1313 124771375 5bee2a18f9ee6cfa5421f10bab3481b6;2c4df74a2c604e6b4682f3ca9bbc26fe SAMEA4024748 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440479/ERR1440479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440479/ERR1440479_2.fastq.gz 1383205 WGS PHESPV1694 RANDOM 89802122;90643827 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0ac30cb3da8cda4f2224e261a80ea79d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440479/ERR1440479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440479/ERR1440479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440479/PHESPV1694.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440479/PHESPV1694.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440479/ERR1440479_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440479/ERR1440479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440479/PHESPV1694.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440479/PHESPV1694.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86320367;87174887 ERS1195858 ERX1510857 GENOMIC 268433318 2016-06-10 PHESPV1694 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440479/PHESPV1694.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440479/PHESPV1694.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440479 PHESPV1694 ERR1440487 PHESPV1702 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440487 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440487 f09c20e65ba22a2a918d90c6b5a8ad6b;420e684ff56b97d96429fb0d8a9e1af1 1313 108772947 5508f2a08dff50ed62f301d5aeecf2f6;f691a2a2b572f142f4aa7cfeea284e29 SAMEA4024756 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440487/ERR1440487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440487/ERR1440487_2.fastq.gz 1195687 WGS PHESPV1702 RANDOM 78380096;78824084 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b952d5de552e09b92e0634815f93899 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440487/ERR1440487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440487/ERR1440487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440487/PHESPV1702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440487/PHESPV1702.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440487/ERR1440487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440487/ERR1440487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440487/PHESPV1702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440487/PHESPV1702.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75403849;75854778 ERS1195866 ERX1510865 GENOMIC 232623060 2016-06-10 PHESPV1702 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440487/PHESPV1702.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440487/PHESPV1702.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440487 PHESPV1702 ERR1440481 PHESPV1696 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440481 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440481 bba49e28d02a5c9112d0335f39f7e859;b6e25849e9e66a59ea77505cdd30b06d 1313 123921732 1c60c59fb321edf8fc1cfd438a7cd253;60edb937af652805220b0ca2db1e453a SAMEA4024750 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440481/ERR1440481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440481/ERR1440481_2.fastq.gz 1380047 WGS PHESPV1696 RANDOM 89456071;89726263 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5af97ada93ace2b766668577c09dc7eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440481/ERR1440481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440481/ERR1440481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440481/PHESPV1696.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440481/PHESPV1696.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440481/ERR1440481_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440481/ERR1440481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440481/PHESPV1696.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440481/PHESPV1696.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85981864;86260801 ERS1195860 ERX1510859 GENOMIC 266716866 2016-06-10 PHESPV1696 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440481/PHESPV1696.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440481/PHESPV1696.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440481 PHESPV1696 ERR1440510 PHESPV1725 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440510 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440510 0639715182d0993c03901b0c3d3b0bd7;6324ad699c9558ada2bd600811b45d5f 1313 107528686 f18e25c80d7c32613f689e88bc8c5526;7dd6bed7e5cfa3fe4e3033b616fbba96 SAMEA4024779 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440510/ERR1440510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440510/ERR1440510_2.fastq.gz 1186647 WGS PHESPV1725 RANDOM 77248403;77968626 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 923d1d8e063d33a82a5785a5ee2c9b41 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440510/ERR1440510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440510/ERR1440510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440510/PHESPV1725.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440510/PHESPV1725.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440510/ERR1440510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440510/ERR1440510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440510/PHESPV1725.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440510/PHESPV1725.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74269972;74998966 ERS1195889 ERX1510888 GENOMIC 228856063 2016-06-10 PHESPV1725 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440510/PHESPV1725.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440510/PHESPV1725.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440510 PHESPV1725 ERR1440516 PHESPV1731 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440516 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440516 1d87843ccf197af152ff88911fc93eaa;dd68a596c5d89ca44e3fccdc09ef58b6 1313 117946719 9e6bdefd75732952f4943a16e4736552;2fc8018c9e20efdb67236f4477d72a41 SAMEA4024785 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440516/ERR1440516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440516/ERR1440516_2.fastq.gz 1317089 WGS PHESPV1731 RANDOM 85326721;85277452 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50ea968eef6075cc931d393f4930d72f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440516/ERR1440516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440516/ERR1440516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440516/PHESPV1731.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440516/PHESPV1731.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440516/ERR1440516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440516/ERR1440516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440516/PHESPV1731.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440516/PHESPV1731.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82049219;82015329 ERS1195895 ERX1510894 GENOMIC 254456802 2016-06-10 PHESPV1731 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440516/PHESPV1731.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440516/PHESPV1731.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440516 PHESPV1731 ERR1440525 PHESPV1740 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440525 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440525 cc540281fac740641cecd181e0975049;6bbf4dde3c087f80680b36f592613143 1313 172320674 8d854c8b1d7e95f2d7d0d723131de728;99e586dde131c0343fa9c62f4880771d SAMEA4024794 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440525/ERR1440525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440525/ERR1440525_2.fastq.gz 2010249 WGS PHESPV1740 RANDOM 125663321;128015306 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fed156c8f62849b6395f3aa5b59025d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440525/ERR1440525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440525/ERR1440525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440525/PHESPV1740.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440525/PHESPV1740.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440525/ERR1440525_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440525/ERR1440525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440525/PHESPV1740.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440525/PHESPV1740.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120533301;122821437 ERS1195904 ERX1510903 GENOMIC 396546136 2016-06-10 PHESPV1740 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440525/PHESPV1740.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440525/PHESPV1740.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440525 PHESPV1740 ERR1440523 PHESPV1738 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440523 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440523 7722b8b7e8a7a80e8d8944406d8aa3da;ee178ea2a29a62319b1009dfb7603922 1313 159961410 02a1c6f529c4a6fd0abc03ec4b527b01;52c7a0f095c1349641409b57f7090f74 SAMEA4024792 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440523/ERR1440523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440523/ERR1440523_2.fastq.gz 1893398 WGS PHESPV1738 RANDOM 117283559;119058812 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 51a8f3219caa41ad7b9f554536d9ff57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440523/ERR1440523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440523/ERR1440523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440523/PHESPV1738.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440523/PHESPV1738.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440523/ERR1440523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440523/ERR1440523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440523/PHESPV1738.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440523/PHESPV1738.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112443759;114160032 ERS1195902 ERX1510901 GENOMIC 372673243 2016-06-10 PHESPV1738 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440523/PHESPV1738.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440523/PHESPV1738.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440523 PHESPV1738 ERR1440529 PHESPV1744 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440529 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440529 708ab207bd3ffb602fcafad05ae50ed5;a08167c9a57d167d3cfe34b2ff60c591 1313 197709559 728c94735bf2f369020335fcc6eb971f;9ac494ebb20c08dbd442d8a9a35160ed SAMEA4024798 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440529/ERR1440529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440529/ERR1440529_2.fastq.gz 2188780 WGS PHESPV1744 RANDOM 142958594;144577852 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6d828395b99cc54d5af4b6dd3d265727 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440529/ERR1440529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440529/ERR1440529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440529/PHESPV1744.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440529/PHESPV1744.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440529/ERR1440529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440529/ERR1440529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440529/PHESPV1744.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440529/PHESPV1744.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137407881;139033165 ERS1195908 ERX1510907 GENOMIC 430805865 2016-06-10 PHESPV1744 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440529/PHESPV1744.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440529/PHESPV1744.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440529 PHESPV1744 ERR1440533 PHESPV1748 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440533 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440533 24ddeeedddc5f04f2c58ac5a509f0ee0;94b6d96a76357e5fe6dc954e6fed1220 1313 192578847 0786e9780c687c397248433d9ceccdbf;7a657688250b3ff25b428c835fe233a5 SAMEA4024802 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440533/ERR1440533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440533/ERR1440533_2.fastq.gz 2175638 WGS PHESPV1748 RANDOM 139029614;140576269 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d973fc0d36a515c49e7e8a1b5b406b3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440533/ERR1440533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440533/ERR1440533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440533/PHESPV1748.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440533/PHESPV1748.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440533/ERR1440533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440533/ERR1440533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440533/PHESPV1748.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440533/PHESPV1748.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133437383;134995473 ERS1195912 ERX1510911 GENOMIC 417493614 2016-06-10 PHESPV1748 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440533/PHESPV1748.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440533/PHESPV1748.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440533 PHESPV1748 ERR1440537 PHESPV1752 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440537 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440537 142cd3f9fa1b7f5c1eb4d99ac1b69994;ba4a605586ff2234e69999a1a858a7f0 1313 83790922 afca3ebe29483917dd926db441174a3c;5c2a1960e589ccee6427f50ba8c63e8c SAMEA4024806 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440537/ERR1440537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440537/ERR1440537_2.fastq.gz 923203 WGS PHESPV1752 RANDOM 60193505;61120665 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 688a3b0610245347496f437705a6ff66 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440537/ERR1440537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440537/ERR1440537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440537/PHESPV1752.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440537/PHESPV1752.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440537/ERR1440537_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440537/ERR1440537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440537/PHESPV1752.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440537/PHESPV1752.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57875033;58808055 ERS1195916 ERX1510915 GENOMIC 179561957 2016-06-10 PHESPV1752 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440537/PHESPV1752.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440537/PHESPV1752.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440537 PHESPV1752 ERR1440552 PHESPV1767 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440552 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440552 dc339bd2756603bf4a0686d2d94b46f9;4d196a56ad06816e7472565d7bf75de0 1313 132776508 c508967c26d6d08991e392c9fce2db46;a58183744279a48c765da4863d555b9a SAMEA4024821 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440552/ERR1440552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440552/ERR1440552_2.fastq.gz 1555814 WGS PHESPV1767 RANDOM 97655477;98562638 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline af3f87c30db00caa39c6697a97b5c76b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440552/ERR1440552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440552/ERR1440552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440552/PHESPV1767.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440552/PHESPV1767.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440552/ERR1440552_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440552/ERR1440552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440552/PHESPV1767.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440552/PHESPV1767.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93762551;94611140 ERS1195931 ERX1510930 GENOMIC 307710836 2016-06-10 PHESPV1767 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440552/PHESPV1767.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440552/PHESPV1767.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440552 PHESPV1767 ERR1440559 PHESPV1774 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440559 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440559 c4e2a059edf78c64354e06ec19881efe;55bc4dcf2cb3d278fbed22679dfd37c3 1313 177022594 2e78887346f81c5bb6219c216ee70370;64dbd8623fb10c2ec910af508c00d17c SAMEA4024828 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440559/ERR1440559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440559/ERR1440559_2.fastq.gz 1830681 WGS PHESPV1774 RANDOM 125718846;128418113 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 89f2623c57522bb451cd18651e373bf3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440559/ERR1440559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440559/ERR1440559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440559/PHESPV1774.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440559/PHESPV1774.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440559/ERR1440559_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440559/ERR1440559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440559/PHESPV1774.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440559/PHESPV1774.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120927747;123625683 ERS1195938 ERX1510937 GENOMIC 354618838 2016-06-10 PHESPV1774 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440559/PHESPV1774.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440559/PHESPV1774.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440559 PHESPV1774 ERR1440555 PHESPV1770 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440555 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440555 2eb8f81e3944d4558307ed22b05a56c4;0466abb9bb15523040ec465e26414905 1313 173664105 3661768d83e4cd46a0ae17288e32ed79;1dd4cde9d6678a18d903ec7ce4f64c36 SAMEA4024824 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440555/ERR1440555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440555/ERR1440555_2.fastq.gz 2030977 WGS PHESPV1770 RANDOM 127273946;128767954 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d1217a51db78d2d101ee498719129d0c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440555/ERR1440555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440555/ERR1440555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440555/PHESPV1770.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440555/PHESPV1770.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440555/ERR1440555_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440555/ERR1440555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440555/PHESPV1770.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440555/PHESPV1770.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122118837;123561869 ERS1195934 ERX1510933 GENOMIC 401625480 2016-06-10 PHESPV1770 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440555/PHESPV1770.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440555/PHESPV1770.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440555 PHESPV1770 ERR1440569 PHESPV1784 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440569 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440569 dc3d92918e0dd1faed0251e794106e14;8f610a5274ac5f86b4297ff4b550005b 1313 170610767 94e120565eeb45fd66d369cf6d388275;80d4ea3bca5df3ae1b862b6351f24e98 SAMEA4024838 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440569/ERR1440569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440569/ERR1440569_2.fastq.gz 1890305 WGS PHESPV1784 RANDOM 123333270;125350243 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c6b0dc900773ffb316f4f9df94dcdd3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440569/ERR1440569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440569/ERR1440569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440569/PHESPV1784.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440569/PHESPV1784.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440569/ERR1440569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440569/ERR1440569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440569/PHESPV1784.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440569/PHESPV1784.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118438467;120456278 ERS1195948 ERX1510947 GENOMIC 372209263 2016-06-10 PHESPV1784 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440569/PHESPV1784.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440569/PHESPV1784.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440569 PHESPV1784 ERR1440579 PHESPV1794 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440579 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440579 480fec55cbd22e86c0e891dcc87a2b3d;be94206417619132f434e7e5ac6594e6 1313 178309854 afc8a09c7881caf4f8e7b1a0c64ffb06;e819dcddeb5d41d905de1d720bff8378 SAMEA4024848 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440579/ERR1440579_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440579/ERR1440579_2.fastq.gz 2117217 WGS PHESPV1794 RANDOM 130913373;132411041 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 47a160d46a8e90810a41a74bb6166b54 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440579/ERR1440579_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440579/ERR1440579_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440579/PHESPV1794.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440579/PHESPV1794.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440579/ERR1440579_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440579/ERR1440579_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440579/PHESPV1794.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440579/PHESPV1794.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125577234;127024447 ERS1195958 ERX1510957 GENOMIC 417366575 2016-06-10 PHESPV1794 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440579/PHESPV1794.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440579/PHESPV1794.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440579 PHESPV1794 ERR1440828 PHESPV2043 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440828 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440828 549141eceb008826ae89a51c5f34a6dc;e384db944e36110204d52cdb3419de94 1313 187014621 b2d66adb349a5f0e487598618478e539;5829cf1aa2aae4b62103b22daf172620 SAMEA4025097 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440828/ERR1440828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440828/ERR1440828_2.fastq.gz 2034212 WGS PHESPV2043 RANDOM 134012175;136374354 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a8269b66b59c92c59467ec52378110ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440828/ERR1440828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440828/ERR1440828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440828/PHESPV2043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440828/PHESPV2043.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440828/ERR1440828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440828/ERR1440828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440828/PHESPV2043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440828/PHESPV2043.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128757903;131126781 ERS1196207 ERX1511206 GENOMIC 398216133 2016-06-10 PHESPV2043 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440828/PHESPV2043.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440828/PHESPV2043.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440828 PHESPV2043 ERR1439626 PHESPV0837 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439626 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439626 c1d73250c7fecf5754b9a54642ba9e8f;30273e8a3d87430c90b9e99f0014c545 1313 129528802 e3e0a792106466ef8810e47a57cabb40;6c8dc88a1c51520a9354744b61c52cdb SAMEA4023895 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439626/ERR1439626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439626/ERR1439626_2.fastq.gz 1421099 WGS PHESPV0837 RANDOM 89629676;91153260 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7e022e2c869140562245e1c291dbb2d6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439626/ERR1439626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439626/ERR1439626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439626/PHESPV0837.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439626/PHESPV0837.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439626/ERR1439626_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439626/ERR1439626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439626/PHESPV0837.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439626/PHESPV0837.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86008271;87581842 ERS1195005 ERX1510004 GENOMIC 260192909 2016-06-10 PHESPV0837 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439626/PHESPV0837.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439626/PHESPV0837.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439626 PHESPV0837 ERR1439641 PHESPV0852 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439641 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439641 029aeb5a7dcfd6380b8365c6fe2300a5;7ef6d68602792b9da87dc6ef9f7edb2f 1313 130279953 cb3ca6efa247c9dbd7c6d2c6981cadfc;154455141674a7f95b56221796de63d2 SAMEA4023910 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439641/ERR1439641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439641/ERR1439641_2.fastq.gz 1402296 WGS PHESPV0852 RANDOM 93975662;93860230 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c404da8e5f18254aca8c123d0f35aa5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439641/ERR1439641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439641/ERR1439641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439641/PHESPV0852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439641/PHESPV0852.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439641/ERR1439641_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439641/ERR1439641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439641/PHESPV0852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439641/PHESPV0852.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90401416;90287647 ERS1195020 ERX1510019 GENOMIC 271160653 2016-06-10 PHESPV0852 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439641/PHESPV0852.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439641/PHESPV0852.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439641 PHESPV0852 ERR1439868 PHESPV1079 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439868 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439868 67db89a6be2ad3eefc1c96be1bad6b11;39eaad9d59ec413eaa20c7dd25a850be 1313 114035150 d9dea075d857be15438594be9c28325c;63cea96e3a51bd9b349608b677466e21 SAMEA4024137 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439868/ERR1439868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439868/ERR1439868_2.fastq.gz 1244035 WGS PHESPV1079 RANDOM 81135317;82392377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 096c64373430f6cc40e44d71274a0f38 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439868/ERR1439868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439868/ERR1439868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439868/PHESPV1079.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439868/PHESPV1079.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439868/ERR1439868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439868/ERR1439868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439868/PHESPV1079.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439868/PHESPV1079.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77956268;79232593 ERS1195247 ERX1510246 GENOMIC 230089862 2016-06-10 PHESPV1079 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439868/PHESPV1079.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439868/PHESPV1079.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439868 PHESPV1079 ERR1439750 PHESPV0961 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439750 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439750 155661b18529a26ed3a6d35cc7f14416;c1f1139a4fb7feb72ca95c23d65c9177 1313 196334763 a254dc2e89d831da50bdcc4629c4e38d;0dabf07aabf37860bcf5832ee4de4927 SAMEA4024019 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439750/ERR1439750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439750/ERR1439750_2.fastq.gz 2148788 WGS PHESPV0961 RANDOM 137840823;145162313 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ad425d14daf40c575170ddfbe5145d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439750/ERR1439750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439750/ERR1439750_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439750/PHESPV0961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439750/PHESPV0961.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439750/ERR1439750_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439750/ERR1439750_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439750/PHESPV0961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439750/PHESPV0961.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132331789;139631853 ERS1195129 ERX1510128 GENOMIC 416202587 2016-06-10 PHESPV0961 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439750/PHESPV0961.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439750/PHESPV0961.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439750 PHESPV0961 ERR1438814 PHESPV0024 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438814 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438814 6b42c302305baec23f26bb484b06aeae;978079f5e9c508148629c7e9455c8bae 1313 70855681 638ff05cf8161184212c695624ed075a;f349a28ea8b920fc60abe876e886e15f SAMEA4023083 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438814/ERR1438814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438814/ERR1438814_2.fastq.gz 814422 WGS PHESPV0024 RANDOM 47730769;48640903 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 15c90491a8eca31a4d4f2ef5a5f33e48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438814/ERR1438814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438814/ERR1438814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438814/PHESPV0024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438814/PHESPV0024.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438814/ERR1438814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438814/ERR1438814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438814/PHESPV0024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438814/PHESPV0024.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50622321;51530626 ERS1194193 ERX1509192 GENOMIC 161581482 2016-06-10 PHESPV0024 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438814/PHESPV0024.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438814/PHESPV0024.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438814 PHESPV0024 ERR1438985 PHESPV0196 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438985 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438985 5be9bb93ec626795f2ec65550dca4760;605e3f2d14635b5d6c1fbe748206b87a 1313 107589654 1372b311a37a9b5717ba7ca54dd9100c;5d275322a0d42f638ed02bbfff56b2dd SAMEA4023254 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438985/ERR1438985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438985/ERR1438985_2.fastq.gz 1318200 WGS PHESPV0196 RANDOM 73868010;73832934 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3bd3d9332557173c7fd45d0fc4d5712f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438985/ERR1438985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438985/ERR1438985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438985/PHESPV0196.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438985/PHESPV0196.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438985/ERR1438985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438985/ERR1438985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438985/PHESPV0196.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438985/PHESPV0196.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78316073;78332949 ERS1194364 ERX1509363 GENOMIC 258212735 2016-06-10 PHESPV0196 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438985/PHESPV0196.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438985/PHESPV0196.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438985 PHESPV0196 ERR1440374 PHESPV1589 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440374 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440374 bbce8e01ffd4208c7985b2c95796435f;be4b663039ba26b3bb317e39e0b8acac 1313 125427242 8771eac101ce27b16b3c37ccd280834b;41adacfc104a7e3725972855c44f38ef SAMEA4024643 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440374/ERR1440374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440374/ERR1440374_2.fastq.gz 1451610 WGS PHESPV1589 RANDOM 89399895;94732542 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1ca5b4c93ea7cc6a42dff484f339e6b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440374/ERR1440374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440374/ERR1440374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440374/PHESPV1589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440374/PHESPV1589.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440374/ERR1440374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440374/ERR1440374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440374/PHESPV1589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440374/PHESPV1589.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85765511;91031297 ERS1195753 ERX1510752 GENOMIC 285241260 2016-06-10 PHESPV1589 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440374/PHESPV1589.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440374/PHESPV1589.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440374 PHESPV1589 ERR1438986 PHESPV0197 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438986 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438986 364e3944616172059f631aa21136b149;cd4249d42061d0f205a128a38aac144b 1313 130889479 edb64f929663189594ed1402d312610b;2ebf9a6a7951534fe675beb7146ea47d SAMEA4023255 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438986/ERR1438986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438986/ERR1438986_2.fastq.gz 1482668 WGS PHESPV0197 RANDOM 87068896;90377231 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ef15765cb6c6be7ebc63e27d0ec8731 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438986/ERR1438986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438986/ERR1438986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438986/PHESPV0197.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438986/PHESPV0197.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438986/ERR1438986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438986/ERR1438986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438986/PHESPV0197.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438986/PHESPV0197.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92054875;95317123 ERS1194365 ERX1509364 GENOMIC 294142301 2016-06-10 PHESPV0197 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438986/PHESPV0197.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438986/PHESPV0197.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438986 PHESPV0197 ERR1439000 PHESPV0211 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439000 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439000 356e450f988a2f1aed9b8e52aabeedac;fb44bf99541b6b330ee6abf2faadd90d 1313 134202920 41552d080781b118a176023a19c5b30b;5ad1a3143c5f9ba0818b1725c49785a8 SAMEA4023269 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439000/ERR1439000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439000/ERR1439000_2.fastq.gz 1516787 WGS PHESPV0211 RANDOM 89303401;92191899 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f2eca43eb404647a34f261494148c312 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439000/ERR1439000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439000/ERR1439000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439000/PHESPV0211.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439000/PHESPV0211.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439000/ERR1439000_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439000/ERR1439000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439000/PHESPV0211.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439000/PHESPV0211.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94389244;97243189 ERS1194379 ERX1509378 GENOMIC 300811147 2016-06-10 PHESPV0211 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439000/PHESPV0211.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439000/PHESPV0211.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439000 PHESPV0211 ERR1439019 PHESPV0230 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439019 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439019 90bab31eaf553e6d9b4a4db8a2205be1;c1fdbb9165b019063ea088585a338f24 1313 249241300 dd62c9deb3f39aa9aa8784b75ef4b640;274f9b0dfb849985dfe1452254048689 SAMEA4023288 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439019/ERR1439019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439019/ERR1439019_2.fastq.gz 1957195 WGS PHESPV0230 RANDOM 151345844;159239097 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ae6f971889ffd1868f41a5d6bd920f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439019/ERR1439019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439019/ERR1439019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439019/PHESPV0230.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439019/PHESPV0230.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439019/ERR1439019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439019/ERR1439019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439019/PHESPV0230.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439019/PHESPV0230.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 157535604;165296844 ERS1194398 ERX1509397 GENOMIC 376073647 2016-06-10 PHESPV0230 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439019/PHESPV0230.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439019/PHESPV0230.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439019 PHESPV0230 ERR1439028 PHESPV0239 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439028 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439028 120097ea2c3329d970923490666265d5;4ae9abbfaf7752589455fee8537f4f78 1313 254977794 97493d01cae2cba996c3505bf98a95d8;a84dc0d89a19936a2046627e57c85e81 SAMEA4023297 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439028/ERR1439028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439028/ERR1439028_2.fastq.gz 2003658 WGS PHESPV0239 RANDOM 156082422;161215596 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6c0247eb8b73719457c47e3c1b0ef0eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439028/ERR1439028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439028/ERR1439028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439028/PHESPV0239.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439028/PHESPV0239.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439028/ERR1439028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439028/ERR1439028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439028/PHESPV0239.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439028/PHESPV0239.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 162304765;167365947 ERS1194407 ERX1509406 GENOMIC 385628118 2016-06-10 PHESPV0239 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439028/PHESPV0239.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439028/PHESPV0239.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439028 PHESPV0239 ERR1439024 PHESPV0235 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439024 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439024 58c9e592f6ebef1960a5329be5316aaa;d36d77c57389423f6c30cfdcbe3fd12b 1313 249320633 fd3f124c4ca1ae6af61f368d625383d7;a6f0aad4b275028fdcdd8e67692d3b1e SAMEA4023293 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439024/ERR1439024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439024/ERR1439024_2.fastq.gz 1967823 WGS PHESPV0235 RANDOM 153205512;157832147 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3f8606525d51d176bc4e22a1a2f68f29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439024/ERR1439024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439024/ERR1439024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439024/PHESPV0235.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439024/PHESPV0235.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439024/ERR1439024_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439024/ERR1439024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439024/PHESPV0235.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439024/PHESPV0235.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 159380019;163938084 ERS1194403 ERX1509402 GENOMIC 379660792 2016-06-10 PHESPV0235 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439024/PHESPV0235.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439024/PHESPV0235.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439024 PHESPV0235 ERR1439095 PHESPV0306 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439095 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439095 57efd8b27b1ae2c1fde1c166050d7d80;d6148d4003239603fb64641e403b23b9 1313 134437232 254af96e33d0d1ab3068f702a8a362f8;ad1ec4cd036e2d3dd7d1c24ad94d532f SAMEA4023364 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439095/ERR1439095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439095/ERR1439095_2.fastq.gz 1131757 WGS PHESPV0306 RANDOM 81136200;85785450 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7e99d8e4d2b086eca4b89cb225fc0807 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439095/ERR1439095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439095/ERR1439095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439095/PHESPV0306.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439095/PHESPV0306.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439095/ERR1439095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439095/ERR1439095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439095/PHESPV0306.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439095/PHESPV0306.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84939108;89597468 ERS1194474 ERX1509473 GENOMIC 221542645 2016-06-10 PHESPV0306 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439095/PHESPV0306.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439095/PHESPV0306.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439095 PHESPV0306 ERR1439032 PHESPV0243 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439032 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439032 3cb235675a9e941907777384c099e29d;06e85a5e3900a1eb1d501f81df4380e9 1313 164540525 398ef4b820db49c21c5b3a09165a89fd;3cf39fa2b9d9224547f05fcc10afb11d SAMEA4023301 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439032/ERR1439032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439032/ERR1439032_2.fastq.gz 1902097 WGS PHESPV0243 RANDOM 111472464;112335850 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a56e4431a42389f2d5e7e86076e9193 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439032/ERR1439032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439032/ERR1439032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439032/PHESPV0243.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439032/PHESPV0243.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439032/ERR1439032_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439032/ERR1439032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439032/PHESPV0243.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439032/PHESPV0243.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117596427;118451348 ERS1194411 ERX1509410 GENOMIC 377471961 2016-06-10 PHESPV0243 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439032/PHESPV0243.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439032/PHESPV0243.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439032 PHESPV0243 ERR1439029 PHESPV0240 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439029 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439029 0f3892d248735a3bc6e25839311abea7;abee20e0d41cae8d864ab19c14ffe6ba 1313 316624857 86735b1bff37342916909b670df56a85;ff9e3a4692db9223c5dafd3a79d01420 SAMEA4023298 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439029/ERR1439029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439029/ERR1439029_2.fastq.gz 2502433 WGS PHESPV0240 RANDOM 195369867;199571834 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e79fd79b81057dee0c76e3aec2ccd0e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439029/ERR1439029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439029/ERR1439029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439029/PHESPV0240.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439029/PHESPV0240.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439029/ERR1439029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439029/ERR1439029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439029/PHESPV0240.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439029/PHESPV0240.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 202906287;207051083 ERS1194408 ERX1509407 GENOMIC 483383747 2016-06-10 PHESPV0240 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439029/PHESPV0240.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439029/PHESPV0240.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439029 PHESPV0240 ERR1439068 PHESPV0279 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439068 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439068 343046cfc853bd74331d700589380e1a;7f9cecb23d3721fe3e20eb25f6ca17c4 1313 185245748 2d71256210a67754a9d758f8e65e89df;a6cf1b0ad0ce0891cc208696f5dd186f SAMEA4023337 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439068/ERR1439068_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439068/ERR1439068_2.fastq.gz 1550116 WGS PHESPV0279 RANDOM 111514753;119072706 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be6836ce93d1396b61329b94de86e919 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439068/ERR1439068_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439068/ERR1439068_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439068/PHESPV0279.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439068/PHESPV0279.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439068/ERR1439068_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439068/ERR1439068_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439068/PHESPV0279.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439068/PHESPV0279.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116564002;124110400 ERS1194447 ERX1509446 GENOMIC 303239881 2016-06-10 PHESPV0279 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439068/PHESPV0279.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439068/PHESPV0279.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439068 PHESPV0279 ERR1439031 PHESPV0242 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439031 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439031 753cc9c12be047d9ec6fb3db74b7c7bb;7ae181480f59586727b84c26dc759789 1313 393356293 a384a860d71219fa7ae88908f145fddd;70849b4fa98de8c141ea0e9614116674 SAMEA4023300 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439031/ERR1439031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439031/ERR1439031_2.fastq.gz 3118090 WGS PHESPV0242 RANDOM 242839950;247105788 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6368f8325747e73fc18e6e277a764d7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439031/ERR1439031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439031/ERR1439031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439031/PHESPV0242.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439031/PHESPV0242.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439031/ERR1439031_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439031/ERR1439031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439031/PHESPV0242.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439031/PHESPV0242.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 252101812;256313697 ERS1194410 ERX1509409 GENOMIC 602827265 2016-06-10 PHESPV0242 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439031/PHESPV0242.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439031/PHESPV0242.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439031 PHESPV0242 ERR1439138 PHESPV0349 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439138 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439138 ee16f80d925fe20f41b14f3c04e78cfe;8a241729141c0fa27bf9432331f26ee1 1313 135517222 bd12bc8e437502764b86e4e275d9680b;c3e989fc988c9f7b11633c76a7b1ec2c SAMEA4023407 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439138/ERR1439138_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439138/ERR1439138_2.fastq.gz 1135097 WGS PHESPV0349 RANDOM 81989645;86271755 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 439c91c29054915aaab89d44fec6a086 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439138/ERR1439138_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439138/ERR1439138_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439138/PHESPV0349.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439138/PHESPV0349.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439138/ERR1439138_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439138/ERR1439138_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439138/PHESPV0349.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439138/PHESPV0349.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85794050;90085231 ERS1194517 ERX1509516 GENOMIC 222139153 2016-06-10 PHESPV0349 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439138/PHESPV0349.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439138/PHESPV0349.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439138 PHESPV0349 ERR1439307 PHESPV0518 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439307 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439307 a4244f295fb5f45686d1b0f823d6f60d;3cea7e5e064c626c669f9decae211585 1313 124281400 ea81bc247703a14e3c84dabae07dacd2;ae5fb63c43937348d9ce6449f8dd4937 SAMEA4023576 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439307/ERR1439307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439307/ERR1439307_2.fastq.gz 1381104 WGS PHESPV0518 RANDOM 80529845;82643488 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a90bc163cf93a77d6f7e8ee452796bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439307/ERR1439307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439307/ERR1439307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439307/PHESPV0518.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439307/PHESPV0518.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439307/ERR1439307_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439307/ERR1439307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439307/PHESPV0518.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439307/PHESPV0518.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85062508;87126344 ERS1194686 ERX1509685 GENOMIC 272318158 2016-06-10 PHESPV0518 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439307/PHESPV0518.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439307/PHESPV0518.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439307 PHESPV0518 ERR1439302 PHESPV0513 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439302 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439302 eb02772ca50aefa5c395e30c053cd3ee;a124ff47e4cf5506b35665f4e0814006 1313 209648406 dbf1388bd03b6ebead246c4581680618;b8846d1eff72ad570d236514f211d497 SAMEA4023571 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439302/ERR1439302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439302/ERR1439302_2.fastq.gz 2577884 WGS PHESPV0513 RANDOM 141633028;146041762 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ca50a56d3973a55b4ef1f526bc38a442 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439302/ERR1439302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439302/ERR1439302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439302/PHESPV0513.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439302/PHESPV0513.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439302/ERR1439302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439302/ERR1439302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439302/PHESPV0513.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439302/PHESPV0513.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 149637778;153999144 ERS1194681 ERX1509680 GENOMIC 504112342 2016-06-10 PHESPV0513 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439302/PHESPV0513.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439302/PHESPV0513.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439302 PHESPV0513 ERR1439274 PHESPV0485 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439274 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439274 6036e9ff806cd68bed75cef88ed3ddb0;0dc204010a0d9eb2f420ce4e451f8b68 1313 98145759 3511d83dd25555741290d23ea6e83b8e;1a27d00c8049edc7d4d4d0788bfe81db SAMEA4023543 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439274/ERR1439274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439274/ERR1439274_2.fastq.gz 1222031 WGS PHESPV0485 RANDOM 66038573;68670997 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 082aee33dcef9e67d02f45eb8666a54f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439274/ERR1439274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439274/ERR1439274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439274/PHESPV0485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439274/PHESPV0485.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439274/ERR1439274_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439274/ERR1439274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439274/PHESPV0485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439274/PHESPV0485.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70227628;72820845 ERS1194653 ERX1509652 GENOMIC 239461302 2016-06-10 PHESPV0485 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439274/PHESPV0485.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439274/PHESPV0485.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439274 PHESPV0485 ERR1439278 PHESPV0489 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439278 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439278 b3311edc513cbb64e2ceb71e8ac3469b;9e67063741ee2adf22e72bd5c50619d5 1313 253547793 7840d9bcc1bbc0ebc1e4c57740ebbe85;fe4e0da7cc2e0d2ef6f6d6f071832da1 SAMEA4023547 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439278/ERR1439278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439278/ERR1439278_2.fastq.gz 3119119 WGS PHESPV0489 RANDOM 170929831;176923970 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e7f9e1753ab79e3f953a679fea504f13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439278/ERR1439278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439278/ERR1439278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439278/PHESPV0489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439278/PHESPV0489.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439278/ERR1439278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439278/ERR1439278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439278/PHESPV0489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439278/PHESPV0489.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 180423916;186397311 ERS1194657 ERX1509656 GENOMIC 609888403 2016-06-10 PHESPV0489 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439278/PHESPV0489.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439278/PHESPV0489.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439278 PHESPV0489 ERR1439314 PHESPV0525 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439314 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439314 9e78b3497faee271e5d1a30dd78cc30a;347da2419f1cd707ee18706f18f8dc4a 1313 252865583 a701117c56c47a3db5342c8fdb0e3fa1;9d062aff6510fb992244fcd8d866738c SAMEA4023583 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439314/ERR1439314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439314/ERR1439314_2.fastq.gz 2802672 WGS PHESPV0525 RANDOM 165023357;172190350 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5175d3176ab95e2472bc663143a3733b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439314/ERR1439314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439314/ERR1439314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439314/PHESPV0525.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439314/PHESPV0525.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439314/ERR1439314_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439314/ERR1439314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439314/PHESPV0525.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439314/PHESPV0525.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 173577518;180643060 ERS1194693 ERX1509692 GENOMIC 553475866 2016-06-10 PHESPV0525 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439314/PHESPV0525.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439314/PHESPV0525.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439314 PHESPV0525 ERR1439394 PHESPV0605 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439394 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439394 7fb863b0547711d452847f8d158a1b9b;ef9b4a9ba28cb18e1fb8c248d4d2b512 1313 126893779 07f2df048724d5a3f17932e943dbd59d;f13c3c3255c4b62587b8e6122a013415 SAMEA4023663 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439394/ERR1439394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439394/ERR1439394_2.fastq.gz 1425816 WGS PHESPV0605 RANDOM 92477682;91855540 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fe98ff77cb06cd47f27f47086b88261b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439394/ERR1439394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439394/ERR1439394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439394/PHESPV0605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439394/PHESPV0605.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439394/ERR1439394_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439394/ERR1439394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439394/PHESPV0605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439394/PHESPV0605.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88816515;88220566 ERS1194773 ERX1509772 GENOMIC 277467637 2016-06-10 PHESPV0605 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439394/PHESPV0605.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439394/PHESPV0605.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439394 PHESPV0605 ERR1439346 PHESPV0557 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439346 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439346 020c61eb49ca01c89c715f27cd0fa3bc;e73406443a8273f4ddde30c9d0b15b8c 1313 95187890 00fcfac83b00e33ad68e506635637054;c54042ac7bc1bd48f6bbfc7bd27dd348 SAMEA4023615 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439346/ERR1439346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439346/ERR1439346_2.fastq.gz 1058720 WGS PHESPV0557 RANDOM 68762494;69253271 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f57fbe4c11155051e7b6f6d1afe6a71f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439346/ERR1439346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439346/ERR1439346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439346/PHESPV0557.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439346/PHESPV0557.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439346/ERR1439346_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439346/ERR1439346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439346/PHESPV0557.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439346/PHESPV0557.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66059363;66568019 ERS1194725 ERX1509724 GENOMIC 205378352 2016-06-10 PHESPV0557 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439346/PHESPV0557.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439346/PHESPV0557.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439346 PHESPV0557 ERR1439315 PHESPV0526 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439315 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439315 4ee9a952ec1c22b4a16c919be61c5334;06944891f17ca0bd86b5ca1b4fa22773 1313 143933552 e63ef909c47119dd118562ab2a0e2bce;1131ba44743cacf177ebbba356090dc3 SAMEA4023584 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439315/ERR1439315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439315/ERR1439315_2.fastq.gz 1607438 WGS PHESPV0526 RANDOM 94586224;97442297 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90334b37e205c5ae3f5621c51d0de2aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439315/ERR1439315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439315/ERR1439315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439315/PHESPV0526.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439315/PHESPV0526.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439315/ERR1439315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439315/ERR1439315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439315/PHESPV0526.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439315/PHESPV0526.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99826440;102638593 ERS1194694 ERX1509693 GENOMIC 317738945 2016-06-10 PHESPV0526 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439315/PHESPV0526.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439315/PHESPV0526.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439315 PHESPV0526 ERR1439380 PHESPV0591 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439380 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439380 7ea5275176da086e86bc0780616682ff;1c276b79db416aaff818a194b377fa35 1313 107165145 0964d14f0cf82faddf2fc82ff35f3ff4;ded3f4c42482311f6648fe36a62dd981 SAMEA4023649 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439380/ERR1439380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439380/ERR1439380_2.fastq.gz 1186032 WGS PHESPV0591 RANDOM 77474352;77953442 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c9e4045169f8a8a9b262b2852dc03338 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439380/ERR1439380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439380/ERR1439380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439380/PHESPV0591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439380/PHESPV0591.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439380/ERR1439380_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439380/ERR1439380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439380/PHESPV0591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439380/PHESPV0591.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74487597;74983106 ERS1194759 ERX1509758 GENOMIC 232020972 2016-06-10 PHESPV0591 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439380/PHESPV0591.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439380/PHESPV0591.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439380 PHESPV0591 ERR1439356 PHESPV0567 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439356 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439356 be548d8179e44cd894f1cf4d0d2ecb1e;e4547731ccc479260d24e5b70cf08f6a 1313 148526292 e3a4d1e4f45982e98272f4f123f74577;9757c7be5acf84d8d792b3666c2932ae SAMEA4023625 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439356/ERR1439356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439356/ERR1439356_2.fastq.gz 1834561 WGS PHESPV0567 RANDOM 99475466;104739761 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d51bc0e661bc47f8bdb00a608ea750b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439356/ERR1439356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439356/ERR1439356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439356/PHESPV0567.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439356/PHESPV0567.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439356/ERR1439356_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439356/ERR1439356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439356/PHESPV0567.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439356/PHESPV0567.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105435922;110669474 ERS1194735 ERX1509734 GENOMIC 358828627 2016-06-10 PHESPV0567 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439356/PHESPV0567.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439356/PHESPV0567.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439356 PHESPV0567 ERR1439402 PHESPV0613 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439402 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439402 9da911b3a7a120ea8becf6c9c5c9bcf4;046d6e3d09e6ccd7f067648ba423b079 1313 110563132 4446588ecd1411242f7a5a8d4ae847ea;2c1d9ada500fd35446df536bc323e274 SAMEA4023671 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439402/ERR1439402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439402/ERR1439402_2.fastq.gz 1213037 WGS PHESPV0613 RANDOM 79624672;80414326 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 272ba7af92d84b7cdfaa0e889e4d11e4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439402/ERR1439402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439402/ERR1439402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439402/PHESPV0613.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439402/PHESPV0613.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439402/ERR1439402_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439402/ERR1439402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439402/PHESPV0613.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439402/PHESPV0613.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76577590;77379147 ERS1194781 ERX1509780 GENOMIC 237963647 2016-06-10 PHESPV0613 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439402/PHESPV0613.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439402/PHESPV0613.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439402 PHESPV0613 ERR1439413 PHESPV0624 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439413 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439413 3ef3aa2dbcf1966813f2cf2bc6d14088;5cfd68330223fe278c2df2b59b1556a5 1313 107587165 6700db917b2be4cc323155b64f3a773e;1e505c5583be1ec06892cf41a3336b65 SAMEA4023682 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439413/ERR1439413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439413/ERR1439413_2.fastq.gz 1192919 WGS PHESPV0624 RANDOM 78074919;78084510 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8cc64d461178777566c73270dbe460d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439413/ERR1439413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439413/ERR1439413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439413/PHESPV0624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439413/PHESPV0624.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439413/ERR1439413_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439413/ERR1439413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439413/PHESPV0624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439413/PHESPV0624.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75101104;75134354 ERS1194792 ERX1509791 GENOMIC 233806581 2016-06-10 PHESPV0624 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439413/PHESPV0624.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439413/PHESPV0624.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439413 PHESPV0624 ERR1439452 PHESPV0663 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439452 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439452 cf5b42df04635ba0e7b4011e359b6620;fb3220559eee7e92facbd3099773a614 1313 116813857 105eff1c2bff81ee94fa31ff0b0c26b3;8830d16c3f5b9178390b0b96dc81ce63 SAMEA4023721 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439452/ERR1439452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439452/ERR1439452_2.fastq.gz 1285641 WGS PHESPV0663 RANDOM 84086077;84944392 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e6e586633df08b17e9ba2ae7a8622119 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439452/ERR1439452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439452/ERR1439452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439452/PHESPV0663.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439452/PHESPV0663.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439452/ERR1439452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439452/ERR1439452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439452/PHESPV0663.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439452/PHESPV0663.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80820384;81687699 ERS1194831 ERX1509830 GENOMIC 251623615 2016-06-10 PHESPV0663 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439452/PHESPV0663.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439452/PHESPV0663.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439452 PHESPV0663 ERR1439443 PHESPV0654 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439443 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439443 b7356505ba7fd5832f38e957e3fbbeb8;ab6f859e2cc839ab349af1b246e0d55b 1313 124454472 0e48206adaa187373610586bf09b8482;2556dde73ed3d877bb707cd0c120419e SAMEA4023712 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439443/ERR1439443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439443/ERR1439443_2.fastq.gz 1372552 WGS PHESPV0654 RANDOM 89566283;90579405 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b59747a7b25a234c4223a4041197987a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439443/ERR1439443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439443/ERR1439443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439443/PHESPV0654.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439443/PHESPV0654.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439443/ERR1439443_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439443/ERR1439443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439443/PHESPV0654.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439443/PHESPV0654.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86078764;87104670 ERS1194822 ERX1509821 GENOMIC 268068472 2016-06-10 PHESPV0654 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439443/PHESPV0654.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439443/PHESPV0654.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439443 PHESPV0654 ERR1439458 PHESPV0669 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439458 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439458 0e38fcad8368d9fb1f33cf2e0a7ec17b;192db81e8c8fe71dd6b7ca62646d7929 1313 70624864 eab3e6de593858a9105dac4bc5f16f23;48ba8680d94be1f973b06214119eddd3 SAMEA4023727 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439458/ERR1439458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439458/ERR1439458_2.fastq.gz 751760 WGS PHESPV0669 RANDOM 50684810;51244226 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f6a4abeb809145dd4d55a4084f0ec815 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439458/ERR1439458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439458/ERR1439458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439458/PHESPV0669.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439458/PHESPV0669.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439458/ERR1439458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439458/ERR1439458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439458/PHESPV0669.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439458/PHESPV0669.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48802484;49360751 ERS1194837 ERX1509836 GENOMIC 146001796 2016-06-10 PHESPV0669 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439458/PHESPV0669.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439458/PHESPV0669.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439458 PHESPV0669 ERR1439542 PHESPV0753 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439542 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439542 da2fd40c287a05c1741649e479f58b4d;5423faf5daa3a4c8ea8939e7c356b420 1313 82660622 ed9208dec728fd6db07f0a9e864d9f79;9f0daf8337ba90b9a01ec8c75dc78ce5 SAMEA4023811 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439542/ERR1439542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439542/ERR1439542_2.fastq.gz 877424 WGS PHESPV0753 RANDOM 59591291;59822313 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c1eb3bb41a75820d8eff592b0ae4c45 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439542/ERR1439542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439542/ERR1439542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439542/PHESPV0753.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439542/PHESPV0753.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439542/ERR1439542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439542/ERR1439542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439542/PHESPV0753.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439542/PHESPV0753.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57408656;57637788 ERS1194921 ERX1509920 GENOMIC 171673574 2016-06-10 PHESPV0753 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439542/PHESPV0753.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439542/PHESPV0753.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439542 PHESPV0753 ERR1439562 PHESPV0773 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439562 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439562 f2eec01d4d82bf2aa8b1e66b297d5243;2a2282f35bd9da4dbbebe10e6c9b6ad6 1313 125265043 f44914896f5cc0d893d432197deb84d4;3c616e2e84254507e88fe982c3c467e1 SAMEA4023831 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439562/ERR1439562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439562/ERR1439562_2.fastq.gz 1378445 WGS PHESPV0773 RANDOM 86908855;87999124 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 13a2dd37a9c77bc1787d23b1441a6a37 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439562/ERR1439562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439562/ERR1439562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439562/PHESPV0773.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439562/PHESPV0773.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439562/ERR1439562_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439562/ERR1439562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439562/PHESPV0773.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439562/PHESPV0773.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83399725;84527854 ERS1194941 ERX1509940 GENOMIC 252364063 2016-06-10 PHESPV0773 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439562/PHESPV0773.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439562/PHESPV0773.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439562 PHESPV0773 ERR1439580 PHESPV0791 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439580 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439580 969fd4972b89abc9ad6b781d9c408bab;31bd34edd10889d11c357491805e7ad1 1313 311308294 017fca29681d0a84794c99fc5515431b;736a8f80c8235ade9ed095250f7336f2 SAMEA4023849 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439580/ERR1439580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439580/ERR1439580_2.fastq.gz 2415696 WGS PHESPV0791 RANDOM 202040213;207451955 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1a5c1ec1df76fb50920ff0a479c24d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439580/ERR1439580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439580/ERR1439580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439580/PHESPV0791.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439580/PHESPV0791.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439580/ERR1439580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439580/ERR1439580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439580/PHESPV0791.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439580/PHESPV0791.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 195876093;201255208 ERS1194959 ERX1509958 GENOMIC 464621068 2016-06-10 PHESPV0791 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439580/PHESPV0791.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439580/PHESPV0791.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439580 PHESPV0791 ERR1439593 PHESPV0804 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439593 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439593 8bb99e4087b72f7a5c9daa14b839835a;bf6e538e16abc98ec3d01cb7f01ec9d5 1313 74425709 ee6ff662826ec4bb435cb03d2e9c2f23;9a6143b07f11dcc44c5c3abe41a8cbae SAMEA4023862 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439593/ERR1439593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439593/ERR1439593_2.fastq.gz 827161 WGS PHESPV0804 RANDOM 51955484;52184548 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f641749ec59b14d902752411fe9f104e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439593/ERR1439593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439593/ERR1439593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439593/PHESPV0804.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439593/PHESPV0804.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439593/ERR1439593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439593/ERR1439593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439593/PHESPV0804.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439593/PHESPV0804.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 49874218;50138414 ERS1194972 ERX1509971 GENOMIC 149708781 2016-06-10 PHESPV0804 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439593/PHESPV0804.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439593/PHESPV0804.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439593 PHESPV0804 ERR1439632 PHESPV0843 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439632 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439632 25446321852fc560ed325a1a6eb4c2d2;1abd3562813856d655acc86e0bc06af2 1313 236645080 51ed5045e97bbffb6c193fd1891f7237;5c81c4660f56faeb74c8413ce75e53e9 SAMEA4023901 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439632/ERR1439632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439632/ERR1439632_2.fastq.gz 2524159 WGS PHESPV0843 RANDOM 168882450;170547971 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0cda2991f069c7ebaad137df8fade4b3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439632/ERR1439632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439632/ERR1439632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439632/PHESPV0843.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439632/PHESPV0843.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439632/ERR1439632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439632/ERR1439632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439632/PHESPV0843.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439632/PHESPV0843.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 162476255;164127304 ERS1195011 ERX1510010 GENOMIC 488780479 2016-06-10 PHESPV0843 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439632/PHESPV0843.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439632/PHESPV0843.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439632 PHESPV0843 ERR1439650 PHESPV0861 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439650 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439650 c11a1e181830c522dc870bcd5c188f1c;5002fae1039920e404ae9af05ac2f7e6 1313 157271816 be5f45b40ce4bb944b189151b242cef8;b023a58000137e67c6f6e26371cc97bd SAMEA4023919 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439650/ERR1439650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439650/ERR1439650_2.fastq.gz 1772327 WGS PHESPV0861 RANDOM 113612442;115050806 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42bdaec8378910a3a82a53bd5f6b23a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439650/ERR1439650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439650/ERR1439650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439650/PHESPV0861.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439650/PHESPV0861.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439650/ERR1439650_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439650/ERR1439650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439650/PHESPV0861.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439650/PHESPV0861.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108926646;110380899 ERS1195029 ERX1510028 GENOMIC 343436873 2016-06-10 PHESPV0861 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439650/PHESPV0861.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439650/PHESPV0861.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439650 PHESPV0861 ERR1439790 PHESPV1001 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439790 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439790 3f52dd493d0c97118b2bacbf170eba0e;d86bc9af951e2a807998b27c60560e60 1313 148399349 15595a12f25035aa3fb64b4f6062e866;458efe83a4b2ac0e1427820797566669 SAMEA4024059 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439790/ERR1439790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439790/ERR1439790_2.fastq.gz 1658378 WGS PHESPV1001 RANDOM 107727106;107613373 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 07ac2c5f0fc9ac946f85b92aa2826825 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439790/ERR1439790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439790/ERR1439790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439790/PHESPV1001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439790/PHESPV1001.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439790/ERR1439790_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439790/ERR1439790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439790/PHESPV1001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439790/PHESPV1001.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103369132;103278248 ERS1195169 ERX1510168 GENOMIC 317816395 2016-06-10 PHESPV1001 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439790/PHESPV1001.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439790/PHESPV1001.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439790 PHESPV1001 ERR1439803 PHESPV1014 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439803 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439803 eb9843f0cfe449c174d7e1405e3b04b7;b28e724d5807e05c6e75762efede8521 1313 152777022 62963e6a561e68fd127437948a62260f;4edcc3dce232c212be135cbc25e2a7b8 SAMEA4024072 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439803/ERR1439803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439803/ERR1439803_2.fastq.gz 1745704 WGS PHESPV1014 RANDOM 110837673;110822413 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 128f0be0412932f72d725f7624a888d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439803/ERR1439803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439803/ERR1439803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439803/PHESPV1014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439803/PHESPV1014.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439803/ERR1439803_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439803/ERR1439803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439803/PHESPV1014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439803/PHESPV1014.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106229283;106239715 ERS1195182 ERX1510181 GENOMIC 325878499 2016-06-10 PHESPV1014 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439803/PHESPV1014.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439803/PHESPV1014.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439803 PHESPV1014 ERR1439998 PHESPV1209 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439998 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439998 58f1985f0dc7d3e17f9f86c809c368a3;0fb0c2b20b0ad8025bf4349caad3f567 1313 142504303 66bdd3b4cc7b66dcc0d3d5f6aaf7a9ed;01954d87c532fab85c406ea4d477f298 SAMEA4024267 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439998/ERR1439998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439998/ERR1439998_2.fastq.gz 1643415 WGS PHESPV1209 RANDOM 94374112;98224360 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b1354f3ba7df34c20eb192d444e6949 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439998/ERR1439998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439998/ERR1439998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439998/PHESPV1209.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439998/PHESPV1209.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439998/ERR1439998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439998/ERR1439998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439998/PHESPV1209.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439998/PHESPV1209.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99759483;103553299 ERS1195377 ERX1510376 GENOMIC 326364205 2016-06-10 PHESPV1209 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439998/PHESPV1209.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439998/PHESPV1209.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439998 PHESPV1209 ERR1439910 PHESPV1121 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439910 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439910 0197a1807623a5b4955694976b4af10d;440c010ef72f23819e430d6a9236b04a 1313 157534380 5e2f63240b39b2b76ac77c87161d8107;e283198e54f210f53d2b663b39046d23 SAMEA4024179 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439910/ERR1439910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439910/ERR1439910_2.fastq.gz 1763030 WGS PHESPV1121 RANDOM 105804057;107425825 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 05e040a631f2bfaa4b6c87b81e16d12e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439910/ERR1439910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439910/ERR1439910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439910/PHESPV1121.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439910/PHESPV1121.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439910/ERR1439910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439910/ERR1439910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439910/PHESPV1121.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439910/PHESPV1121.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111568123;113197429 ERS1195289 ERX1510288 GENOMIC 350015350 2016-06-10 PHESPV1121 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439910/PHESPV1121.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439910/PHESPV1121.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439910 PHESPV1121 ERR1440050 PHESPV1261 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440050 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440050 4b5fb525e4d82bac5d24c4d8293479da;64163db493c2459c8b38eccc9265af43 1313 132129959 8147ce125eab6294da68ce3acfc28a18;6694e3031fd88d16e9b0eca048163c37 SAMEA4024319 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440050/ERR1440050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440050/ERR1440050_2.fastq.gz 1441356 WGS PHESPV1261 RANDOM 87606263;90063482 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b9f2d123e423035d4bf2d6319638d92a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440050/ERR1440050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440050/ERR1440050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440050/PHESPV1261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440050/PHESPV1261.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440050/ERR1440050_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440050/ERR1440050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440050/PHESPV1261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440050/PHESPV1261.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92402772;94822489 ERS1195429 ERX1510428 GENOMIC 285200685 2016-06-10 PHESPV1261 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440050/PHESPV1261.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440050/PHESPV1261.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440050 PHESPV1261 ERR1440112 PHESPV1323 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440112 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440112 36d05685f0ff32917fc5ff6c5d5ae9c6;8b8e2de7af376dc4219b3a36694b2111 1313 116944376 244b6a417a3eb65a1b19ebe92f3d7034;fe77b9a6f6a0f548017278a30f92e847 SAMEA4024381 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440112/ERR1440112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440112/ERR1440112_2.fastq.gz 1301844 WGS PHESPV1323 RANDOM 76693957;81048001 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7bab6dafbbaa03b01b3738fca470f8bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440112/ERR1440112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440112/ERR1440112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440112/PHESPV1323.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440112/PHESPV1323.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440112/ERR1440112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440112/ERR1440112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440112/PHESPV1323.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440112/PHESPV1323.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81088400;85323061 ERS1195491 ERX1510490 GENOMIC 258082841 2016-06-10 PHESPV1323 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440112/PHESPV1323.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440112/PHESPV1323.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440112 PHESPV1323 ERR1440149 PHESPV1362 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440149 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440149 d679c07bcaab473242f75d74b8459a6a;42907ddb16ce750a67561cd685333f8f 1313 99265993 4cd9c161ff3027043aa64d978f58d076;8b3228ea0a37768c613a595018d813f5 SAMEA4024418 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440149/ERR1440149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440149/ERR1440149_2.fastq.gz 1102766 WGS PHESPV1362 RANDOM 65182402;68793719 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f70a0ded6d804863dd3c74a92fd1b984 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440149/ERR1440149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440149/ERR1440149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440149/PHESPV1362.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440149/PHESPV1362.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440149/ERR1440149_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440149/ERR1440149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440149/PHESPV1362.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440149/PHESPV1362.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68999261;72500850 ERS1195528 ERX1510527 GENOMIC 218592432 2016-06-10 PHESPV1362 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440149/PHESPV1362.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440149/PHESPV1362.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440149 PHESPV1362 ERR1440406 PHESPV1621 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440406 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440406 761b90d09977fe6f3458132d8ba53e5e;1bf93e57046653197c5d3ccc904e50fa 1313 90161523 740b287d56a4421a33616aa9aa7efbef;f6768886606a9033f8349ce9e9646455 SAMEA4024675 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440406/ERR1440406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440406/ERR1440406_2.fastq.gz 983673 WGS PHESPV1621 RANDOM 64643769;66507076 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8050add71eeae57ca6551b5ac2a995cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440406/ERR1440406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440406/ERR1440406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440406/PHESPV1621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440406/PHESPV1621.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440406/ERR1440406_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440406/ERR1440406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440406/PHESPV1621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440406/PHESPV1621.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62184870;64034843 ERS1195785 ERX1510784 GENOMIC 193589417 2016-06-10 PHESPV1621 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440406/PHESPV1621.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440406/PHESPV1621.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440406 PHESPV1621 ERR1440418 PHESPV1633 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440418 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440418 cd3e06fc44b6f99f57d780a9f48015c1;bcc55c8727ade94d93ac4681230b1016 1313 189772237 84e9fc93e087bb7c2f900df07c4e5886;deab26436f0e5cb2d272960925d067ea SAMEA4024687 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440418/ERR1440418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440418/ERR1440418_2.fastq.gz 2089331 WGS PHESPV1633 RANDOM 136313650;138606583 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a1d4d1c38e661e7e0f6a72e31c40d32a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440418/ERR1440418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440418/ERR1440418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440418/PHESPV1633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440418/PHESPV1633.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440418/ERR1440418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440418/ERR1440418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440418/PHESPV1633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440418/PHESPV1633.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130993923;133286309 ERS1195797 ERX1510796 GENOMIC 408274000 2016-06-10 PHESPV1633 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440418/PHESPV1633.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440418/PHESPV1633.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440418 PHESPV1633 ERR1440441 PHESPV1656 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440441 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440441 bc416883d130b7df83ee746de66c03a0;172f127f4a6d591a42d09700fbe25f70 1313 205344406 e5f38793598a111de285f4e3a5c94442;108a05b49bb84fc0a269549661b6c9b7 SAMEA4024710 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440441/ERR1440441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440441/ERR1440441_2.fastq.gz 2312309 WGS PHESPV1656 RANDOM 147783855;149726379 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc782a6556fa8c992d010abd201f12c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440441/ERR1440441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440441/ERR1440441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440441/PHESPV1656.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440441/PHESPV1656.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440441/ERR1440441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440441/ERR1440441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440441/PHESPV1656.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440441/PHESPV1656.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141962692;143918152 ERS1195820 ERX1510819 GENOMIC 442224430 2016-06-10 PHESPV1656 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440441/PHESPV1656.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440441/PHESPV1656.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440441 PHESPV1656 ERR1440500 PHESPV1715 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440500 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440500 aea952a740403de0828fef7c8248d72e;c135753e39529bf3682383f23c667f12 1313 149544840 830184ae7ef619febd482b2b3292ce09;b37009f50c857bd4973f6b53e7fdd487 SAMEA4024769 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440500/ERR1440500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440500/ERR1440500_2.fastq.gz 1650476 WGS PHESPV1715 RANDOM 107047796;110299046 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline baa681b3f45ef352fa7445690d6347b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440500/ERR1440500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440500/ERR1440500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440500/PHESPV1715.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440500/PHESPV1715.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440500/ERR1440500_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440500/ERR1440500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440500/PHESPV1715.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440500/PHESPV1715.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102778703;106014029 ERS1195879 ERX1510878 GENOMIC 322147215 2016-06-10 PHESPV1715 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440500/PHESPV1715.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440500/PHESPV1715.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440500 PHESPV1715 ERR1440546 PHESPV1761 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440546 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440546 e0ce2f6099622cc2d181e17c4b788aec;d8d6f5aac009d9ab34d78bb6379a3637 1313 159990251 e42ef25d98da9602f572ab1eb7c7279d;09ea359567d3fbb2471028098e2644e5 SAMEA4024815 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440546/ERR1440546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440546/ERR1440546_2.fastq.gz 1880631 WGS PHESPV1761 RANDOM 117286384;118517876 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 290ed65143a1442a81035c1b0d08cf2c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440546/ERR1440546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440546/ERR1440546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440546/PHESPV1761.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440546/PHESPV1761.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440546/ERR1440546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440546/ERR1440546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440546/PHESPV1761.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440546/PHESPV1761.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112506343;113673698 ERS1195925 ERX1510924 GENOMIC 368406779 2016-06-10 PHESPV1761 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440546/PHESPV1761.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440546/PHESPV1761.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440546 PHESPV1761 ERR1440562 PHESPV1777 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440562 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440562 db63e4652475f3a570967e693fd41bad;e0fd445b2da08d08ada1666c2a5f71dd 1313 111763012 9aead9e1b49c750c2e64afb372305585;88bdd86d720bba1ecb25e08bd41e0bdc SAMEA4024831 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440562/ERR1440562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440562/ERR1440562_2.fastq.gz 1301318 WGS PHESPV1777 RANDOM 81571563;83317828 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 56b7f8ea673cdea3e72c21524e37fa57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440562/ERR1440562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440562/ERR1440562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440562/PHESPV1777.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440562/PHESPV1777.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440562/ERR1440562_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440562/ERR1440562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440562/PHESPV1777.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440562/PHESPV1777.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78398312;80087093 ERS1195941 ERX1510940 GENOMIC 257234791 2016-06-10 PHESPV1777 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440562/PHESPV1777.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440562/PHESPV1777.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440562 PHESPV1777 ERR1440576 PHESPV1791 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440576 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440576 af7357a8dc94133a2308b8d246446e1f;8aa73878049b70ea010c6ed5c80b7f5f 1313 132032907 af0772015347c759605996a6c31f24f6;f1a0cef071f8ecdfee3754fa61c52111 SAMEA4024845 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440576/ERR1440576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440576/ERR1440576_2.fastq.gz 1535714 WGS PHESPV1791 RANDOM 94835276;99309415 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63d7dcf684b2ed985f283170db6a30a3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440576/ERR1440576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440576/ERR1440576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440576/PHESPV1791.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440576/PHESPV1791.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440576/ERR1440576_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440576/ERR1440576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440576/PHESPV1791.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440576/PHESPV1791.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90993368;95384094 ERS1195955 ERX1510954 GENOMIC 302134759 2016-06-10 PHESPV1791 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440576/PHESPV1791.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440576/PHESPV1791.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440576 PHESPV1791 ERR1440668 PHESPV1883 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440668 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440668 c7dea6fbcf11fd4cbdf7d9f6723e0701;ca6950f1b0b74f470a9ea6678bc32c8b 1313 93188791 9b457f201ef308ab7a38d9e86dadb21f;9d1fa48a09d1a55e4dff2ab0190c8359 SAMEA4024937 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440668/ERR1440668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440668/ERR1440668_2.fastq.gz 993530 WGS PHESPV1883 RANDOM 65713225;66993010 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1eeec42f59c05bb16984e379194b78a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440668/ERR1440668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440668/ERR1440668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440668/PHESPV1883.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440668/PHESPV1883.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440668/ERR1440668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440668/ERR1440668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440668/PHESPV1883.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440668/PHESPV1883.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63160601;64432376 ERS1196047 ERX1511046 GENOMIC 192782139 2016-06-10 PHESPV1883 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440668/PHESPV1883.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440668/PHESPV1883.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440668 PHESPV1883 ERR1440704 PHESPV1919 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440704 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440704 d91a7e648aa74a137dfde35b0e7af5e7;4adbc9738659b0a94eb8bf9d457d2063 1313 151776484 a55d6a81417f05bdd7440dc40d3c2f22;5c75719d36a46db0ea23b09718630548 SAMEA4024973 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440704/ERR1440704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440704/ERR1440704_2.fastq.gz 1618138 WGS PHESPV1919 RANDOM 107677848;108476207 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0d29c2c9f0363c4b7d6a99edfa695626 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440704/ERR1440704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440704/ERR1440704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440704/PHESPV1919.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440704/PHESPV1919.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440704/ERR1440704_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440704/ERR1440704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440704/PHESPV1919.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440704/PHESPV1919.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103380228;104168879 ERS1196083 ERX1511082 GENOMIC 314673343 2016-06-10 PHESPV1919 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440704/PHESPV1919.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440704/PHESPV1919.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440704 PHESPV1919 ERR1440720 PHESPV1935 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440720 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440720 695099350f3901002dde73ac145984fc;2289bab8dcfffcc3b4769e86fe4cd4d4 1313 119432542 a7e3c02c8f8818008214967a84309463;1ecf3ca826bb99870a9fd547b5557c83 SAMEA4024989 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440720/ERR1440720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440720/ERR1440720_2.fastq.gz 1254600 WGS PHESPV1935 RANDOM 83971321;85308725 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 969592c274c6c5315d781c9816a4010b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440720/ERR1440720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440720/ERR1440720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440720/PHESPV1935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440720/PHESPV1935.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440720/ERR1440720_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440720/ERR1440720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440720/PHESPV1935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440720/PHESPV1935.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80768695;82101655 ERS1196099 ERX1511098 GENOMIC 243679584 2016-06-10 PHESPV1935 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440720/PHESPV1935.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440720/PHESPV1935.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440720 PHESPV1935 ERR1440736 PHESPV1951 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440736 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440736 90fb85a0cd42555803b47ff552a03062;4f2b90af9bd9b1637466a4425850686f 1313 132014301 7504dd903a4bf2e26db233ea0f72630c;d3e063b9a89cfb4f0db0f8839ddd4b18 SAMEA4025005 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440736/ERR1440736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440736/ERR1440736_2.fastq.gz 1487501 WGS PHESPV1951 RANDOM 95944873;96572351 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d8e477ceeb49f4460de76c96467df196 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440736/ERR1440736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440736/ERR1440736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440736/PHESPV1951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440736/PHESPV1951.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440736/ERR1440736_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440736/ERR1440736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440736/PHESPV1951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440736/PHESPV1951.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92154699;92782959 ERS1196115 ERX1511114 GENOMIC 291035948 2016-06-10 PHESPV1951 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440736/PHESPV1951.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440736/PHESPV1951.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440736 PHESPV1951 ERR1440817 PHESPV2032 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440817 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440817 45d5ec1a61ef78409424d9ad6d2237b6;127f0fa7b79f5a240483eccf23229ec2 1313 154048238 924153b0a92b8b4033b149ce76247b5b;55d110e9eb353e69f633df79fc62649a SAMEA4025086 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440817/ERR1440817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440817/ERR1440817_2.fastq.gz 1676319 WGS PHESPV2032 RANDOM 110691042;112267799 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a4a7a9944460a6e97f301f849531939 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440817/ERR1440817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440817/ERR1440817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440817/PHESPV2032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440817/PHESPV2032.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440817/ERR1440817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440817/ERR1440817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440817/PHESPV2032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440817/PHESPV2032.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106305100;107888619 ERS1196196 ERX1511195 GENOMIC 327875120 2016-06-10 PHESPV2032 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440817/PHESPV2032.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440817/PHESPV2032.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440817 PHESPV2032 ERR1439856 PHESPV1067 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439856 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439856 6245686d6c23f6854bf348674c03d776;3c3166c30c11509a6583ca54f5012541 1313 150095853 a0b0636e0eb313ddd1087f2907bc6f32;7d86e59bf0aa57c9634f27b9a7154eb0 SAMEA4024125 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439856/ERR1439856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439856/ERR1439856_2.fastq.gz 1634377 WGS PHESPV1067 RANDOM 100704876;101998180 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ac6dbc7e95672bf659ac126b908f574b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439856/ERR1439856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439856/ERR1439856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439856/PHESPV1067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439856/PHESPV1067.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439856/ERR1439856_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439856/ERR1439856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439856/PHESPV1067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439856/PHESPV1067.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106112401;107392578 ERS1195235 ERX1510234 GENOMIC 323419603 2016-06-10 PHESPV1067 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439856/PHESPV1067.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439856/PHESPV1067.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439856 PHESPV1067 ERR1439197 PHESPV0408 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439197 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439197 aa7122dec1d2b8b3864a46c84165d473;a372a08e557676d91cf042db049def43 1313 195850999 4c2d2443d7923e6c4278a0bfa6cfcc02;ea6742232c1d8d77a3b25767f2116ada SAMEA4023466 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439197/ERR1439197_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439197/ERR1439197_2.fastq.gz 2416613 WGS PHESPV0408 RANDOM 132921168;136275226 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b7d4f2ccbf632cc71c7d26bf87dc870 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439197/ERR1439197_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439197/ERR1439197_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439197/PHESPV0408.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439197/PHESPV0408.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439197/ERR1439197_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439197/ERR1439197_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439197/PHESPV0408.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439197/PHESPV0408.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 140526784;143833352 ERS1194576 ERX1509575 GENOMIC 472988326 2016-06-10 PHESPV0408 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439197/PHESPV0408.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439197/PHESPV0408.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439197 PHESPV0408 ERR1438853 PHESPV0063 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438853 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438853 e11061f2270f45d8d944ea22d6940e5f;11092be64d82246f12fe9c547688cdf0 1313 95898715 b1659db95816f49f087ce349e6aa9499;a95d476003f758b3c0558a56e097a6b4 SAMEA4023122 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438853/ERR1438853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438853/ERR1438853_2.fastq.gz 1121643 WGS PHESPV0063 RANDOM 63916987;67029068 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 84266872f7b1b0497240bb550a366712 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438853/ERR1438853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438853/ERR1438853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438853/PHESPV0063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438853/PHESPV0063.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438853/ERR1438853_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438853/ERR1438853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438853/PHESPV0063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438853/PHESPV0063.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67760132;70851286 ERS1194232 ERX1509231 GENOMIC 222963704 2016-06-10 PHESPV0063 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438853/PHESPV0063.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438853/PHESPV0063.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438853 PHESPV0063 ERR1439499 PHESPV0710 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439499 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439499 048deb349a80fb2aca773b6d149bca3d;82305f26c8f38eafde7c753d9ba56b0f 1313 199833687 827cb15b58fd014863d79fd21ce4b366;9fa4396387a9b7a5e44c56d11eb403f3 SAMEA4023768 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439499/ERR1439499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439499/ERR1439499_2.fastq.gz 2422724 WGS PHESPV0710 RANDOM 134582026;139797224 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c61d668fbcf1dc51016cc9bcc1149dee ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439499/ERR1439499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439499/ERR1439499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439499/PHESPV0710.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439499/PHESPV0710.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439499/ERR1439499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439499/ERR1439499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439499/PHESPV0710.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439499/PHESPV0710.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142150306;147471508 ERS1194878 ERX1509877 GENOMIC 474304097 2016-06-10 PHESPV0710 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439499/PHESPV0710.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439499/PHESPV0710.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439499 PHESPV0710 ERR1439527 PHESPV0738 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439527 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439527 0ba702d3739a0ebcad87f63bb4639b4f;c1ab6655516d260dedc76a65a473f9f5 1313 120342516 3a764366700a128e3a1a5a11b16bb001;b454a30fdeb3404ea933c5d1ef5f6471 SAMEA4023796 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439527/ERR1439527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439527/ERR1439527_2.fastq.gz 1444737 WGS PHESPV0738 RANDOM 81431098;83010053 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3dbf3537c2b9bce1797a042d5dcf39f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439527/ERR1439527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439527/ERR1439527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439527/PHESPV0738.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439527/PHESPV0738.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439527/ERR1439527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439527/ERR1439527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439527/PHESPV0738.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439527/PHESPV0738.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86283433;87847588 ERS1194906 ERX1509905 GENOMIC 281699011 2016-06-10 PHESPV0738 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439527/PHESPV0738.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439527/PHESPV0738.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439527 PHESPV0738 ERR1439806 PHESPV1017 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439806 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439806 18a81ee5fb3d9ec6c8a3aceb9588fb48;bd80c9e70af747eff0bcc23e7e51c5d7 1313 162540437 cfdb38c2be0e4e952bd465736f8d9e5f;1dec0045d2e896559e1c06bf7025f685 SAMEA4024075 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439806/ERR1439806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439806/ERR1439806_2.fastq.gz 1823342 WGS PHESPV1017 RANDOM 118278137;117712024 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c436e7dd167b5e92fd7cf5ecc6cadc5f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439806/ERR1439806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439806/ERR1439806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439806/PHESPV1017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439806/PHESPV1017.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439806/ERR1439806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439806/ERR1439806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439806/PHESPV1017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439806/PHESPV1017.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113487786;112947079 ERS1195185 ERX1510184 GENOMIC 349877637 2016-06-10 PHESPV1017 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439806/PHESPV1017.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439806/PHESPV1017.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439806 PHESPV1017 ERR1439994 PHESPV1205 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439994 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439994 18b3ef6e99aa004720037bd0966841fb;bb4896119fa102410a1f27b90eeebd61 1313 129854358 25167019ebc99d071a7467157c5e42b2;e5e1de9f6bd942cc6c9db8709680086c SAMEA4024263 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439994/ERR1439994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439994/ERR1439994_2.fastq.gz 1485049 WGS PHESPV1205 RANDOM 85625657;89874591 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6cb8ec12d31e783349a7d3af3c3d5e26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439994/ERR1439994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439994/ERR1439994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439994/PHESPV1205.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439994/PHESPV1205.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439994/ERR1439994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439994/ERR1439994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439994/PHESPV1205.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439994/PHESPV1205.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90556903;94738633 ERS1195373 ERX1510372 GENOMIC 294727680 2016-06-10 PHESPV1205 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439994/PHESPV1205.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439994/PHESPV1205.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439994 PHESPV1205 ERR1439540 PHESPV0751 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439540 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439540 d7427d06ec55726123a3193cbe95f284;de93cb448ac7c2ab0324f48f45a823ff 1313 134092549 65d6a998daa6b1097abe218a753a885d;ed23f36a84e67f9faae8d28ffd727513 SAMEA4023809 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439540/ERR1439540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439540/ERR1439540_2.fastq.gz 1566747 WGS PHESPV0751 RANDOM 89651797;90481173 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aa91c86b7351bb550025e76d04458132 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439540/ERR1439540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439540/ERR1439540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439540/PHESPV0751.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439540/PHESPV0751.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439540/ERR1439540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439540/ERR1439540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439540/PHESPV0751.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439540/PHESPV0751.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94750483;95591655 ERS1194919 ERX1509918 GENOMIC 310875127 2016-06-10 PHESPV0751 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439540/PHESPV0751.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439540/PHESPV0751.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439540 PHESPV0751 ERR1439501 PHESPV0712 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439501 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439501 acf9bc76ddfd58dd8825f4edbb7e32e1;768abd36586ddcfbbb41e5731cb3c948 1313 132471814 abcf62ab752b3e1ca2ad24e6225d18ed;2edf678f6a40c15288df0d5814c55d73 SAMEA4023770 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439501/ERR1439501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439501/ERR1439501_2.fastq.gz 1594309 WGS PHESPV0712 RANDOM 88907549;92625933 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b116c1644dff8d47ace281d69e92d4bb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439501/ERR1439501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439501/ERR1439501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439501/PHESPV0712.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439501/PHESPV0712.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439501/ERR1439501_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439501/ERR1439501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439501/PHESPV0712.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439501/PHESPV0712.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94223085;98009785 ERS1194880 ERX1509879 GENOMIC 311651059 2016-06-10 PHESPV0712 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439501/PHESPV0712.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439501/PHESPV0712.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439501 PHESPV0712 ERR1440036 PHESPV1247 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440036 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440036 dd8f8a25b3cc09baad388837d0c6f0aa;fcfe6d571bc190dc71d53ccceedbc8b4 1313 107057363 25f869cab32c44164a0bf8a13ab9a156;4d13d64065fdb10d1c2c978328703634 SAMEA4024305 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440036/ERR1440036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440036/ERR1440036_2.fastq.gz 1163080 WGS PHESPV1247 RANDOM 70121599;73441330 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 880a57e6f59de112029d11a95804797a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440036/ERR1440036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440036/ERR1440036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440036/PHESPV1247.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440036/PHESPV1247.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440036/ERR1440036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440036/ERR1440036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440036/PHESPV1247.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440036/PHESPV1247.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74096994;77352399 ERS1195415 ERX1510414 GENOMIC 229632039 2016-06-10 PHESPV1247 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440036/PHESPV1247.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440036/PHESPV1247.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440036 PHESPV1247 ERR1440074 PHESPV1285 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440074 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440074 e7f5f37d89c08db22a425b5f3ed20660;443984628882060b58543024adf2dd9c 1313 114421612 7d1cf66e7dfddc2671a0ead8e80df5c7;898ebc8934915f13a06a22b42cdc6c3b SAMEA4024343 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440074/ERR1440074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440074/ERR1440074_2.fastq.gz 1316305 WGS PHESPV1285 RANDOM 76001822;78676921 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 501c3c21c886da7f1771e54b95fd0e00 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440074/ERR1440074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440074/ERR1440074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440074/PHESPV1285.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440074/PHESPV1285.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440074/ERR1440074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440074/ERR1440074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440074/PHESPV1285.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440074/PHESPV1285.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80395556;83037281 ERS1195453 ERX1510452 GENOMIC 261357464 2016-06-10 PHESPV1285 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440074/PHESPV1285.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440074/PHESPV1285.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440074 PHESPV1285 ERR1440286 PHESPV1501 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440286 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440286 7e81fefa70d535025cac6fc2f46fec2c;be5cf77028b6141d05dd49ec1997d6c5 1313 135436048 075c6c1f00cd8ae3310888a67112c782;7ad37f5a29f40108067e63378344288e SAMEA4024555 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440286/ERR1440286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440286/ERR1440286_2.fastq.gz 1612826 WGS PHESPV1501 RANDOM 90446142;95021763 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e9a37fb2eb8b0a3ccd81db9e3194b18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440286/ERR1440286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440286/ERR1440286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440286/PHESPV1501.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440286/PHESPV1501.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440286/ERR1440286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440286/ERR1440286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440286/PHESPV1501.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440286/PHESPV1501.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95709946;100256858 ERS1195665 ERX1510664 GENOMIC 320072894 2016-06-10 PHESPV1501 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440286/PHESPV1501.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440286/PHESPV1501.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440286 PHESPV1501 ERR1440367 PHESPV1582 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440367 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440367 82bdcdb16f6c7dd9d9e42af468d32a6f;72971cd8e91b52a0f01b0d83ee5dd78f 1313 143342177 dd9e4455fd14ea66f3e1cb17751dc5f2;d34580007ff0a83fd2223b551065586b SAMEA4024636 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440367/ERR1440367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440367/ERR1440367_2.fastq.gz 1619996 WGS PHESPV1582 RANDOM 101847265;107779667 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 420ec2f5a9f379e3a6712957852098fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440367/ERR1440367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440367/ERR1440367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440367/PHESPV1582.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440367/PHESPV1582.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440367/ERR1440367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440367/ERR1440367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440367/PHESPV1582.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440367/PHESPV1582.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97746294;103609431 ERS1195746 ERX1510745 GENOMIC 319121372 2016-06-10 PHESPV1582 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440367/PHESPV1582.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440367/PHESPV1582.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440367 PHESPV1582 ERR1440287 PHESPV1502 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440287 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440287 5df6cdede4682bcbea2e38b10372dc64;738ce9fbb311e543e769d8fabf508809 1313 173629743 4508815a980981472c265d7febe3fbd5;7f93a159094eb5a86f2252f6cb49ec3a SAMEA4024556 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440287/ERR1440287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440287/ERR1440287_2.fastq.gz 2106303 WGS PHESPV1502 RANDOM 117820112;120670335 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ed8809f6f27d1c165de24d1214f70b2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440287/ERR1440287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440287/ERR1440287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440287/PHESPV1502.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440287/PHESPV1502.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440287/ERR1440287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440287/ERR1440287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440287/PHESPV1502.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440287/PHESPV1502.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124438144;127292029 ERS1195666 ERX1510665 GENOMIC 418641626 2016-06-10 PHESPV1502 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440287/PHESPV1502.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440287/PHESPV1502.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440287 PHESPV1502 ERR1440380 PHESPV1595 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440380 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440380 dad8c0947b34715af545a69da8222297;3232ec86e20682e2ae71596c1f881b5a 1313 130895536 daee38760948aaae16edbc034637efa3;4b3d6b06154c3f710e2d8f528fa934ec SAMEA4024649 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440380/ERR1440380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440380/ERR1440380_2.fastq.gz 1506500 WGS PHESPV1595 RANDOM 92729673;99090259 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cc90135e55ec7374f1eb70d07ad6ce1e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440380/ERR1440380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440380/ERR1440380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440380/PHESPV1595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440380/PHESPV1595.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440380/ERR1440380_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440380/ERR1440380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440380/PHESPV1595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440380/PHESPV1595.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88981293;95262926 ERS1195759 ERX1510758 GENOMIC 296103079 2016-06-10 PHESPV1595 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440380/PHESPV1595.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440380/PHESPV1595.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440380 PHESPV1595 ERR1440404 PHESPV1619 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440404 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440404 52d0ad83d89dfb90bec51db96eea8c84;499d24e7ea138310c0c07a8ce573caf6 1313 174042591 6e3013e1e96cbc134df602f27e74b0d1;d4d9e31d3c2a1588be4035cdb7a55119 SAMEA4024673 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440404/ERR1440404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440404/ERR1440404_2.fastq.gz 2054747 WGS PHESPV1619 RANDOM 125788517;129910870 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a2093aee5fdaa9acd48b3f85cbf4fa5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440404/ERR1440404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440404/ERR1440404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440404/PHESPV1619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440404/PHESPV1619.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440404/ERR1440404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440404/ERR1440404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440404/PHESPV1619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440404/PHESPV1619.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120549830;124627400 ERS1195783 ERX1510782 GENOMIC 399725376 2016-06-10 PHESPV1619 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440404/PHESPV1619.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440404/PHESPV1619.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440404 PHESPV1619 ERR1440413 PHESPV1628 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440413 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440413 a57565abad15f62a1de9e5c1ec1418ba;cff04762a9b10685960658dac935d083 1313 150612794 4c2ce44bfbc22b0542e321ef67da23cf;53d6c28128850c8505cf79c98059e504 SAMEA4024682 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440413/ERR1440413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440413/ERR1440413_2.fastq.gz 1649789 WGS PHESPV1628 RANDOM 108297097;110505055 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f702ec31d2cabccdef4869e6ac8a002f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440413/ERR1440413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440413/ERR1440413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440413/PHESPV1628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440413/PHESPV1628.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440413/ERR1440413_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440413/ERR1440413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440413/PHESPV1628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440413/PHESPV1628.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104029163;106225449 ERS1195792 ERX1510791 GENOMIC 323824247 2016-06-10 PHESPV1628 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440413/PHESPV1628.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440413/PHESPV1628.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440413 PHESPV1628 ERR1440405 PHESPV1620 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440405 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440405 ddd5190d001dc45ef5bc9c6fb06eda5c;811685564e281c41be91081f37702192 1313 88391858 f027fd3bce6c390d72650cf8426aa55b;035d9e00d3c7b7e846c30583d887cb4e SAMEA4024674 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440405/ERR1440405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440405/ERR1440405_2.fastq.gz 968284 WGS PHESPV1620 RANDOM 63870399;64821788 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96f9052b32a965042a3ed4941f3650c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440405/ERR1440405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440405/ERR1440405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440405/PHESPV1620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440405/PHESPV1620.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440405/ERR1440405_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440405/ERR1440405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440405/PHESPV1620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440405/PHESPV1620.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61470894;62419392 ERS1195784 ERX1510783 GENOMIC 190835867 2016-06-10 PHESPV1620 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440405/PHESPV1620.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440405/PHESPV1620.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440405 PHESPV1620 ERR1440385 PHESPV1600 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440385 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440385 76c6696c835edc31a30056fc47250a3f;dfd36362599d9b20330314f495ee0ae0 1313 202651989 36e49604c0133742a0dfadc295847fbd;6c805f5864b38502657a118411459b86 SAMEA4024654 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440385/ERR1440385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440385/ERR1440385_2.fastq.gz 2340490 WGS PHESPV1600 RANDOM 143642448;152801817 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d5737e2e11985a3a8e4f038733f274f5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440385/ERR1440385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440385/ERR1440385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440385/PHESPV1600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440385/PHESPV1600.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440385/ERR1440385_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440385/ERR1440385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440385/PHESPV1600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440385/PHESPV1600.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137836447;146947844 ERS1195764 ERX1510763 GENOMIC 460085548 2016-06-10 PHESPV1600 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440385/PHESPV1600.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440385/PHESPV1600.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440385 PHESPV1600 ERR1440473 PHESPV1688 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440473 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440473 037a04504b61331f6b11a7355662b6b1;dbf78b93d5859bd1cd7759216c71e860 1313 139299953 2397c3315d244cee9b64e0ec5e37e24b;36165efe1182d4c8dc9842c0d6ca59cc SAMEA4024742 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440473/ERR1440473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440473/ERR1440473_2.fastq.gz 1515437 WGS PHESPV1688 RANDOM 100826573;100389788 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e50ff8a0e7241c4da4442d79efc7a8d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440473/ERR1440473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440473/ERR1440473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440473/PHESPV1688.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440473/PHESPV1688.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440473/ERR1440473_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440473/ERR1440473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440473/PHESPV1688.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440473/PHESPV1688.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96906274;96495090 ERS1195852 ERX1510851 GENOMIC 292762981 2016-06-10 PHESPV1688 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440473/PHESPV1688.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440473/PHESPV1688.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440473 PHESPV1688 ERR1440504 PHESPV1719 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440504 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440504 c31696ae8768a9c083a5accdd6c627fe;c19a7b9cdf71a7fce039aa07c76d0702 1313 114539589 0fc0b6f54cc517ab019d3407ee7f2caa;2ce385478f5fca92708aa56776f348b4 SAMEA4024773 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440504/ERR1440504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440504/ERR1440504_2.fastq.gz 1266908 WGS PHESPV1719 RANDOM 82414673;83150767 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 23315f653516c5c5c42e6312acfcb510 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440504/ERR1440504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440504/ERR1440504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440504/PHESPV1719.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440504/PHESPV1719.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440504/ERR1440504_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440504/ERR1440504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440504/PHESPV1719.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440504/PHESPV1719.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79271328;80014945 ERS1195883 ERX1510882 GENOMIC 245798203 2016-06-10 PHESPV1719 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440504/PHESPV1719.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440504/PHESPV1719.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440504 PHESPV1719 ERR1438988 PHESPV0199 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438988 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438988 5168147871bdd90c07e323b16c89dceb;5fa20d0be1c0e483b43d962d52c1d94a 1313 99399612 b3fa89dc0b180a045b3d2da7ac3120a5;5474e8e72db5f523087ed251fc766122 SAMEA4023257 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438988/ERR1438988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438988/ERR1438988_2.fastq.gz 1258018 WGS PHESPV0199 RANDOM 67637990;69742315 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 568f2c4ba843ca91bee09380b836d0ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438988/ERR1438988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438988/ERR1438988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438988/PHESPV0199.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438988/PHESPV0199.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438988/ERR1438988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438988/ERR1438988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438988/PHESPV0199.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438988/PHESPV0199.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71870269;73933712 ERS1194367 ERX1509366 GENOMIC 247209987 2016-06-10 PHESPV0199 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438988/PHESPV0199.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438988/PHESPV0199.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438988 PHESPV0199 ERR1440565 PHESPV1780 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440565 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440565 7972025fd0b10d839e6b0d786a4b6214;3684ca377ba144f25f950bfee862e989 1313 111033434 97fc167b7864c605027ede4020ca72ac;5cd2eeb07227e0870217e3938d5114ce SAMEA4024834 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440565/ERR1440565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440565/ERR1440565_2.fastq.gz 1299653 WGS PHESPV1780 RANDOM 81598646;82440752 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4716af9e2ec851c71edf19b5619cb41f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440565/ERR1440565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440565/ERR1440565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440565/PHESPV1780.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440565/PHESPV1780.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440565/ERR1440565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440565/ERR1440565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440565/PHESPV1780.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440565/PHESPV1780.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78446655;79243811 ERS1195944 ERX1510943 GENOMIC 257356197 2016-06-10 PHESPV1780 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440565/PHESPV1780.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440565/PHESPV1780.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440565 PHESPV1780 ERR1440506 PHESPV1721 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440506 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440506 cfffc0f76a686722d20870df44f9cc54;3e20102f0b982e686660ca78eda4942a 1313 143421772 b942958f09599936c8462125c30f69bb;e0f368540075c054026fd74d9438486b SAMEA4024775 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440506/ERR1440506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440506/ERR1440506_2.fastq.gz 1614910 WGS PHESPV1721 RANDOM 103764188;103750674 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d9c143bfa016e2309476249bed736aba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440506/ERR1440506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440506/ERR1440506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440506/PHESPV1721.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440506/PHESPV1721.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440506/ERR1440506_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440506/ERR1440506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440506/PHESPV1721.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440506/PHESPV1721.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99553381;99552353 ERS1195885 ERX1510884 GENOMIC 308782170 2016-06-10 PHESPV1721 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440506/PHESPV1721.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440506/PHESPV1721.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440506 PHESPV1721 ERR1438862 PHESPV0072 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438862 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438862 3eed255f2afefc80aa0088b8abad334f;daefe58874803a906d84184deb6f5db9 1313 144942081 99249a9a46cac23b2419275bf13803b8;409775d32e0a3cf86e3c98f35a31cc10 SAMEA4023131 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438862/ERR1438862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438862/ERR1438862_2.fastq.gz 1696230 WGS PHESPV0072 RANDOM 96308328;101718703 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 544116c7c5750741fd1aa4693385e856 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438862/ERR1438862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438862/ERR1438862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438862/PHESPV0072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438862/PHESPV0072.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438862/ERR1438862_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438862/ERR1438862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438862/PHESPV0072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438862/PHESPV0072.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101873389;107251973 ERS1194241 ERX1509240 GENOMIC 337230330 2016-06-10 PHESPV0072 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438862/PHESPV0072.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438862/PHESPV0072.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438862 PHESPV0072 ERR1438868 PHESPV0078 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438868 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438868 615fce846e1b47a27b247e2acb2a00b5;323c69356f4111d0e5845e8fa310d83e 1313 141597965 1737ec1f5db7867236747480f87862e4;f1803ef8f91d38ebd10042375eab850b SAMEA4023137 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438868/ERR1438868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438868/ERR1438868_2.fastq.gz 1667377 WGS PHESPV0078 RANDOM 94657791;98991877 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b4ee01261ae23220efae2c9790f3807c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438868/ERR1438868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438868/ERR1438868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438868/PHESPV0078.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438868/PHESPV0078.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438868/ERR1438868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438868/ERR1438868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438868/PHESPV0078.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438868/PHESPV0078.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100129549;104453652 ERS1194247 ERX1509246 GENOMIC 331587680 2016-06-10 PHESPV0078 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438868/PHESPV0078.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438868/PHESPV0078.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438868 PHESPV0078 ERR1439173 PHESPV0384 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439173 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439173 92e1097d6a5bfa5dd6913dd64c43945e;208bf6e9eea6f5d9cf7947688062e4d9 1313 187372025 63ba0b48f07a77ccc8af50bca73d1554;86483944fc99d199bf96ec0a8f49eb21 SAMEA4023442 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439173/ERR1439173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439173/ERR1439173_2.fastq.gz 2028358 WGS PHESPV0384 RANDOM 135881655;134458900 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6acade1c4058fb802fc3693d522f8212 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439173/ERR1439173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439173/ERR1439173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439173/PHESPV0384.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439173/PHESPV0384.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439173/ERR1439173_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439173/ERR1439173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439173/PHESPV0384.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439173/PHESPV0384.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130602465;129206913 ERS1194552 ERX1509551 GENOMIC 398307632 2016-06-10 PHESPV0384 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439173/PHESPV0384.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439173/PHESPV0384.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439173 PHESPV0384 ERR1439213 PHESPV0424 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439213 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439213 06d7443d939ba91f18e5514576364038;464b2ac79bbb66eefb2317f334811a2e 1313 149978400 90fa88c1614a74d02a6c187aed28f713;e1202800960edcc851e42a40419f6eeb SAMEA4023482 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439213/ERR1439213_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439213/ERR1439213_2.fastq.gz 1632883 WGS PHESPV0424 RANDOM 108841066;107875326 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ea69ba5cc797daa31cd322f0febc9f87 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439213/ERR1439213_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439213/ERR1439213_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439213/PHESPV0424.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439213/PHESPV0424.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439213/ERR1439213_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439213/ERR1439213_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439213/PHESPV0424.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439213/PHESPV0424.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104575387;103636435 ERS1194592 ERX1509591 GENOMIC 319347108 2016-06-10 PHESPV0424 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439213/PHESPV0424.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439213/PHESPV0424.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439213 PHESPV0424 ERR1439186 PHESPV0397 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439186 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439186 c0b1388589511e3a1e7b3e09dcf44d32;b631aaae1db35e6ef43fc2e103a153db 1313 131036438 8cfb7cb4a8b54c1314c1bd2ede32733a;87bcccb988b6f6db87bf8da65e5647c0 SAMEA4023455 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439186/ERR1439186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439186/ERR1439186_2.fastq.gz 1405586 WGS PHESPV0397 RANDOM 93490829;95187239 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5c03f318e9d150d0c5c4562899eb1b7a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439186/ERR1439186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439186/ERR1439186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439186/PHESPV0397.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439186/PHESPV0397.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439186/ERR1439186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439186/ERR1439186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439186/PHESPV0397.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439186/PHESPV0397.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89897222;91595984 ERS1194565 ERX1509564 GENOMIC 275061221 2016-06-10 PHESPV0397 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439186/PHESPV0397.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439186/PHESPV0397.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439186 PHESPV0397 ERR1439285 PHESPV0496 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439285 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439285 e79d7873bf0e74e3a33427e9422ca362;83636edc558f9d81d53661a013d84a74 1313 138730598 d3fe3926d46a8e3013488528c571cfa5;3cd0334e556a88e085608f19d3ce0e83 SAMEA4023554 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439285/ERR1439285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439285/ERR1439285_2.fastq.gz 1500224 WGS PHESPV0496 RANDOM 99909929;100219440 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4e6f0aac7b610f055fb96754019294cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439285/ERR1439285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439285/ERR1439285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439285/PHESPV0496.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439285/PHESPV0496.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439285/ERR1439285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439285/ERR1439285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439285/PHESPV0496.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439285/PHESPV0496.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96062789;96384270 ERS1194664 ERX1509663 GENOMIC 293705919 2016-06-10 PHESPV0496 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439285/PHESPV0496.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439285/PHESPV0496.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439285 PHESPV0496 ERR1439367 PHESPV0578 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439367 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439367 53bbf77e2d3af0551a451567faad9fb8;f99c5a9dd9a02f6ab09197bbbf35b348 1313 173593674 8a5053680e727a9eaf039d428987d95a;1fed358cc224e1da75ff7250a799b853 SAMEA4023636 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439367/ERR1439367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439367/ERR1439367_2.fastq.gz 2174427 WGS PHESPV0578 RANDOM 117654861;121915618 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a21e27361d0a4833a1b5588dffc74ae ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439367/ERR1439367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439367/ERR1439367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439367/PHESPV0578.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439367/PHESPV0578.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439367/ERR1439367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439367/ERR1439367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439367/PHESPV0578.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439367/PHESPV0578.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124550414;128794753 ERS1194746 ERX1509745 GENOMIC 426792572 2016-06-10 PHESPV0578 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439367/PHESPV0578.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439367/PHESPV0578.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439367 PHESPV0578 ERR1439454 PHESPV0665 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439454 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439454 c135cbf666230a62a94afd81d44f069c;2406f7577fac5cc7140718ba7c6d175a 1313 113603711 500eea0bb770afe3db3e04e0a61656d2;c3ba3e3013a3c6bd66f64a51b637c7e2 SAMEA4023723 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439454/ERR1439454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439454/ERR1439454_2.fastq.gz 1248770 WGS PHESPV0665 RANDOM 81648940;82756146 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7d06a8e8126ce14b6984b71d93cc6ecd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439454/ERR1439454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439454/ERR1439454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439454/PHESPV0665.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439454/PHESPV0665.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439454/ERR1439454_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439454/ERR1439454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439454/PHESPV0665.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439454/PHESPV0665.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78500858;79618226 ERS1194833 ERX1509832 GENOMIC 245170597 2016-06-10 PHESPV0665 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439454/PHESPV0665.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439454/PHESPV0665.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439454 PHESPV0665 ERR1439590 PHESPV0801 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439590 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439590 8f4f05f2cdbe52cc7e24b952c7ba0886;886a024f7bd56380ebdf46199d636cad 1313 177103560 9de247e40d8b046f3aff036fff11fb6d;25b93d1e17c9e7ee12e381c128138671 SAMEA4023859 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439590/ERR1439590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439590/ERR1439590_2.fastq.gz 1858330 WGS PHESPV0801 RANDOM 125921778;128557075 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2f5e0663441fba7c995c70b01b7aea1d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439590/ERR1439590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439590/ERR1439590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439590/PHESPV0801.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439590/PHESPV0801.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439590/ERR1439590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439590/ERR1439590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439590/PHESPV0801.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439590/PHESPV0801.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121089366;123708689 ERS1194969 ERX1509968 GENOMIC 362355193 2016-06-10 PHESPV0801 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439590/PHESPV0801.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439590/PHESPV0801.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439590 PHESPV0801 ERR1439604 PHESPV0815 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439604 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439604 b955f60f66a9447a9b7172b96c820911;90f32e77255f8925199272d42239b7d5 1313 283812786 b0e2805cc3c61a0d667ecb8f82438f94;7ca461d7f18fd758d09768fc4a41e3da SAMEA4023873 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439604/ERR1439604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439604/ERR1439604_2.fastq.gz 2991815 WGS PHESPV0815 RANDOM 200390890;206257772 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5d419cbe6dfa23d0135cbdf9494c043 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439604/ERR1439604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439604/ERR1439604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439604/PHESPV0815.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439604/PHESPV0815.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439604/ERR1439604_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439604/ERR1439604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439604/PHESPV0815.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439604/PHESPV0815.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 192592477;198422165 ERS1194983 ERX1509982 GENOMIC 580633453 2016-06-10 PHESPV0815 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439604/PHESPV0815.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439604/PHESPV0815.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439604 PHESPV0815 ERR1439621 PHESPV0832 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439621 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439621 9e638d7cddce2cd8a1636ae50a5c935e;703efd79e7faaccaf0352df2af04c616 1313 147017062 694b3d8f83ed9163b7776ba97db8a912;cad18b0c1e98c90da9be244c3dca6b01 SAMEA4023890 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439621/ERR1439621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439621/ERR1439621_2.fastq.gz 1616622 WGS PHESPV0832 RANDOM 102115677;103185990 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ec1f5cc4d9c7d69bd93393e419cbeb0b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439621/ERR1439621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439621/ERR1439621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439621/PHESPV0832.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439621/PHESPV0832.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439621/ERR1439621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439621/ERR1439621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439621/PHESPV0832.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439621/PHESPV0832.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97855110;99007476 ERS1195000 ERX1509999 GENOMIC 295899498 2016-06-10 PHESPV0832 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439621/PHESPV0832.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439621/PHESPV0832.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439621 PHESPV0832 ERR1439627 PHESPV0838 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439627 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439627 2a0b600e150316e441970fe913f37227;f98f1aa0e8fc1471b9c6fa5435af5e4d 1313 241118673 78c6eab92765a664de24b2c45627a2ef;757e1f66a5c1430b546344618c699090 SAMEA4023896 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439627/ERR1439627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439627/ERR1439627_2.fastq.gz 2559134 WGS PHESPV0838 RANDOM 170865155;174309792 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f7e85b852b252f810e01c4ac7e1bed04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439627/ERR1439627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439627/ERR1439627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439627/PHESPV0838.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439627/PHESPV0838.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439627/ERR1439627_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439627/ERR1439627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439627/PHESPV0838.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439627/PHESPV0838.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 164374621;167807146 ERS1195006 ERX1510005 GENOMIC 492971342 2016-06-10 PHESPV0838 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439627/PHESPV0838.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439627/PHESPV0838.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439627 PHESPV0838 ERR1439643 PHESPV0854 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439643 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439643 ca70f76b8af1ae69e5c3679c460b529b;122e6872a3b3ed64de61ecc2932a9903 1313 229742836 ef1c816db495fb6a29650595d2c1449e;aa3b1338b624075a5853995f9baa0d76 SAMEA4023912 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439643/ERR1439643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439643/ERR1439643_2.fastq.gz 2447055 WGS PHESPV0854 RANDOM 164812180;165576887 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9d69339d9e86cdf164957670eaa07c5f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439643/ERR1439643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439643/ERR1439643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439643/PHESPV0854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439643/PHESPV0854.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439643/ERR1439643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439643/ERR1439643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439643/PHESPV0854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439643/PHESPV0854.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 158624834;159378100 ERS1195022 ERX1510021 GENOMIC 480019616 2016-06-10 PHESPV0854 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439643/PHESPV0854.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439643/PHESPV0854.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439643 PHESPV0854 ERR1439673 PHESPV0884 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439673 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439673 1d3dddf3afbb512ed89fdfb30b491681;a212954ec31b1d105208d0220c996705 1313 158365672 77eda661c8c4dd75f5fd2f4608dbcf5b;865908a98f4b21344d09c6c27a2858d4 SAMEA4023942 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439673/ERR1439673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439673/ERR1439673_2.fastq.gz 1758405 WGS PHESPV0884 RANDOM 113393482;116425107 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62784f05ff274c5ac32b62b926b5f82e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439673/ERR1439673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439673/ERR1439673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439673/PHESPV0884.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439673/PHESPV0884.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439673/ERR1439673_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439673/ERR1439673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439673/PHESPV0884.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439673/PHESPV0884.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108733248;111763643 ERS1195052 ERX1510051 GENOMIC 341355888 2016-06-10 PHESPV0884 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439673/PHESPV0884.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439673/PHESPV0884.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439673 PHESPV0884 ERR1439692 PHESPV0903 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439692 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439692 0cfbccc491d338cd6b59a680a3231d51;2e4c78b2f37cb41e8d4f3bcb2a183a09 1313 166004782 a7e37e9e50c3c6dbc97ce43a9b271790;07ad3272b8d67a733805da83aef14919 SAMEA4023961 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439692/ERR1439692_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439692/ERR1439692_2.fastq.gz 1859409 WGS PHESPV0903 RANDOM 120897253;120518567 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 86ec985159dfbddf3b43bd42848088d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439692/ERR1439692_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439692/ERR1439692_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439692/PHESPV0903.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439692/PHESPV0903.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439692/ERR1439692_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439692/ERR1439692_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439692/PHESPV0903.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439692/PHESPV0903.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116006069;115655562 ERS1195071 ERX1510070 GENOMIC 360730413 2016-06-10 PHESPV0903 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439692/PHESPV0903.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439692/PHESPV0903.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439692 PHESPV0903 ERR1439694 PHESPV0905 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439694 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439694 44f36b2309c62c9c18c88f26f48611e7;2ab6c254d049797056f45527f040e7fb 1313 184199007 0822973ec690e784cd82b2275c7bb5f5;aa7edfb111cab1078ad83aa9716da73e SAMEA4023963 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439694/ERR1439694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439694/ERR1439694_2.fastq.gz 2054149 WGS PHESPV0905 RANDOM 133085864;134417295 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c8e0fccf1f09f045aa913f5b66183122 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439694/ERR1439694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439694/ERR1439694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439694/PHESPV0905.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439694/PHESPV0905.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439694/ERR1439694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439694/ERR1439694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439694/PHESPV0905.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439694/PHESPV0905.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127742492;129088559 ERS1195073 ERX1510072 GENOMIC 400541220 2016-06-10 PHESPV0905 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439694/PHESPV0905.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439694/PHESPV0905.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439694 PHESPV0905 ERR1439713 PHESPV0924 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439713 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439713 11d609016ce8b54e354188ee8030e41b;ac77245722a3ba1bc7cc4de70ba439dd 1313 174708676 fd4a4e273a7e4a0303f316b2ecd6a010;974556f2bb952c2673f2b2305529d6fd SAMEA4023982 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439713/ERR1439713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439713/ERR1439713_2.fastq.gz 1979576 WGS PHESPV0924 RANDOM 126734077;126708384 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a18c5567d2f11ee5782650ebbef9e165 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439713/ERR1439713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439713/ERR1439713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439713/PHESPV0924.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439713/PHESPV0924.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439713/ERR1439713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439713/ERR1439713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439713/PHESPV0924.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439713/PHESPV0924.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121580095;121581186 ERS1195092 ERX1510091 GENOMIC 379836192 2016-06-10 PHESPV0924 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439713/PHESPV0924.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439713/PHESPV0924.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439713 PHESPV0924 ERR1439739 PHESPV0950 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439739 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439739 a13b2bfa71b278603f8b5ac3d94fee8b;c3500193c34ccc7c8ce5b6ea5ed75b21 1313 146550513 5abc7043d578987c1c03df55b04abecf;11d36385c524d87a6ac8d33f734937ef SAMEA4024008 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439739/ERR1439739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439739/ERR1439739_2.fastq.gz 1624927 WGS PHESPV0950 RANDOM 106242299;106702298 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 937908542f22667f7080eb1efb2ac105 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439739/ERR1439739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439739/ERR1439739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439739/PHESPV0950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439739/PHESPV0950.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439739/ERR1439739_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439739/ERR1439739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439739/PHESPV0950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439739/PHESPV0950.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101996291;102473857 ERS1195118 ERX1510117 GENOMIC 316444341 2016-06-10 PHESPV0950 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439739/PHESPV0950.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439739/PHESPV0950.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439739 PHESPV0950 ERR1439768 PHESPV0979 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439768 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439768 65a4584438a8deae5e8a66508ea5e55f;917186c6b515c2052ed55894fe13290e 1313 159318736 8793fd388b8c45d8ed455347e6492a71;d994889e67865c2aa802d49cc3ae51f7 SAMEA4024037 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439768/ERR1439768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439768/ERR1439768_2.fastq.gz 1798242 WGS PHESPV0979 RANDOM 115032951;116441223 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0e795793b023a126dbd7cda76edb0ec0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439768/ERR1439768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439768/ERR1439768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439768/PHESPV0979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439768/PHESPV0979.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439768/ERR1439768_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439768/ERR1439768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439768/PHESPV0979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439768/PHESPV0979.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110273119;111698610 ERS1195147 ERX1510146 GENOMIC 344288648 2016-06-10 PHESPV0979 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439768/PHESPV0979.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439768/PHESPV0979.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439768 PHESPV0979 ERR1439762 PHESPV0973 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439762 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439762 6e2324c4ed9031c2c315ec8c70d3a632;defd63f6c7482ceadd0e0470004c416a 1313 147541859 baaa77ec693b1ade42e6d990535d4912;9018e7658927f0726e86035b183e0d30 SAMEA4024031 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439762/ERR1439762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439762/ERR1439762_2.fastq.gz 1695763 WGS PHESPV0973 RANDOM 107256634;107461445 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c95dada1e172764e3e121728e8b24000 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439762/ERR1439762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439762/ERR1439762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439762/PHESPV0973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439762/PHESPV0973.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439762/ERR1439762_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439762/ERR1439762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439762/PHESPV0973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439762/PHESPV0973.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102801587;103036302 ERS1195141 ERX1510140 GENOMIC 320656460 2016-06-10 PHESPV0973 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439762/PHESPV0973.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439762/PHESPV0973.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439762 PHESPV0973 ERR1439785 PHESPV0996 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439785 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439785 dabf6d3ac0e808905f842e72dc9765b2;89b22f3dd6bc16a9b7fbb310acb732ea 1313 156874027 78eb861f734de9f4472fc2454d4d6257;f7d827f37c6f2ddd43632f62bc222602 SAMEA4024054 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439785/ERR1439785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439785/ERR1439785_2.fastq.gz 1756085 WGS PHESPV0996 RANDOM 113871986;113781163 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 72df9da5badae0a46d872da4f992b51c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439785/ERR1439785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439785/ERR1439785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439785/PHESPV0996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439785/PHESPV0996.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439785/ERR1439785_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439785/ERR1439785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439785/PHESPV0996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439785/PHESPV0996.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109255129;109188356 ERS1195164 ERX1510163 GENOMIC 336396536 2016-06-10 PHESPV0996 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439785/PHESPV0996.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439785/PHESPV0996.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439785 PHESPV0996 ERR1439800 PHESPV1011 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439800 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439800 5c7aacc4e5e02ed343db02cb5e698008;9a971fdfe85a9124b816e8b1bcede022 1313 154208422 63245a37018b396c029fd457b80d167e;7606e2688a72fc0fc44c84356de978dd SAMEA4024069 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439800/ERR1439800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439800/ERR1439800_2.fastq.gz 1690621 WGS PHESPV1011 RANDOM 110284585;112681035 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f9f11c6eee228248d8ebfabd1c557814 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439800/ERR1439800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439800/ERR1439800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439800/PHESPV1011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439800/PHESPV1011.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439800/ERR1439800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439800/ERR1439800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439800/PHESPV1011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439800/PHESPV1011.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105849365;108244652 ERS1195179 ERX1510178 GENOMIC 326217410 2016-06-10 PHESPV1011 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439800/PHESPV1011.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439800/PHESPV1011.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439800 PHESPV1011 ERR1439787 PHESPV0998 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439787 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439787 ee3177801709a049528e8d83314d847c;fdf3436ebac4515454cafc6dea11f8ba 1313 148234561 affb4948bac4b2a36da58134e2add6d7;428482848c39a1acf4b347395923c9d3 SAMEA4024056 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439787/ERR1439787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439787/ERR1439787_2.fastq.gz 1643062 WGS PHESPV0998 RANDOM 107836889;107451080 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7705db2ed02ac3bb52f4c56b2c8d73c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439787/ERR1439787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439787/ERR1439787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439787/PHESPV0998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439787/PHESPV0998.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439787/ERR1439787_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439787/ERR1439787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439787/PHESPV0998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439787/PHESPV0998.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103533136;103173731 ERS1195166 ERX1510165 GENOMIC 319007094 2016-06-10 PHESPV0998 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439787/PHESPV0998.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439787/PHESPV0998.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439787 PHESPV0998 ERR1439827 PHESPV1038 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439827 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439827 778dd6d1e58ba30e8481e2fffd767dcb;0425ffc637cb09d60aece00b10f5ba8c 1313 170051868 b6dea8c8918a6f0ddab200f47fde982d;5bd1d9fdba6ab17f30431e2070194deb SAMEA4024096 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439827/ERR1439827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439827/ERR1439827_2.fastq.gz 1914768 WGS PHESPV1038 RANDOM 123371598;123131361 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c4dcbb9a671a2a0a6b0842a95d3442d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439827/ERR1439827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439827/ERR1439827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439827/PHESPV1038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439827/PHESPV1038.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439827/ERR1439827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439827/ERR1439827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439827/PHESPV1038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439827/PHESPV1038.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118355804;118140927 ERS1195206 ERX1510205 GENOMIC 364521975 2016-06-10 PHESPV1038 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439827/PHESPV1038.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439827/PHESPV1038.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439827 PHESPV1038 ERR1439828 PHESPV1039 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439828 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439828 95a2d5db98c6751194c003cdc77d02cd;af64cb5b5ae60d9224390a5c89d9046e 1313 137461932 ba27c31221ba344dced8b09ec1149970;f0c65de5caf66bfb37cf09e6a0a3bc44 SAMEA4024097 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439828/ERR1439828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439828/ERR1439828_2.fastq.gz 1498257 WGS PHESPV1039 RANDOM 98720739;100348395 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 77fb2de128b2aa0384adf26bae170d81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439828/ERR1439828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439828/ERR1439828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439828/PHESPV1039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439828/PHESPV1039.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439828/ERR1439828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439828/ERR1439828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439828/PHESPV1039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439828/PHESPV1039.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94889424;96519143 ERS1195207 ERX1510206 GENOMIC 292954954 2016-06-10 PHESPV1039 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439828/PHESPV1039.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439828/PHESPV1039.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439828 PHESPV1039 ERR1439842 PHESPV1053 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439842 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439842 2599060c00ad4a906b7b839149f466e6;ed30ffc05afb75f733d774089ff20037 1313 184990698 cb703e7320b44e1acad113d9637e061c;415858acacce24f4add24e61ba8c7a29 SAMEA4024111 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439842/ERR1439842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439842/ERR1439842_2.fastq.gz 2041185 WGS PHESPV1053 RANDOM 133463477;134249945 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff6f9355419fb3390c900cc78610385d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439842/ERR1439842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439842/ERR1439842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439842/PHESPV1053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439842/PHESPV1053.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439842/ERR1439842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439842/ERR1439842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439842/PHESPV1053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439842/PHESPV1053.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128155761;128955046 ERS1195221 ERX1510220 GENOMIC 395764634 2016-06-10 PHESPV1053 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439842/PHESPV1053.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439842/PHESPV1053.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439842 PHESPV1053 ERR1439891 PHESPV1102 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439891 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439891 a2b9e1b1b2a1325f41f1781770482568;b8b3293bedec485ee3e039643c583368 1313 147778272 8daa9f709c271649489c6065144fea14;2cc4564f390e96438a412c54bdf9d6cc SAMEA4024160 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439891/ERR1439891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439891/ERR1439891_2.fastq.gz 1587874 WGS PHESPV1102 RANDOM 106167927;106534789 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c60c324eb72c24db22c1764d57a5b550 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439891/ERR1439891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439891/ERR1439891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439891/PHESPV1102.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439891/PHESPV1102.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439891/ERR1439891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439891/ERR1439891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439891/PHESPV1102.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439891/PHESPV1102.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102004607;102407780 ERS1195270 ERX1510269 GENOMIC 306213738 2016-06-10 PHESPV1102 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439891/PHESPV1102.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439891/PHESPV1102.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439891 PHESPV1102 ERR1439843 PHESPV1054 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439843 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439843 049cf71eba50ca90458b10e0aca74af2;fb72eda667ea26c0fb59d095d1cda538 1313 138875356 de2a784ac08214ac7dbf60bab88570d5;4b5860e23509d7bdf74a5521f3cf62a2 SAMEA4024112 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439843/ERR1439843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439843/ERR1439843_2.fastq.gz 1525007 WGS PHESPV1054 RANDOM 100040902;101309002 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ef9adb539a643a98a49e68b7051fb6f8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439843/ERR1439843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439843/ERR1439843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439843/PHESPV1054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439843/PHESPV1054.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439843/ERR1439843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439843/ERR1439843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439843/PHESPV1054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439843/PHESPV1054.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96126105;97400440 ERS1195222 ERX1510221 GENOMIC 297760738 2016-06-10 PHESPV1054 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439843/PHESPV1054.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439843/PHESPV1054.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439843 PHESPV1054 ERR1440250 PHESPV1465 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440250 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440250 3a986dcb009e4f4d7bce1c3a5adb4717;c3496c1ea4d835bf4fabaef574a24285 1313 146151658 8db55aa74f49382a5c8b6fd09bc68d47;1bb768230e0b84139e70a0faeff9a4a5 SAMEA4024519 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440250/ERR1440250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440250/ERR1440250_2.fastq.gz 1559336 WGS PHESPV1465 RANDOM 104168344;105563865 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ef80c91555eb20001373ec7fbb526b27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440250/ERR1440250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440250/ERR1440250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440250/PHESPV1465.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440250/PHESPV1465.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440250/ERR1440250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440250/ERR1440250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440250/PHESPV1465.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440250/PHESPV1465.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100104483;101518375 ERS1195629 ERX1510628 GENOMIC 297635129 2016-06-10 PHESPV1465 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440250/PHESPV1465.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440250/PHESPV1465.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440250 PHESPV1465 ERR1440256 PHESPV1471 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440256 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440256 1e41ebcb4f21ffbcf71c158b95bc8712;7686b18fad3736f3e828580f57927d2b 1313 127085091 a97931c2bb9ab2cb5ee614b9d6441c41;dab995aab69915588819c731c7a30c7f SAMEA4024525 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440256/ERR1440256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440256/ERR1440256_2.fastq.gz 1375540 WGS PHESPV1471 RANDOM 91269686;91387338 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bce5f7c94644c7d977cad50a138f7ad0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440256/ERR1440256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440256/ERR1440256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440256/PHESPV1471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440256/PHESPV1471.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440256/ERR1440256_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440256/ERR1440256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440256/PHESPV1471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440256/PHESPV1471.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87763187;87906142 ERS1195635 ERX1510634 GENOMIC 260823387 2016-06-10 PHESPV1471 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440256/PHESPV1471.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440256/PHESPV1471.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440256 PHESPV1471 ERR1440298 PHESPV1513 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440298 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440298 e9d8e7a57a8e3f3407aa096e1e010f82;7099518f5d9c0c7533036a054b7620ce 1313 152005080 b6bdab7e7b78d1b32e1c92e0ab426329;67be4eed00c72ee12e50d8aec36917bc SAMEA4024567 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440298/ERR1440298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440298/ERR1440298_2.fastq.gz 1794935 WGS PHESPV1513 RANDOM 100417471;107259946 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1b3200a928c93c891ead7c2c2a0ccd51 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440298/ERR1440298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440298/ERR1440298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440298/PHESPV1513.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440298/PHESPV1513.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440298/ERR1440298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440298/ERR1440298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440298/PHESPV1513.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440298/PHESPV1513.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106227566;113053208 ERS1195677 ERX1510676 GENOMIC 356061568 2016-06-10 PHESPV1513 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440298/PHESPV1513.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440298/PHESPV1513.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440298 PHESPV1513 ERR1440425 PHESPV1640 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440425 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440425 794f89b7bb38ff129d292bf8afee580e;75df4059771585e458f649e3b548e019 1313 136882868 7430708b6e0c9f8249c6fd31f554292f;d981cd7a256ee5f979d2a7e2a928527f SAMEA4024694 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440425/ERR1440425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440425/ERR1440425_2.fastq.gz 1519096 WGS PHESPV1640 RANDOM 98685875;100068324 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d110ae48748962b054ac7ddf3e1bf2b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440425/ERR1440425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440425/ERR1440425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440425/PHESPV1640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440425/PHESPV1640.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440425/ERR1440425_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440425/ERR1440425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440425/PHESPV1640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440425/PHESPV1640.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94817963;96198487 ERS1195804 ERX1510803 GENOMIC 293980025 2016-06-10 PHESPV1640 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440425/PHESPV1640.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440425/PHESPV1640.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440425 PHESPV1640 ERR1440268 PHESPV1483 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440268 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440268 6af4172561aecc6a9fcd4c7895e87bf6;ebbf5d32d836d16116861bbf43057f30 1313 153683126 9a4df8a07a137bc2018f6a576cd6862b;acc16e550858e4987e64be6eeacabf46 SAMEA4024537 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440268/ERR1440268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440268/ERR1440268_2.fastq.gz 1848325 WGS PHESPV1483 RANDOM 103395547;107371407 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a2810a2ceea99d6d5e5c9eed4c97a88c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440268/ERR1440268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440268/ERR1440268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440268/PHESPV1483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440268/PHESPV1483.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440268/ERR1440268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440268/ERR1440268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440268/PHESPV1483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440268/PHESPV1483.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109377859;113339949 ERS1195647 ERX1510646 GENOMIC 367140085 2016-06-10 PHESPV1483 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440268/PHESPV1483.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440268/PHESPV1483.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440268 PHESPV1483 ERR1440332 PHESPV1547 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440332 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440332 e82423a47176cedf32a1fc5688e850fc;06c21bd034e82c90b26ad1e2dd3d939a 1313 161948735 d3885cdf5c2fec4f4a3833be337dc1d9;a9776578648917402163f0aca677ff22 SAMEA4024601 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440332/ERR1440332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440332/ERR1440332_2.fastq.gz 1897587 WGS PHESPV1547 RANDOM 117354239;121091051 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4ccc541108caf81374dfa8579e1c6236 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440332/ERR1440332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440332/ERR1440332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440332/PHESPV1547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440332/PHESPV1547.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440332/ERR1440332_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440332/ERR1440332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440332/PHESPV1547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440332/PHESPV1547.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112480088;116173279 ERS1195711 ERX1510710 GENOMIC 373042520 2016-06-10 PHESPV1547 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440332/PHESPV1547.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440332/PHESPV1547.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440332 PHESPV1547 ERR1440602 PHESPV1817 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440602 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440602 e91861b69cb70cb2a08ebef8d6fb6c07;20b4377744e85b7d504a35a7667defe9 1313 86897388 3d13b98a7e999903cc5d196ad20eaaa0;635d7f66813f8ab4f4e0c74b55f5e1d9 SAMEA4024871 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440602/ERR1440602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440602/ERR1440602_2.fastq.gz 974454 WGS PHESPV1817 RANDOM 61211379;65108594 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b3154f49678bdb6f9ec9a32ad622fb33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440602/ERR1440602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440602/ERR1440602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440602/PHESPV1817.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440602/PHESPV1817.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440602/ERR1440602_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440602/ERR1440602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440602/PHESPV1817.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440602/PHESPV1817.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58759625;62601095 ERS1195981 ERX1510980 GENOMIC 190694557 2016-06-10 PHESPV1817 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440602/PHESPV1817.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440602/PHESPV1817.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440602 PHESPV1817 ERR1440620 PHESPV1835 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440620 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440620 e7062df6857fff673cc3b3b416eea42a;19044b2732e242469381732965ba7af8 1313 97387346 781e33c393df79f2836fed909a51a529;78f78660fbaff6a651bf59044211605e SAMEA4024889 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440620/ERR1440620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440620/ERR1440620_2.fastq.gz 1099489 WGS PHESPV1835 RANDOM 69121124;72635594 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 092443af54c8cd556fcab0713f790c4c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440620/ERR1440620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440620/ERR1440620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440620/PHESPV1835.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440620/PHESPV1835.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440620/ERR1440620_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440620/ERR1440620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440620/PHESPV1835.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440620/PHESPV1835.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 66345356;69809914 ERS1195999 ERX1510998 GENOMIC 215211953 2016-06-10 PHESPV1835 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440620/PHESPV1835.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440620/PHESPV1835.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440620 PHESPV1835 ERR1440637 PHESPV1852 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440637 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440637 a5e8d7183d2b60c4fdad86a87e020b5d;5202e1b73bfa5fc3a2b5cc8c61c28afe 1313 82618817 c17e5a6e8cc4718ecdddc700cafa72b7;6c3a090f7ff83bd80cf3c56b30cb1761 SAMEA4024906 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440637/ERR1440637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440637/ERR1440637_2.fastq.gz 935463 WGS PHESPV1852 RANDOM 59037988;61482303 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96334db2d5a33e7b8972cee64dd317a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440637/ERR1440637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440637/ERR1440637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440637/PHESPV1852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440637/PHESPV1852.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440637/ERR1440637_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440637/ERR1440637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440637/PHESPV1852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440637/PHESPV1852.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 56704350;59109031 ERS1196016 ERX1511015 GENOMIC 183303673 2016-06-10 PHESPV1852 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440637/PHESPV1852.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440637/PHESPV1852.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440637 PHESPV1852 ERR1440655 PHESPV1870 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440655 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440655 dbd984a721a96d5590204563b38f4866;e4228fafd56edeb4cd571d014e50c2c0 1313 163382815 97f189e5c0eb8febcfffb05ae2a1c558;d40b05421c87ba03c459d38957369761 SAMEA4024924 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440655/ERR1440655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440655/ERR1440655_2.fastq.gz 1842522 WGS PHESPV1870 RANDOM 116876093;120970064 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 44e9fc4e914682fd81eff21084e911fd ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440655/ERR1440655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440655/ERR1440655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440655/PHESPV1870.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440655/PHESPV1870.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440655/ERR1440655_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440655/ERR1440655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440655/PHESPV1870.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440655/PHESPV1870.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112088621;116138875 ERS1196034 ERX1511033 GENOMIC 362213636 2016-06-10 PHESPV1870 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440655/PHESPV1870.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440655/PHESPV1870.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440655 PHESPV1870 ERR1440624 PHESPV1839 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440624 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440624 323d79764266435d9fcfa290f16f0b85;9a9e2d65576f7dda3847671febf97bc1 1313 122656942 ce5de48a50db109ece9e0b8e5a222963;35d6b57705bece3520cab87b7b07decd SAMEA4024893 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440624/ERR1440624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440624/ERR1440624_2.fastq.gz 1386294 WGS PHESPV1839 RANDOM 87214623;91326432 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6d9d9624d6fd4b2ee50e6a4466693995 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440624/ERR1440624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440624/ERR1440624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440624/PHESPV1839.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440624/PHESPV1839.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440624/ERR1440624_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440624/ERR1440624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440624/PHESPV1839.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440624/PHESPV1839.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83742528;87802217 ERS1196003 ERX1511002 GENOMIC 271981900 2016-06-10 PHESPV1839 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440624/PHESPV1839.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440624/PHESPV1839.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440624 PHESPV1839 ERR1440641 PHESPV1856 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440641 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440641 e631bd20b13de6151197e5a3f9b5424d;a4cb1a4b8281522f87996245c06b7044 1313 126044954 554053ad6b4a9b2f503b74026e0cd5a9;bff78c62604c507e60338fa3bef305df SAMEA4024910 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440641/ERR1440641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440641/ERR1440641_2.fastq.gz 1422197 WGS PHESPV1856 RANDOM 89681604;93772468 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 28cb36418266f3799d32617d487e3560 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440641/ERR1440641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440641/ERR1440641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440641/PHESPV1856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440641/PHESPV1856.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440641/ERR1440641_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440641/ERR1440641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440641/PHESPV1856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440641/PHESPV1856.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86099884;90137039 ERS1196020 ERX1511019 GENOMIC 279490186 2016-06-10 PHESPV1856 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440641/PHESPV1856.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440641/PHESPV1856.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440641 PHESPV1856 ERR1440660 PHESPV1875 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440660 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440660 7a61433d88a22c194b63a61411687f5d;d21d710590dac8ab34763360e5544bc4 1313 96276676 04a4dd13201cc19794dd2f8f5c30eee5;e7c851f0aba8cb1a726e10745beb8afb SAMEA4024929 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440660/ERR1440660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440660/ERR1440660_2.fastq.gz 1088926 WGS PHESPV1875 RANDOM 68354362;71746777 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 28f1d929d371065042c4acc85e91164e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440660/ERR1440660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440660/ERR1440660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440660/PHESPV1875.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440660/PHESPV1875.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440660/ERR1440660_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440660/ERR1440660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440660/PHESPV1875.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440660/PHESPV1875.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 65625485;68968076 ERS1196039 ERX1511038 GENOMIC 212549357 2016-06-10 PHESPV1875 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440660/PHESPV1875.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440660/PHESPV1875.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440660 PHESPV1875 ERR1440689 PHESPV1904 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440689 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440689 240d1b813a165942d4b0de0c29e40be4;3cbbe83c0db5d8a1fb5613caaeb1872a 1313 114859613 6cf2f82abdf61e08c15304e68c5d03ad;f317201f9b4246ea00f9a8173a5bee92 SAMEA4024958 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440689/ERR1440689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440689/ERR1440689_2.fastq.gz 1226048 WGS PHESPV1904 RANDOM 81546149;82022014 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e28429638f204aeaae1765090fac63a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440689/ERR1440689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440689/ERR1440689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440689/PHESPV1904.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440689/PHESPV1904.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440689/ERR1440689_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440689/ERR1440689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440689/PHESPV1904.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440689/PHESPV1904.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78388526;78860476 ERS1196068 ERX1511067 GENOMIC 238458651 2016-06-10 PHESPV1904 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440689/PHESPV1904.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440689/PHESPV1904.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440689 PHESPV1904 ERR1439087 PHESPV0298 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439087 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439087 151ca0617644bb16156156a16c8e8e8e;be73d152c3bf03821b58fe9063120081 1313 188021512 366333ecfc7afea54968e918ab6f99b1;76cd01877071fd56ddd2aefa29147499 SAMEA4023356 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439087/ERR1439087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439087/ERR1439087_2.fastq.gz 1582948 WGS PHESPV0298 RANDOM 113928111;119725249 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7f3a53db620fa2719ec62637638da1a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439087/ERR1439087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439087/ERR1439087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439087/PHESPV0298.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439087/PHESPV0298.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439087/ERR1439087_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439087/ERR1439087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439087/PHESPV0298.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439087/PHESPV0298.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119026234;124835089 ERS1194466 ERX1509465 GENOMIC 309921323 2016-06-10 PHESPV0298 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439087/PHESPV0298.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439087/PHESPV0298.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439087 PHESPV0298 ERR1439100 PHESPV0311 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439100 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439100 0a58b0cc25e7d06c9521d84136faf058;9e5061c9229aa0c4ac5464f6e03d6c5e 1313 146834178 01eb5d3ecc68db4cf8a938c573c41ca1;4b7fbda8947837921ba28d387b2b7096 SAMEA4023369 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439100/ERR1439100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439100/ERR1439100_2.fastq.gz 1237913 WGS PHESPV0311 RANDOM 89140951;93763376 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3ccf1eaa08ca05772c07344282495927 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439100/ERR1439100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439100/ERR1439100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439100/PHESPV0311.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439100/PHESPV0311.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439100/ERR1439100_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439100/ERR1439100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439100/PHESPV0311.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439100/PHESPV0311.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93274982;97902391 ERS1194479 ERX1509478 GENOMIC 242434127 2016-06-10 PHESPV0311 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439100/PHESPV0311.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439100/PHESPV0311.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439100 PHESPV0311 ERR1439180 PHESPV0391 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439180 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439180 62df80c8c7d814180a3ece1576b91564;70a976c075aa6392b25ce5ae31f1bc42 1313 251974167 ba4979c531a0f32cdec7ac3279abdef8;42c82b05cb84e7a83ed4fc9beffe7ee4 SAMEA4023449 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439180/ERR1439180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439180/ERR1439180_2.fastq.gz 3103796 WGS PHESPV0391 RANDOM 170691415;174970081 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2558205287dd295f0bb8a7dbed79c095 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439180/ERR1439180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439180/ERR1439180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439180/PHESPV0391.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439180/PHESPV0391.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439180/ERR1439180_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439180/ERR1439180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439180/PHESPV0391.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439180/PHESPV0391.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 180118000;184367750 ERS1194559 ERX1509558 GENOMIC 606873351 2016-06-10 PHESPV0391 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439180/PHESPV0391.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439180/PHESPV0391.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439180 PHESPV0391 ERR1439343 PHESPV0554 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439343 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439343 63cc143668a631e6de5441aa96695b17;d59fce32fecb872e8562e24e561ed6e7 1313 113061873 946a541011a016d509db4b64442082d9;6660bc7e3702b017f43e08bae0e0de8b SAMEA4023612 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439343/ERR1439343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439343/ERR1439343_2.fastq.gz 1241896 WGS PHESPV0554 RANDOM 80632106;82357512 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 764a1d75dd981fcc3f798c7c82fdf481 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439343/ERR1439343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439343/ERR1439343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439343/PHESPV0554.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439343/PHESPV0554.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439343/ERR1439343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439343/ERR1439343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439343/PHESPV0554.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439343/PHESPV0554.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77467443;79197068 ERS1194722 ERX1509721 GENOMIC 240574856 2016-06-10 PHESPV0554 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439343/PHESPV0554.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439343/PHESPV0554.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439343 PHESPV0554 ERR1439363 PHESPV0574 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439363 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439363 4f85ab38b7ceb29396b469fac4844f71;2c71872f7df3b93e4fba584834168a3e 1313 193843689 af2c9a635a483be51da5de96ffd2c1c1;00ac9aec881557b475cc6da670e252e6 SAMEA4023632 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439363/ERR1439363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439363/ERR1439363_2.fastq.gz 2434380 WGS PHESPV0574 RANDOM 131634526;136139088 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21756c8b02d39376503c2aa220236694 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439363/ERR1439363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439363/ERR1439363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439363/PHESPV0574.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439363/PHESPV0574.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439363/ERR1439363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439363/ERR1439363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439363/PHESPV0574.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439363/PHESPV0574.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 139214441;143714962 ERS1194742 ERX1509741 GENOMIC 478115500 2016-06-10 PHESPV0574 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439363/PHESPV0574.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439363/PHESPV0574.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439363 PHESPV0574 ERR1439386 PHESPV0597 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439386 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439386 9e758a25500ee36c269467f89013de67;87cdb13c2e8326fd6d0fdd00c0b1a610 1313 122475668 fac9b2c675afa890678ea330017ee830;618312d7ced451274a7d3688ae132dd0 SAMEA4023655 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439386/ERR1439386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439386/ERR1439386_2.fastq.gz 1358873 WGS PHESPV0597 RANDOM 88991323;88832724 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4112c8778f36470f6a0149f61d753431 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439386/ERR1439386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439386/ERR1439386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439386/PHESPV0597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439386/PHESPV0597.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439386/ERR1439386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439386/ERR1439386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439386/PHESPV0597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439386/PHESPV0597.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85562533;85426895 ERS1194765 ERX1509764 GENOMIC 266932621 2016-06-10 PHESPV0597 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439386/PHESPV0597.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439386/PHESPV0597.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439386 PHESPV0597 ERR1439389 PHESPV0600 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439389 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439389 e373f6a71b4aab7315525e5f5295b262;9905cd7faf9c7e3a846d9719d53534a2 1313 188253465 450c0f2757a9499a0dfa817044b1e5f6;e328b958fc521ace621f6f3b8b817b11 SAMEA4023658 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439389/ERR1439389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439389/ERR1439389_2.fastq.gz 2343413 WGS PHESPV0600 RANDOM 127117780;132312543 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab9a85a222ef3996adbe0266c56d789e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439389/ERR1439389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439389/ERR1439389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439389/PHESPV0600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439389/PHESPV0600.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439389/ERR1439389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439389/ERR1439389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439389/PHESPV0600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439389/PHESPV0600.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134416212;139584562 ERS1194768 ERX1509767 GENOMIC 458911732 2016-06-10 PHESPV0600 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439389/PHESPV0600.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439389/PHESPV0600.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439389 PHESPV0600 ERR1439448 PHESPV0659 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439448 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439448 861981d26bb1eae573bad8fe40d1becc;3817bcd0d37f52ff37f2a571c6cfc595 1313 204458548 81cf32e319446704920e3fd5309668f7;c98813f475494464e5799d79ce918c79 SAMEA4023717 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439448/ERR1439448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439448/ERR1439448_2.fastq.gz 2557453 WGS PHESPV0659 RANDOM 138561025;143158259 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90ef4d83a77e228ab06c8e220eadd67e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439448/ERR1439448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439448/ERR1439448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439448/PHESPV0659.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439448/PHESPV0659.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439448/ERR1439448_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439448/ERR1439448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439448/PHESPV0659.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439448/PHESPV0659.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 146449362;151015562 ERS1194827 ERX1509826 GENOMIC 501509391 2016-06-10 PHESPV0659 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439448/PHESPV0659.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439448/PHESPV0659.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439448 PHESPV0659 ERR1439460 PHESPV0671 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439460 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439460 e51639194bb5099c8ef480ac80a215d7;1cae4237b2fc96055bef5fc9210010c5 1313 70491601 c3ae2978560c39faf77d31a9d9955fce;df1554c65e2177381b885d61b19cd432 SAMEA4023729 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439460/ERR1439460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439460/ERR1439460_2.fastq.gz 748371 WGS PHESPV0671 RANDOM 50769827;51097956 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d670c9e850da370779c525c1f7da9121 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439460/ERR1439460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439460/ERR1439460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439460/PHESPV0671.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439460/PHESPV0671.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439460/ERR1439460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439460/ERR1439460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439460/PHESPV0671.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439460/PHESPV0671.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48909075;49233981 ERS1194839 ERX1509838 GENOMIC 146635839 2016-06-10 PHESPV0671 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439460/PHESPV0671.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439460/PHESPV0671.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439460 PHESPV0671 ERR1439549 PHESPV0760 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439549 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439549 896f59cdaa58f855086bebe0fbb5e735;1009f5fc904b10814ba26381bbdb9d08 1313 104627021 0a83ad416fb90afb6275a1743f04733b;3e8f368f20494731ff625ff517bfa435 SAMEA4023818 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439549/ERR1439549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439549/ERR1439549_2.fastq.gz 1215204 WGS PHESPV0760 RANDOM 69865478;71705331 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9c39c9e396ce97429573883e563d69cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439549/ERR1439549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439549/ERR1439549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439549/PHESPV0760.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439549/PHESPV0760.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439549/ERR1439549_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439549/ERR1439549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439549/PHESPV0760.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439549/PHESPV0760.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73999526;75847767 ERS1194928 ERX1509927 GENOMIC 241168730 2016-06-10 PHESPV0760 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439549/PHESPV0760.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439549/PHESPV0760.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439549 PHESPV0760 ERR1439555 PHESPV0766 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439555 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439555 8e169621a9e6a2c919dc042daff0f8d5;4e5c6d7856f40eb2c75ad62b275b0ec9 1313 121594225 45df4a72a89b52d278bb0e6fe89098ca;651e30eaac0e2fac0ba272bf1d426341 SAMEA4023824 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439555/ERR1439555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439555/ERR1439555_2.fastq.gz 1318596 WGS PHESPV0766 RANDOM 87910960;87487199 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c853474ca5db1c0758113b071472338f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439555/ERR1439555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439555/ERR1439555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439555/PHESPV0766.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439555/PHESPV0766.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439555/ERR1439555_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439555/ERR1439555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439555/PHESPV0766.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439555/PHESPV0766.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84611608;84189435 ERS1194934 ERX1509933 GENOMIC 253309135 2016-06-10 PHESPV0766 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439555/PHESPV0766.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439555/PHESPV0766.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439555 PHESPV0766 ERR1439597 PHESPV0808 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439597 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439597 b4c029a89c247abacfc3865446140d22;b75ad075c803cac61b489cb74eb54811 1313 220873993 74fe3e4c675454001ac0104937010ba0;708966951e067344e775d479831055ad SAMEA4023866 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439597/ERR1439597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439597/ERR1439597_2.fastq.gz 2410966 WGS PHESPV0808 RANDOM 159047127;158223140 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline be2749c29164fdc468968d9b881a39ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439597/ERR1439597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439597/ERR1439597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439597/PHESPV0808.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439597/PHESPV0808.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439597/ERR1439597_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439597/ERR1439597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439597/PHESPV0808.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439597/PHESPV0808.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 152986568;152160603 ERS1194976 ERX1509975 GENOMIC 459692273 2016-06-10 PHESPV0808 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439597/PHESPV0808.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439597/PHESPV0808.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439597 PHESPV0808 ERR1439603 PHESPV0814 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439603 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439603 0d15d79dd4abd62348596273ffade36a;838ded7836e2f67d7c56028a47a6f7a4 1313 107243200 ea0f049bf9ee60c999c2f43a13446540;fb12a37aa480a675d83b66413721147f SAMEA4023872 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439603/ERR1439603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439603/ERR1439603_2.fastq.gz 1192036 WGS PHESPV0814 RANDOM 74631516;75044499 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0c74ed02a5ee8ca2be1183b44f30fb4b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439603/ERR1439603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439603/ERR1439603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439603/PHESPV0814.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439603/PHESPV0814.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439603/ERR1439603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439603/ERR1439603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439603/PHESPV0814.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439603/PHESPV0814.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 71624300;72062795 ERS1194982 ERX1509981 GENOMIC 215963594 2016-06-10 PHESPV0814 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439603/PHESPV0814.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439603/PHESPV0814.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439603 PHESPV0814 ERR1439642 PHESPV0853 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439642 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439642 5485cca2503f3e561be55c7ebb8a630a;05ec2d943b57bc2a13385e8f3561bcb2 1313 261262749 ea38d42f73571b873abecfe2ea1c1a78;01bde657cf704af9cefed7db365c9f9a SAMEA4023911 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439642/ERR1439642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439642/ERR1439642_2.fastq.gz 2758680 WGS PHESPV0853 RANDOM 185209715;189152177 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 524954d72e5c70a7e099f7c8091cd4b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439642/ERR1439642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439642/ERR1439642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439642/PHESPV0853.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439642/PHESPV0853.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439642/ERR1439642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439642/ERR1439642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439642/PHESPV0853.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439642/PHESPV0853.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 178150846;182071812 ERS1195021 ERX1510020 GENOMIC 536150883 2016-06-10 PHESPV0853 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439642/PHESPV0853.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439642/PHESPV0853.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439642 PHESPV0853 ERR1439607 PHESPV0818 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439607 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439607 abddf0d7d93dc8a15712cbb9212015e2;93d8c1eba0fec025d062f62cce6fa8ce 1313 93344222 a28050cf8f531dfd1fbec8e5f1968119;bb679dc241754f6f535a4f73212b0d35 SAMEA4023876 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439607/ERR1439607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439607/ERR1439607_2.fastq.gz 999290 WGS PHESPV0818 RANDOM 66980425;67691392 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ce8a1ad87d9b7a342719a6d2979b23f1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439607/ERR1439607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439607/ERR1439607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439607/PHESPV0818.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439607/PHESPV0818.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439607/ERR1439607_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439607/ERR1439607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439607/PHESPV0818.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439607/PHESPV0818.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64450217;65157191 ERS1194986 ERX1509985 GENOMIC 194024284 2016-06-10 PHESPV0818 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439607/PHESPV0818.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439607/PHESPV0818.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439607 PHESPV0818 ERR1439618 PHESPV0829 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439618 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439618 c8e8cd3da120c462f136330b57379c5f;6b9e8d36a952115ed2c9dae0182a4782 1313 104432385 7d39ed1a597c5a1aa8c0868690309acc;c58ca6e5f6589f5c3f4a120aade5c2c0 SAMEA4023887 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439618/ERR1439618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439618/ERR1439618_2.fastq.gz 1127212 WGS PHESPV0829 RANDOM 75492597;75241896 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 44b2704436082b0bb72bd686c7804b8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439618/ERR1439618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439618/ERR1439618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439618/PHESPV0829.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439618/PHESPV0829.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439618/ERR1439618_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439618/ERR1439618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439618/PHESPV0829.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439618/PHESPV0829.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72637030;72388222 ERS1194997 ERX1509996 GENOMIC 217446841 2016-06-10 PHESPV0829 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439618/PHESPV0829.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439618/PHESPV0829.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439618 PHESPV0829 ERR1439666 PHESPV0877 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439666 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439666 4dc312319738e5d3328e80f8d6038275;42d38b51d899e2e5e42dd0f8e2547c06 1313 157118188 298fd21a46899957e9661bdd0ace8c62;859b5b134042ef4c225425fc6e1a96be SAMEA4023935 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439666/ERR1439666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439666/ERR1439666_2.fastq.gz 1763820 WGS PHESPV0877 RANDOM 114270662;114794465 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0dde8d17ea8046e26059031a8edb9817 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439666/ERR1439666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439666/ERR1439666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439666/PHESPV0877.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439666/PHESPV0877.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439666/ERR1439666_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439666/ERR1439666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439666/PHESPV0877.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439666/PHESPV0877.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109655652;110202666 ERS1195045 ERX1510044 GENOMIC 344751081 2016-06-10 PHESPV0877 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439666/PHESPV0877.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439666/PHESPV0877.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439666 PHESPV0877 ERR1439718 PHESPV0929 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439718 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439718 bcde2d5304cd43891da7d34807d016f6;89724777e1cc650aa286215e17b941be 1313 152798575 af184f0e36bb9d96dc0170f2ec2eb6d0;43abe702bb08751a2efaea969caa4ce9 SAMEA4023987 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439718/ERR1439718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439718/ERR1439718_2.fastq.gz 1789689 WGS PHESPV0929 RANDOM 111557146;111200749 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d8fde20d37c39226b5691f29729b060f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439718/ERR1439718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439718/ERR1439718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439718/PHESPV0929.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439718/PHESPV0929.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439718/ERR1439718_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439718/ERR1439718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439718/PHESPV0929.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439718/PHESPV0929.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106809468;106485338 ERS1195097 ERX1510096 GENOMIC 333650187 2016-06-10 PHESPV0929 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439718/PHESPV0929.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439718/PHESPV0929.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439718 PHESPV0929 ERR1439748 PHESPV0959 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439748 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439748 d1427e6f89e7004a1f6e562c14319d0b;dc3058084b1bb06d9927702f42bf4dc7 1313 192635476 7ba89b308f96add350bc9de69ddae583;a1dd534a6dde036b76d742bd2b56754e SAMEA4024017 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439748/ERR1439748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439748/ERR1439748_2.fastq.gz 2166881 WGS PHESPV0959 RANDOM 137204630;141400259 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6c5af7fde433c9bfa9a0ca08e7e3a9c9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439748/ERR1439748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439748/ERR1439748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439748/PHESPV0959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439748/PHESPV0959.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439748/ERR1439748_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439748/ERR1439748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439748/PHESPV0959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439748/PHESPV0959.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131642343;135849396 ERS1195127 ERX1510126 GENOMIC 412515382 2016-06-10 PHESPV0959 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439748/PHESPV0959.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439748/PHESPV0959.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439748 PHESPV0959 ERR1439749 PHESPV0960 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439749 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439749 686b416d245d26e0ec9e78f43e5cce99;1dca54ba64e7d5adf805dcc894139231 1313 195635253 1d5714b41aca17ce9e26e4995ee90fa3;a130043590099444494351bb2fea4b69 SAMEA4024018 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439749/ERR1439749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439749/ERR1439749_2.fastq.gz 2198742 WGS PHESPV0960 RANDOM 139127353;143553100 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1d823361b8bf00da8a41962c8886d310 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439749/ERR1439749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439749/ERR1439749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439749/PHESPV0960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439749/PHESPV0960.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439749/ERR1439749_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439749/ERR1439749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439749/PHESPV0960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439749/PHESPV0960.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 133524780;137957994 ERS1195128 ERX1510127 GENOMIC 418337555 2016-06-10 PHESPV0960 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439749/PHESPV0960.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439749/PHESPV0960.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439749 PHESPV0960 ERR1439758 PHESPV0969 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439758 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439758 116724bc77cb8debb60570ea0b89374e;b0212633321307c38899609323dead86 1313 156853310 c0b8ff1787fd1244f137381df43e97bb;f04d8e82d6a79a7889af0ec0bc046d09 SAMEA4024027 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439758/ERR1439758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439758/ERR1439758_2.fastq.gz 1790684 WGS PHESPV0969 RANDOM 113773832;114325048 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cd3c945669a2308f14236290602c295b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439758/ERR1439758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439758/ERR1439758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439758/PHESPV0969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439758/PHESPV0969.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439758/ERR1439758_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439758/ERR1439758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439758/PHESPV0969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439758/PHESPV0969.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109040117;109617648 ERS1195137 ERX1510136 GENOMIC 339432118 2016-06-10 PHESPV0969 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439758/PHESPV0969.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439758/PHESPV0969.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439758 PHESPV0969 ERR1439774 PHESPV0985 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439774 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439774 947dfe023c8a3a3bd23a10e38a929953;740366cd2c3e1864cd9d754123fdad98 1313 134850607 25a443752dbfa64d423984c4e544accf;ec1756af87e35e7a166b60939bf93b37 SAMEA4024043 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439774/ERR1439774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439774/ERR1439774_2.fastq.gz 1484862 WGS PHESPV0985 RANDOM 97113602;98068288 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 09f449b8e2d48d16f1fd33016e62cad8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439774/ERR1439774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439774/ERR1439774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439774/PHESPV0985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439774/PHESPV0985.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439774/ERR1439774_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439774/ERR1439774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439774/PHESPV0985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439774/PHESPV0985.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93284684;94251122 ERS1195153 ERX1510152 GENOMIC 286440638 2016-06-10 PHESPV0985 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439774/PHESPV0985.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439774/PHESPV0985.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439774 PHESPV0985 ERR1439772 PHESPV0983 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439772 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439772 71a733690f39f1f67d915bad0505ab3a;e47230b8ff1f73cd8caec9273e96fcde 1313 166918880 6639f1df6167eab3ad0b626e73e539f9;e8e28e2160eb638302b85c7b62c38791 SAMEA4024041 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439772/ERR1439772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439772/ERR1439772_2.fastq.gz 1876402 WGS PHESPV0983 RANDOM 120667756;121024632 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline df7aa1d93c58a2136d2286c33cc573a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439772/ERR1439772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439772/ERR1439772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439772/PHESPV0983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439772/PHESPV0983.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439772/ERR1439772_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439772/ERR1439772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439772/PHESPV0983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439772/PHESPV0983.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115704238;116077401 ERS1195151 ERX1510150 GENOMIC 354069386 2016-06-10 PHESPV0983 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439772/PHESPV0983.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439772/PHESPV0983.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439772 PHESPV0983 ERR1439789 PHESPV1000 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439789 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439789 6c6109890c8a73b1314be11eb7ea421e;6781661f63980e7ad6a44a50c204854d 1313 165201145 e58fa464edb753f2eab2ff703abe23ae;9b1104e2130dc64dbaf4e8587919d012 SAMEA4024058 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439789/ERR1439789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439789/ERR1439789_2.fastq.gz 1809928 WGS PHESPV1000 RANDOM 119102848;120242999 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ffacd0bd3f90ce4430c5f58d9a85556d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439789/ERR1439789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439789/ERR1439789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439789/PHESPV1000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439789/PHESPV1000.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439789/ERR1439789_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439789/ERR1439789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439789/PHESPV1000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439789/PHESPV1000.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114332400;115479993 ERS1195168 ERX1510167 GENOMIC 352287664 2016-06-10 PHESPV1000 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439789/PHESPV1000.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439789/PHESPV1000.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439789 PHESPV1000 ERR1439797 PHESPV1008 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439797 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439797 d3e6173e1969b975cdf77e7124013abc;0c7aef94ec0f99aad567808ff914e698 1313 161192342 1132fb0af2bdc1b14c27ab7da5651ba9;911388e59ac7592aefe6e7fd62b7120b SAMEA4024066 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439797/ERR1439797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439797/ERR1439797_2.fastq.gz 1810093 WGS PHESPV1008 RANDOM 116871970;116830578 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a88f6339e3a08bfaed6a91a545e6b334 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439797/ERR1439797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439797/ERR1439797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439797/PHESPV1008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439797/PHESPV1008.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439797/ERR1439797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439797/ERR1439797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439797/PHESPV1008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439797/PHESPV1008.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112100213;112078084 ERS1195176 ERX1510175 GENOMIC 343938591 2016-06-10 PHESPV1008 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439797/PHESPV1008.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439797/PHESPV1008.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439797 PHESPV1008 ERR1439831 PHESPV1042 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439831 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439831 cd8075b8ae1293d5dbb2d13ce3840aff;ecd10bb6e3f97a114ca3f9ea850f9a4d 1313 140542628 1bebfb92a2050416c9b2e277989695b5;929e2f41986007d17a5399eb95986f07 SAMEA4024100 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439831/ERR1439831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439831/ERR1439831_2.fastq.gz 1554850 WGS PHESPV1042 RANDOM 99779187;103007222 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc4a92623be4f5848659505c0e023d77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439831/ERR1439831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439831/ERR1439831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439831/PHESPV1042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439831/PHESPV1042.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439831/ERR1439831_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439831/ERR1439831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439831/PHESPV1042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439831/PHESPV1042.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95762664;98987688 ERS1195210 ERX1510209 GENOMIC 294980989 2016-06-10 PHESPV1042 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439831/PHESPV1042.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439831/PHESPV1042.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439831 PHESPV1042 ERR1439861 PHESPV1072 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439861 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439861 2d0fd1a60da12f20b10dc3c37ef904f2;22893d1b4bc61c431a08a532b56d3bb3 1313 148311610 82c20a45af62bd70a29e88d7edbecd10;d4c1ecf6b5731fa3e7d84c30cebdbf3c SAMEA4024130 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439861/ERR1439861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439861/ERR1439861_2.fastq.gz 1608759 WGS PHESPV1072 RANDOM 106191876;108277298 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ff8ef79491d164560454ceff1230aa70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439861/ERR1439861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439861/ERR1439861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439861/PHESPV1072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439861/PHESPV1072.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439861/ERR1439861_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439861/ERR1439861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439861/PHESPV1072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439861/PHESPV1072.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101955470;104037138 ERS1195240 ERX1510239 GENOMIC 313953107 2016-06-10 PHESPV1072 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439861/PHESPV1072.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439861/PHESPV1072.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439861 PHESPV1072 ERR1439857 PHESPV1068 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439857 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439857 0a3454f06c4e6cd42a331da0a28ba4e2;16ed932b23671e40e5897bd65ab6f779 1313 180327509 c0106b36a3e78b8c2213fcd77acb5093;b205555414e0c4a23b553b8eb5addf2d SAMEA4024126 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439857/ERR1439857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439857/ERR1439857_2.fastq.gz 2044908 WGS PHESPV1068 RANDOM 131497176;131285492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 531fbbc7fa23b4c73dd236f423f0dd05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439857/ERR1439857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439857/ERR1439857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439857/PHESPV1068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439857/PHESPV1068.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439857/ERR1439857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439857/ERR1439857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439857/PHESPV1068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439857/PHESPV1068.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126180063;125995885 ERS1195236 ERX1510235 GENOMIC 397366057 2016-06-10 PHESPV1068 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439857/PHESPV1068.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439857/PHESPV1068.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439857 PHESPV1068 ERR1439887 PHESPV1098 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439887 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439887 9c5439590b02e9546971c4dd47d76e7e;bd368fd79e5a99b64e2058e4383a4cbb 1313 107204345 0a607522fc5834f095b7fcc4bfeef33e;f599221ac0b83c2fe164f871a507634a SAMEA4024156 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439887/ERR1439887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439887/ERR1439887_2.fastq.gz 1145566 WGS PHESPV1098 RANDOM 76564437;77325600 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 15513e1128c351ae2ccc84808a319b88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439887/ERR1439887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439887/ERR1439887_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439887/PHESPV1098.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439887/PHESPV1098.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439887/ERR1439887_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439887/ERR1439887_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439887/PHESPV1098.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439887/PHESPV1098.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73664222;74445090 ERS1195266 ERX1510265 GENOMIC 218470708 2016-06-10 PHESPV1098 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439887/PHESPV1098.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439887/PHESPV1098.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439887 PHESPV1098 ERR1440195 PHESPV1409 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440195 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440195 542996b94c2a34346306e362de6342be;774d1f90a404852fc73c1873a52292a4 1313 157353047 0a736e152944c127c5da45b1efefb100;a358c58f2af3b0e30bfbd1dce5c9992b SAMEA4024464 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440195/ERR1440195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440195/ERR1440195_2.fastq.gz 1686196 WGS PHESPV1409 RANDOM 111301889;114023661 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bff0388940748e4e17d0702cd95a6c6f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440195/ERR1440195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440195/ERR1440195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440195/PHESPV1409.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440195/PHESPV1409.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440195/ERR1440195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440195/ERR1440195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440195/PHESPV1409.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440195/PHESPV1409.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106816070;109556884 ERS1195574 ERX1510573 GENOMIC 316808540 2016-06-10 PHESPV1409 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440195/PHESPV1409.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440195/PHESPV1409.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440195 PHESPV1409 ERR1440205 PHESPV1419 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440205 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440205 212cdd9d4be4fa6b930d640c1c47371f;69ae145dd622e26b9e01da2624e4101b 1313 133085915 73802b11bd4ed86cd573fdc2ca47931f;78ee5bb93672d222cc41ecf998653527 SAMEA4024474 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440205/ERR1440205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440205/ERR1440205_2.fastq.gz 1436101 WGS PHESPV1419 RANDOM 95753684;95398989 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6031e60d07234a7c0fe47a89a0415319 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440205/ERR1440205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440205/ERR1440205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440205/PHESPV1419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440205/PHESPV1419.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440205/ERR1440205_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440205/ERR1440205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440205/PHESPV1419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440205/PHESPV1419.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92053712;91727559 ERS1195584 ERX1510583 GENOMIC 272998789 2016-06-10 PHESPV1419 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440205/PHESPV1419.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440205/PHESPV1419.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440205 PHESPV1419 ERR1440306 PHESPV1521 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440306 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440306 b992b32615864e3ebf875c105819748e;89d706077791ac60c5b52a2725ee95df 1313 117627337 10eb849f9e10632b8ac52ef02fb54af4;cc189e9a1bbd9be9d5e8416aa4d648d2 SAMEA4024575 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440306/ERR1440306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440306/ERR1440306_2.fastq.gz 1259156 WGS PHESPV1521 RANDOM 84176128;84494400 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a5e8c85a23daaedb6dcaefc2f91ae535 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440306/ERR1440306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440306/ERR1440306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440306/PHESPV1521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440306/PHESPV1521.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440306/ERR1440306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440306/ERR1440306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440306/PHESPV1521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440306/PHESPV1521.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80979257;81318132 ERS1195685 ERX1510684 GENOMIC 239167342 2016-06-10 PHESPV1521 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440306/PHESPV1521.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440306/PHESPV1521.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440306 PHESPV1521 ERR1440314 PHESPV1529 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440314 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440314 609963416ef8c061aad17752dbcd970b;0caf49c165128519c76e23d6befda756 1313 152784805 ebc10dcd8c99b88bccb42da75806a996;01a17ff59fb63669e064a0b7e6f00d25 SAMEA4024583 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440314/ERR1440314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440314/ERR1440314_2.fastq.gz 1782832 WGS PHESPV1529 RANDOM 110178458;115108188 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline afb9905bc265bef48ce583ef9c51431e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440314/ERR1440314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440314/ERR1440314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440314/PHESPV1529.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440314/PHESPV1529.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440314/ERR1440314_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440314/ERR1440314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440314/PHESPV1529.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440314/PHESPV1529.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105613236;110490966 ERS1195693 ERX1510692 GENOMIC 352462907 2016-06-10 PHESPV1529 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440314/PHESPV1529.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440314/PHESPV1529.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440314 PHESPV1529 ERR1440319 PHESPV1534 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440319 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440319 97980b9583339c3b21bf4d749f60bd0b;59e3d2944b8b7a9425452063254327f6 1313 162250501 146f86e9475f8dc8f5fe5db92b847afd;12065961f98dab62d9b15df5b276b789 SAMEA4024588 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440319/ERR1440319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440319/ERR1440319_2.fastq.gz 1726084 WGS PHESPV1534 RANDOM 113789709;118130175 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7dc94c9f88f9921ac7edd60d0f93e0d9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440319/ERR1440319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440319/ERR1440319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440319/PHESPV1534.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440319/PHESPV1534.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440319/ERR1440319_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440319/ERR1440319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440319/PHESPV1534.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440319/PHESPV1534.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109251554;113601235 ERS1195698 ERX1510697 GENOMIC 325043267 2016-06-10 PHESPV1534 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440319/PHESPV1534.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440319/PHESPV1534.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440319 PHESPV1534 ERR1440341 PHESPV1556 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440341 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440341 21fb30bc9c2ab4db6b31dfa078dbd362;daea5d090fda0b7fcb0765dc7323ace1 1313 227160624 6176fc28f1d47c4e63b9b3d93caadec3;1da79ac38b2ad03a31ab9f815653e2b2 SAMEA4024610 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440341/ERR1440341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440341/ERR1440341_2.fastq.gz 2679327 WGS PHESPV1556 RANDOM 164851216;169272708 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aaaaf024af38155f3f94e0a5b051269d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440341/ERR1440341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440341/ERR1440341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440341/PHESPV1556.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440341/PHESPV1556.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440341/ERR1440341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440341/ERR1440341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440341/PHESPV1556.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440341/PHESPV1556.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 158167434;162575624 ERS1195720 ERX1510719 GENOMIC 527767715 2016-06-10 PHESPV1556 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440341/PHESPV1556.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440341/PHESPV1556.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440341 PHESPV1556 ERR1440414 PHESPV1629 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440414 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440414 ed492da3c8f15555f36260053ccf500b;4c89a8dbcdec5fbec2af95c82834aeda 1313 148860416 06e832a14c0cc1d24ac89ed5973f0ed2;a13050aa1761d73ede2bd2ee9ea8e0ab SAMEA4024683 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440414/ERR1440414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440414/ERR1440414_2.fastq.gz 1660709 WGS PHESPV1629 RANDOM 107510674;109053627 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b85b7ea34a3deda2904789cd1e3465df ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440414/ERR1440414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440414/ERR1440414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440414/PHESPV1629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440414/PHESPV1629.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440414/ERR1440414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440414/ERR1440414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440414/PHESPV1629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440414/PHESPV1629.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103204686;104748146 ERS1195793 ERX1510792 GENOMIC 322379121 2016-06-10 PHESPV1629 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440414/PHESPV1629.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440414/PHESPV1629.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440414 PHESPV1629 ERR1440578 PHESPV1793 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440578 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440578 42a5fd3353d55dd799f41a5df0b7a801;929be993947bb18eabd8225d1d4a7f70 1313 197415635 5dd622d2d981b25c7cc5fbe82dd433e7;5584c6609247e1245429bc2d1dbe5a41 SAMEA4024847 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440578/ERR1440578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440578/ERR1440578_2.fastq.gz 2274414 WGS PHESPV1793 RANDOM 141264041;147975588 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a65d051a6eb1c5598ed071f7b3a16dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440578/ERR1440578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440578/ERR1440578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440578/PHESPV1793.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440578/PHESPV1793.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440578/ERR1440578_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440578/ERR1440578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440578/PHESPV1793.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440578/PHESPV1793.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 135602773;142239013 ERS1195957 ERX1510956 GENOMIC 449100319 2016-06-10 PHESPV1793 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440578/PHESPV1793.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440578/PHESPV1793.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440578 PHESPV1793 ERR1438838 PHESPV0048 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438838 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438838 73fee867511eb2d9f58156a15c6f5645;30e673262194ed971218760e47347bd6 1313 89148710 7c3125668ddf04b6507dcc4c31efda5c;1bdcab6eb97a5cc37a3d035933b01319 SAMEA4023107 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438838/ERR1438838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438838/ERR1438838_2.fastq.gz 1038570 WGS PHESPV0048 RANDOM 59382961;62214252 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 241fc4994b4e3c7a694b1a1c8159d652 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438838/ERR1438838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438838/ERR1438838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438838/PHESPV0048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438838/PHESPV0048.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438838/ERR1438838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438838/ERR1438838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438838/PHESPV0048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438838/PHESPV0048.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 62975322;65769741 ERS1194217 ERX1509216 GENOMIC 206337629 2016-06-10 PHESPV0048 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438838/PHESPV0048.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438838/PHESPV0048.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438838 PHESPV0048 ERR1438867 PHESPV0077 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438867 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438867 37c4af9e3c14151b4ad4b17c70355b18;d2d826bf22e3a2014572e893f96ea4c6 1313 96349805 47ad4386de7a8a874cd27a0ee71986e5;a57e1b8e1355c60ae00addfa0cc8af7d SAMEA4023136 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438867/ERR1438867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438867/ERR1438867_2.fastq.gz 1116085 WGS PHESPV0077 RANDOM 63311860;67891904 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d9bc43326634a7b36978407cc30b6e2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438867/ERR1438867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438867/ERR1438867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438867/PHESPV0077.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438867/PHESPV0077.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438867/ERR1438867_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438867/ERR1438867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438867/PHESPV0077.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438867/PHESPV0077.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67137919;71664700 ERS1194246 ERX1509245 GENOMIC 221618830 2016-06-10 PHESPV0077 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438867/PHESPV0077.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438867/PHESPV0077.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438867 PHESPV0077 ERR1438844 PHESPV0054 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438844 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438844 665e2744d03558267311e5e96404d01f;725b61bde1dea67aeb93f13ec1ded318 1313 128330418 d44363ffd0b5c8c7bbf63fd7dc7e13c1;d75181ef1f4016a8f3a5e70d2b5435d5 SAMEA4023113 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438844/ERR1438844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438844/ERR1438844_2.fastq.gz 1507124 WGS PHESPV0054 RANDOM 85169127;90066751 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7ceb16716d3073d75a613aac62975cdd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438844/ERR1438844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438844/ERR1438844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438844/PHESPV0054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438844/PHESPV0054.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438844/ERR1438844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438844/ERR1438844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438844/PHESPV0054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438844/PHESPV0054.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90133094;94996163 ERS1194223 ERX1509222 GENOMIC 299418202 2016-06-10 PHESPV0054 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438844/PHESPV0054.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438844/PHESPV0054.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438844 PHESPV0054 ERR1438907 PHESPV0117 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438907 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438907 53a41a64e4c4973656f4b8aaccea9536;9011e38addafd6dadde902c702831dce 1313 130186058 ac7e45ce6b7fe2fb3a3da338bd5c3ab1;c43c3cd56f574ae0bbce2495ee573602 SAMEA4023176 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438907/ERR1438907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438907/ERR1438907_2.fastq.gz 1431660 WGS PHESPV0117 RANDOM 85549132;90224242 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a3b86a2bff055bf02364938ef583ac79 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438907/ERR1438907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438907/ERR1438907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438907/PHESPV0117.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438907/PHESPV0117.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438907/ERR1438907_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438907/ERR1438907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438907/PHESPV0117.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438907/PHESPV0117.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90350273;94993627 ERS1194286 ERX1509285 GENOMIC 283642700 2016-06-10 PHESPV0117 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438907/PHESPV0117.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438907/PHESPV0117.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438907 PHESPV0117 ERR1438935 PHESPV0145 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438935 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438935 dd6dc9f02e26ad90a3fae3dd4e3a4035;a80f6b3ebd497fa3842bb3c5fe55811c 1313 162571839 ad5c008c2faeea4e65a1624aaf93989a;51337d3e58d843dc606f41d6b3efc8f1 SAMEA4023204 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438935/ERR1438935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438935/ERR1438935_2.fastq.gz 1801376 WGS PHESPV0145 RANDOM 108316799;111245987 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1b2390536ce86a5b90242849de0bda4e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438935/ERR1438935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438935/ERR1438935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438935/PHESPV0145.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438935/PHESPV0145.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438935/ERR1438935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438935/ERR1438935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438935/PHESPV0145.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438935/PHESPV0145.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114162038;117091250 ERS1194314 ERX1509313 GENOMIC 357143332 2016-06-10 PHESPV0145 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438935/PHESPV0145.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438935/PHESPV0145.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438935 PHESPV0145 ERR1438845 PHESPV0055 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438845 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438845 df563dd484dcf3f62f3f48c74eabff54;5d121eebac6b7ed83a5ffdce5460f27d 1313 177493259 608133070457bef16e27594b41956b8a;9f452a5fb68e0efd8f919b82e69d2ba0 SAMEA4023114 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438845/ERR1438845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438845/ERR1438845_2.fastq.gz 2096281 WGS PHESPV0055 RANDOM 118349992;123556131 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bf788ab9f729cc04b0595b8e47a17e7b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438845/ERR1438845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438845/ERR1438845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438845/PHESPV0055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438845/PHESPV0055.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438845/ERR1438845_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438845/ERR1438845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438845/PHESPV0055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438845/PHESPV0055.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124970259;130163616 ERS1194224 ERX1509223 GENOMIC 416784078 2016-06-10 PHESPV0055 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438845/PHESPV0055.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438845/PHESPV0055.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438845 PHESPV0055 ERR1438941 PHESPV0151 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438941 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438941 5dd18b92aff936700ef5b1d296b230c0;17ed28fe31370e88b5c4c7d16fce6313 1313 151143872 5b18ac8f5e2ee28105bd109a7afedc11;d27aad842e21ff78d88510146ca90573 SAMEA4023210 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438941/ERR1438941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438941/ERR1438941_2.fastq.gz 1684251 WGS PHESPV0151 RANDOM 100861856;103521560 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6e38990026cf3c5de14ae59d740685df ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438941/ERR1438941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438941/ERR1438941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438941/PHESPV0151.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438941/PHESPV0151.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438941/ERR1438941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438941/ERR1438941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438941/PHESPV0151.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438941/PHESPV0151.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106402632;109067939 ERS1194320 ERX1509319 GENOMIC 334268338 2016-06-10 PHESPV0151 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438941/PHESPV0151.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438941/PHESPV0151.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438941 PHESPV0151 ERR1439196 PHESPV0407 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439196 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439196 da7ecc8fc2401647826bb6d473ef334b;5b59ef917da391b0ff1e583dfe2b9e48 1313 217328262 71b59dee9803a9941d08af651b1dff91;68b384cd161bd9a4e1ba9c59a83e656d SAMEA4023465 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439196/ERR1439196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439196/ERR1439196_2.fastq.gz 2678471 WGS PHESPV0407 RANDOM 147128926;151203351 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8339e8cf53a310a5941c8e48f83d7e68 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439196/ERR1439196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439196/ERR1439196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439196/PHESPV0407.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439196/PHESPV0407.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439196/ERR1439196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439196/ERR1439196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439196/PHESPV0407.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439196/PHESPV0407.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 155407168;159452601 ERS1194575 ERX1509574 GENOMIC 523753628 2016-06-10 PHESPV0407 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439196/PHESPV0407.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439196/PHESPV0407.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439196 PHESPV0407 ERR1439244 PHESPV0455 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439244 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439244 9a868bf5dcb7cc61187329b0f19ff085;b7ad569d5667e355be7be8c249a4f616 1313 204027288 08095e3a5742082f6ba6b0858351d979;7a7442dcbf058bddc6a7df8c01080e60 SAMEA4023513 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439244/ERR1439244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439244/ERR1439244_2.fastq.gz 2439142 WGS PHESPV0455 RANDOM 136117984;141967453 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e4c6d86444b7eb70e19c923f4b3f5b03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439244/ERR1439244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439244/ERR1439244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439244/PHESPV0455.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439244/PHESPV0455.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439244/ERR1439244_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439244/ERR1439244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439244/PHESPV0455.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439244/PHESPV0455.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 143815832;149584384 ERS1194623 ERX1509622 GENOMIC 474393704 2016-06-10 PHESPV0455 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439244/PHESPV0455.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439244/PHESPV0455.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439244 PHESPV0455 ERR1439344 PHESPV0555 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439344 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439344 2b7b222b3dfdf3b763cea75b5bd23e7c;ab63ac4fdf2d8433784d1d534c584503 1313 144968138 bd1c0f6a40d5ca8a087b16f9e91defec;d333ef1e2ae0f2bb67a8a1681f48b7c0 SAMEA4023613 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439344/ERR1439344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439344/ERR1439344_2.fastq.gz 1616148 WGS PHESPV0555 RANDOM 104857274;105261961 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 42a51312b7903f8b136b14e29748e9b0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439344/ERR1439344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439344/ERR1439344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439344/PHESPV0555.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439344/PHESPV0555.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439344/ERR1439344_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439344/ERR1439344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439344/PHESPV0555.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439344/PHESPV0555.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100606337;101033481 ERS1194723 ERX1509722 GENOMIC 313680679 2016-06-10 PHESPV0555 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439344/PHESPV0555.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439344/PHESPV0555.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439344 PHESPV0555 ERR1439375 PHESPV0586 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439375 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439375 10c0bcdd16afdf79e24666eb4b03ac7a;a9745f92b7fae1ccadb09036b68b2551 1313 120398857 669a883cc91cf2a5351b98fd2ffe53c5;98855d6fe2d4484d1978ab9c88985517 SAMEA4023644 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439375/ERR1439375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439375/ERR1439375_2.fastq.gz 1326208 WGS PHESPV0586 RANDOM 87045142;87520569 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 40045add18f644d1e97c9cc5619e0e2a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439375/ERR1439375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439375/ERR1439375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439375/PHESPV0586.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439375/PHESPV0586.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439375/ERR1439375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439375/ERR1439375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439375/PHESPV0586.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439375/PHESPV0586.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83719921;84209043 ERS1194754 ERX1509753 GENOMIC 260954232 2016-06-10 PHESPV0586 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439375/PHESPV0586.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439375/PHESPV0586.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439375 PHESPV0586 ERR1439494 PHESPV0705 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439494 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439494 ced87a790fec66b435a3b80534ff85e9;d22fcb79f0ca62efec448b480ae0190b 1313 136162560 02dcf5b375527c265e96c5c3408f13bd;057e131a72b1c7a97e732f60a5b29631 SAMEA4023763 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439494/ERR1439494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439494/ERR1439494_2.fastq.gz 1654079 WGS PHESPV0705 RANDOM 91813113;95194159 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a2a1aa3a77456fac2e8b1c643fe108b0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439494/ERR1439494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439494/ERR1439494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439494/PHESPV0705.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439494/PHESPV0705.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439494/ERR1439494_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439494/ERR1439494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439494/PHESPV0705.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439494/PHESPV0705.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97316141;100773765 ERS1194873 ERX1509872 GENOMIC 323846683 2016-06-10 PHESPV0705 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439494/PHESPV0705.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439494/PHESPV0705.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439494 PHESPV0705 ERR1439509 PHESPV0720 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439509 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439509 bdebcaf38a10c6c63093a2b41eee27b0;667d5668a95afd8ffeb88b33fe1d2974 1313 148291217 1cf629c075252c0befbf12fd250d3841;1b96501239dd28e269273a7cb920b3f0 SAMEA4023778 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439509/ERR1439509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439509/ERR1439509_2.fastq.gz 1777161 WGS PHESPV0720 RANDOM 99557170;103209421 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3a554517a43235c6ef371ea63a98b7e7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439509/ERR1439509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439509/ERR1439509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439509/PHESPV0720.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439509/PHESPV0720.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439509/ERR1439509_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439509/ERR1439509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439509/PHESPV0720.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439509/PHESPV0720.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105362670;109086302 ERS1194888 ERX1509887 GENOMIC 347365960 2016-06-10 PHESPV0720 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439509/PHESPV0720.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439509/PHESPV0720.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439509 PHESPV0720 ERR1439532 PHESPV0743 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439532 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439532 9b933daf7d8f21115eca138171a12cdd;16815e10d1a11e793a37ee4988b7fb3f 1313 134551090 7a4aa7bd616c22390e4623646e742251;8ce88e39c647ff2b69a37e7162e516fe SAMEA4023801 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439532/ERR1439532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439532/ERR1439532_2.fastq.gz 1604638 WGS PHESPV0743 RANDOM 90854998;91879025 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9308b7ab687efb95a3e9131945f24a91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439532/ERR1439532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439532/ERR1439532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439532/PHESPV0743.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439532/PHESPV0743.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439532/ERR1439532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439532/ERR1439532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439532/PHESPV0743.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439532/PHESPV0743.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96172801;97201384 ERS1194911 ERX1509910 GENOMIC 312311730 2016-06-10 PHESPV0743 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439532/PHESPV0743.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439532/PHESPV0743.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439532 PHESPV0743 ERR1439963 PHESPV1174 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439963 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439963 ae48f6f5bbf943f95bdd458600302c0e;68810da4dfec6a5b5f6e6b42d9bc15e8 1313 158865049 3c141848ca40d6148b4f911028000bae;1b205320d35812303d820a88c87f7e84 SAMEA4024232 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439963/ERR1439963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439963/ERR1439963_2.fastq.gz 1818439 WGS PHESPV1174 RANDOM 105249094;109726446 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2c9dbbb022f4ca821207450b2974691f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439963/ERR1439963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439963/ERR1439963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439963/PHESPV1174.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439963/PHESPV1174.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439963/ERR1439963_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439963/ERR1439963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439963/PHESPV1174.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439963/PHESPV1174.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111127844;115531331 ERS1195342 ERX1510341 GENOMIC 360981267 2016-06-10 PHESPV1174 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439963/PHESPV1174.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439963/PHESPV1174.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439963 PHESPV1174 ERR1439946 PHESPV1157 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439946 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439946 fbfc7cf6b3f2f5e9f711f664ceb2837a;05105e82d3b54884f828ab799b020f0c 1313 105866032 aeefe8e81aa679d69790ea9884c21699;f0808b6d6dad96fd7ce595fea4e6572e SAMEA4024215 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439946/ERR1439946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439946/ERR1439946_2.fastq.gz 1187086 WGS PHESPV1157 RANDOM 70652689;72465595 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 46b7d9ef3de2ca3800ed158e38b16c20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439946/ERR1439946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439946/ERR1439946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439946/PHESPV1157.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439946/PHESPV1157.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439946/ERR1439946_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439946/ERR1439946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439946/PHESPV1157.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439946/PHESPV1157.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74722751;76525786 ERS1195325 ERX1510324 GENOMIC 235676258 2016-06-10 PHESPV1157 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439946/PHESPV1157.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439946/PHESPV1157.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439946 PHESPV1157 ERR1439965 PHESPV1176 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439965 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439965 8a3ca040c1f528b56327b16c796f3bc1;4189c9349553defd117bec115235721b 1313 132731210 b741c85cbec2fce603e34354253934eb;23bc60948c40865b83091d44e4313332 SAMEA4024234 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439965/ERR1439965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439965/ERR1439965_2.fastq.gz 1523976 WGS PHESPV1176 RANDOM 87921169;91281712 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6ce0ad3eb53d91635122d671fcef797e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439965/ERR1439965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439965/ERR1439965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439965/PHESPV1176.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439965/PHESPV1176.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439965/ERR1439965_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439965/ERR1439965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439965/PHESPV1176.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439965/PHESPV1176.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 92925174;96210815 ERS1195344 ERX1510343 GENOMIC 302499554 2016-06-10 PHESPV1176 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439965/PHESPV1176.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439965/PHESPV1176.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439965 PHESPV1176 ERR1440020 PHESPV1231 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440020 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440020 b61cdf16b8d3e888bb69a98ac220c806;a3f4bb8fefb5bff9c4ae2da848fe8eda 1313 101381660 6e5f5ecd3c51820af7a816fe32d7077f;b7ddec4aaf023fdd41eed276daf09ab0 SAMEA4024289 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440020/ERR1440020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440020/ERR1440020_2.fastq.gz 1175746 WGS PHESPV1231 RANDOM 68173309;68875684 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 62e92858e09dd17e5d52455c608ddd83 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440020/ERR1440020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440020/ERR1440020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440020/PHESPV1231.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440020/PHESPV1231.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440020/ERR1440020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440020/ERR1440020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440020/PHESPV1231.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440020/PHESPV1231.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72181883;72872998 ERS1195399 ERX1510398 GENOMIC 233326298 2016-06-10 PHESPV1231 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440020/PHESPV1231.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440020/PHESPV1231.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440020 PHESPV1231 ERR1440060 PHESPV1271 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440060 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440060 aa301f68997d3ca48e52fb6eb4fee2b1;8d921738fa3f30b64f01ee0360356e91 1313 125276390 bba2d33650bc768fef13c10aa0c22699;469c55d9acef512ef33776172298458e SAMEA4024329 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440060/ERR1440060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440060/ERR1440060_2.fastq.gz 1437305 WGS PHESPV1271 RANDOM 83303110;86286095 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 871e64f130d75ce7156eb38e2b5572f5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440060/ERR1440060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440060/ERR1440060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440060/PHESPV1271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440060/PHESPV1271.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440060/ERR1440060_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440060/ERR1440060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440060/PHESPV1271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440060/PHESPV1271.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88057486;91011323 ERS1195439 ERX1510438 GENOMIC 285398615 2016-06-10 PHESPV1271 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440060/PHESPV1271.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440060/PHESPV1271.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440060 PHESPV1271 ERR1440123 PHESPV1334 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440123 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440123 0ad4a9c8f2d17af6f3e0f95acb73efee;04a451a3c46409ac1fd4eeb9768f4167 1313 137612037 d1fc25961a54e7dbea8b408c4f1daa3f;49cc51101f855037a21e7062ba89a40b SAMEA4024392 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440123/ERR1440123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440123/ERR1440123_2.fastq.gz 1559593 WGS PHESPV1334 RANDOM 91376461;95148533 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4af1882a8ccdf1ee0824b006106e9171 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440123/ERR1440123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440123/ERR1440123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440123/PHESPV1334.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440123/PHESPV1334.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440123/ERR1440123_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440123/ERR1440123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440123/PHESPV1334.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440123/PHESPV1334.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96562381;100228631 ERS1195502 ERX1510501 GENOMIC 309657981 2016-06-10 PHESPV1334 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440123/PHESPV1334.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440123/PHESPV1334.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440123 PHESPV1334 ERR1440084 PHESPV1295 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440084 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440084 0d3d10b586c65688db4a0f5851621628;a90825f62374135ac26e9eb7ce1539a8 1313 136754244 e5fea59105b64d662bfb0667e7a9db33;8dff33ab175005fe79130d5a26bd57be SAMEA4024353 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440084/ERR1440084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440084/ERR1440084_2.fastq.gz 1558505 WGS PHESPV1295 RANDOM 89736486;93578147 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ef67e13d355ae3a1240e221f29f2e243 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440084/ERR1440084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440084/ERR1440084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440084/PHESPV1295.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440084/PHESPV1295.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440084/ERR1440084_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440084/ERR1440084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440084/PHESPV1295.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440084/PHESPV1295.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94818767;98612734 ERS1195463 ERX1510462 GENOMIC 308933155 2016-06-10 PHESPV1295 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440084/PHESPV1295.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440084/PHESPV1295.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440084 PHESPV1295 ERR1440157 PHESPV1370 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440157 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440157 02ec256805ac3706e4d3490cf69331b8;d01dcd4db9fc8e45e2e6dae2cb1e6dbc 1313 113481616 8b54d312054f1db8b944dbe225f2325d;3236d858efab65247009bb30c1e3d12a SAMEA4024426 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440157/ERR1440157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440157/ERR1440157_2.fastq.gz 1288511 WGS PHESPV1370 RANDOM 75538372;78241726 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ffddf9238eb4150e162d66fc1373572a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440157/ERR1440157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440157/ERR1440157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440157/PHESPV1370.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440157/PHESPV1370.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440157/ERR1440157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440157/ERR1440157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440157/PHESPV1370.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440157/PHESPV1370.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79923506;82535270 ERS1195536 ERX1510535 GENOMIC 255849338 2016-06-10 PHESPV1370 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440157/PHESPV1370.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440157/PHESPV1370.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440157 PHESPV1370 ERR1440204 PHESPV1418 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440204 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440204 e0385e76ade77bb8996216c44a7ff678;c2c286471dbeb5a2b37d698f0ca049ca 1313 135317010 c0a551a17a7f9e222ed75f727d0a9a95;40f557868a1cce42cf22db1666001a8e SAMEA4024473 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440204/ERR1440204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440204/ERR1440204_2.fastq.gz 1468431 WGS PHESPV1418 RANDOM 97271723;97128777 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b30e3bdea82aac3f8a235984011ee5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440204/ERR1440204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440204/ERR1440204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440204/PHESPV1418.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440204/PHESPV1418.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440204/ERR1440204_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440204/ERR1440204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440204/PHESPV1418.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440204/PHESPV1418.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93483749;93368066 ERS1195583 ERX1510582 GENOMIC 277221934 2016-06-10 PHESPV1418 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440204/PHESPV1418.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440204/PHESPV1418.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440204 PHESPV1418 ERR1438860 PHESPV0070 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438860 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438860 6949d63a2b4b6f95ec82e5b8a7052a9f;178c13b5ff7dd6f152f17d0957f57889 1313 119829355 8d19f26b75281a2a407c0a6209da04f9;ea776188a60eb028b86bccf58e85000a SAMEA4023129 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438860/ERR1438860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438860/ERR1438860_2.fastq.gz 1408402 WGS PHESPV0070 RANDOM 80169896;83729161 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline acd4dc46fd25d4d7ce9844eefbcf3e48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438860/ERR1438860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438860/ERR1438860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438860/PHESPV0070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438860/PHESPV0070.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438860/ERR1438860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438860/ERR1438860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438860/PHESPV0070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438860/PHESPV0070.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84896841;88389784 ERS1194239 ERX1509238 GENOMIC 279684171 2016-06-10 PHESPV0070 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438860/PHESPV0070.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438860/PHESPV0070.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438860 PHESPV0070 ERR1440589 PHESPV1804 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440589 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440589 5a706e6a10caa6f2a82a9d566bcf4731;960577af5f9cc7c95e082b5285f690c1 1313 146071197 470e74fe1183470259f6862f0cf0e8d0;550ec10ce3de114e798afd612590bfcf SAMEA4024858 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440589/ERR1440589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440589/ERR1440589_2.fastq.gz 1599998 WGS PHESPV1804 RANDOM 104841371;107553222 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9f92b2c2837bcce5474b47ac4768638b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440589/ERR1440589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440589/ERR1440589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440589/PHESPV1804.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440589/PHESPV1804.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440589/ERR1440589_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440589/ERR1440589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440589/PHESPV1804.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440589/PHESPV1804.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100738651;103435284 ERS1195968 ERX1510967 GENOMIC 315726170 2016-06-10 PHESPV1804 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440589/PHESPV1804.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440589/PHESPV1804.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440589 PHESPV1804 ERR1440221 PHESPV1435 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440221 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440221 32261e8a589959312df3bfa970166774;71399f44bb08912bf20719a8616672c3 1313 127737643 a87fe2eb5985e0f08d7e2643ff9abaad;df1bd1634dd7668ce32ae970921e619d SAMEA4024490 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440221/ERR1440221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440221/ERR1440221_2.fastq.gz 1512433 WGS PHESPV1435 RANDOM 84822363;89746181 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f911e48f36f983a5a14ab7c0c920e8e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440221/ERR1440221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440221/ERR1440221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440221/PHESPV1435.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440221/PHESPV1435.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440221/ERR1440221_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440221/ERR1440221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440221/PHESPV1435.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440221/PHESPV1435.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89798111;94629072 ERS1195600 ERX1510599 GENOMIC 300038312 2016-06-10 PHESPV1435 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440221/PHESPV1435.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440221/PHESPV1435.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440221 PHESPV1435 ERR1440232 PHESPV1446 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440232 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440232 08e8c0702ba1d75e290a5285f9bacc26;48b2fbdedd099c577fa594ce62fc91c1 1313 144314561 53694e115af8e8fb16e5efedb8c8b34d;ce887b224de2e5b4b19cbf1c6b0e150b SAMEA4024501 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440232/ERR1440232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440232/ERR1440232_2.fastq.gz 1568617 WGS PHESPV1446 RANDOM 96194099;98493873 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4d37a2559205d528faacb3378f745ebe ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440232/ERR1440232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440232/ERR1440232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440232/PHESPV1446.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440232/PHESPV1446.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440232/ERR1440232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440232/ERR1440232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440232/PHESPV1446.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440232/PHESPV1446.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101409614;103677979 ERS1195611 ERX1510610 GENOMIC 310156429 2016-06-10 PHESPV1446 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440232/PHESPV1446.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440232/PHESPV1446.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440232 PHESPV1446 ERR1439042 PHESPV0253 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439042 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439042 134cdbc2bd2af198a0e345dc9ceef719;57b4dc377020b777bdfe4793b954a7d0 1313 129056852 9ac7272bf673cb13c92431214643134a;49986b8802b5f89f91c65839dc86bc00 SAMEA4023311 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439042/ERR1439042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439042/ERR1439042_2.fastq.gz 1089692 WGS PHESPV0253 RANDOM 78433995;82389598 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 588782d2e6ec4ff3e6b51bab8cfef596 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439042/ERR1439042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439042/ERR1439042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439042/PHESPV0253.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439042/PHESPV0253.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439042/ERR1439042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439042/ERR1439042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439042/PHESPV0253.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439042/PHESPV0253.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82148246;86110945 ERS1194421 ERX1509420 GENOMIC 213570391 2016-06-10 PHESPV0253 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439042/PHESPV0253.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439042/PHESPV0253.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439042 PHESPV0253 ERR1440095 PHESPV1306 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440095 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440095 8038b06609a39c593967b337b53a8705;7620b1ca60b3ce481c50944584d5f971 1313 149509948 5e3b0c4484fee636c9cf3da37041d92c;c1e59d0330bd3e0c7f5b13cb2166c39e SAMEA4024364 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440095/ERR1440095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440095/ERR1440095_2.fastq.gz 1632008 WGS PHESPV1306 RANDOM 106460375;108070914 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bba211c3f98123480cb89f26ee1973e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440095/ERR1440095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440095/ERR1440095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440095/PHESPV1306.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440095/PHESPV1306.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440095/ERR1440095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440095/ERR1440095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440095/PHESPV1306.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440095/PHESPV1306.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102106944;103742444 ERS1195474 ERX1510473 GENOMIC 302384859 2016-06-10 PHESPV1306 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440095/PHESPV1306.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440095/PHESPV1306.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440095 PHESPV1306 ERR1440276 PHESPV1491 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440276 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440276 ab72bafdfeb3207717fcd26a0ad82437;11558ed9b2c084d007ab847139068c4d 1313 154382703 eeeb023987139aa54cdd55c8ac1b0d5c;bc8a0f3da3ca0e3e26f179801e63af41 SAMEA4024545 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440276/ERR1440276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440276/ERR1440276_2.fastq.gz 1847940 WGS PHESPV1491 RANDOM 104024727;107886786 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9c651cb57181cf85e74040be9226d0b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440276/ERR1440276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440276/ERR1440276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440276/PHESPV1491.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440276/PHESPV1491.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440276/ERR1440276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440276/ERR1440276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440276/PHESPV1491.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440276/PHESPV1491.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110015944;113865494 ERS1195655 ERX1510654 GENOMIC 367067111 2016-06-10 PHESPV1491 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440276/PHESPV1491.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440276/PHESPV1491.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440276 PHESPV1491 ERR1439287 PHESPV0498 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439287 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439287 e23e012ff2577aa17e37fd091e7ebfec;5212c205ee5610f12fcea1d1fc70ee3b 1313 141807394 a8a59f5545ec6e7d8b5e9c95a26488a5;55d3fbe179dc41556f0822205ab6a235 SAMEA4023556 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439287/ERR1439287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439287/ERR1439287_2.fastq.gz 1561020 WGS PHESPV0498 RANDOM 91964067;96419097 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 060a0af10763bbdc056b648c378eaee3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439287/ERR1439287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439287/ERR1439287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439287/PHESPV0498.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439287/PHESPV0498.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439287/ERR1439287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439287/ERR1439287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439287/PHESPV0498.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439287/PHESPV0498.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97049407;101414642 ERS1194666 ERX1509665 GENOMIC 307884876 2016-06-10 PHESPV0498 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439287/PHESPV0498.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439287/PHESPV0498.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439287 PHESPV0498 ERR1439329 PHESPV0540 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439329 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439329 8bb528303ac5097c5bbd66eb1e9cb14a;b143399ac277b20277c177c49ce5487b 1313 167109097 aec646127efe9f145bcdc80913cf4356;93fce7ec0af716604d50ed921d8ea6b5 SAMEA4023598 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439329/ERR1439329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439329/ERR1439329_2.fastq.gz 1859355 WGS PHESPV0540 RANDOM 109326907;112313218 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline eb53235bcb8669db1afea1f6eaad9135 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439329/ERR1439329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439329/ERR1439329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439329/PHESPV0540.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439329/PHESPV0540.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439329/ERR1439329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439329/ERR1439329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439329/PHESPV0540.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439329/PHESPV0540.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115255632;118202615 ERS1194708 ERX1509707 GENOMIC 367626133 2016-06-10 PHESPV0540 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439329/PHESPV0540.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439329/PHESPV0540.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439329 PHESPV0540 ERR1439292 PHESPV0503 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439292 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439292 ff0b7379f06322ae4ac0e8dba8f8f413;e65de9abd62b23ba1cf59b48b3582dbb 1313 102228852 832c606a509e3d7d0edf958775f2c92c;0327fad0a9ee0071816fc01e7545443e SAMEA4023561 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439292/ERR1439292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439292/ERR1439292_2.fastq.gz 1137412 WGS PHESPV0503 RANDOM 66840816;68646176 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5adef8f52cfc03546e7ef61e40812eb6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439292/ERR1439292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439292/ERR1439292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439292/PHESPV0503.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439292/PHESPV0503.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439292/ERR1439292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439292/ERR1439292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439292/PHESPV0503.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439292/PHESPV0503.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70684643;72440172 ERS1194671 ERX1509670 GENOMIC 224590762 2016-06-10 PHESPV0503 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439292/PHESPV0503.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439292/PHESPV0503.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439292 PHESPV0503 ERR1439764 PHESPV0975 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439764 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439764 50ebcc89d5c21a16722a2a20a0ad8333;64065f2589e45f722f1e5dda302dceb4 1313 115682268 7968b0fb27d88720daa5b8b06218a82c;c321ba1a23664f50f82b68c49d283042 SAMEA4024033 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439764/ERR1439764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439764/ERR1439764_2.fastq.gz 1282366 WGS PHESPV0975 RANDOM 75002259;76513019 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ad97dd31a34e00900bdffb4f0b66fe75 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439764/ERR1439764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439764/ERR1439764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439764/PHESPV0975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439764/PHESPV0975.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439764/ERR1439764_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439764/ERR1439764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439764/PHESPV0975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439764/PHESPV0975.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79207325;80648512 ERS1195143 ERX1510142 GENOMIC 252467233 2016-06-10 PHESPV0975 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439764/PHESPV0975.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439764/PHESPV0975.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439764 PHESPV0975 ERR1439782 PHESPV0993 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439782 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439782 b3901247fd8b2946f3ba4f362e0f92df;e1da5c8d5c2b704c08788e6b520fce24 1313 198560028 15d8482c8c40cc6cb7d28f7ba8ac219d;df11c734bec491d2a9a78a5e9fef7a7a SAMEA4024051 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439782/ERR1439782_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439782/ERR1439782_2.fastq.gz 2213102 WGS PHESPV0993 RANDOM 130977839;135449250 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e75613f5bac04f6a2a76bd2a8e18c36a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439782/ERR1439782_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439782/ERR1439782_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439782/PHESPV0993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439782/PHESPV0993.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439782/ERR1439782_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439782/ERR1439782_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439782/PHESPV0993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439782/PHESPV0993.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137871847;142286143 ERS1195161 ERX1510160 GENOMIC 437506428 2016-06-10 PHESPV0993 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439782/PHESPV0993.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439782/PHESPV0993.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439782 PHESPV0993 ERR1439805 PHESPV1016 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439805 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439805 5f05aa30222cd47370810411dc28f505;93634e58e8a2476fba48712d9b5714b3 1313 230835846 a6206d7f65735ab1419c3517041a5ff5;512cdf29f45e1df966138dcc9dafb422 SAMEA4024074 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439805/ERR1439805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439805/ERR1439805_2.fastq.gz 2579199 WGS PHESPV1016 RANDOM 152901595;157599581 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 757290e61e803a7931bc6804c2cf9994 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439805/ERR1439805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439805/ERR1439805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439805/PHESPV1016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439805/PHESPV1016.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439805/ERR1439805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439805/ERR1439805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439805/PHESPV1016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439805/PHESPV1016.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 160794435;165441940 ERS1195184 ERX1510183 GENOMIC 510428112 2016-06-10 PHESPV1016 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439805/PHESPV1016.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439805/PHESPV1016.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439805 PHESPV1016 ERR1439841 PHESPV1052 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439841 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439841 c86612be415d844955ba6c57943f7aa7;468474ce698173ad799bf8a7e2661195 1313 120134739 08873c9251da97f463091d05a806ad20;74fc663376c233e41a98634ded17f674 SAMEA4024110 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439841/ERR1439841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439841/ERR1439841_2.fastq.gz 1308412 WGS PHESPV1052 RANDOM 80112582;82078299 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 14de1979d213f2f9902ffa449201d84a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439841/ERR1439841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439841/ERR1439841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439841/PHESPV1052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439841/PHESPV1052.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439841/ERR1439841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439841/ERR1439841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439841/PHESPV1052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439841/PHESPV1052.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84532620;86462796 ERS1195220 ERX1510219 GENOMIC 258671493 2016-06-10 PHESPV1052 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439841/PHESPV1052.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439841/PHESPV1052.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439841 PHESPV1052 ERR1440621 PHESPV1836 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440621 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440621 547e6f0e8604ac7138202ff04a3117b7;ec392fc867d16bf7cd6727f63a583ff7 1313 107004744 9323a3d9e0b4dc85c20b84719eac098c;c3d96fe725871ed5197ed61a9c99998c SAMEA4024890 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440621/ERR1440621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440621/ERR1440621_2.fastq.gz 1225511 WGS PHESPV1836 RANDOM 76693829;79325751 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b8537d387a49eda83656512a8d41839d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440621/ERR1440621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440621/ERR1440621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440621/PHESPV1836.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440621/PHESPV1836.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440621/ERR1440621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440621/ERR1440621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440621/PHESPV1836.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440621/PHESPV1836.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73612849;76202853 ERS1196000 ERX1510999 GENOMIC 238779096 2016-06-10 PHESPV1836 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440621/PHESPV1836.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440621/PHESPV1836.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440621 PHESPV1836 ERR1440379 PHESPV1594 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440379 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440379 4d304035657527d55e60360543265a17;6d269289945f3cf77fcde69f8151aad5 1313 182465637 3f805c0481f0854d07d501344674369d;aa73f0f9aa125d0d36f5d9c500804fa1 SAMEA4024648 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440379/ERR1440379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440379/ERR1440379_2.fastq.gz 2122115 WGS PHESPV1594 RANDOM 130782136;136923681 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a3b07a929f743adf6e4d15dba9975d84 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440379/ERR1440379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440379/ERR1440379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440379/PHESPV1594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440379/PHESPV1594.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440379/ERR1440379_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440379/ERR1440379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440379/PHESPV1594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440379/PHESPV1594.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125389098;131481042 ERS1195758 ERX1510757 GENOMIC 417520817 2016-06-10 PHESPV1594 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440379/PHESPV1594.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440379/PHESPV1594.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440379 PHESPV1594 ERR1440601 PHESPV1816 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440601 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440601 98058869dc08fc0e9d68a8f6405b1adb;dfd607460ec91fbc7cf7da57c7ef502b 1313 127803494 29c18c9234aa485a1a7fb2bc6c0727cc;de024245a81be2b1b7f0f3e09b23396d SAMEA4024870 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440601/ERR1440601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440601/ERR1440601_2.fastq.gz 1452650 WGS PHESPV1816 RANDOM 91350439;94858105 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e15f168fde24bc14ac20a56f62d23172 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440601/ERR1440601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440601/ERR1440601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440601/PHESPV1816.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440601/PHESPV1816.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440601/ERR1440601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440601/ERR1440601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440601/PHESPV1816.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440601/PHESPV1816.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87657340;91115091 ERS1195980 ERX1510979 GENOMIC 284574162 2016-06-10 PHESPV1816 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440601/PHESPV1816.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440601/PHESPV1816.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440601 PHESPV1816 ERR1440728 PHESPV1943 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440728 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440728 c0b5faf1606bc35aa3c206e6fa044410;97b2b83db4a6fed8e9c3c26d9bb8616e 1313 178338094 4df8a5bcf5072ed5bab186a4f41fe0a0;cb3d0fffcea13c5a5eb41e2902318cf4 SAMEA4024997 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440728/ERR1440728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440728/ERR1440728_2.fastq.gz 2007562 WGS PHESPV1943 RANDOM 129126789;130552993 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6e91fbbd0747c7f7e4c62df8f16c142 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440728/ERR1440728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440728/ERR1440728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440728/PHESPV1943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440728/PHESPV1943.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440728/ERR1440728_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440728/ERR1440728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440728/PHESPV1943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440728/PHESPV1943.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123922421;125350071 ERS1196107 ERX1511106 GENOMIC 393337205 2016-06-10 PHESPV1943 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440728/PHESPV1943.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440728/PHESPV1943.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440728 PHESPV1943 ERR1440730 PHESPV1945 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440730 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440730 042bcaaf64f957022d551e2afd2a67fd;e85062fe226cc9fd893502796ca9df84 1313 186846261 00f67d1c029392b72404121156455b12;b47511b00fd5c43b46cd658c113adfa3 SAMEA4024999 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440730/ERR1440730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440730/ERR1440730_2.fastq.gz 2149894 WGS PHESPV1945 RANDOM 135782748;136507729 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3db335d1d82a2c3162a447ac5bd07f06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440730/ERR1440730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440730/ERR1440730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440730/PHESPV1945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440730/PHESPV1945.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440730/ERR1440730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440730/ERR1440730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440730/PHESPV1945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440730/PHESPV1945.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130216240;130942450 ERS1196109 ERX1511108 GENOMIC 415159867 2016-06-10 PHESPV1945 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440730/PHESPV1945.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440730/PHESPV1945.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440730 PHESPV1945 ERR1440793 PHESPV2008 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440793 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440793 bd4225beeee99319dda42c42cd50cf50;4103e443f48b4e66921abd8ad94c7f01 1313 165959803 7d7fe5f2d97cfa67864ed0e9553ebe8f;5570867ee046fad5b5bca3dcd8618670 SAMEA4025062 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440793/ERR1440793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440793/ERR1440793_2.fastq.gz 1816453 WGS PHESPV2008 RANDOM 119649691;120582793 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c34613e7499381afc7423959bdac5b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440793/ERR1440793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440793/ERR1440793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440793/PHESPV2008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440793/PHESPV2008.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440793/ERR1440793_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440793/ERR1440793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440793/PHESPV2008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440793/PHESPV2008.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114887799;115833518 ERS1196172 ERX1511171 GENOMIC 352907725 2016-06-10 PHESPV2008 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440793/PHESPV2008.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440793/PHESPV2008.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440793 PHESPV2008 ERR1440795 PHESPV2010 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440795 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440795 afa824ca50605394bf88d6ea2e473ce0;3d54d577624146ab4e8d558a2a47ab95 1313 136361984 1297aeb65052bc92118ea2b5ed4267bd;0a24b2f561bd5d16d0fabadb2790c3ab SAMEA4025064 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440795/ERR1440795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440795/ERR1440795_2.fastq.gz 1520974 WGS PHESPV2010 RANDOM 98600907;99293802 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9143f08af74a7c842b360e7eca879325 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440795/ERR1440795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440795/ERR1440795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440795/PHESPV2010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440795/PHESPV2010.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440795/ERR1440795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440795/ERR1440795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440795/PHESPV2010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440795/PHESPV2010.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94669032;95376284 ERS1196174 ERX1511173 GENOMIC 293283320 2016-06-10 PHESPV2010 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440795/PHESPV2010.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440795/PHESPV2010.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440795 PHESPV2010 ERR1440797 PHESPV2012 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440797 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440797 16f0cd757d2b9b67c5f4ca0f4b6024fe;665576b9a76c2956ce1bebf548947538 1313 149750702 c2e262875ad06de03ade2f26e8ca5469;801869ffb7c4d077dc52fdc6e627befd SAMEA4025066 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440797/ERR1440797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440797/ERR1440797_2.fastq.gz 1615080 WGS PHESPV2012 RANDOM 106614707;109401788 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f28ea88f4a259a91edd85d286db4778c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440797/ERR1440797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440797/ERR1440797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440797/PHESPV2012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440797/PHESPV2012.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440797/ERR1440797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440797/ERR1440797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440797/PHESPV2012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440797/PHESPV2012.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102402634;105182831 ERS1196176 ERX1511175 GENOMIC 313304634 2016-06-10 PHESPV2012 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440797/PHESPV2012.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440797/PHESPV2012.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440797 PHESPV2012 ERR1440799 PHESPV2014 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440799 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440799 fe536a2a411f33643d7c3696aac6093f;20849c06a37a529849992bc873a88861 1313 510439758 693f708be0bc5a18a3d8bd054f726ff4;e8421a2324112da21af450f00c6e2bd6 SAMEA4025068 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440799/ERR1440799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440799/ERR1440799_2.fastq.gz 5829377 WGS PHESPV2014 RANDOM 369838176;375550779 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6eb766d6bf776aceb8b59e8236eca4f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440799/ERR1440799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440799/ERR1440799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440799/PHESPV2014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440799/PHESPV2014.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440799/ERR1440799_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440799/ERR1440799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440799/PHESPV2014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440799/PHESPV2014.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 353299565;359063584 ERS1196178 ERX1511177 GENOMIC 1145954145 2016-06-10 PHESPV2014 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440799/PHESPV2014.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440799/PHESPV2014.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440799 PHESPV2014 ERR1440808 PHESPV2023 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440808 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440808 b235adac745ff6ef1e5509f279982a84;fce38a0a69fe23645614679c03e11a65 1313 152320122 d94b2ec5fc52b0f94b1392b8cce2ed29;2d7018cc2744474f1bee29bce41ab3a0 SAMEA4025077 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440808/ERR1440808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440808/ERR1440808_2.fastq.gz 1639465 WGS PHESPV2023 RANDOM 108032451;111508111 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 364a0f1efc830e112aa685699391918b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440808/ERR1440808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440808/ERR1440808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440808/PHESPV2023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440808/PHESPV2023.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440808/ERR1440808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440808/ERR1440808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440808/PHESPV2023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440808/PHESPV2023.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103722197;107184397 ERS1196187 ERX1511186 GENOMIC 318393436 2016-06-10 PHESPV2023 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440808/PHESPV2023.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440808/PHESPV2023.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440808 PHESPV2023 ERR1440810 PHESPV2025 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440810 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440810 1cd09d4c7ece1dcf6a88c8b9a0a4ff57;5eb5f175a0752e7a9174dd45a91f5b69 1313 138348650 49e2d80c5a68aaf27030791ef2e440de;2f5a7762c4f12de2256f57758666994b SAMEA4025079 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440810/ERR1440810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440810/ERR1440810_2.fastq.gz 1523223 WGS PHESPV2025 RANDOM 99852264;100569449 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1f5fc2b5789cd17b643829992ec1df3a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440810/ERR1440810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440810/ERR1440810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440810/PHESPV2025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440810/PHESPV2025.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440810/ERR1440810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440810/ERR1440810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440810/PHESPV2025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440810/PHESPV2025.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95922460;96648904 ERS1196189 ERX1511188 GENOMIC 296018715 2016-06-10 PHESPV2025 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440810/PHESPV2025.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440810/PHESPV2025.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440810 PHESPV2025 ERR1440818 PHESPV2033 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440818 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440818 f58d2e3e0c6ee15726f0f92ff5df6e30;599c94aedecc2d1d4c89886267876fca 1313 169692160 d0e883f555dfc465498e1406bf639e22;15d06b5006e03303ceb4192fd766d56b SAMEA4025087 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440818/ERR1440818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440818/ERR1440818_2.fastq.gz 1862667 WGS PHESPV2033 RANDOM 122050431;123733179 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c056fcaf8463801d19c44223e8080291 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440818/ERR1440818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440818/ERR1440818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440818/PHESPV2033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440818/PHESPV2033.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440818/ERR1440818_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440818/ERR1440818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440818/PHESPV2033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440818/PHESPV2033.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117163773;118851409 ERS1196197 ERX1511196 GENOMIC 363201949 2016-06-10 PHESPV2033 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440818/PHESPV2033.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440818/PHESPV2033.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440818 PHESPV2033 ERR1440829 PHESPV2044 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440829 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440829 04662d83742338c885ad5af6e475cdc6;731193bb6321087042192f44eec6d332 1313 174299747 7d2183da825133404033385c97cd0da4;71a36863f280b7d915eff959df090edb SAMEA4025098 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440829/ERR1440829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440829/ERR1440829_2.fastq.gz 1909640 WGS PHESPV2044 RANDOM 124975059;127146051 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 284f85f68e1391de350002141f692ea7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440829/ERR1440829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440829/ERR1440829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440829/PHESPV2044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440829/PHESPV2044.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440829/ERR1440829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440829/ERR1440829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440829/PHESPV2044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440829/PHESPV2044.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119986623;122159326 ERS1196208 ERX1511207 GENOMIC 371179405 2016-06-10 PHESPV2044 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440829/PHESPV2044.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440829/PHESPV2044.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440829 PHESPV2044 ERR1440843 PHESPV2058 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440843 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440843 346152af10adcf6d6a69ba370716540f;95122e90e01a8f371bd02ae981220d68 1313 149660295 287dab966ef5664d1ca70a38929b3986;3694e2c4c8184ad56ad2303fb8e7bb11 SAMEA4025112 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440843/ERR1440843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440843/ERR1440843_2.fastq.gz 1622203 WGS PHESPV2058 RANDOM 107627927;109016517 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b9aeab445fd44443d95fd5ce79f58cf8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440843/ERR1440843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440843/ERR1440843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440843/PHESPV2058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440843/PHESPV2058.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440843/ERR1440843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440843/ERR1440843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440843/PHESPV2058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440843/PHESPV2058.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103416021;104806871 ERS1196222 ERX1511221 GENOMIC 318140663 2016-06-10 PHESPV2058 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440843/PHESPV2058.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440843/PHESPV2058.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440843 PHESPV2058 ERR1438869 PHESPV0079 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438869 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438869 74cc3d7bb7934f608cfd26f0fd5d7ab8;9c04f0d18850bfecb01c3eb7bad3feb1 1313 92476421 0659b0b3eef0a68f8ec1ba34eb3b9a9a;52e03774c212e6b8a0804aa66d46d48c SAMEA4023138 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438869/ERR1438869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438869/ERR1438869_2.fastq.gz 1056895 WGS PHESPV0079 RANDOM 60137719;65431791 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f41ff2a080155a2760cdce3d5355539e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438869/ERR1438869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438869/ERR1438869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438869/PHESPV0079.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438869/PHESPV0079.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438869/ERR1438869_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438869/ERR1438869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438869/PHESPV0079.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438869/PHESPV0079.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63807995;69047137 ERS1194248 ERX1509247 GENOMIC 209751784 2016-06-10 PHESPV0079 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438869/PHESPV0079.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438869/PHESPV0079.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438869 PHESPV0079 ERR1438882 PHESPV0092 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438882 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438882 03058aef64132019e8c9694492e8eb16;961af6dd6cd9b76f5ee54dafd49d589f 1313 147586584 8908623bb8f6f0c3c47f93f2a922741d;18c167f5393405cc44395284ceaa50fe SAMEA4023151 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438882/ERR1438882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438882/ERR1438882_2.fastq.gz 1776228 WGS PHESPV0092 RANDOM 99118491;102414643 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 85dadebde5dceec6393c5e6d64b44631 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438882/ERR1438882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438882/ERR1438882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438882/PHESPV0092.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438882/PHESPV0092.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438882/ERR1438882_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438882/ERR1438882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438882/PHESPV0092.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438882/PHESPV0092.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104839588;108137755 ERS1194261 ERX1509260 GENOMIC 353237277 2016-06-10 PHESPV0092 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438882/PHESPV0092.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438882/PHESPV0092.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438882 PHESPV0092 ERR1440850 PHESPV2065 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440850 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440850 ce96772a2996e2a4f863a3af50af7c45;77ca5ce1778fc2998e2fd97fd0fa9853 1313 164218320 46424197fca07196bdbc5975ee35c666;b4dc44701301198dc0eaa51a20a9c5c3 SAMEA4025119 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440850/ERR1440850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440850/ERR1440850_2.fastq.gz 1790421 WGS PHESPV2065 RANDOM 119138482;118025046 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dc754216902d2452653359ea86a1e6c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440850/ERR1440850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440850/ERR1440850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440850/PHESPV2065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440850/PHESPV2065.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440850/ERR1440850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440850/ERR1440850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440850/PHESPV2065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440850/PHESPV2065.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114430636;113347026 ERS1196229 ERX1511228 GENOMIC 344641437 2016-06-10 PHESPV2065 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440850/PHESPV2065.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440850/PHESPV2065.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440850 PHESPV2065 ERR1438839 PHESPV0049 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438839 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438839 089057fa0f5f3250ac74ca84c559fb32;3cd1beedf43d672296d761a25c63ef7f 1313 185863673 ef8f4afe1b342a96a6ea0eda119cab40;3e4a19b43ccae654ce4b19dc76ab3dcb SAMEA4023108 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438839/ERR1438839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438839/ERR1438839_2.fastq.gz 2179095 WGS PHESPV0049 RANDOM 124149897;129715616 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ed0b2a1fc0acbca928123f2ee382419b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438839/ERR1438839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438839/ERR1438839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438839/PHESPV0049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438839/PHESPV0049.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438839/ERR1438839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438839/ERR1438839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438839/PHESPV0049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438839/PHESPV0049.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130997254;136533140 ERS1194218 ERX1509217 GENOMIC 433329239 2016-06-10 PHESPV0049 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438839/PHESPV0049.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438839/PHESPV0049.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438839 PHESPV0049 ERR1438815 PHESPV0025 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438815 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438815 7efd886727933916848f3806893fa407;00328684f1a8ba4467abc0459a445a28 1313 102892765 e7a96b363d244b431b1da1ef84df721b;38b36434d1bbaba698798b53727aa1bd SAMEA4023084 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438815/ERR1438815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438815/ERR1438815_2.fastq.gz 1207151 WGS PHESPV0025 RANDOM 68993267;69114601 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 45f51984e9095350d77dbc69ba6800ab ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438815/ERR1438815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438815/ERR1438815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438815/PHESPV0025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438815/PHESPV0025.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438815/ERR1438815_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438815/ERR1438815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438815/PHESPV0025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438815/PHESPV0025.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73085492;73229482 ERS1194194 ERX1509193 GENOMIC 239689169 2016-06-10 PHESPV0025 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438815/PHESPV0025.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438815/PHESPV0025.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438815 PHESPV0025 ERR1438898 PHESPV0108 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438898 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438898 0e75ba8f063d87bce1c153b63578bf5e;0d6c37737f47d5ca42d53c5340bec2e8 1313 150997567 b5df0bbdeb206e60157512bb9082d07b;8befffb3c051143dcfb9d5838a91d950 SAMEA4023167 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438898/ERR1438898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438898/ERR1438898_2.fastq.gz 1675958 WGS PHESPV0108 RANDOM 101036000;103206747 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54e28a02afcba1d89f1c0ebf8b4790d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438898/ERR1438898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438898/ERR1438898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438898/PHESPV0108.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438898/PHESPV0108.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438898/ERR1438898_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438898/ERR1438898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438898/PHESPV0108.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438898/PHESPV0108.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106554275;108729908 ERS1194277 ERX1509276 GENOMIC 332539267 2016-06-10 PHESPV0108 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438898/PHESPV0108.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438898/PHESPV0108.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438898 PHESPV0108 ERR1438887 PHESPV0097 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438887 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438887 b7b9ec24fd082da753eeadea51f74817;523d8941d46cfd9994a2f837fb63b783 1313 99305601 eeb77a0b7107743ee70b14acad9e6688;17b63f1fe20f995beca67d53cce58511 SAMEA4023156 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438887/ERR1438887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438887/ERR1438887_2.fastq.gz 1166481 WGS PHESPV0097 RANDOM 66440573;69262856 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 88f42e4399c48361b06eca1cb0ffaf82 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438887/ERR1438887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438887/ERR1438887_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438887/PHESPV0097.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438887/PHESPV0097.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438887/ERR1438887_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438887/ERR1438887_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438887/PHESPV0097.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438887/PHESPV0097.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70436156;73234303 ERS1194266 ERX1509265 GENOMIC 231991679 2016-06-10 PHESPV0097 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438887/PHESPV0097.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438887/PHESPV0097.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438887 PHESPV0097 ERR1438927 PHESPV0137 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438927 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438927 d5953f6a0bc3c4bc03b1aeeab28c979f;5114b07b1308b5bcd1c7df913c94f315 1313 181516391 9e66612b9d97c4b1fe5618ad8f8bb0c0;a710fa308f06fdbecc2d1866ad7e7c6d SAMEA4023196 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438927/ERR1438927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438927/ERR1438927_2.fastq.gz 2015702 WGS PHESPV0137 RANDOM 119489339;125640606 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e3693cec1dd4b9e7afea6d332dbec408 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438927/ERR1438927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438927/ERR1438927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438927/PHESPV0137.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438927/PHESPV0137.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438927/ERR1438927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438927/ERR1438927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438927/PHESPV0137.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438927/PHESPV0137.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125910333;132040572 ERS1194306 ERX1509305 GENOMIC 399566907 2016-06-10 PHESPV0137 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438927/PHESPV0137.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438927/PHESPV0137.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438927 PHESPV0137 ERR1438925 PHESPV0135 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438925 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438925 e56818dc4734fe21e20a019d5613bddb;e34ed5be5a3badb6f99a892952ecb3dc 1313 200330737 c715e14e0ac424dfc8cee236a84b8cb4;736a4f94e2cc1fdf0d4f5ab3445ee283 SAMEA4023194 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438925/ERR1438925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438925/ERR1438925_2.fastq.gz 2248755 WGS PHESPV0135 RANDOM 134189838;136444057 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline adf595ae480229badd9900a8d27fe54b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438925/ERR1438925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438925/ERR1438925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438925/PHESPV0135.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438925/PHESPV0135.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438925/ERR1438925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438925/ERR1438925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438925/PHESPV0135.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438925/PHESPV0135.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141252275;143530892 ERS1194304 ERX1509303 GENOMIC 446357415 2016-06-10 PHESPV0135 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438925/PHESPV0135.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438925/PHESPV0135.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438925 PHESPV0135 ERR1438929 PHESPV0139 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438929 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438929 11fd2a8a6097c390044454136e9ae7c0;eded3512bc10ec7e68b52d21de61acfb 1313 126320918 b2f970f94274cadc85983948a1c2beee;4e7ef6ac097008015e7e71cae89ed9e7 SAMEA4023198 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438929/ERR1438929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438929/ERR1438929_2.fastq.gz 1482803 WGS PHESPV0139 RANDOM 83157501;88882705 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab7b6bf95b815988290ef3f49315a9b5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438929/ERR1438929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438929/ERR1438929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438929/PHESPV0139.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438929/PHESPV0139.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438929/ERR1438929_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438929/ERR1438929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438929/PHESPV0139.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438929/PHESPV0139.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88055646;93749677 ERS1194308 ERX1509307 GENOMIC 294541107 2016-06-10 PHESPV0139 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438929/PHESPV0139.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438929/PHESPV0139.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438929 PHESPV0139 ERR1438934 PHESPV0144 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438934 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438934 96e82309cd4fa457404950b91e81a035;e8a9266bac94c6a0294db438793fa131 1313 237355854 b4aae5962caef8f7f6c1c8577179b42f;ae626db8e3eca34ff540772a210ef1dc SAMEA4023203 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438934/ERR1438934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438934/ERR1438934_2.fastq.gz 2657302 WGS PHESPV0144 RANDOM 159288468;161624240 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21c866105cf5126eb3e097db896e7229 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438934/ERR1438934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438934/ERR1438934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438934/PHESPV0144.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438934/PHESPV0144.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438934/ERR1438934_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438934/ERR1438934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438934/PHESPV0144.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438934/PHESPV0144.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 167448307;169811024 ERS1194313 ERX1509312 GENOMIC 527605637 2016-06-10 PHESPV0144 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438934/PHESPV0144.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438934/PHESPV0144.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438934 PHESPV0144 ERR1438938 PHESPV0148 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438938 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438938 434126e8bcf84ce4cb30e2c7589a9f20;5d561032ac8a1d7fe92f64059092cc8f 1313 155573364 5aa228836d352377b65acc369dac1b0a;593ce094652fe1d692abb8930c1fd82f SAMEA4023207 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438938/ERR1438938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438938/ERR1438938_2.fastq.gz 1715330 WGS PHESPV0148 RANDOM 101612005;108021872 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8dbd800b075eb6809d0858eb04444c60 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438938/ERR1438938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438938/ERR1438938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438938/PHESPV0148.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438938/PHESPV0148.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438938/ERR1438938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438938/ERR1438938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438938/PHESPV0148.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438938/PHESPV0148.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107236825;113605584 ERS1194317 ERX1509316 GENOMIC 339766821 2016-06-10 PHESPV0148 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438938/PHESPV0148.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438938/PHESPV0148.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438938 PHESPV0148 ERR1438939 PHESPV0149 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438939 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438939 d54cf73563b5038ebf52900d1288c31c;378a9cc8f366855ff1963d782842c20e 1313 154741818 358249c3289025b50a42fc0cfe9c24a8;7f5647ba3d9a17468cea57ac5a7ca57c SAMEA4023208 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438939/ERR1438939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438939/ERR1438939_2.fastq.gz 1729765 WGS PHESPV0149 RANDOM 103645840;105951892 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5341a2cc4f167cd65f90d0077de05ccf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438939/ERR1438939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438939/ERR1438939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438939/PHESPV0149.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438939/PHESPV0149.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438939/ERR1438939_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438939/ERR1438939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438939/PHESPV0149.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438939/PHESPV0149.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109320206;111634308 ERS1194318 ERX1509317 GENOMIC 343491689 2016-06-10 PHESPV0149 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438939/PHESPV0149.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438939/PHESPV0149.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438939 PHESPV0149 ERR1438944 PHESPV0154 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438944 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438944 ca23d2e79e17812f89048e08cf7ec0f7;3981b88955bce2f8116571f57027d9fe 1313 171459072 017e4c5b72ee39325aa1162cf791fde1;486989385f3515d69c624a90470c877f SAMEA4023213 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438944/ERR1438944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438944/ERR1438944_2.fastq.gz 1921214 WGS PHESPV0154 RANDOM 114737873;116736472 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4d9cbcedc9078c921c2250020895def9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438944/ERR1438944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438944/ERR1438944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438944/PHESPV0154.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438944/PHESPV0154.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438944/ERR1438944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438944/ERR1438944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438944/PHESPV0154.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438944/PHESPV0154.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120912202;122920803 ERS1194323 ERX1509322 GENOMIC 381340602 2016-06-10 PHESPV0154 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438944/PHESPV0154.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438944/PHESPV0154.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438944 PHESPV0154 ERR1439092 PHESPV0303 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439092 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439092 79e9931c20ebe011cac35b26c8d41e8c;dcaa7934198bb631739e88889e36a23f 1313 134003172 c824c6b451bc96d06853033b2ed16bc4;c7626ee11b1167859f83601b15f8cd02 SAMEA4023361 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439092/ERR1439092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439092/ERR1439092_2.fastq.gz 1541585 WGS PHESPV0303 RANDOM 89938653;92126677 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f1d9ce17574a7cee7ac667f39479a0f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439092/ERR1439092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439092/ERR1439092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439092/PHESPV0303.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439092/PHESPV0303.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439092/ERR1439092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439092/ERR1439092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439092/PHESPV0303.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439092/PHESPV0303.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95055074;97242504 ERS1194471 ERX1509470 GENOMIC 305860216 2016-06-10 PHESPV0303 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439092/PHESPV0303.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439092/PHESPV0303.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439092 PHESPV0303 ERR1439479 PHESPV0690 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439479 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439479 6e8d5d30808ba97194a717943ddb79e8;684ad5af47178d442586a45add30f5ca 1313 116981634 8b67bb7bfae13ce1b44e5a94d7b3112e;dfd5e837698a2938ca59d7f986ec2703 SAMEA4023748 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439479/ERR1439479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439479/ERR1439479_2.fastq.gz 1408389 WGS PHESPV0690 RANDOM 78613242;81785383 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 65effa710ee14927a50ecafb9d3f8452 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439479/ERR1439479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439479/ERR1439479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439479/PHESPV0690.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439479/PHESPV0690.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439479/ERR1439479_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439479/ERR1439479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439479/PHESPV0690.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439479/PHESPV0690.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83374965;86598011 ERS1194858 ERX1509857 GENOMIC 275422559 2016-06-10 PHESPV0690 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439479/PHESPV0690.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439479/PHESPV0690.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439479 PHESPV0690 ERR1439487 PHESPV0698 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439487 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439487 8b8468ae75508e9ef4e8b09f73aaf2c3;9334eff6f84e807213febacc1b898108 1313 150883107 eab6037172c9f10cca78b15cd3993d1b;9fc3108b59510e3f23bfd2d59a38c505 SAMEA4023756 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439487/ERR1439487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439487/ERR1439487_2.fastq.gz 1814103 WGS PHESPV0698 RANDOM 101392013;104963763 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 710518609604c74a706e7d7270ab6d82 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439487/ERR1439487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439487/ERR1439487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439487/PHESPV0698.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439487/PHESPV0698.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439487/ERR1439487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439487/ERR1439487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439487/PHESPV0698.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439487/PHESPV0698.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107307984;110961769 ERS1194866 ERX1509865 GENOMIC 354749956 2016-06-10 PHESPV0698 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439487/PHESPV0698.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439487/PHESPV0698.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439487 PHESPV0698 ERR1439863 PHESPV1074 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439863 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439863 1b910a7f423ed4737980b9ae9bb1dbe4;60ecda0b1e3a3e9d3ec024d31c3c2f17 1313 198640363 0520ccd33d240cb9767086ba4593382a;bf5564684d49f4e21c9512bf478bf9a7 SAMEA4024132 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439863/ERR1439863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439863/ERR1439863_2.fastq.gz 2128845 WGS PHESPV1074 RANDOM 131685805;134022612 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e21ca7e0a34ad0263863330cb4639169 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439863/ERR1439863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439863/ERR1439863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439863/PHESPV1074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439863/PHESPV1074.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439863/ERR1439863_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439863/ERR1439863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439863/PHESPV1074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439863/PHESPV1074.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138385377;140734853 ERS1195242 ERX1510241 GENOMIC 420289811 2016-06-10 PHESPV1074 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439863/PHESPV1074.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439863/PHESPV1074.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439863 PHESPV1074 ERR1439781 PHESPV0992 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439781 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439781 2a8a94856df8ae8d9c91e05313bea99e;11af7f0a03b040340bb11e451cc640f8 1313 188337749 800ceaee2b3bc0c31136858e994b8746;ed46e0db354962453afa8940bdf4eb73 SAMEA4024050 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439781/ERR1439781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439781/ERR1439781_2.fastq.gz 2065514 WGS PHESPV0992 RANDOM 124892092;127613002 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30255ee5cc15e02c3707163e37002ad8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439781/ERR1439781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439781/ERR1439781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439781/PHESPV0992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439781/PHESPV0992.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439781/ERR1439781_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439781/ERR1439781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439781/PHESPV0992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439781/PHESPV0992.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131499870;134096868 ERS1195160 ERX1510159 GENOMIC 408722241 2016-06-10 PHESPV0992 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439781/PHESPV0992.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439781/PHESPV0992.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439781 PHESPV0992 ERR1439865 PHESPV1076 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439865 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439865 96244906f03fc37594ca381bfec16e3b;f4d76b604ed8697be4283dddcb01e0a5 1313 183728742 794c0bb3fdfe6b7a2c81c24419fb50e1;1a804f369fe91cbd86dbcb3f67b70c7f SAMEA4024134 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439865/ERR1439865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439865/ERR1439865_2.fastq.gz 1948942 WGS PHESPV1076 RANDOM 120869932;124021313 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 101dba0290939c6c7a4c7a8fc376e98f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439865/ERR1439865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439865/ERR1439865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439865/PHESPV1076.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439865/PHESPV1076.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439865/ERR1439865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439865/ERR1439865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439865/PHESPV1076.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439865/PHESPV1076.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 127050444;130184440 ERS1195244 ERX1510243 GENOMIC 383832380 2016-06-10 PHESPV1076 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439865/PHESPV1076.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439865/PHESPV1076.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439865 PHESPV1076 ERR1439919 PHESPV1130 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439919 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439919 0c64d01d84585091fd6400f099e3c61d;1199b564c37fbafb9fe9dc9371da8496 1313 110100463 8107650705e0501cd7bccec0c2496d93;9835f3dda887d1de625c1288d3d0157c SAMEA4024188 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439919/ERR1439919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439919/ERR1439919_2.fastq.gz 1275995 WGS PHESPV1130 RANDOM 73049763;76543303 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63a595ce47c0d1dd6c6fde7ffa30ebd3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439919/ERR1439919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439919/ERR1439919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439919/PHESPV1130.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439919/PHESPV1130.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439919/ERR1439919_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439919/ERR1439919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439919/PHESPV1130.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439919/PHESPV1130.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77338992;80692276 ERS1195298 ERX1510297 GENOMIC 252805709 2016-06-10 PHESPV1130 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439919/PHESPV1130.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439919/PHESPV1130.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439919 PHESPV1130 ERR1439974 PHESPV1185 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439974 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439974 2f4f50fb489a5798e3102fd68510270f;b68e039cb06895b8dec5ec8491ee6e35 1313 126643728 54dd1db1607f78124294f1618d9105d2;432256b5a2b3fade673f9468612a67d0 SAMEA4024243 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439974/ERR1439974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439974/ERR1439974_2.fastq.gz 1459045 WGS PHESPV1185 RANDOM 83688879;87524669 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c84ca93d1e1a8d0f34d50c9c8749c961 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439974/ERR1439974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439974/ERR1439974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439974/PHESPV1185.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439974/PHESPV1185.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439974/ERR1439974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439974/ERR1439974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439974/PHESPV1185.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439974/PHESPV1185.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88523527;92294273 ERS1195353 ERX1510352 GENOMIC 289711888 2016-06-10 PHESPV1185 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439974/PHESPV1185.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439974/PHESPV1185.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439974 PHESPV1185 ERR1439985 PHESPV1196 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439985 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439985 11a15a730b8e0db7c33db11121bcb700;a864fb49c36a620e5628b5d6fa75539e 1313 125522145 3b139703e7e105f07c1144721c39f051;4f8b27a46b001245b069be9a428fdd8d SAMEA4024254 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439985/ERR1439985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439985/ERR1439985_2.fastq.gz 1436792 WGS PHESPV1196 RANDOM 83329663;86811326 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e2844ea39046e8e9e337f62205e6482f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439985/ERR1439985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439985/ERR1439985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439985/PHESPV1196.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439985/PHESPV1196.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439985/ERR1439985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439985/ERR1439985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439985/PHESPV1196.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439985/PHESPV1196.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88109344;91528085 ERS1195364 ERX1510363 GENOMIC 285363298 2016-06-10 PHESPV1196 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439985/PHESPV1196.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439985/PHESPV1196.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439985 PHESPV1196 ERR1439988 PHESPV1199 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439988 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439988 820c5c0bc9886ccc26ac291acf7461c2;75b857416b8a2e2575924c36d189938d 1313 132715535 182d09618d84f66a5ee8585cc7f8e4c1;8a0a989a750486a44cb3b4e6afb6058a SAMEA4024257 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439988/ERR1439988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439988/ERR1439988_2.fastq.gz 1521994 WGS PHESPV1199 RANDOM 88115041;91284391 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e41be7593d1c91bb74c2696601819c1f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439988/ERR1439988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439988/ERR1439988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439988/PHESPV1199.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439988/PHESPV1199.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439988/ERR1439988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439988/ERR1439988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439988/PHESPV1199.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439988/PHESPV1199.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93127720;96234410 ERS1195367 ERX1510366 GENOMIC 302195789 2016-06-10 PHESPV1199 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439988/PHESPV1199.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439988/PHESPV1199.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439988 PHESPV1199 ERR1440015 PHESPV1226 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440015 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440015 fac5d8b95083ae8451526084afaf4492;72ccac93d003ce7f0aa72dae2e2c32a5 1313 135253271 bf63c977af6b1d9845dc774ec4480af4;ee8dc7e7d8df6549cf972abf701877d6 SAMEA4024284 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440015/ERR1440015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440015/ERR1440015_2.fastq.gz 1556338 WGS PHESPV1226 RANDOM 89999125;93420090 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b8ccdb777ce4d6a9993decdea6d96f3c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440015/ERR1440015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440015/ERR1440015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440015/PHESPV1226.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440015/PHESPV1226.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440015/ERR1440015_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440015/ERR1440015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440015/PHESPV1226.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440015/PHESPV1226.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95149576;98510546 ERS1195394 ERX1510393 GENOMIC 309206250 2016-06-10 PHESPV1226 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440015/PHESPV1226.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440015/PHESPV1226.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440015 PHESPV1226 ERR1440059 PHESPV1270 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440059 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440059 9f22ba8d91c0b8dcd8699460d38b2143;89b55a6ac4b103b98a4023d125e0f868 1313 119159650 41f55d60b42ea5f02cdf1016f6e094f9;c95d5222b77a74414ed9a771e335d261 SAMEA4024328 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440059/ERR1440059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440059/ERR1440059_2.fastq.gz 1385627 WGS PHESPV1270 RANDOM 79501781;82662447 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline acf4b903a0ab63a4c52575cc01d8fca2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440059/ERR1440059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440059/ERR1440059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440059/PHESPV1270.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440059/PHESPV1270.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440059/ERR1440059_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440059/ERR1440059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440059/PHESPV1270.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440059/PHESPV1270.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84120335;87137041 ERS1195438 ERX1510437 GENOMIC 274693778 2016-06-10 PHESPV1270 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440059/PHESPV1270.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440059/PHESPV1270.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440059 PHESPV1270 ERR1440075 PHESPV1286 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440075 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440075 0bb1b514d44d1a07cfd3b10de2461023;9a6ce2b0ad3fcecd10ee07e52f118cbb 1313 148082598 c3e19c883de959cd4eff2fe7aeff0aa2;546341ff20dcf303f2b7635745a65467 SAMEA4024344 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440075/ERR1440075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440075/ERR1440075_2.fastq.gz 1705154 WGS PHESPV1286 RANDOM 97619514;103359005 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 10d923ac964f661638228278fda22374 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440075/ERR1440075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440075/ERR1440075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440075/PHESPV1286.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440075/PHESPV1286.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440075/ERR1440075_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440075/ERR1440075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440075/PHESPV1286.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440075/PHESPV1286.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103192330;108773071 ERS1195454 ERX1510453 GENOMIC 337746598 2016-06-10 PHESPV1286 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440075/PHESPV1286.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440075/PHESPV1286.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440075 PHESPV1286 ERR1440097 PHESPV1308 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440097 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440097 83547b8eef3d2cf0b1965a034a213a2e;b11f1d4195387a8d1990238b91e5ef9a 1313 113708195 12efc8028c4180e1f6d7abd45517d7a2;20e64d389cfdb55025ff622a725ed099 SAMEA4024366 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440097/ERR1440097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440097/ERR1440097_2.fastq.gz 1288827 WGS PHESPV1308 RANDOM 75565428;78365023 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c908b26139ceedd5cc0ee3682aa4e5f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440097/ERR1440097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440097/ERR1440097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440097/PHESPV1308.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440097/PHESPV1308.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440097/ERR1440097_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440097/ERR1440097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440097/PHESPV1308.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440097/PHESPV1308.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 79934286;82635961 ERS1195476 ERX1510475 GENOMIC 255891874 2016-06-10 PHESPV1308 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440097/PHESPV1308.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440097/PHESPV1308.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440097 PHESPV1308 ERR1440110 PHESPV1321 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440110 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440110 fc3f1f42b010bd71306f83e34df474e4;66056ea6a5ac7fd7cf0f61f635948e5b 1313 147017823 3d2e7538147b5f6f3e37f87743aabd34;678287f3705c85a4bfb4dcda8b80cb63 SAMEA4024379 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440110/ERR1440110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440110/ERR1440110_2.fastq.gz 1672596 WGS PHESPV1321 RANDOM 97702096;101606694 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d428e107a0e55acec63495efca7ea753 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440110/ERR1440110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440110/ERR1440110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440110/PHESPV1321.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440110/PHESPV1321.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440110/ERR1440110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440110/ERR1440110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440110/PHESPV1321.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440110/PHESPV1321.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103213137;107013829 ERS1195489 ERX1510488 GENOMIC 332146107 2016-06-10 PHESPV1321 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440110/PHESPV1321.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440110/PHESPV1321.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440110 PHESPV1321 ERR1440124 PHESPV1335 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440124 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440124 d98db25784f28f13f7b660a6873b91e6;53b974cb4f90eb22f927135c8e3e78f2 1313 108509656 62256a88f9dd6d962ba778f1a41b8b2c;5522e934676f94979e407b33f8788deb SAMEA4024393 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440124/ERR1440124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440124/ERR1440124_2.fastq.gz 1213833 WGS PHESPV1335 RANDOM 71581664;75207035 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7c59605dc6831d18bca514521c02df0a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440124/ERR1440124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440124/ERR1440124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440124/PHESPV1335.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440124/PHESPV1335.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440124/ERR1440124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440124/ERR1440124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440124/PHESPV1335.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440124/PHESPV1335.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75738205;79258676 ERS1195503 ERX1510502 GENOMIC 240719306 2016-06-10 PHESPV1335 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440124/PHESPV1335.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440124/PHESPV1335.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440124 PHESPV1335 ERR1440226 PHESPV1440 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440226 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440226 dfa4a679957173e6c2cc71639ec8f337;f122694e12df273f88ca7fd47e91fc3b 1313 122755243 2e6211777f8a982d0dbadbecc44beed2;8786114e2b3cded9b9e1a700dc7e9ba0 SAMEA4024495 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440226/ERR1440226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440226/ERR1440226_2.fastq.gz 1443474 WGS PHESPV1440 RANDOM 80585784;86484809 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ca3698bfa72ca762be234815435a8c2c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440226/ERR1440226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440226/ERR1440226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440226/PHESPV1440.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440226/PHESPV1440.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440226/ERR1440226_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440226/ERR1440226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440226/PHESPV1440.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440226/PHESPV1440.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85373099;91160741 ERS1195605 ERX1510604 GENOMIC 286171042 2016-06-10 PHESPV1440 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440226/PHESPV1440.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440226/PHESPV1440.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440226 PHESPV1440 ERR1440228 PHESPV1442 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440228 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440228 eda4c90f87516f6277ab4a4d68b64d5e;4b372173873748f7a3b46b0a45d1dbca 1313 133095166 1127012d7df968754b83c85ed417e586;f05c89f8c912bb73843fa644d19f282a SAMEA4024497 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440228/ERR1440228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440228/ERR1440228_2.fastq.gz 1585426 WGS PHESPV1442 RANDOM 88567614;93520172 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 43f601057c38ef7e5252a5025830d8f4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440228/ERR1440228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440228/ERR1440228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440228/PHESPV1442.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440228/PHESPV1442.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440228/ERR1440228_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440228/ERR1440228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440228/PHESPV1442.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440228/PHESPV1442.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93753076;98612090 ERS1195607 ERX1510606 GENOMIC 314680817 2016-06-10 PHESPV1442 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440228/PHESPV1442.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440228/PHESPV1442.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440228 PHESPV1442 ERR1440239 PHESPV1453 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440239 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440239 45e9ac065703cb495673962f79e54e13;798edfaec04b34911805404d9135e9d3 1313 162406704 b287c698ae3f7e820f8a1b426f10a74f;9ba6c799dbf03ef123dbc55ab25b97d9 SAMEA4024508 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440239/ERR1440239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440239/ERR1440239_2.fastq.gz 1922618 WGS PHESPV1453 RANDOM 107325085;114478445 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7391f432dc0cd38c3386b6415cc45be5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440239/ERR1440239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440239/ERR1440239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440239/PHESPV1453.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440239/PHESPV1453.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440239/ERR1440239_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440239/ERR1440239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440239/PHESPV1453.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440239/PHESPV1453.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113447607;120515284 ERS1195618 ERX1510617 GENOMIC 381368825 2016-06-10 PHESPV1453 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440239/PHESPV1453.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440239/PHESPV1453.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440239 PHESPV1453 ERR1440262 PHESPV1477 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440262 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440262 b2c4acb6f58d3123610e4e0943d4ca15;e10bfca6af721298c34b9f81ee01235c 1313 133450471 27e539d34a15ffa45286a1e7ba40cf6e;69787273dd004bde517bc0b9e07d833d SAMEA4024531 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440262/ERR1440262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440262/ERR1440262_2.fastq.gz 1584198 WGS PHESPV1477 RANDOM 88345721;93990539 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7fdd36ca321e9f2165c19554926e36e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440262/ERR1440262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440262/ERR1440262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440262/PHESPV1477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440262/PHESPV1477.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440262/ERR1440262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440262/ERR1440262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440262/PHESPV1477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440262/PHESPV1477.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93544127;99153374 ERS1195641 ERX1510640 GENOMIC 314357156 2016-06-10 PHESPV1477 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440262/PHESPV1477.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440262/PHESPV1477.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440262 PHESPV1477 ERR1440304 PHESPV1519 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440304 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440304 ad1f88502ed388a6257cbdda9fa04f49;75121c3cc45e67ab523cc5e3492691da 1313 137664847 70a24331642f053bd91d6a876f704ecc;b4d12cfe33f76ccf68e20aa489ab9cf7 SAMEA4024573 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440304/ERR1440304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440304/ERR1440304_2.fastq.gz 1641961 WGS PHESPV1519 RANDOM 92058188;96325915 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50f6d46df3899bf2de2abf76e3893dba ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440304/ERR1440304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440304/ERR1440304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440304/PHESPV1519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440304/PHESPV1519.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440304/ERR1440304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440304/ERR1440304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440304/PHESPV1519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440304/PHESPV1519.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97426231;101680572 ERS1195683 ERX1510682 GENOMIC 325968637 2016-06-10 PHESPV1519 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440304/PHESPV1519.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440304/PHESPV1519.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440304 PHESPV1519 ERR1440437 PHESPV1652 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440437 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440437 c70f90e5dadbcc06cb61138cdc8b3cf3;011028ed80ea37a3b9794b97c29b7218 1313 146432934 57a8e0ad3cbf8f1c4fa1cfd01e3d3f68;8abf47924723bfad49046f931a6f9a1c SAMEA4024706 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440437/ERR1440437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440437/ERR1440437_2.fastq.gz 1588538 WGS PHESPV1652 RANDOM 103151462;108654566 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2e571c52c63837ab0cc57b37b451d762 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440437/ERR1440437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440437/ERR1440437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440437/PHESPV1652.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440437/PHESPV1652.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440437/ERR1440437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440437/ERR1440437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440437/PHESPV1652.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440437/PHESPV1652.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99112239;104570030 ERS1195816 ERX1510815 GENOMIC 310273529 2016-06-10 PHESPV1652 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440437/PHESPV1652.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440437/PHESPV1652.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440437 PHESPV1652 ERR1440497 PHESPV1712 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440497 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440497 7847b28f74c870496c870edc74bbdf54;f76295310bcca0e7b259c793836be674 1313 118592763 aed97d2e079acf9d7c6ee75e79679b56;a5cc749cdcc9889bf00b2d03be829bab SAMEA4024766 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440497/ERR1440497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440497/ERR1440497_2.fastq.gz 1298346 WGS PHESPV1712 RANDOM 84442365;86549874 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 97dc92301c3ce84936fc736a7689fcb8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440497/ERR1440497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440497/ERR1440497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440497/PHESPV1712.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440497/PHESPV1712.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440497/ERR1440497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440497/ERR1440497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440497/PHESPV1712.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440497/PHESPV1712.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81182793;83288238 ERS1195876 ERX1510875 GENOMIC 252141471 2016-06-10 PHESPV1712 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440497/PHESPV1712.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440497/PHESPV1712.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440497 PHESPV1712 ERR1440501 PHESPV1716 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440501 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440501 b63f813c2e33cc6f7ca516a87f757f51;8bcf54e513c4996192b972504c4c0ff8 1313 168655525 a8d5681d2c598ad51fd70735ad4b3cd7;615a1382098f9ef7dffe69951b80d40b SAMEA4024770 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440501/ERR1440501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440501/ERR1440501_2.fastq.gz 1830799 WGS PHESPV1716 RANDOM 119020589;123680938 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 54df098a420f1e7f95b96d346fc37c22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440501/ERR1440501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440501/ERR1440501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440501/PHESPV1716.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440501/PHESPV1716.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440501/ERR1440501_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440501/ERR1440501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440501/PHESPV1716.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440501/PHESPV1716.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114240651;118882478 ERS1195880 ERX1510879 GENOMIC 355033869 2016-06-10 PHESPV1716 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440501/PHESPV1716.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440501/PHESPV1716.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440501 PHESPV1716 ERR1440502 PHESPV1717 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440502 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440502 a752d9a35701b6c10ccd493ba958c67b;78710c30adb9ceab6e37aa60c1452fba 1313 174808105 52c645ab78fc7a2492416f05c8959579;1cff77455f261c56ee388f56c7519a4d SAMEA4024771 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440502/ERR1440502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440502/ERR1440502_2.fastq.gz 1939467 WGS PHESPV1717 RANDOM 125614827;126846854 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d480bc977f0bfd83a2baf1d9de18c1ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440502/ERR1440502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440502/ERR1440502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440502/PHESPV1717.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440502/PHESPV1717.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440502/ERR1440502_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440502/ERR1440502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440502/PHESPV1717.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440502/PHESPV1717.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120569141;121810235 ERS1195881 ERX1510880 GENOMIC 375324314 2016-06-10 PHESPV1717 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440502/PHESPV1717.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440502/PHESPV1717.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440502 PHESPV1717 ERR1440505 PHESPV1720 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440505 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440505 6277d80a42428941f3dca605c7b34d76;9d48b0cd8ecbfe837cc0dfa1965e9bc8 1313 154573900 d6345e6aabda47c92382ede8c976ceb9;2fae8cae197c3163f58ce417e0152c03 SAMEA4024774 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440505/ERR1440505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440505/ERR1440505_2.fastq.gz 1699811 WGS PHESPV1720 RANDOM 110129034;112968492 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63e4af5578304bbf3b48e9f6d7fc2ad1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440505/ERR1440505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440505/ERR1440505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440505/PHESPV1720.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440505/PHESPV1720.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440505/ERR1440505_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440505/ERR1440505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440505/PHESPV1720.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440505/PHESPV1720.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105662960;108502322 ERS1195884 ERX1510883 GENOMIC 329305576 2016-06-10 PHESPV1720 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440505/PHESPV1720.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440505/PHESPV1720.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440505 PHESPV1720 ERR1440520 PHESPV1735 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440520 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440520 db08f3569718293fc6b1dfebe8548abd;df4fd3812b829a7714a4dea616a3a736 1313 123522186 081317f4943503091cbe36dace2aa768;73f1e86d513300083490b56b7a415dc6 SAMEA4024789 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440520/ERR1440520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440520/ERR1440520_2.fastq.gz 1428759 WGS PHESPV1735 RANDOM 89522341;92344037 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dbc52546601d357c01ddd20557447324 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440520/ERR1440520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440520/ERR1440520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440520/PHESPV1735.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440520/PHESPV1735.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440520/ERR1440520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440520/ERR1440520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440520/PHESPV1735.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440520/PHESPV1735.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85953763;88698867 ERS1195899 ERX1510898 GENOMIC 282702613 2016-06-10 PHESPV1735 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440520/PHESPV1735.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440520/PHESPV1735.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440520 PHESPV1735 ERR1440534 PHESPV1749 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440534 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440534 5b431f614330035a8958554ab367cace;2deb6cd2c440c48f130fad2e9d7db84e 1313 101940820 76835ca1fae02a57be8eae761ca2f790;2eaae0ddc2e0ce34f94222660cb2cd4a SAMEA4024803 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440534/ERR1440534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440534/ERR1440534_2.fastq.gz 1109015 WGS PHESPV1749 RANDOM 72120998;74628212 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5775653674db9bfe21a47b2f3aa02e12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440534/ERR1440534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440534/ERR1440534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440534/PHESPV1749.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440534/PHESPV1749.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440534/ERR1440534_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440534/ERR1440534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440534/PHESPV1749.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440534/PHESPV1749.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69304126;71804808 ERS1195913 ERX1510912 GENOMIC 214217709 2016-06-10 PHESPV1749 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440534/PHESPV1749.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440534/PHESPV1749.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440534 PHESPV1749 ERR1440538 PHESPV1753 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440538 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440538 d6dc3810316c350831b859f3ff7ae785;b2b73b807427452b874fbb4ac28ad6fb 1313 166946348 311b1cd09b6d025971d7e53a3ca1d7c0;f46ce5156c9cc3facd2841802e9c6549 SAMEA4024807 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440538/ERR1440538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440538/ERR1440538_2.fastq.gz 1849103 WGS PHESPV1753 RANDOM 120386023;120884437 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 97a036896195ce94f868eb55243bb8fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440538/ERR1440538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440538/ERR1440538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440538/PHESPV1753.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440538/PHESPV1753.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440538/ERR1440538_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440538/ERR1440538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440538/PHESPV1753.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440538/PHESPV1753.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115540192;116055362 ERS1195917 ERX1510916 GENOMIC 358684746 2016-06-10 PHESPV1753 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440538/PHESPV1753.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440538/PHESPV1753.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440538 PHESPV1753 ERR1440563 PHESPV1778 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440563 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440563 59e8a3c671805f224eee28642de97fbd;8a7c0f8871f7128c5a4c425b61963f6b 1313 156884082 69dde38901789c163104ca2e21b19b02;af0f6812c8d2917ac92cc70cb3f9d78a SAMEA4024832 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440563/ERR1440563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440563/ERR1440563_2.fastq.gz 1840499 WGS PHESPV1778 RANDOM 115600819;116012077 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 90c4456991183c05b01d89899d28f3a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440563/ERR1440563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440563/ERR1440563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440563/PHESPV1778.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440563/PHESPV1778.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440563/ERR1440563_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440563/ERR1440563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440563/PHESPV1778.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440563/PHESPV1778.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110897372;111249264 ERS1195942 ERX1510941 GENOMIC 363667218 2016-06-10 PHESPV1778 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440563/PHESPV1778.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440563/PHESPV1778.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440563 PHESPV1778 ERR1440275 PHESPV1490 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440275 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440275 44c40a276b596234913e74df88d2d854;36eb1731e09aca3de14f3f94f2659825 1313 146201534 39396df886eff9f3f92d1a021cfc3ba3;0d8ce3b0f83f28556ff39161c7661e58 SAMEA4024544 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440275/ERR1440275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440275/ERR1440275_2.fastq.gz 1602166 WGS PHESPV1490 RANDOM 97780144;99760919 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ddc8177289cb0b2104e22c6dfc3e5794 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440275/ERR1440275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440275/ERR1440275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440275/PHESPV1490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440275/PHESPV1490.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440275/ERR1440275_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440275/ERR1440275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440275/PHESPV1490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440275/PHESPV1490.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103081535;105034072 ERS1195654 ERX1510653 GENOMIC 317028179 2016-06-10 PHESPV1490 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440275/PHESPV1490.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440275/PHESPV1490.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440275 PHESPV1490 ERR1438841 PHESPV0051 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438841 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438841 175b65af19ce9e59550788a4c66eff07;713b9dc2c5852147e7ad5ffa1dd1e965 1313 123729084 f1b5c64c1e7a7d1662a9b38ce563c547;4325f937774bb4baba5fafa3f99b2477 SAMEA4023110 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438841/ERR1438841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438841/ERR1438841_2.fastq.gz 1451768 WGS PHESPV0051 RANDOM 83041061;85780946 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline dcda3dcfa5be7f907dbca5256f486765 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438841/ERR1438841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438841/ERR1438841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438841/PHESPV0051.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438841/PHESPV0051.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438841/ERR1438841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438841/ERR1438841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438841/PHESPV0051.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438841/PHESPV0051.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87828973;90558935 ERS1194220 ERX1509219 GENOMIC 288759401 2016-06-10 PHESPV0051 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438841/PHESPV0051.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438841/PHESPV0051.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438841 PHESPV0051 ERR1438851 PHESPV0061 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438851 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438851 b5d5d5adf8862e8f4bb92852336db28f;069e50df92e3703f0aabeeec34c2cd93 1313 154785289 ef22a07dcd8aaeaabdccf69b816912c0;8846fb36c79c8f44d0cc6c995c2a50d8 SAMEA4023120 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438851/ERR1438851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438851/ERR1438851_2.fastq.gz 1805694 WGS PHESPV0061 RANDOM 102849782;108358948 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e194ae87f2bf05f2c57aa2d10fda4d5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438851/ERR1438851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438851/ERR1438851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438851/PHESPV0061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438851/PHESPV0061.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438851/ERR1438851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438851/ERR1438851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438851/PHESPV0061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438851/PHESPV0061.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108702475;114187229 ERS1194230 ERX1509229 GENOMIC 358964220 2016-06-10 PHESPV0061 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438851/PHESPV0061.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438851/PHESPV0061.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438851 PHESPV0061 ERR1438859 PHESPV0069 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438859 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438859 5761229d0f0d8acfcaba34b7594e1f3c;a004bf3e18c32e34222e0474e618615b 1313 145181010 c3a0192599007d3b9949a98ceb9b9541;5cf3cb2e6fb7cad358b5c9f90d888355 SAMEA4023128 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438859/ERR1438859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438859/ERR1438859_2.fastq.gz 1668081 WGS PHESPV0069 RANDOM 94444490;102750052 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 63fd37589d424957e6928998c2b69d45 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438859/ERR1438859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438859/ERR1438859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438859/PHESPV0069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438859/PHESPV0069.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438859/ERR1438859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438859/ERR1438859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438859/PHESPV0069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438859/PHESPV0069.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99917849;108170987 ERS1194238 ERX1509237 GENOMIC 331080243 2016-06-10 PHESPV0069 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438859/PHESPV0069.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438859/PHESPV0069.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438859 PHESPV0069 ERR1438872 PHESPV0082 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438872 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438872 31ff7b78f1e8b168298e00e8699accc4;6709f17c9eb232fe293a0c583d55ec84 1313 66292749 fc1ab146aae6036eb7707a62c1d7342c;aa8f7a394fc00dd4a6bb134a77019dbc SAMEA4023141 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438872/ERR1438872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438872/ERR1438872_2.fastq.gz 750448 WGS PHESPV0082 RANDOM 43503751;46523762 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4eb08c97d1dd38a5d398b2f96504814d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438872/ERR1438872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438872/ERR1438872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438872/PHESPV0082.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438872/PHESPV0082.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438872/ERR1438872_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438872/ERR1438872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438872/PHESPV0082.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438872/PHESPV0082.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 46213673;49190198 ERS1194251 ERX1509250 GENOMIC 149027768 2016-06-10 PHESPV0082 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438872/PHESPV0082.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438872/PHESPV0082.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438872 PHESPV0082 ERR1438876 PHESPV0086 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438876 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438876 8a25bb23413e4a0294827b72dc34593d;35d03d2cab8fa5739d3308b828be8771 1313 139357041 bec3d9b658ecec6785b30225b2a924b7;3427c50b777eb22375065b49a47e2493 SAMEA4023145 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438876/ERR1438876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438876/ERR1438876_2.fastq.gz 1638758 WGS PHESPV0086 RANDOM 93394547;97188903 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6c1751f002d413d5671db433f506a37a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438876/ERR1438876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438876/ERR1438876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438876/PHESPV0086.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438876/PHESPV0086.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438876/ERR1438876_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438876/ERR1438876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438876/PHESPV0086.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438876/PHESPV0086.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98792614;102570017 ERS1194255 ERX1509254 GENOMIC 325919370 2016-06-10 PHESPV0086 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438876/PHESPV0086.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438876/PHESPV0086.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438876 PHESPV0086 ERR1438891 PHESPV0101 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438891 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438891 962e0a692077231e55a95094ba0c8484;a1137ec9e7ee95409b0db0e9ea77f1a4 1313 138768821 a9f1bfc4e553e9f1bfbfa9b643eb7cf1;da46b8ca8b95e0201b6ff5a90ff149a0 SAMEA4023160 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438891/ERR1438891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438891/ERR1438891_2.fastq.gz 1630888 WGS PHESPV0101 RANDOM 93041908;96739770 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e38394e1c960b65deb9d6f31865a3542 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438891/ERR1438891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438891/ERR1438891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438891/PHESPV0101.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438891/PHESPV0101.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438891/ERR1438891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438891/ERR1438891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438891/PHESPV0101.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438891/PHESPV0101.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98410411;102056077 ERS1194270 ERX1509269 GENOMIC 323871558 2016-06-10 PHESPV0101 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438891/PHESPV0101.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438891/PHESPV0101.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438891 PHESPV0101 ERR1438904 PHESPV0114 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438904 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438904 79efa84b27b42d0f3f688487e8f59840;34930477a458be70a5c6e0bd3ec457f0 1313 188276449 43c9da7a405ed3e600a7b97119d65a50;4a4e23e1d96dd2e3f2b007a4b3ced53c SAMEA4023173 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438904/ERR1438904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438904/ERR1438904_2.fastq.gz 2096042 WGS PHESPV0114 RANDOM 125464152;128885767 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c7d24f5b8ad85f41b1c928c97d2b954c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438904/ERR1438904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438904/ERR1438904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438904/PHESPV0114.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438904/PHESPV0114.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438904/ERR1438904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438904/ERR1438904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438904/PHESPV0114.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438904/PHESPV0114.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 132097847;135520456 ERS1194283 ERX1509282 GENOMIC 415743853 2016-06-10 PHESPV0114 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438904/PHESPV0114.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438904/PHESPV0114.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438904 PHESPV0114 ERR1439424 PHESPV0635 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439424 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439424 2271d88bfd542da5da839bcb30c8f29f;62776491a076dcd5c696fab619eeee18 1313 185292960 86fa2d0f94f8b460bdb39a2693b39e6c;fafb374f8e3094a7d12d6de7716321a9 SAMEA4023693 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439424/ERR1439424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439424/ERR1439424_2.fastq.gz 2309789 WGS PHESPV0635 RANDOM 124681522;129814255 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 988a044e8dc060c21067b4383e27c315 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439424/ERR1439424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439424/ERR1439424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439424/PHESPV0635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439424/PHESPV0635.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439424/ERR1439424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439424/ERR1439424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439424/PHESPV0635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439424/PHESPV0635.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 131861699;136967661 ERS1194803 ERX1509802 GENOMIC 452670902 2016-06-10 PHESPV0635 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439424/PHESPV0635.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439424/PHESPV0635.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439424 PHESPV0635 ERR1439390 PHESPV0601 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439390 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439390 f6930389ef277ba1d28a954eac4157e5;504035ba6291505960caa087296b3be0 1313 157937738 079bc625ebe57eab009cb940e6040fa0;47ef2636b9fa30bd070ad6cbe433e87c SAMEA4023659 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439390/ERR1439390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439390/ERR1439390_2.fastq.gz 1951577 WGS PHESPV0601 RANDOM 105808719;111369320 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 18db9623d81488e3ed5290801986da14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439390/ERR1439390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439390/ERR1439390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439390/PHESPV0601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439390/PHESPV0601.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439390/ERR1439390_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439390/ERR1439390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439390/PHESPV0601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439390/PHESPV0601.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112124243;117657677 ERS1194769 ERX1509768 GENOMIC 381773421 2016-06-10 PHESPV0601 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439390/PHESPV0601.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439390/PHESPV0601.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439390 PHESPV0601 ERR1438942 PHESPV0152 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438942 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438942 2347c9afed9a2eb789d55af186dfab7f;2788b94d935b8694f0afdcb473824bd9 1313 169487436 b77a7259d935aff03e65f316c6fd9a22;2ded6766d3531cbbd8ca7f21d37ea11c SAMEA4023211 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438942/ERR1438942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438942/ERR1438942_2.fastq.gz 1878497 WGS PHESPV0152 RANDOM 113683121;115325625 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 01be4e0d0083d19b0046cd3ce9ba0176 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438942/ERR1438942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438942/ERR1438942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438942/PHESPV0152.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438942/PHESPV0152.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438942/ERR1438942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438942/ERR1438942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438942/PHESPV0152.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438942/PHESPV0152.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119750884;121413687 ERS1194321 ERX1509320 GENOMIC 372860325 2016-06-10 PHESPV0152 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438942/PHESPV0152.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438942/PHESPV0152.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438942 PHESPV0152 ERR1439491 PHESPV0702 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439491 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439491 41c0c404605d88bd0fb4b60848239492;b2a0ca74ef5eae45df58848120810894 1313 129143346 f8cb378108dbf15bdc915e5546ac6efd;ee7989e0d81376e799d45c0c6cf992c7 SAMEA4023760 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439491/ERR1439491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439491/ERR1439491_2.fastq.gz 1555856 WGS PHESPV0702 RANDOM 86687060;90502098 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2b2f8e96c03bc1bab06c0dfb85e9aa66 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439491/ERR1439491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439491/ERR1439491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439491/PHESPV0702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439491/PHESPV0702.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439491/ERR1439491_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439491/ERR1439491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439491/PHESPV0702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439491/PHESPV0702.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91896715;95764567 ERS1194870 ERX1509869 GENOMIC 304224854 2016-06-10 PHESPV0702 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439491/PHESPV0702.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439491/PHESPV0702.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439491 PHESPV0702 ERR1439506 PHESPV0717 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439506 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439506 9098b18d7fb63782c1ce863bff299364;7a72bdbc03c95edc0ad5358851a63fe9 1313 128413720 0f0236682a9ce7b788efb137bbe3ae7b;7ad4bb45ee7655ddc9bb65534e075db6 SAMEA4023775 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439506/ERR1439506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439506/ERR1439506_2.fastq.gz 1552590 WGS PHESPV0717 RANDOM 86494708;89829275 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d3711560e3023a2daa38ccc9bed096d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439506/ERR1439506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439506/ERR1439506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439506/PHESPV0717.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439506/PHESPV0717.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439506/ERR1439506_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439506/ERR1439506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439506/PHESPV0717.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439506/PHESPV0717.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91688811;95077363 ERS1194885 ERX1509884 GENOMIC 303818930 2016-06-10 PHESPV0717 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439506/PHESPV0717.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439506/PHESPV0717.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439506 PHESPV0717 ERR1439777 PHESPV0988 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439777 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439777 2644a49435adc16381cff7a428288f6b;3857f55410d4719d509ac97ada261de2 1313 179348053 882fe711670add12f086d0b62fd3092e;3833db37e1d5f495860f0c6a196bf9e0 SAMEA4024046 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439777/ERR1439777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439777/ERR1439777_2.fastq.gz 1946168 WGS PHESPV0988 RANDOM 118581402;121963960 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 22b62b16929ed08d2bf9f3b835e8c34a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439777/ERR1439777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439777/ERR1439777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439777/PHESPV0988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439777/PHESPV0988.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439777/ERR1439777_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439777/ERR1439777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439777/PHESPV0988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439777/PHESPV0988.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124861168;128108203 ERS1195156 ERX1510155 GENOMIC 384836809 2016-06-10 PHESPV0988 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439777/PHESPV0988.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439777/PHESPV0988.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439777 PHESPV0988 ERR1439548 PHESPV0759 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439548 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439548 4252278a6e07b4b03892904ae5b60b0a;cfe02e6820ce29da0d4d0bc56efc6806 1313 169135641 a6bf58b1271bbefcfe5c6e152bf018a5;2717ec6dbf2c16cc160de6c97a1436e1 SAMEA4023817 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439548/ERR1439548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439548/ERR1439548_2.fastq.gz 1946023 WGS PHESPV0759 RANDOM 112191579;115742300 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 888392e4e94a59b3f9f59248b94af2a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439548/ERR1439548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439548/ERR1439548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439548/PHESPV0759.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439548/PHESPV0759.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439548/ERR1439548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439548/ERR1439548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439548/PHESPV0759.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439548/PHESPV0759.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 118394646;121957413 ERS1194927 ERX1509926 GENOMIC 385881270 2016-06-10 PHESPV0759 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439548/PHESPV0759.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439548/PHESPV0759.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439548 PHESPV0759 ERR1439537 PHESPV0748 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439537 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439537 8ec7e86ab2eb23c59500a2a7084ac77a;3ceabf148fbf63457cc285279dfffb9a 1313 118174724 1270e34432e32b90686edaa0604ff81e;5a0e31d0e641b72655f33dfce4dcf7b1 SAMEA4023806 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439537/ERR1439537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439537/ERR1439537_2.fastq.gz 1418040 WGS PHESPV0748 RANDOM 80402254;81392605 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a4ce2abfb4614cfd450ea6c70cc65647 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439537/ERR1439537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439537/ERR1439537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439537/PHESPV0748.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439537/PHESPV0748.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439537/ERR1439537_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439537/ERR1439537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439537/PHESPV0748.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439537/PHESPV0748.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85200129;86191496 ERS1194916 ERX1509915 GENOMIC 276581415 2016-06-10 PHESPV0748 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439537/PHESPV0748.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439537/PHESPV0748.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439537 PHESPV0748 ERR1439808 PHESPV1019 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439808 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439808 97832dc58b00626d39969a55fdedcc5a;6ba0ca072080d33cc0a3dc0f108672bd 1313 124052146 6b9f3619da8008b1f06823b4909e2882;544e32dcdaf92746dddbead1e23914ee SAMEA4024077 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439808/ERR1439808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439808/ERR1439808_2.fastq.gz 1487990 WGS PHESPV1019 RANDOM 84258474;85570886 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 565be6fbfdc6c2f9e3e2f78f070651c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439808/ERR1439808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439808/ERR1439808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439808/PHESPV1019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439808/PHESPV1019.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439808/ERR1439808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439808/ERR1439808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439808/PHESPV1019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439808/PHESPV1019.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89203072;90536700 ERS1195187 ERX1510186 GENOMIC 296017053 2016-06-10 PHESPV1019 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439808/PHESPV1019.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439808/PHESPV1019.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439808 PHESPV1019 ERR1439894 PHESPV1105 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439894 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439894 b95f94674effc3df7657f15165eeb70f;2e7c81aa22a76c51eac058eeb8b2a8c5 1313 179533797 28051cf611f9f213339c8ec70c77ee67;4a9d5f0d812072058a22582b5863a095 SAMEA4024163 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439894/ERR1439894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439894/ERR1439894_2.fastq.gz 2014462 WGS PHESPV1105 RANDOM 120444381;122001337 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7118f5467c9369fb7a702d713cf2b805 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439894/ERR1439894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439894/ERR1439894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439894/PHESPV1105.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439894/PHESPV1105.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439894/ERR1439894_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439894/ERR1439894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439894/PHESPV1105.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439894/PHESPV1105.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126887854;128456842 ERS1195273 ERX1510272 GENOMIC 399825313 2016-06-10 PHESPV1105 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439894/PHESPV1105.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439894/PHESPV1105.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439894 PHESPV1105 ERR1439906 PHESPV1117 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439906 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439906 c9947996537a820c8fa4af35866aa2ca;a590bcc8442560b7227262222965ebae 1313 129129810 f4806a907e07727891769ec4428e55b0;4f2b69343dc5db6309b68dd80fee2e6a SAMEA4024175 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439906/ERR1439906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439906/ERR1439906_2.fastq.gz 1429335 WGS PHESPV1117 RANDOM 85372312;88507058 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5afd483680e739462b8a8b3de1e198b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439906/ERR1439906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439906/ERR1439906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439906/PHESPV1117.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439906/PHESPV1117.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439906/ERR1439906_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439906/ERR1439906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439906/PHESPV1117.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439906/PHESPV1117.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90124143;93234449 ERS1195285 ERX1510284 GENOMIC 283084067 2016-06-10 PHESPV1117 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439906/PHESPV1117.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439906/PHESPV1117.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439906 PHESPV1117 ERR1439918 PHESPV1129 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439918 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439918 85c21b736c9be51211bb059ce17c7acb;fa488b0b94aff50a731843fc1ed9bd97 1313 155650325 993e864d77274de238f8f664e41a9616;e32246bd46afb424a3b1bf411f2e0ef5 SAMEA4024187 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439918/ERR1439918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439918/ERR1439918_2.fastq.gz 1864019 WGS PHESPV1129 RANDOM 103835230;107197200 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8da6eeda3c697043a95abeddcecb8689 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439918/ERR1439918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439918/ERR1439918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439918/PHESPV1129.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439918/PHESPV1129.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439918/ERR1439918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439918/ERR1439918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439918/PHESPV1129.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439918/PHESPV1129.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109764970;113119487 ERS1195297 ERX1510296 GENOMIC 370413035 2016-06-10 PHESPV1129 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439918/PHESPV1129.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439918/PHESPV1129.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439918 PHESPV1129 ERR1439922 PHESPV1133 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439922 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439922 d179ebbad70a4e378de78a104efc6793;2c03a6e9aa5910c76e69e9ecbec9f985 1313 131098012 051460ece6faf08c8036e27db9d668d7;af39dc33dd1422f14c9be9c1eae3e1bb SAMEA4024191 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439922/ERR1439922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439922/ERR1439922_2.fastq.gz 1562599 WGS PHESPV1133 RANDOM 88229354;90995309 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e4db26b45a23baab3477ff354e52855d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439922/ERR1439922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439922/ERR1439922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439922/PHESPV1133.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439922/PHESPV1133.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439922/ERR1439922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439922/ERR1439922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439922/PHESPV1133.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439922/PHESPV1133.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93377922;96117860 ERS1195301 ERX1510300 GENOMIC 310739988 2016-06-10 PHESPV1133 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439922/PHESPV1133.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439922/PHESPV1133.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439922 PHESPV1133 ERR1440013 PHESPV1224 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440013 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440013 5e6969bff00b765b126619aaebdd7abc;2813af23df7966db936fc2399a99df4d 1313 104325054 1a42742d93c7c7526c7cd7d9d1dd42c0;18dae4377ce5ca2ba7924b3c62d2f9aa SAMEA4024282 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440013/ERR1440013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440013/ERR1440013_2.fastq.gz 1193155 WGS PHESPV1224 RANDOM 69260940;72262089 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9b144f88dc3ff326cc1ee6413d05eb23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440013/ERR1440013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440013/ERR1440013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440013/PHESPV1224.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440013/PHESPV1224.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440013/ERR1440013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440013/ERR1440013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440013/PHESPV1224.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440013/PHESPV1224.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73329572;76267817 ERS1195392 ERX1510391 GENOMIC 236926035 2016-06-10 PHESPV1224 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440013/PHESPV1224.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440013/PHESPV1224.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440013 PHESPV1224 ERR1440026 PHESPV1237 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440026 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440026 1ab0417211907bed42a901d3ceb7f979;df1556eec0642ea59e1136f2b6835009 1313 119577207 62ed6018d928c9b54075eb177b1e3c67;80dc46425647171682f5de200049b797 SAMEA4024295 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440026/ERR1440026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440026/ERR1440026_2.fastq.gz 1322610 WGS PHESPV1237 RANDOM 80101667;81937791 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5df5de8f13481a5d985a3294e6c43f8f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440026/ERR1440026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440026/ERR1440026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440026/PHESPV1237.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440026/PHESPV1237.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440026/ERR1440026_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440026/ERR1440026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440026/PHESPV1237.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440026/PHESPV1237.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84573035;86367781 ERS1195405 ERX1510404 GENOMIC 262266327 2016-06-10 PHESPV1237 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440026/PHESPV1237.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440026/PHESPV1237.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440026 PHESPV1237 ERR1440079 PHESPV1290 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440079 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440079 33d8dc97ddfc08ac682a87e8570541eb;5047a826e33e7babf3355c328b0df4d6 1313 133431232 38f5bb86f3c7757ac1e83c81c41ae0d8;90aa68955b0ca4255543d424e6392ab8 SAMEA4024348 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440079/ERR1440079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440079/ERR1440079_2.fastq.gz 1491069 WGS PHESPV1290 RANDOM 86906322;92681649 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 16b46371c240a896f5e630ee4c7778a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440079/ERR1440079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440079/ERR1440079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440079/PHESPV1290.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440079/PHESPV1290.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440079/ERR1440079_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440079/ERR1440079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440079/PHESPV1290.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440079/PHESPV1290.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91851358;97560807 ERS1195458 ERX1510457 GENOMIC 295469598 2016-06-10 PHESPV1290 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440079/PHESPV1290.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440079/PHESPV1290.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440079 PHESPV1290 ERR1440102 PHESPV1313 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440102 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440102 73c88f6d033050f761d379db451ec731;4604869b59a4d733b2a687218c9dbc88 1313 110485746 179553dab64b0435c8a9747af7544eb8;edb6aa7d272463f3ae49eedf8c9a89b8 SAMEA4024371 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440102/ERR1440102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440102/ERR1440102_2.fastq.gz 1242307 WGS PHESPV1313 RANDOM 73700403;76096148 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b550043cccfcbc803f828b18f9fca0bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440102/ERR1440102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440102/ERR1440102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440102/PHESPV1313.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440102/PHESPV1313.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440102/ERR1440102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440102/ERR1440102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440102/PHESPV1313.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440102/PHESPV1313.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77975754;80278937 ERS1195481 ERX1510480 GENOMIC 246645443 2016-06-10 PHESPV1313 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440102/PHESPV1313.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440102/PHESPV1313.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440102 PHESPV1313 ERR1440085 PHESPV1296 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440085 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440085 e7bdf73c3ada687998107647a9011b43;6cd5d21d1b1b414a0986445c82a91009 1313 135221699 c15e096d69d539ccde0335bba667218d;c6adfade19ec4c0630b3a92c77676949 SAMEA4024354 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440085/ERR1440085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440085/ERR1440085_2.fastq.gz 1539323 WGS PHESPV1296 RANDOM 90035350;93101912 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fe6f59f0cd69950f5e20c4e2f434caf7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440085/ERR1440085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440085/ERR1440085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440085/PHESPV1296.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440085/PHESPV1296.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440085/ERR1440085_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440085/ERR1440085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440085/PHESPV1296.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440085/PHESPV1296.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95103635;98135106 ERS1195464 ERX1510463 GENOMIC 305710601 2016-06-10 PHESPV1296 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440085/PHESPV1296.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440085/PHESPV1296.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440085 PHESPV1296 ERR1440105 PHESPV1316 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440105 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440105 f6f6dc2549344db268f830901efa70ca;ebf2dc29e4190a7fdaa183e916fa79c2 1313 151868341 68a0828f9b9678f20d19d361cbe187a8;0dd9fd6aa77f696cd88c626de54faa07 SAMEA4024374 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440105/ERR1440105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440105/ERR1440105_2.fastq.gz 1713574 WGS PHESPV1316 RANDOM 100734611;104329073 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e4ac1e2a10749124bfedc4cbb16ac1b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440105/ERR1440105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440105/ERR1440105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440105/PHESPV1316.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440105/PHESPV1316.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440105/ERR1440105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440105/ERR1440105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440105/PHESPV1316.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440105/PHESPV1316.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106373278;109875939 ERS1195484 ERX1510483 GENOMIC 340211260 2016-06-10 PHESPV1316 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440105/PHESPV1316.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440105/PHESPV1316.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440105 PHESPV1316 ERR1440116 PHESPV1327 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440116 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440116 3f4359cf6378a1fd1e22554c138e58ad;542b13b69d3c6df2a8f666b1acf2905a 1313 109298287 79b98161711d163d02850cff1c2efd0a;2f57b623c6fc8dca095222212cb01a41 SAMEA4024385 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440116/ERR1440116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440116/ERR1440116_2.fastq.gz 1231108 WGS PHESPV1327 RANDOM 72722270;75342165 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 812472f0a9048ffdd5796cb775be646a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440116/ERR1440116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440116/ERR1440116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440116/PHESPV1327.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440116/PHESPV1327.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440116/ERR1440116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440116/ERR1440116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440116/PHESPV1327.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440116/PHESPV1327.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76948556;79467782 ERS1195495 ERX1510494 GENOMIC 244382652 2016-06-10 PHESPV1327 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440116/PHESPV1327.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440116/PHESPV1327.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440116 PHESPV1327 ERR1440129 PHESPV1341 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440129 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440129 4479beb940bcdf1ae144635993e597e0;2b911c93d531ab1de0f74a0817c82ab6 1313 120760814 6b3a1f7964fa933b6e04fc9d3f82cd95;c472abac9edbf4f2fc3bb062957cf67a SAMEA4024398 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440129/ERR1440129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440129/ERR1440129_2.fastq.gz 1364296 WGS PHESPV1341 RANDOM 80292061;83386922 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d0db4d1e82d0bba5c2940fcfb27598e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440129/ERR1440129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440129/ERR1440129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440129/PHESPV1341.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440129/PHESPV1341.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440129/ERR1440129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440129/ERR1440129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440129/PHESPV1341.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440129/PHESPV1341.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84908743;87911226 ERS1195508 ERX1510507 GENOMIC 270866623 2016-06-10 PHESPV1341 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440129/PHESPV1341.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440129/PHESPV1341.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440129 PHESPV1341 ERR1440168 PHESPV1381 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440168 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440168 68429f7ef77137229954f5748bacab86;de5dc4c45d75eae27b0d8e156704ebf3 1313 133317874 7a96fd378c0572ce12597df5121c1ca1;76108dc11cc8e8a18c5d489a597a8ead SAMEA4024437 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440168/ERR1440168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440168/ERR1440168_2.fastq.gz 1501438 WGS PHESPV1381 RANDOM 88830736;91866879 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 75280d1caa9aba8f92037a867772cd6d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440168/ERR1440168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440168/ERR1440168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440168/PHESPV1381.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440168/PHESPV1381.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440168/ERR1440168_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440168/ERR1440168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440168/PHESPV1381.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440168/PHESPV1381.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93878524;96808434 ERS1195547 ERX1510546 GENOMIC 298118280 2016-06-10 PHESPV1381 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440168/PHESPV1381.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440168/PHESPV1381.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440168 PHESPV1381 ERR1440178 PHESPV1391 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440178 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440178 637080bc1c409a8e1ea275c28801bdeb;195c2b93b3027cf042e53290acb46679 1313 169541623 884cbe8c3cfeb8807a6fd72c2b151b73;affd9774f93eb5a416859651f5bb5128 SAMEA4024447 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440178/ERR1440178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440178/ERR1440178_2.fastq.gz 1752852 WGS PHESPV1391 RANDOM 111262437;114986610 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a52e0f82ea818543acacd172e14dc928 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440178/ERR1440178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440178/ERR1440178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440178/PHESPV1391.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440178/PHESPV1391.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440178/ERR1440178_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440178/ERR1440178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440178/PHESPV1391.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440178/PHESPV1391.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116953347;120580353 ERS1195557 ERX1510556 GENOMIC 344723303 2016-06-10 PHESPV1391 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440178/PHESPV1391.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440178/PHESPV1391.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440178 PHESPV1391 ERR1440183 PHESPV1396 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440183 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440183 d352d50939624a6bb3fa1f08241b0a83;2ac6cb92fca53702ad79be739aafd468 1313 181036329 b841e2b0a8900352bef31c97a081809c;8808513445acbbb7a305fb6f88d366a4 SAMEA4024452 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440183/ERR1440183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440183/ERR1440183_2.fastq.gz 1890887 WGS PHESPV1396 RANDOM 119736415;122496028 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2047d2c3640f77c5c828201e8a2e6f6d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440183/ERR1440183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440183/ERR1440183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440183/PHESPV1396.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440183/PHESPV1396.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440183/ERR1440183_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440183/ERR1440183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440183/PHESPV1396.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440183/PHESPV1396.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125865776;128554401 ERS1195562 ERX1510561 GENOMIC 372806354 2016-06-10 PHESPV1396 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440183/PHESPV1396.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440183/PHESPV1396.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440183 PHESPV1396 ERR1440243 PHESPV1458 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440243 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440243 8e8a23e1dea816a51b57b49e68ab7bf0;97d0f724eee8f426674b812c5f7540aa 1313 210045324 cee536122309aee35d305b9d0c6d5890;944794e2d3dee901614c3a14b9713a69 SAMEA4024512 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440243/ERR1440243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440243/ERR1440243_2.fastq.gz 2493765 WGS PHESPV1458 RANDOM 138455266;148429241 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b2773c7d4cd49ee06f7a08231e05464b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440243/ERR1440243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440243/ERR1440243_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440243/PHESPV1458.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440243/PHESPV1458.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440243/ERR1440243_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440243/ERR1440243_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440243/PHESPV1458.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440243/PHESPV1458.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 146137657;155996382 ERS1195622 ERX1510621 GENOMIC 494681342 2016-06-10 PHESPV1458 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440243/PHESPV1458.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440243/PHESPV1458.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440243 PHESPV1458 ERR1440260 PHESPV1475 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440260 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440260 212915f6d4ac847ed60fe6b8b51f3c4b;6fd534e0c126f912cd7a889e0c02d3df 1313 113073011 4b1eb572cf1ce3c8f1b6e87ba6301703;af5a698e2cf55446115411feae406c33 SAMEA4024529 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440260/ERR1440260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440260/ERR1440260_2.fastq.gz 1358057 WGS PHESPV1475 RANDOM 76476377;78823306 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7b6aa5f074a254d3a720883c782d6bdb ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440260/ERR1440260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440260/ERR1440260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440260/PHESPV1475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440260/PHESPV1475.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440260/ERR1440260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440260/ERR1440260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440260/PHESPV1475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440260/PHESPV1475.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81033838;83365066 ERS1195639 ERX1510638 GENOMIC 269803698 2016-06-10 PHESPV1475 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440260/PHESPV1475.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440260/PHESPV1475.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440260 PHESPV1475 ERR1440261 PHESPV1476 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440261 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440261 9883fb2600e74e440ddfbeab86b690e4;5573c2ed351e1ae22a80bb0105c3827f 1313 160991056 1ac4d32e52ca270579636a97dbe21cb8;f918b196e83f1aa0f3d0b1c49a933580 SAMEA4024530 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440261/ERR1440261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440261/ERR1440261_2.fastq.gz 1943472 WGS PHESPV1476 RANDOM 109083460;111859379 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b32038be5b3042b68b045f9211b12942 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440261/ERR1440261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440261/ERR1440261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440261/PHESPV1476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440261/PHESPV1476.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440261/ERR1440261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440261/ERR1440261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440261/PHESPV1476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440261/PHESPV1476.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115311202;118092747 ERS1195640 ERX1510639 GENOMIC 386210349 2016-06-10 PHESPV1476 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440261/PHESPV1476.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440261/PHESPV1476.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440261 PHESPV1476 ERR1440542 PHESPV1757 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440542 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440542 ccc1b11e43e757bed49f5d6a9d103ac3;97a0b0397c08826bd6dff0d33feb20fa 1313 286930614 a8f2850a144d49617c1c53a11a642493;c94c4a2c832243fbb2032e1f14c6ff4f SAMEA4024811 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440542/ERR1440542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440542/ERR1440542_2.fastq.gz 3409669 WGS PHESPV1757 RANDOM 210995817;212934258 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e30aa7258c45d252461bc212ad8fc4c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440542/ERR1440542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440542/ERR1440542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440542/PHESPV1757.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440542/PHESPV1757.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440542/ERR1440542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440542/ERR1440542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440542/PHESPV1757.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440542/PHESPV1757.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 201765276;203662416 ERS1195921 ERX1510920 GENOMIC 672467811 2016-06-10 PHESPV1757 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440542/PHESPV1757.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440542/PHESPV1757.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440542 PHESPV1757 ERR1440543 PHESPV1758 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440543 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440543 00423c748579747db369833df6d8cb2b;74b6cbdabc09c7a07a491b7663e31bca 1313 153181276 ab802b0bbcbddebb035542e1fc54503f;57a57fad121755e62e4cfb0df4a77390 SAMEA4024812 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440543/ERR1440543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440543/ERR1440543_2.fastq.gz 1800568 WGS PHESPV1758 RANDOM 112676170;113585397 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96975500d6a23f86263de71e29b9e013 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440543/ERR1440543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440543/ERR1440543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440543/PHESPV1758.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440543/PHESPV1758.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440543/ERR1440543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440543/ERR1440543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440543/PHESPV1758.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440543/PHESPV1758.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108094452;108951364 ERS1195922 ERX1510921 GENOMIC 356016097 2016-06-10 PHESPV1758 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440543/PHESPV1758.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440543/PHESPV1758.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440543 PHESPV1758 ERR1440547 PHESPV1762 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440547 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440547 e716453007cb9cccec6deee8d781dc46;0eda18ff54cbd740276c5755fb455fca 1313 169815346 fb266dd728ac265e514dacb02c6e34f3;31590358f75fb8a79b5bf69bbbd0e71b SAMEA4024816 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440547/ERR1440547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440547/ERR1440547_2.fastq.gz 1992261 WGS PHESPV1762 RANDOM 124461076;126215920 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 30d425bcbe3be8747876a36dde2a3c9b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440547/ERR1440547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440547/ERR1440547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440547/PHESPV1762.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440547/PHESPV1762.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440547/ERR1440547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440547/ERR1440547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440547/PHESPV1762.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440547/PHESPV1762.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119408270;121117734 ERS1195926 ERX1510925 GENOMIC 394574773 2016-06-10 PHESPV1762 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440547/PHESPV1762.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440547/PHESPV1762.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440547 PHESPV1762 ERR1440549 PHESPV1764 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440549 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440549 d19d3185b11abc8b98f09fadf2007a74;30150a71f6271222364ceedc2db0722f 1313 233757659 818815f03df6a9e9dcb810be01af4e1d;f03ad60bdd3e58189cccb69b5d844a1b SAMEA4024818 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440549/ERR1440549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440549/ERR1440549_2.fastq.gz 2765165 WGS PHESPV1764 RANDOM 171695731;172939840 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 64bb1b10d37a7fa5c0f9f6348e6aba6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440549/ERR1440549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440549/ERR1440549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440549/PHESPV1764.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440549/PHESPV1764.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440549/ERR1440549_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440549/ERR1440549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440549/PHESPV1764.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440549/PHESPV1764.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 164761103;165957588 ERS1195928 ERX1510927 GENOMIC 546092840 2016-06-10 PHESPV1764 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440549/PHESPV1764.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440549/PHESPV1764.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440549 PHESPV1764 ERR1440561 PHESPV1776 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/001/ERR1440561 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440561 c930edb9ec7a7f8d4f028d8114c0cd10;6e48138bed4d9b815da806ed46f8e487 1313 176212946 7fbe0c6a234244ff3b20b42a424a395d;50ac823befb9809bf0ac4c3f9b1f4fb7 SAMEA4024830 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440561/ERR1440561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440561/ERR1440561_2.fastq.gz 2071415 WGS PHESPV1776 RANDOM 129418643;130748406 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b47875686e18e05cb6b8f14ed1937f74 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440561/ERR1440561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/001/ERR1440561/ERR1440561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440561/PHESPV1776.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440561/PHESPV1776.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440561/ERR1440561_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/001/ERR1440561/ERR1440561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440561/PHESPV1776.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440561/PHESPV1776.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124176936;125455667 ERS1195940 ERX1510939 GENOMIC 410035650 2016-06-10 PHESPV1776 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440561/PHESPV1776.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440561/PHESPV1776.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/001/ERR1440561 PHESPV1776 ERR1440567 PHESPV1782 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440567 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440567 a653d1372eb0a8c8ffcf386c7b819284;e0f9af8995ff00c0150fd0bae1670df1 1313 161743624 eeb14fba53b6a99d9d538afe684851e7;82bcd8c018196d643ffbbc802f35e692 SAMEA4024836 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440567/ERR1440567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440567/ERR1440567_2.fastq.gz 1887033 WGS PHESPV1782 RANDOM 118394884;120045754 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9d66ddeac6d2b87b6ee477891ce2b891 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440567/ERR1440567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440567/ERR1440567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440567/PHESPV1782.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440567/PHESPV1782.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440567/ERR1440567_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440567/ERR1440567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440567/PHESPV1782.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440567/PHESPV1782.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113551042;115148687 ERS1195946 ERX1510945 GENOMIC 372847580 2016-06-10 PHESPV1782 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440567/PHESPV1782.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440567/PHESPV1782.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440567 PHESPV1782 ERR1440568 PHESPV1783 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440568 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440568 1aa4caeda5bc85a23ca348232f741198;ca2d9ffa957bdc35386c6fd5fa8ff72a 1313 186544620 2598b1a821d1dc77daf199bf60efbcf8;05f9e669a5b6c4e4494d8b61f3ad900e SAMEA4024837 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440568/ERR1440568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440568/ERR1440568_2.fastq.gz 2153613 WGS PHESPV1783 RANDOM 134313912;139457295 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e27f28b9e52b9d64fd197b60ccc9064b ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440568/ERR1440568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440568/ERR1440568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440568/PHESPV1783.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440568/PHESPV1783.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440568/ERR1440568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440568/ERR1440568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440568/PHESPV1783.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440568/PHESPV1783.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 128893625;133967065 ERS1195947 ERX1510946 GENOMIC 425322950 2016-06-10 PHESPV1783 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440568/PHESPV1783.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440568/PHESPV1783.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440568 PHESPV1783 ERR1440582 PHESPV1797 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440582 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440582 d33c7164bf44880eb62c5981310c00a7;81ab10cb5bc56f3a9b347944bfd1e551 1313 172494993 9043c9c4c26e2fd498b96217ff4fcd54;c18d9c54896530a660e5c6aae99f9d15 SAMEA4024851 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440582/ERR1440582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440582/ERR1440582_2.fastq.gz 1985569 WGS PHESPV1797 RANDOM 125861040;127677484 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ea97153a92b7ee399f54af67ce931198 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440582/ERR1440582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440582/ERR1440582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440582/PHESPV1797.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440582/PHESPV1797.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440582/ERR1440582_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440582/ERR1440582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440582/PHESPV1797.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440582/PHESPV1797.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120819430;122571576 ERS1195961 ERX1510960 GENOMIC 392934506 2016-06-10 PHESPV1797 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440582/PHESPV1797.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440582/PHESPV1797.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440582 PHESPV1797 ERR1440592 PHESPV1807 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440592 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440592 b8e83c8c6c10c7644b39e05069e14b26;06b4bdc3d1c992f89836ee33a36d3c01 1313 193348310 ea2d8fbe18efbf9a5e4826687aa1d420;aaa4dc9191dfab098317a10e5eab821d SAMEA4024861 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440592/ERR1440592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440592/ERR1440592_2.fastq.gz 2154455 WGS PHESPV1807 RANDOM 140061038;141121103 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 951223e4b6e2c12c74d29660ffd0775a ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440592/ERR1440592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440592/ERR1440592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440592/PHESPV1807.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440592/PHESPV1807.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440592/ERR1440592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440592/ERR1440592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440592/PHESPV1807.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440592/PHESPV1807.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134590251;135647716 ERS1195971 ERX1510970 GENOMIC 423118212 2016-06-10 PHESPV1807 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440592/PHESPV1807.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440592/PHESPV1807.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440592 PHESPV1807 ERR1438802 PHESPV0012 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438802 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438802 f807300d1a9a63f734bcc8d5a9316c8d;64a93d58c15ded6c767c264ceb3f9bbf 1313 109039111 da8c8d72321f126d1df4730ad835155a;c72b7162738f74a550435a393dc815d9 SAMEA4023071 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438802/ERR1438802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438802/ERR1438802_2.fastq.gz 1251494 WGS PHESPV0012 RANDOM 72955188;75031365 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 26c46af15fdf4bbbd74d986a4f9b5cac ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438802/ERR1438802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438802/ERR1438802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438802/PHESPV0012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438802/PHESPV0012.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438802/ERR1438802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438802/ERR1438802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438802/PHESPV0012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438802/PHESPV0012.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 77207864;79285456 ERS1194181 ERX1509180 GENOMIC 248293707 2016-06-10 PHESPV0012 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438802/PHESPV0012.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438802/PHESPV0012.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438802 PHESPV0012 ERR1438803 PHESPV0013 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438803 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438803 87d675021a296077d790a6b476bc4d19;0444a98cf8c37cf7b42ba1b60851bf5e 1313 148456461 fd4e5e2309921ef339ed3bd472bba008;3d981943650262aaa2e6d87de23534a4 SAMEA4023072 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438803/ERR1438803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438803/ERR1438803_2.fastq.gz 1704147 WGS PHESPV0013 RANDOM 98562891;101872783 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0acf233e553a5bd62c1e69872a15f11b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438803/ERR1438803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438803/ERR1438803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438803/PHESPV0013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438803/PHESPV0013.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438803/ERR1438803_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438803/ERR1438803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438803/PHESPV0013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438803/PHESPV0013.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104150591;107440898 ERS1194182 ERX1509181 GENOMIC 337983338 2016-06-10 PHESPV0013 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438803/PHESPV0013.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438803/PHESPV0013.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438803 PHESPV0013 ERR1438857 PHESPV0067 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438857 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438857 b0f44aa58580e42161d2f72e165f7974;0f5dc600b6c9cf83cec66a10620cf043 1313 161756386 bc999fff49be89ded760eeb7874c374b;2a17435aa70c0c4d222ca362d6b4883e SAMEA4023126 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438857/ERR1438857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438857/ERR1438857_2.fastq.gz 1903009 WGS PHESPV0067 RANDOM 107815968;113174778 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 35495c49b296e86a951f23d87e77c507 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438857/ERR1438857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438857/ERR1438857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438857/PHESPV0067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438857/PHESPV0067.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438857/ERR1438857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438857/ERR1438857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438857/PHESPV0067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438857/PHESPV0067.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113943858;119282604 ERS1194236 ERX1509235 GENOMIC 378370762 2016-06-10 PHESPV0067 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438857/PHESPV0067.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438857/PHESPV0067.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438857 PHESPV0067 ERR1439121 PHESPV0332 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439121 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439121 8d22f5400a6119ec9844005b6cd257a7;4b943c9a7096df63ec328b5d6b8bc217 1313 147296872 2537d92f7428374665e2db615d7aacd3;83d6640c9454c0e8fbe7b9c5752ba001 SAMEA4023390 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439121/ERR1439121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439121/ERR1439121_2.fastq.gz 1600128 WGS PHESPV0332 RANDOM 106777583;106148155 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b7c8e617ebc562213c446e3a49f6f875 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439121/ERR1439121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439121/ERR1439121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439121/PHESPV0332.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439121/PHESPV0332.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439121/ERR1439121_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439121/ERR1439121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439121/PHESPV0332.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439121/PHESPV0332.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102612255;102002264 ERS1194500 ERX1509499 GENOMIC 313820451 2016-06-10 PHESPV0332 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439121/PHESPV0332.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439121/PHESPV0332.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439121 PHESPV0332 ERR1439124 PHESPV0335 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439124 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439124 b8a65f2ed21f44dfc6605d07cb85e803;9aff38dc682f33db4c8cd4459fcac48a 1313 108155091 90539fb017103694b105ca528be2326b;af1e0a1bfbce55e039c6f44b4ccf881e SAMEA4023393 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439124/ERR1439124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439124/ERR1439124_2.fastq.gz 910579 WGS PHESPV0335 RANDOM 65651744;69005935 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3dd1302e3294dec3f20499736a5354fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439124/ERR1439124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439124/ERR1439124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439124/PHESPV0335.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439124/PHESPV0335.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439124/ERR1439124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439124/ERR1439124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439124/PHESPV0335.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439124/PHESPV0335.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68819837;72181641 ERS1194503 ERX1509502 GENOMIC 178332794 2016-06-10 PHESPV0335 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439124/PHESPV0335.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439124/PHESPV0335.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439124 PHESPV0335 ERR1438817 PHESPV0027 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438817 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438817 b8439f017f867cb4a362195bac5388be;53ad77d26692f1acf5ce99384142d782 1313 137168108 a5550cb15bfd3fe7a7338474ebc1a29a;e27aec7eb87b09393714c09c2dba1219 SAMEA4023086 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438817/ERR1438817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438817/ERR1438817_2.fastq.gz 1584478 WGS PHESPV0027 RANDOM 92759475;94008231 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0478391c815844e56116188e8108fece ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438817/ERR1438817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438817/ERR1438817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438817/PHESPV0027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438817/PHESPV0027.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438817/ERR1438817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438817/ERR1438817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438817/PHESPV0027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438817/PHESPV0027.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97982399;99216125 ERS1194196 ERX1509195 GENOMIC 314641528 2016-06-10 PHESPV0027 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438817/PHESPV0027.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438817/PHESPV0027.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438817 PHESPV0027 ERR1438964 PHESPV0174 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438964 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438964 2d5f63fd8227e50535fcd517e57b7360;e887cbf34d6a8c176cce12f83e91829e 1313 165180111 532c83d83e4e7b8477f6bd110e0cd4f4;42dbe4ec5deed4123a7c1c61264663bf SAMEA4023233 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438964/ERR1438964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438964/ERR1438964_2.fastq.gz 2093670 WGS PHESPV0174 RANDOM 113443222;114598906 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 43564a71513defe63fbd56ca1b671a60 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438964/ERR1438964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438964/ERR1438964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438964/PHESPV0174.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438964/PHESPV0174.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438964/ERR1438964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438964/ERR1438964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438964/PHESPV0174.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438964/PHESPV0174.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119973514;121121328 ERS1194343 ERX1509342 GENOMIC 411535522 2016-06-10 PHESPV0174 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438964/PHESPV0174.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438964/PHESPV0174.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438964 PHESPV0174 ERR1439159 PHESPV0370 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439159 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439159 ac64aeddd58b65112834f1e20e8a9647;536f067685565c3c2e7c0edc4d0caeea 1313 136470434 bcabaae0054e7afa2137df5301e76f56;f4c593cae466a9fcb443db943eed100f SAMEA4023428 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439159/ERR1439159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439159/ERR1439159_2.fastq.gz 1465403 WGS PHESPV0370 RANDOM 98245723;98480791 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b3fd246657297934d80802f9b172cdd4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439159/ERR1439159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439159/ERR1439159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439159/PHESPV0370.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439159/PHESPV0370.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439159/ERR1439159_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439159/ERR1439159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439159/PHESPV0370.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439159/PHESPV0370.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94467228;94711840 ERS1194538 ERX1509537 GENOMIC 287391595 2016-06-10 PHESPV0370 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439159/PHESPV0370.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439159/PHESPV0370.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439159 PHESPV0370 ERR1439430 PHESPV0641 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439430 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439430 ec3a12a82a8a63f568c5923ecc3e42c4;4ac45ebc8403a846deaf99f5c72924f4 1313 124399268 1a281d08d4572f441fb1e5b5a3d7fcfe;8b285cd736b1c053f8ba0740471594ee SAMEA4023699 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439430/ERR1439430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439430/ERR1439430_2.fastq.gz 1357022 WGS PHESPV0641 RANDOM 88443747;91162840 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 743287f4a5896b820b68860d59c16de7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439430/ERR1439430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439430/ERR1439430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439430/PHESPV0641.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439430/PHESPV0641.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439430/ERR1439430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439430/ERR1439430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439430/PHESPV0641.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439430/PHESPV0641.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85021939;87734402 ERS1194809 ERX1509808 GENOMIC 265467044 2016-06-10 PHESPV0641 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439430/PHESPV0641.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439430/PHESPV0641.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439430 PHESPV0641 ERR1439361 PHESPV0572 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439361 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439361 7de05b349c839c8cd340c5079d17ea83;5de33c8ee1c5b05d5e0b5eb4250791e2 1313 110044163 ce1c7a49d9fad4ba6a9f070a5777f0a3;0c63b532de6864444bf693011caefef9 SAMEA4023630 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439361/ERR1439361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439361/ERR1439361_2.fastq.gz 1232806 WGS PHESPV0572 RANDOM 80061430;79660171 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f0eac9271a056efae7c7ba62ac62ca14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439361/ERR1439361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439361/ERR1439361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439361/PHESPV0572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439361/PHESPV0572.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439361/ERR1439361_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439361/ERR1439361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439361/PHESPV0572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439361/PHESPV0572.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76953113;76578088 ERS1194740 ERX1509739 GENOMIC 239392448 2016-06-10 PHESPV0572 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439361/PHESPV0572.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439361/PHESPV0572.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439361 PHESPV0572 ERR1439265 PHESPV0476 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439265 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439265 ab531cc69987e9b9bc27c8f8c15b8e1d;d064d30d2f5f2f8b15dc061c4841c3d2 1313 206395456 a3bb21812a6a629026b0f6a7178c0031;b18bd285059bd5213dd8e22b138a9875 SAMEA4023534 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439265/ERR1439265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439265/ERR1439265_2.fastq.gz 2227314 WGS PHESPV0476 RANDOM 148636176;148184655 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c18e2545f9280dece2213898dfac0d8a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439265/ERR1439265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439265/ERR1439265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439265/PHESPV0476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439265/PHESPV0476.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439265/ERR1439265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439265/ERR1439265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439265/PHESPV0476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439265/PHESPV0476.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142937204;142499309 ERS1194644 ERX1509643 GENOMIC 435419011 2016-06-10 PHESPV0476 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439265/PHESPV0476.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439265/PHESPV0476.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439265 PHESPV0476 ERR1439437 PHESPV0648 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439437 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439437 f03c98cc7f14cd34a58c1efecae7e685;8cfcc3dab774d000c8ff2dd7a3ed654e 1313 198715965 7c1a6dd11adb2ef519c4be131eb63ba1;b8f8b86adc0d82cc79cc2b138804f7c0 SAMEA4023706 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439437/ERR1439437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439437/ERR1439437_2.fastq.gz 2484041 WGS PHESPV0648 RANDOM 134523681;139264513 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4f4d7201f98a59375dbf529e854c2493 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439437/ERR1439437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439437/ERR1439437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439437/PHESPV0648.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439437/PHESPV0648.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439437/ERR1439437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439437/ERR1439437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439437/PHESPV0648.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439437/PHESPV0648.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 142199566;146922022 ERS1194816 ERX1509815 GENOMIC 487376018 2016-06-10 PHESPV0648 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439437/PHESPV0648.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439437/PHESPV0648.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439437 PHESPV0648 ERR1439453 PHESPV0664 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439453 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439453 a429b0d6f664fae28061716641e5abb5;7ba1bb2fe6535e34dbf30c533eaa7b68 1313 101209000 7af77c8c4ce382072db6fe1210a8b205;3d7f7f14d90c17db3566f0f4533c862d SAMEA4023722 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439453/ERR1439453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439453/ERR1439453_2.fastq.gz 1111822 WGS PHESPV0664 RANDOM 72890957;73807395 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3e200f71d39981805f22d7ed97dfe8fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439453/ERR1439453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439453/ERR1439453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439453/PHESPV0664.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439453/PHESPV0664.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439453/ERR1439453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439453/ERR1439453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439453/PHESPV0664.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439453/PHESPV0664.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 70076014;71004268 ERS1194832 ERX1509831 GENOMIC 218282747 2016-06-10 PHESPV0664 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439453/PHESPV0664.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439453/PHESPV0664.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439453 PHESPV0664 ERR1439450 PHESPV0661 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439450 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439450 c3f78f003c0ec0fd8b9afbf63a0dbbef;d436c1d76885d11b1c5a9dad64fc202f 1313 227923006 58f33f240ec2dcaa945e610fec02978e;919c752a4aeff72d9336e8d2b87955fb SAMEA4023719 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439450/ERR1439450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439450/ERR1439450_2.fastq.gz 2846993 WGS PHESPV0661 RANDOM 154292608;159805195 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5684a8278eef22dcb8a776fb2f13002b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439450/ERR1439450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439450/ERR1439450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439450/PHESPV0661.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439450/PHESPV0661.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439450/ERR1439450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439450/ERR1439450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439450/PHESPV0661.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439450/PHESPV0661.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 162880965;168375983 ERS1194829 ERX1509828 GENOMIC 558356508 2016-06-10 PHESPV0661 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439450/PHESPV0661.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439450/PHESPV0661.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439450 PHESPV0661 ERR1439576 PHESPV0787 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439576 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439576 fdbe4e36e14a2b5779cdd237242d5543;4c891d6d619bfd9baed8879159b1e9dd 1313 291486278 08181f596d573a96f0f8300eeeee833d;72e9ec4e649906e8f2d8636b4fc1d588 SAMEA4023845 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439576/ERR1439576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439576/ERR1439576_2.fastq.gz 2313953 WGS PHESPV0787 RANDOM 180844061;182904743 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d03ef84ec1697c1d0a99817d5aaafe3a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439576/ERR1439576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439576/ERR1439576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439576/PHESPV0787.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439576/PHESPV0787.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439576/ERR1439576_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439576/ERR1439576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439576/PHESPV0787.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439576/PHESPV0787.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 187930734;189959140 ERS1194955 ERX1509954 GENOMIC 448140987 2016-06-10 PHESPV0787 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439576/PHESPV0787.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439576/PHESPV0787.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439576 PHESPV0787 ERR1439554 PHESPV0765 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439554 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439554 ee28f565af5e9de4d35b93443c14dffb;29555d5a112a5aef7d0d528ddf0e7b1e 1313 107432310 819a8a09c67a94b4de506184d68a5eba;6fb6ba1d77416aeae7687dc8ed0816f5 SAMEA4023823 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439554/ERR1439554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439554/ERR1439554_2.fastq.gz 1147847 WGS PHESPV0765 RANDOM 77559508;77478825 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline efec154f24bc60100e1a125ae45e4e1f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439554/ERR1439554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439554/ERR1439554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439554/PHESPV0765.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439554/PHESPV0765.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439554/ERR1439554_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439554/ERR1439554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439554/PHESPV0765.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439554/PHESPV0765.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74684928;74605182 ERS1194933 ERX1509932 GENOMIC 223468581 2016-06-10 PHESPV0765 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439554/PHESPV0765.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439554/PHESPV0765.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439554 PHESPV0765 ERR1439584 PHESPV0795 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1439584 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439584 6db6b967bf942140c09d3c6caf977cca;131b01d8a10e1ce35c6776607f9abb63 1313 82764905 9b091e921729067677b85633ebf8ea1d;6d1cc0dabe65235e990912193e166f23 SAMEA4023853 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439584/ERR1439584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439584/ERR1439584_2.fastq.gz 879372 WGS PHESPV0795 RANDOM 59721341;59837976 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2838b3a8f485502b5c5a9f47feec4c31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439584/ERR1439584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1439584/ERR1439584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439584/PHESPV0795.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439584/PHESPV0795.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439584/ERR1439584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1439584/ERR1439584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439584/PHESPV0795.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439584/PHESPV0795.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 57531398;57650468 ERS1194963 ERX1509962 GENOMIC 172039730 2016-06-10 PHESPV0795 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439584/PHESPV0795.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439584/PHESPV0795.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1439584 PHESPV0795 ERR1439631 PHESPV0842 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439631 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439631 96cad4badf5782048c4322505bf13e75;7a9b173575db47ec94c895e5ac98d813 1313 199421561 b8bd9719a522ef313ee260c8331ca69f;af7057a86dae1955af02ce39e9750313 SAMEA4023900 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439631/ERR1439631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439631/ERR1439631_2.fastq.gz 2138778 WGS PHESPV0842 RANDOM 143905206;143133659 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fe18afc5f95b2a1d5c6dc00bdb34266b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439631/ERR1439631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439631/ERR1439631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439631/PHESPV0842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439631/PHESPV0842.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439631/ERR1439631_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439631/ERR1439631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439631/PHESPV0842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439631/PHESPV0842.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138366822;137597510 ERS1195010 ERX1510009 GENOMIC 414927439 2016-06-10 PHESPV0842 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439631/PHESPV0842.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439631/PHESPV0842.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439631 PHESPV0842 ERR1439685 PHESPV0896 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439685 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439685 57b67543a09d45637eb56d91e76f5322;14f587fcb82c70ec3f81f709c4fcbbc4 1313 181530275 1e1203ed5c947492be981d98fcfb1ac7;ebb383b244a0519e04386ece8d99373f SAMEA4023954 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439685/ERR1439685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439685/ERR1439685_2.fastq.gz 2048056 WGS PHESPV0896 RANDOM 132041036;132080595 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 716178ad7b86a279ce174e3a9d71d794 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439685/ERR1439685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439685/ERR1439685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439685/PHESPV0896.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439685/PHESPV0896.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439685/ERR1439685_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439685/ERR1439685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439685/PHESPV0896.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439685/PHESPV0896.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126743024;126806859 ERS1195064 ERX1510063 GENOMIC 397071080 2016-06-10 PHESPV0896 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439685/PHESPV0896.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439685/PHESPV0896.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439685 PHESPV0896 ERR1439682 PHESPV0893 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1439682 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439682 d4bc4e2112ea7dcee8283204bdbcfe34;d088667b5631e0722df385f40d83fa9a 1313 168363911 bed4b126ca46c91300e0f0e4f12805da;984b46dc1005f75ffc3b3b832ec663af SAMEA4023951 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439682/ERR1439682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439682/ERR1439682_2.fastq.gz 1890120 WGS PHESPV0893 RANDOM 122628834;122670138 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4364fa3c0e5ba35e93e4b371c749fa80 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439682/ERR1439682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1439682/ERR1439682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439682/PHESPV0893.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439682/PHESPV0893.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439682/ERR1439682_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1439682/ERR1439682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439682/PHESPV0893.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439682/PHESPV0893.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117697354;117765413 ERS1195061 ERX1510060 GENOMIC 368809094 2016-06-10 PHESPV0893 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439682/PHESPV0893.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439682/PHESPV0893.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1439682 PHESPV0893 ERR1439663 PHESPV0874 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439663 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439663 65ca99ebe406b0aedd3f62c21fe72edf;5988493d3c10944820db601dc97f44f1 1313 162895890 8db1d7439fe438e37df309722bc91ffc;5d2fc44f5254d8e39b3d6bb054f38807 SAMEA4023932 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439663/ERR1439663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439663/ERR1439663_2.fastq.gz 1840359 WGS PHESPV0874 RANDOM 118032348;119098283 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 55f3b81e6fc9d83b45b063d592329b5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439663/ERR1439663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439663/ERR1439663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439663/PHESPV0874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439663/PHESPV0874.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439663/ERR1439663_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439663/ERR1439663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439663/PHESPV0874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439663/PHESPV0874.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113195300;114282204 ERS1195042 ERX1510041 GENOMIC 355065455 2016-06-10 PHESPV0874 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439663/PHESPV0874.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439663/PHESPV0874.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439663 PHESPV0874 ERR1439676 PHESPV0887 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439676 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439676 baaf81d27ccddf19be6de5a47505bb9a;65e35f44fe86cad3d5aa7f962294be7c 1313 182829674 bdc684dc49357c6fca75a453be621417;95f7621eb4d04a244bcd0f52a8bbc575 SAMEA4023945 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439676/ERR1439676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439676/ERR1439676_2.fastq.gz 2058480 WGS PHESPV0887 RANDOM 132360213;133253174 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a34879a2a004dd857a9d2ffe9a009d9f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439676/ERR1439676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439676/ERR1439676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439676/PHESPV0887.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439676/PHESPV0887.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439676/ERR1439676_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439676/ERR1439676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439676/PHESPV0887.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439676/PHESPV0887.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126973305;127889431 ERS1195055 ERX1510054 GENOMIC 397518859 2016-06-10 PHESPV0887 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439676/PHESPV0887.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439676/PHESPV0887.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439676 PHESPV0887 ERR1439706 PHESPV0917 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439706 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439706 721bde3b3f640fb2b34e91b8c11f665b;1806a99d2a4a0e72afa04b36b76d8e8f 1313 210361122 8c1b0d80b00cf0e7f6ceae81a62ee9b4;7d76f751cf2c69caf5f10c6951dd3c4c SAMEA4023975 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439706/ERR1439706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439706/ERR1439706_2.fastq.gz 2344224 WGS PHESPV0917 RANDOM 150572703;153804425 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 00e2f0c5c990dcb9acdc306cff361ccc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439706/ERR1439706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439706/ERR1439706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439706/PHESPV0917.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439706/PHESPV0917.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439706/ERR1439706_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439706/ERR1439706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439706/PHESPV0917.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439706/PHESPV0917.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 144650056;147886130 ERS1195085 ERX1510084 GENOMIC 453793078 2016-06-10 PHESPV0917 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439706/PHESPV0917.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439706/PHESPV0917.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439706 PHESPV0917 ERR1439710 PHESPV0921 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439710 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439710 f1b5d5770a43c249a987c74b7e89fcfc;d7818510d80cf8d0a3f0f40b955a3751 1313 157722631 2b80f092546fba618e55f948b57a1a0e;65fa8c1e4f49c901bda5e05d4474f9b2 SAMEA4023979 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439710/ERR1439710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439710/ERR1439710_2.fastq.gz 1764134 WGS PHESPV0921 RANDOM 114442699;114704028 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6b7f71c5cf8f7de86d0b15f7b9a116ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439710/ERR1439710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439710/ERR1439710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439710/PHESPV0921.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439710/PHESPV0921.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439710/ERR1439710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439710/ERR1439710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439710/PHESPV0921.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439710/PHESPV0921.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109820125;110105510 ERS1195089 ERX1510088 GENOMIC 340831705 2016-06-10 PHESPV0921 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439710/PHESPV0921.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439710/PHESPV0921.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439710 PHESPV0921 ERR1439770 PHESPV0981 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439770 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439770 2402e55ba138b543155f47f196c7f302;2ebacab6bcc2b44f2f08136a1a2d3c52 1313 168987999 90aa4038f58a0e4319f06fee1e765307;ddfaabf13d09d37ea3488a0cd9a78a6a SAMEA4024039 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439770/ERR1439770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439770/ERR1439770_2.fastq.gz 1847603 WGS PHESPV0981 RANDOM 120450161;123679924 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a6e9c1dccb1da3217e52d1962f4a3a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439770/ERR1439770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439770/ERR1439770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439770/PHESPV0981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439770/PHESPV0981.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439770/ERR1439770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439770/ERR1439770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439770/PHESPV0981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439770/PHESPV0981.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115554293;118773137 ERS1195149 ERX1510148 GENOMIC 356918011 2016-06-10 PHESPV0981 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439770/PHESPV0981.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439770/PHESPV0981.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439770 PHESPV0981 ERR1439786 PHESPV0997 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1439786 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439786 2ab63f01a06d6c24097d721373dd8d64;435beb6847b7d45f6b82a74d4982136e 1313 150373891 8661fe76414566099fe7e954c80f5c22;0071a96505770ea6c7be9ce29d009d0b SAMEA4024055 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439786/ERR1439786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439786/ERR1439786_2.fastq.gz 1662159 WGS PHESPV0997 RANDOM 109131061;109130890 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6248938e4d69a112afaa196d643c53b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439786/ERR1439786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1439786/ERR1439786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439786/PHESPV0997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439786/PHESPV0997.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439786/ERR1439786_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1439786/ERR1439786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439786/PHESPV0997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439786/PHESPV0997.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104791491;104812397 ERS1195165 ERX1510164 GENOMIC 322830644 2016-06-10 PHESPV0997 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439786/PHESPV0997.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439786/PHESPV0997.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1439786 PHESPV0997 ERR1439711 PHESPV0922 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439711 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439711 85ba2858e6264e358e0039a4c8201fff;9b7e57bc93f9a5ba58a51b450a0eb94e 1313 236003590 92d64becc457bd6d907194a76d246cb1;ff8270f57d06a7bd7dbec56189558396 SAMEA4023980 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439711/ERR1439711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439711/ERR1439711_2.fastq.gz 2698961 WGS PHESPV0922 RANDOM 170674835;171434086 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 211649d7e157c9f91addf195dfd1d40b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439711/ERR1439711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439711/ERR1439711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439711/PHESPV0922.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439711/PHESPV0922.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439711/ERR1439711_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439711/ERR1439711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439711/PHESPV0922.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439711/PHESPV0922.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 163821326;164593757 ERS1195090 ERX1510089 GENOMIC 512819717 2016-06-10 PHESPV0922 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439711/PHESPV0922.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439711/PHESPV0922.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439711 PHESPV0922 ERR1439813 PHESPV1024 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439813 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439813 6f0bb547f94d2b3a815244298ea67abc;972aa0e33cf267667a011c1d51c7f990 1313 167108688 a795a2f7c9720014973e8e18e51219b5;5b63dc40fde83b9ed45f244e8ba2485d SAMEA4024082 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439813/ERR1439813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439813/ERR1439813_2.fastq.gz 1838610 WGS PHESPV1024 RANDOM 120877271;121065635 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b5cfd4c396c60ea1d96e391a57da8a05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439813/ERR1439813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439813/ERR1439813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439813/PHESPV1024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439813/PHESPV1024.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439813/ERR1439813_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439813/ERR1439813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439813/PHESPV1024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439813/PHESPV1024.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116058394;116263140 ERS1195192 ERX1510191 GENOMIC 355280518 2016-06-10 PHESPV1024 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439813/PHESPV1024.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439813/PHESPV1024.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439813 PHESPV1024 ERR1439817 PHESPV1028 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439817 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439817 077c85f13578a629b84a19e5cdcbd591;c3dfec326162fa8be252a8536125bfdf 1313 193347115 162fe48dae11945e9fcfcedab7e8eae3;eaaec4ce02251d7bf988b4d2639d1e65 SAMEA4024086 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439817/ERR1439817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439817/ERR1439817_2.fastq.gz 2205101 WGS PHESPV1028 RANDOM 140382856;140469615 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1f48f3ebe508f28729be1dc3f02733c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439817/ERR1439817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439817/ERR1439817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439817/PHESPV1028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439817/PHESPV1028.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439817/ERR1439817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439817/ERR1439817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439817/PHESPV1028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439817/PHESPV1028.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 134690664;134802761 ERS1195196 ERX1510195 GENOMIC 421295466 2016-06-10 PHESPV1028 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439817/PHESPV1028.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439817/PHESPV1028.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439817 PHESPV1028 ERR1439859 PHESPV1070 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439859 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439859 438fc5ff3cec32a83c0486ae198cff11;ea3ed286ecbbcb1f1fdc63d73e6c860f 1313 69615752 0cefdf147ce20af8ca6f1a2356810fc9;3d89ca783633b2f54231f2008de6e532 SAMEA4024128 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439859/ERR1439859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439859/ERR1439859_2.fastq.gz 760831 WGS PHESPV1070 RANDOM 50275622;50666923 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 88e445bd21f143fc7e1f16b102e63500 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439859/ERR1439859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439859/ERR1439859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439859/PHESPV1070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439859/PHESPV1070.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439859/ERR1439859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439859/ERR1439859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439859/PHESPV1070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439859/PHESPV1070.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 48353082;48750459 ERS1195238 ERX1510237 GENOMIC 147973989 2016-06-10 PHESPV1070 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439859/PHESPV1070.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439859/PHESPV1070.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439859 PHESPV1070 ERR1439977 PHESPV1188 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439977 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439977 c1814e50f33ce2415844b8cde3ad1532;8c52b9c6e5664f40a4e6b7bd1c9db936 1313 125542664 a9bd5c641abdff1656d91bdd76cf3d29;43c4362ca5675682fa8bf2c9ac7d7fe1 SAMEA4024246 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439977/ERR1439977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439977/ERR1439977_2.fastq.gz 1434748 WGS PHESPV1188 RANDOM 83030749;87174050 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline df5c44fe3fdd4704febfaf1ab302b0fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439977/ERR1439977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439977/ERR1439977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439977/PHESPV1188.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439977/PHESPV1188.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439977/ERR1439977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439977/ERR1439977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439977/PHESPV1188.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439977/PHESPV1188.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87820177;91884771 ERS1195356 ERX1510355 GENOMIC 284824476 2016-06-10 PHESPV1188 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439977/PHESPV1188.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439977/PHESPV1188.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439977 PHESPV1188 ERR1440034 PHESPV1245 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440034 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440034 47c9ae0e2b2f0dd469f6d1533c6298a4;b2be2a80cf79c25dda311820d5d358eb 1313 122915296 2b9d89e02a08a9b07d5321d62b0599f5;60b7ec0541da73123991abf6c1d98943 SAMEA4024303 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440034/ERR1440034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440034/ERR1440034_2.fastq.gz 1401917 WGS PHESPV1245 RANDOM 81776723;84734756 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a5cabf842576c3f24340ad4feb1941cf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440034/ERR1440034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440034/ERR1440034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440034/PHESPV1245.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440034/PHESPV1245.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440034/ERR1440034_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440034/ERR1440034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440034/PHESPV1245.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440034/PHESPV1245.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86440009;89370755 ERS1195413 ERX1510412 GENOMIC 278410178 2016-06-10 PHESPV1245 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440034/PHESPV1245.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440034/PHESPV1245.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440034 PHESPV1245 ERR1440209 PHESPV1423 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440209 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440209 dbc7be44ead060e80154848ed2503566;a1f6f25c9bfea72b18319a4d30f02802 1313 156893203 ebbe0324eef6deb198ba7609245fc1bb;7cddf8e590f9a8447cc7a1c80b84548d SAMEA4024478 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440209/ERR1440209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440209/ERR1440209_2.fastq.gz 1703941 WGS PHESPV1423 RANDOM 112663340;112793415 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d139230fa2438c470c2b3ec463d19584 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440209/ERR1440209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440209/ERR1440209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440209/PHESPV1423.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440209/PHESPV1423.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440209/ERR1440209_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440209/ERR1440209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440209/PHESPV1423.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440209/PHESPV1423.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108141085;108302818 ERS1195588 ERX1510587 GENOMIC 322167030 2016-06-10 PHESPV1423 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440209/PHESPV1423.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440209/PHESPV1423.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440209 PHESPV1423 ERR1440222 PHESPV1436 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440222 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440222 fb929df6e7a175ec0b3ecc872df64bce;f8797f326011e1a97fb93ba1fb513980 1313 148791107 60b02518f9d58beb69454de14f3ef4be;3e246928c08e19ddfa4e9259a4f8a313 SAMEA4024491 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440222/ERR1440222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440222/ERR1440222_2.fastq.gz 1758785 WGS PHESPV1436 RANDOM 98344716;104959459 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0bb9e6bb0043a8939f38da12d0e2d5cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440222/ERR1440222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440222/ERR1440222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440222/PHESPV1436.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440222/PHESPV1436.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440222/ERR1440222_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440222/ERR1440222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440222/PHESPV1436.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440222/PHESPV1436.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104013965;110531554 ERS1195601 ERX1510600 GENOMIC 348800911 2016-06-10 PHESPV1436 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440222/PHESPV1436.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440222/PHESPV1436.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440222 PHESPV1436 ERR1440246 PHESPV1461 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440246 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440246 c20e7f40b5e8f9131f3372a44d4f0fb3;06ad9e0c364809fe884d34ecbdb59e55 1313 162459913 5cb7896c767759bb5883d574b9d74007;a2838108d5e040d2f3e6ad432427bd79 SAMEA4024515 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440246/ERR1440246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440246/ERR1440246_2.fastq.gz 1763335 WGS PHESPV1461 RANDOM 116513601;116954360 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 565327de51ff3840571ec69cbb750d19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440246/ERR1440246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440246/ERR1440246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440246/PHESPV1461.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440246/PHESPV1461.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440246/ERR1440246_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440246/ERR1440246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440246/PHESPV1461.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440246/PHESPV1461.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 111866471;112332245 ERS1195625 ERX1510624 GENOMIC 332638733 2016-06-10 PHESPV1461 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440246/PHESPV1461.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440246/PHESPV1461.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440246 PHESPV1461 ERR1440294 PHESPV1509 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440294 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440294 faf640db17ed5993b56212e98e7fd541;7d5af0e8a71fa93440e71aa071300e2e 1313 175640031 d0f21b1624f1b54c9ba7c35b2fca80b8;939d6b9af589aec54e7175044880149d SAMEA4024563 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440294/ERR1440294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440294/ERR1440294_2.fastq.gz 1917534 WGS PHESPV1509 RANDOM 117837816;119449550 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4be1b0e4aefe6e227b37c3adda10a0a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440294/ERR1440294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440294/ERR1440294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440294/PHESPV1509.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440294/PHESPV1509.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440294/ERR1440294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440294/ERR1440294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440294/PHESPV1509.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440294/PHESPV1509.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124007580;125595879 ERS1195673 ERX1510672 GENOMIC 379473456 2016-06-10 PHESPV1509 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440294/PHESPV1509.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440294/PHESPV1509.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440294 PHESPV1509 ERR1440295 PHESPV1510 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440295 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440295 7503a553fd40eb781d0f872075bf0dd9;fb44c9ebee54a8db21ad543f204b9ee9 1313 151217411 b443d423f8bfb16d7b473f2a4c149438;4405d30097929356609bbec44c069008 SAMEA4024564 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440295/ERR1440295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440295/ERR1440295_2.fastq.gz 1820506 WGS PHESPV1510 RANDOM 102075966;104986191 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3c895330fc324eb75d93c275cecb73f9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440295/ERR1440295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440295/ERR1440295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440295/PHESPV1510.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440295/PHESPV1510.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440295/ERR1440295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440295/ERR1440295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440295/PHESPV1510.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440295/PHESPV1510.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 107955249;110876055 ERS1195674 ERX1510673 GENOMIC 361675862 2016-06-10 PHESPV1510 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440295/PHESPV1510.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440295/PHESPV1510.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440295 PHESPV1510 ERR1440303 PHESPV1518 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440303 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440303 e87e4d016b07f0542ca48988a4015a37;19609595db99f6e5287e7dd3e681ab84 1313 131401687 142803985e5a2d341193e71850565c55;94f8c3230b2d85c6c8d74ec9df615b09 SAMEA4024572 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440303/ERR1440303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440303/ERR1440303_2.fastq.gz 1408624 WGS PHESPV1518 RANDOM 94507810;94443058 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d13b9a3dabb390910c8936ddcb0c73f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440303/ERR1440303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440303/ERR1440303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440303/PHESPV1518.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440303/PHESPV1518.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440303/ERR1440303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440303/ERR1440303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440303/PHESPV1518.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440303/PHESPV1518.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90928202;90892362 ERS1195682 ERX1510681 GENOMIC 270750746 2016-06-10 PHESPV1518 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440303/PHESPV1518.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440303/PHESPV1518.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440303 PHESPV1518 ERR1440309 PHESPV1524 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440309 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440309 c65bb5f541ef2dff20f895ad40d4be8a;5118423d47f6a4f7413e274ddf6df561 1313 158439084 1c7871a62451a65d440f41cb005d7a1f;a066eb4854aa4ea5c41549b763b3b867 SAMEA4024578 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440309/ERR1440309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440309/ERR1440309_2.fastq.gz 1860495 WGS PHESPV1524 RANDOM 107114634;108918633 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e35f55814d1bd346dfced3e4edd52879 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440309/ERR1440309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440309/ERR1440309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440309/PHESPV1524.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440309/PHESPV1524.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440309/ERR1440309_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440309/ERR1440309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440309/PHESPV1524.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440309/PHESPV1524.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113111264;114933689 ERS1195688 ERX1510687 GENOMIC 369755819 2016-06-10 PHESPV1524 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440309/PHESPV1524.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440309/PHESPV1524.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440309 PHESPV1524 ERR1440305 PHESPV1520 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440305 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440305 9cbb576bf0e994840e66e52912a9e82b;96610bba3036f3267fe37444cfceace1 1313 99975172 3291e459b0193529d4263fee5867621d;27f72b9f9031985271ca2c54c5fe636b SAMEA4024574 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440305/ERR1440305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440305/ERR1440305_2.fastq.gz 1058943 WGS PHESPV1520 RANDOM 71203488;72286545 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e5aab09717846df0070efd6e945b556f ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440305/ERR1440305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440305/ERR1440305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440305/PHESPV1520.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440305/PHESPV1520.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440305/ERR1440305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440305/ERR1440305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440305/PHESPV1520.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440305/PHESPV1520.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68526648;69623421 ERS1195684 ERX1510683 GENOMIC 203113273 2016-06-10 PHESPV1520 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440305/PHESPV1520.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440305/PHESPV1520.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440305 PHESPV1520 ERR1440360 PHESPV1575 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/000/ERR1440360 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440360 3417bcd6816d37269aaaf8f52a52fd64;09ce0494e6826fca0650088dc80be43d 1313 178963623 2b2804656e9a9de501481f851b01e654;12fa39aa07bfa2518814ec71fdcb66bc SAMEA4024629 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440360/ERR1440360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440360/ERR1440360_2.fastq.gz 2104672 WGS PHESPV1575 RANDOM 129773816;133926525 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 78c18a84ad750e8b43da3e2cd25d1206 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440360/ERR1440360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/000/ERR1440360/ERR1440360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440360/PHESPV1575.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440360/PHESPV1575.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440360/ERR1440360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/000/ERR1440360/ERR1440360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440360/PHESPV1575.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440360/PHESPV1575.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124461206;128587462 ERS1195739 ERX1510738 GENOMIC 415774648 2016-06-10 PHESPV1575 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440360/PHESPV1575.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440360/PHESPV1575.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/000/ERR1440360 PHESPV1575 ERR1440364 PHESPV1579 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440364 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440364 228230246d88839e4a52e9dc39ab4509;51122b234eaeeb1732d0bc817a1baa35 1313 159862399 da3975f7a4bc84dc1ecc35a9bd12d3b7;e4b4c033f90bde74392b437dc7c55442 SAMEA4024633 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440364/ERR1440364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440364/ERR1440364_2.fastq.gz 1853656 WGS PHESPV1579 RANDOM 114774610;120415672 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 908c30265b502ee47fbcb8624950baa2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440364/ERR1440364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440364/ERR1440364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440364/PHESPV1579.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440364/PHESPV1579.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440364/ERR1440364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440364/ERR1440364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440364/PHESPV1579.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440364/PHESPV1579.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 110046253;115635325 ERS1195743 ERX1510742 GENOMIC 366054694 2016-06-10 PHESPV1579 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440364/PHESPV1579.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440364/PHESPV1579.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440364 PHESPV1579 ERR1440386 PHESPV1601 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440386 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440386 9117795fa76cb07fcc4a1415b49ecf40;6fd1dc2644b5c3bffb24624845501f16 1313 193589356 d771a348abdd75cf6a516fe7fcb0158b;5aa13f2d9d9d3ad9346537e835a37d18 SAMEA4024655 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440386/ERR1440386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440386/ERR1440386_2.fastq.gz 2219230 WGS PHESPV1601 RANDOM 136187716;146652051 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7640930806c9de53611facb36097cca9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440386/ERR1440386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440386/ERR1440386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440386/PHESPV1601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440386/PHESPV1601.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440386/ERR1440386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440386/ERR1440386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440386/PHESPV1601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440386/PHESPV1601.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 130617574;141015286 ERS1195765 ERX1510764 GENOMIC 436509905 2016-06-10 PHESPV1601 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440386/PHESPV1601.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440386/PHESPV1601.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440386 PHESPV1601 ERR1440622 PHESPV1837 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/002/ERR1440622 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440622 e5d58301df2b5c3cd3b97ce781369194;a203765fd1a4132e2fc836f5f7f931e3 1313 69470154 d6f93bf3fb088026dc9443818fc6ec18;53885851d58297f86803ed521cd93c8a SAMEA4024891 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440622/ERR1440622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440622/ERR1440622_2.fastq.gz 788950 WGS PHESPV1837 RANDOM 49453348;51841188 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 732cebec18a84e66d22bc6b7ee5e02e7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440622/ERR1440622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/002/ERR1440622/ERR1440622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440622/PHESPV1837.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440622/PHESPV1837.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440622/ERR1440622_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/002/ERR1440622/ERR1440622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440622/PHESPV1837.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440622/PHESPV1837.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 47486127;49834312 ERS1196001 ERX1511000 GENOMIC 153697985 2016-06-10 PHESPV1837 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440622/PHESPV1837.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440622/PHESPV1837.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/002/ERR1440622 PHESPV1837 ERR1440606 PHESPV1821 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440606 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440606 c2efc6b06d55dbe78d06385462741d59;eb4a154b565967aa6427582652bee488 1313 107877763 acc488208845760b3456b6fa0585b9b3;00e93e883e7936de88e37ec877711d7b SAMEA4024875 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440606/ERR1440606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440606/ERR1440606_2.fastq.gz 1226079 WGS PHESPV1821 RANDOM 76131870;80568728 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline feafcd20ca9f2e52f5af5407d0fc44bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440606/ERR1440606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440606/ERR1440606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440606/PHESPV1821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440606/PHESPV1821.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440606/ERR1440606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440606/ERR1440606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440606/PHESPV1821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440606/PHESPV1821.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 73058737;77445490 ERS1195985 ERX1510984 GENOMIC 237407245 2016-06-10 PHESPV1821 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440606/PHESPV1821.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440606/PHESPV1821.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440606 PHESPV1821 ERR1440609 PHESPV1824 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440609 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440609 2454899bdd04e3712a1e2e1465578c74;f14ccc4c372e493c06eadd73962ccb20 1313 138341465 b54a41c6ed3b119e2e1c216d6300ad86;89f4512924f2e0aa41a3f756f82a4305 SAMEA4024878 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440609/ERR1440609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440609/ERR1440609_2.fastq.gz 1581561 WGS PHESPV1824 RANDOM 99009549;102746439 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7fdbd71861b3242e62dcbe4520a2888d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440609/ERR1440609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440609/ERR1440609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440609/PHESPV1824.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440609/PHESPV1824.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440609/ERR1440609_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440609/ERR1440609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440609/PHESPV1824.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440609/PHESPV1824.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94948005;98632475 ERS1195988 ERX1510987 GENOMIC 309055762 2016-06-10 PHESPV1824 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440609/PHESPV1824.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440609/PHESPV1824.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440609 PHESPV1824 ERR1440393 PHESPV1608 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440393 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440393 5ba5ecca89f177e7a953879599110030;90795c088430d529635c67e478e4f234 1313 145311274 3ba8fedd7aff533fbd50d258906c2181;f6a8c02ce0c3416e324b9683b738f79a SAMEA4024662 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440393/ERR1440393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440393/ERR1440393_2.fastq.gz 1592840 WGS PHESPV1608 RANDOM 103996697;106687902 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5904d344e7414d7434d64258b5ba0144 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440393/ERR1440393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440393/ERR1440393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440393/PHESPV1608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440393/PHESPV1608.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440393/ERR1440393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440393/ERR1440393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440393/PHESPV1608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440393/PHESPV1608.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99932733;102605070 ERS1195772 ERX1510771 GENOMIC 310425858 2016-06-10 PHESPV1608 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440393/PHESPV1608.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440393/PHESPV1608.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440393 PHESPV1608 ERR1440697 PHESPV1912 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440697 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440697 c65c747b0aabe7e66ee9b7bfd1c7a4a0;0441c0d730f74b5bcfbbc0ae30fe66d8 1313 145310132 f15720badf6cf12a29e97427c59fa13f;bca1826506bf832e051b4bee426e42a7 SAMEA4024966 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440697/ERR1440697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440697/ERR1440697_2.fastq.gz 1556758 WGS PHESPV1912 RANDOM 103128572;104059916 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8640b06b443174eae759f4e162014f7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440697/ERR1440697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440697/ERR1440697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440697/PHESPV1912.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440697/PHESPV1912.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440697/ERR1440697_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440697/ERR1440697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440697/PHESPV1912.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440697/PHESPV1912.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99044213;99971087 ERS1196076 ERX1511075 GENOMIC 303271658 2016-06-10 PHESPV1912 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440697/PHESPV1912.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440697/PHESPV1912.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440697 PHESPV1912 ERR1440698 PHESPV1913 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440698 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440698 8f9754f40ee4d39ad9b99773d58cd321;b8347cb15bee12c61ac18db12ff7f556 1313 129480166 8c3c27d8f74abec5690e0bc70826baab;00a07605ec59eaed15cb2a8ed992da68 SAMEA4024967 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440698/ERR1440698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440698/ERR1440698_2.fastq.gz 1374930 WGS PHESPV1913 RANDOM 91384641;92860450 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 609739f5c2a3059a7e853cc5ce2a0172 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440698/ERR1440698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440698/ERR1440698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440698/PHESPV1913.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440698/PHESPV1913.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440698/ERR1440698_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440698/ERR1440698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440698/PHESPV1913.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440698/PHESPV1913.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87796525;89262325 ERS1196077 ERX1511076 GENOMIC 267820831 2016-06-10 PHESPV1913 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440698/PHESPV1913.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440698/PHESPV1913.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440698 PHESPV1913 ERR1440699 PHESPV1914 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/009/ERR1440699 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440699 57849db9f4bcb805a8f86c99521e95b9;68f879ff4a753bf6701dd21948a91334 1313 152110519 27895825dbd309c412b3d4364e34e244;214fa3598b41b25621145cdb5d86ce63 SAMEA4024968 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440699/ERR1440699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440699/ERR1440699_2.fastq.gz 1631234 WGS PHESPV1914 RANDOM 108387511;108542214 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6cab42448ab9dc601f4f9b24c0ab4d81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440699/ERR1440699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/009/ERR1440699/ERR1440699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440699/PHESPV1914.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440699/PHESPV1914.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440699/ERR1440699_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/009/ERR1440699/ERR1440699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440699/PHESPV1914.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440699/PHESPV1914.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104101953;104252632 ERS1196078 ERX1511077 GENOMIC 317628163 2016-06-10 PHESPV1914 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440699/PHESPV1914.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440699/PHESPV1914.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/009/ERR1440699 PHESPV1914 ERR1438792 PHESPV0002 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438792 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438792 ba342a8c4605c7e2e55ca2a4bb322d13;08be8a56f48bd6307dd94f02dbaecbac 1313 134230749 045ffe5bdbbce53525787616548c9696;87d67635c9c4671c2ddf742732e94aba SAMEA4023061 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438792/ERR1438792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438792/ERR1438792_2.fastq.gz 1694227 WGS PHESPV0002 RANDOM 92598454;92489608 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 65feec1b345018ccb01a4bf5663b6ddf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438792/ERR1438792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438792/ERR1438792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438792/PHESPV0002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438792/PHESPV0002.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438792/ERR1438792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438792/ERR1438792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438792/PHESPV0002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438792/PHESPV0002.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98171357;98023684 ERS1194171 ERX1509170 GENOMIC 332467835 2016-06-10 PHESPV0002 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438792/PHESPV0002.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438792/PHESPV0002.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438792 PHESPV0002 ERR1438800 PHESPV0010 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438800 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438800 17bbe15d990d2512de16be3859cdd24e;bd7341291cc05439aa22126e726cf449 1313 109245047 976e8c4fedc95b25a34e25d3e2b9f6c6;f607b2be157dfa54912b8e6c91515b17 SAMEA4023069 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438800/ERR1438800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438800/ERR1438800_2.fastq.gz 1335990 WGS PHESPV0010 RANDOM 74485086;74891552 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 19b6c69abab02e25723583d598338e63 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438800/ERR1438800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438800/ERR1438800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438800/PHESPV0010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438800/PHESPV0010.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438800/ERR1438800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438800/ERR1438800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438800/PHESPV0010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438800/PHESPV0010.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78942707;79367385 ERS1194179 ERX1509178 GENOMIC 260737102 2016-06-10 PHESPV0010 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438800/PHESPV0010.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438800/PHESPV0010.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438800 PHESPV0010 ERR1439005 PHESPV0216 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439005 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439005 0c763a8d6f868e4bc2e80da7376afc46;bc3e0a6a3bd4c28b5ba06340467c5c89 1313 305324984 d742ffb9f765a8ce3b8cf8e3d53301c1;fb1ac73bf03b56a183fcb998db9b6760 SAMEA4023274 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439005/ERR1439005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439005/ERR1439005_2.fastq.gz 2420270 WGS PHESPV0216 RANDOM 189038002;192024945 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3730c34278b4e5f393c09acd112769c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439005/ERR1439005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439005/ERR1439005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439005/PHESPV0216.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439005/PHESPV0216.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439005/ERR1439005_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439005/ERR1439005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439005/PHESPV0216.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439005/PHESPV0216.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 196396996;199343587 ERS1194384 ERX1509383 GENOMIC 468415583 2016-06-10 PHESPV0216 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439005/PHESPV0216.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439005/PHESPV0216.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439005 PHESPV0216 ERR1439010 PHESPV0221 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439010 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439010 d911bf0888c3911c04421deb91a12b91;23416cb9a4a5c18eae4612e3b3c9e817 1313 404508506 970527b995835a80de6fc460f62ddcfb;70af8dc3444ece43284108b0061d4258 SAMEA4023279 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439010/ERR1439010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439010/ERR1439010_2.fastq.gz 3172442 WGS PHESPV0221 RANDOM 265548924;267367636 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d6e178c8772cc0b7e71ac6f3051b256f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439010/ERR1439010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439010/ERR1439010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439010/PHESPV0221.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439010/PHESPV0221.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439010/ERR1439010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439010/ERR1439010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439010/PHESPV0221.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439010/PHESPV0221.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 257244144;259034966 ERS1194389 ERX1509388 GENOMIC 614732890 2016-06-10 PHESPV0221 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439010/PHESPV0221.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439010/PHESPV0221.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439010 PHESPV0221 ERR1439015 PHESPV0226 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439015 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439015 80e3b3aa8fb01224c3d93ee610bedf06;78a19af7a7d1691fe78ddd6a64038f8f 1313 311318772 fecb3003b29b01b2ebaaf3cbb1e094d4;854c60eafd2b1554899410bd775bd2c6 SAMEA4023284 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439015/ERR1439015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439015/ERR1439015_2.fastq.gz 2435285 WGS PHESPV0226 RANDOM 203718080;206649129 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5accb88f2e869fe81d99f9c39033c192 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439015/ERR1439015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439015/ERR1439015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439015/PHESPV0226.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439015/PHESPV0226.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439015/ERR1439015_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439015/ERR1439015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439015/PHESPV0226.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439015/PHESPV0226.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 197545805;200460107 ERS1194394 ERX1509393 GENOMIC 471061094 2016-06-10 PHESPV0226 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439015/PHESPV0226.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439015/PHESPV0226.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439015 PHESPV0226 ERR1439020 PHESPV0231 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439020 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439020 22ce57ecf102ebb94d30cf34d1b16ea9;d9c94d6e8794994c729153281ed93897 1313 283610845 510f58b85c2902bbd0bc8ae9e53986ff;7fcb139cfed27a127158a42dab298dab SAMEA4023289 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439020/ERR1439020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439020/ERR1439020_2.fastq.gz 2241296 WGS PHESPV0231 RANDOM 173578143;180089834 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f769eaec1ff93538f1b32ecb5047a2bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439020/ERR1439020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439020/ERR1439020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439020/PHESPV0231.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439020/PHESPV0231.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439020/ERR1439020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439020/ERR1439020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439020/PHESPV0231.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439020/PHESPV0231.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 180519650;186951766 ERS1194399 ERX1509398 GENOMIC 432810638 2016-06-10 PHESPV0231 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439020/PHESPV0231.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439020/PHESPV0231.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439020 PHESPV0231 ERR1439021 PHESPV0232 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1439021 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439021 2fe0cf578dcffc4b2121a269c71f24f9;68bf05d8b7c383620340bde491edfd1b 1313 318568923 48c11acfa5f7ac113bf954034cb35edc;974e1c9e6fae6352545f549c8f54f0b7 SAMEA4023290 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439021/ERR1439021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439021/ERR1439021_2.fastq.gz 2517357 WGS PHESPV0232 RANDOM 195217104;202074181 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6aed9f2deb42acc62d94266f3447cdd ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439021/ERR1439021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1439021/ERR1439021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439021/PHESPV0232.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439021/PHESPV0232.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439021/ERR1439021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1439021/ERR1439021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439021/PHESPV0232.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439021/PHESPV0232.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 202844666;209606163 ERS1194400 ERX1509399 GENOMIC 486045296 2016-06-10 PHESPV0232 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439021/PHESPV0232.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439021/PHESPV0232.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1439021 PHESPV0232 ERR1439027 PHESPV0238 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1439027 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439027 0af94375043b5c9712b91105c0c1f0a2;94fbfb9dd00deb6d50298cef096f4b5a 1313 393910661 ec349b644d5b77da55c5631de63edb78;0c8599ffb8eee92122f2fe962b17b3d2 SAMEA4023296 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439027/ERR1439027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439027/ERR1439027_2.fastq.gz 3120159 WGS PHESPV0238 RANDOM 243405483;247758251 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4021970b832f7d49636f278b77b91604 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439027/ERR1439027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1439027/ERR1439027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439027/PHESPV0238.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439027/PHESPV0238.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439027/ERR1439027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1439027/ERR1439027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439027/PHESPV0238.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439027/PHESPV0238.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 252675015;256969677 ERS1194406 ERX1509405 GENOMIC 603135655 2016-06-10 PHESPV0238 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439027/PHESPV0238.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439027/PHESPV0238.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1439027 PHESPV0238 ERR1439039 PHESPV0250 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439039 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439039 e61a50d881ce994594e4e2671ee1e591;dd1e2c95dd9568fd8d58a77537bd26f5 1313 105718801 3431c45961bcbdc3e6e037321cf6045c;10110c87678c6d5eafe3e364744dbafb SAMEA4023308 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439039/ERR1439039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439039/ERR1439039_2.fastq.gz 1253686 WGS PHESPV0250 RANDOM 70658670;72985167 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2ec7d01e416ab63e0f1373847c3a5787 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439039/ERR1439039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439039/ERR1439039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439039/PHESPV0250.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439039/PHESPV0250.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439039/ERR1439039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439039/ERR1439039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439039/PHESPV0250.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439039/PHESPV0250.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74950036;77240194 ERS1194418 ERX1509417 GENOMIC 243444036 2016-06-10 PHESPV0250 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439039/PHESPV0250.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439039/PHESPV0250.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439039 PHESPV0250 ERR1439059 PHESPV0270 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1439059 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439059 23cfefff38a568553bb2df474da77cd1;e5c8cf7af937c9194bf6505fff5cbc03 1313 139407351 ec4b7ff4e29d795d169ba769785e5e65;4f47b07c3f23c4ac478461c90b1850af SAMEA4023328 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439059/ERR1439059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439059/ERR1439059_2.fastq.gz 1684810 WGS PHESPV0270 RANDOM 94087706;96256915 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d6db43785b4b537b6b678a21533c442e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439059/ERR1439059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1439059/ERR1439059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439059/PHESPV0270.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439059/PHESPV0270.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439059/ERR1439059_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1439059/ERR1439059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439059/PHESPV0270.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439059/PHESPV0270.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99650351;101820490 ERS1194438 ERX1509437 GENOMIC 328426231 2016-06-10 PHESPV0270 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439059/PHESPV0270.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439059/PHESPV0270.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1439059 PHESPV0270 ERR1439118 PHESPV0329 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1439118 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439118 1407304879498c35bf9c08ba84a40f61;91f55047bd2540c89d78c6762b68676e 1313 140645507 3d994395840edcff14586042ea718571;cfacb71ff89a608b76d61d67df38528e SAMEA4023387 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439118/ERR1439118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439118/ERR1439118_2.fastq.gz 1182314 WGS PHESPV0329 RANDOM 85145469;89839394 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 15a85375889d7deb998e192a08b6ae72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439118/ERR1439118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1439118/ERR1439118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439118/PHESPV0329.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439118/PHESPV0329.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439118/ERR1439118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1439118/ERR1439118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439118/PHESPV0329.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439118/PHESPV0329.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89110689;93810407 ERS1194497 ERX1509496 GENOMIC 231381703 2016-06-10 PHESPV0329 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439118/PHESPV0329.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439118/PHESPV0329.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1439118 PHESPV0329 ERR1439330 PHESPV0541 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1439330 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439330 a2b38b094e62e47081d5862a84507941;be81fffd3832250826acbd3393f0d6ed 1313 211553696 595340e0d7440c8c79c64b0137e89e85;0c5d4f666b07cdc51da3abbe838be468 SAMEA4023599 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439330/ERR1439330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439330/ERR1439330_2.fastq.gz 2609665 WGS PHESPV0541 RANDOM 143202358;146731023 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a02daca69212365eead6b97e4f27e529 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439330/ERR1439330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1439330/ERR1439330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439330/PHESPV0541.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439330/PHESPV0541.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439330/ERR1439330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1439330/ERR1439330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439330/PHESPV0541.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439330/PHESPV0541.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 151270798;154750877 ERS1194709 ERX1509708 GENOMIC 509823998 2016-06-10 PHESPV0541 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439330/PHESPV0541.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439330/PHESPV0541.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1439330 PHESPV0541 ERR1440118 PHESPV1329 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440118 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440118 72985b9b16a8964a358d6dee8750a963;491aadc682022861a9c4ad56618d5751 1313 155151332 126db53c8debf4f1259c9a6a2aec4d4d;ec3cf9308f0485e366d80d4551ffb55d SAMEA4024387 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440118/ERR1440118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440118/ERR1440118_2.fastq.gz 1761654 WGS PHESPV1329 RANDOM 103349591;106748378 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e84a8fd246ae1577d189d7a03553aa8d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440118/ERR1440118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440118/ERR1440118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440118/PHESPV1329.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440118/PHESPV1329.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440118/ERR1440118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440118/ERR1440118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440118/PHESPV1329.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440118/PHESPV1329.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 109146996;112445693 ERS1195497 ERX1510496 GENOMIC 349797402 2016-06-10 PHESPV1329 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440118/PHESPV1329.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440118/PHESPV1329.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440118 PHESPV1329 ERR1440115 PHESPV1326 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440115 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440115 55a860228f3c1fa61fb918898577d1e8;983bc1615aa09489b74372efe7e136ee 1313 140109592 f57064c7bb60c5579e64354e1086d416;cab70aba722a8430fa2edd0c76ddeafe SAMEA4024384 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440115/ERR1440115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440115/ERR1440115_2.fastq.gz 1595637 WGS PHESPV1326 RANDOM 93157524;95193689 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0702422a383f545d43133a731ea718ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440115/ERR1440115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440115/ERR1440115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440115/PHESPV1326.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440115/PHESPV1326.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440115/ERR1440115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440115/ERR1440115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440115/PHESPV1326.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440115/PHESPV1326.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 98421174;100365231 ERS1195494 ERX1510493 GENOMIC 316684212 2016-06-10 PHESPV1326 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440115/PHESPV1326.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440115/PHESPV1326.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440115 PHESPV1326 ERR1439615 PHESPV0826 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1439615 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439615 b81988915e9d639d24e6e21df6d09fba;8d4e53b02536849ddf5607b05049d56d 1313 197506629 cd40d64d2efccf6355d025d3aeace32c;bacebadb2c83e30294c8395bb94ae02a SAMEA4023884 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439615/ERR1439615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439615/ERR1439615_2.fastq.gz 2147064 WGS PHESPV0826 RANDOM 131450641;133595563 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cf73b15eafb3a45bd6dfbe1c45593bc0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439615/ERR1439615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1439615/ERR1439615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439615/PHESPV0826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439615/PHESPV0826.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439615/ERR1439615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1439615/ERR1439615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439615/PHESPV0826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439615/PHESPV0826.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 138288635;140297407 ERS1194994 ERX1509993 GENOMIC 424939242 2016-06-10 PHESPV0826 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439615/PHESPV0826.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439615/PHESPV0826.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1439615 PHESPV0826 ERR1440078 PHESPV1289 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440078 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440078 c457a6403692bb817f4e94c69d58306a;135c6bd9b6ad336a1af4e3390d0f43fd 1313 158960664 7a032a69420b6da4647cdad278ad33ab;8fe1e016597c707993886f5469ec84bd SAMEA4024347 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440078/ERR1440078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440078/ERR1440078_2.fastq.gz 1751330 WGS PHESPV1289 RANDOM 107326500;107599142 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f1719f7e8918cee38b34dc057ea4360c ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440078/ERR1440078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440078/ERR1440078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440078/PHESPV1289.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440078/PHESPV1289.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440078/ERR1440078_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440078/ERR1440078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440078/PHESPV1289.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440078/PHESPV1289.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113084130;113309109 ERS1195457 ERX1510456 GENOMIC 346674381 2016-06-10 PHESPV1289 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440078/PHESPV1289.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440078/PHESPV1289.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440078 PHESPV1289 ERR1439563 PHESPV0774 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1439563 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439563 41b385008105700a4807c455539e1cff;06ab9de1ee1b5b522686d6ae10dc7bc1 1313 120725536 87a83e7c53362bd7990832ca22ec79c2;bd141600863e48112c300ecbfa5ffb23 SAMEA4023832 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439563/ERR1439563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439563/ERR1439563_2.fastq.gz 1506985 WGS PHESPV0774 RANDOM 82035114;84587267 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0af6bacec321bcb3162b3fb84ba1d616 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439563/ERR1439563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1439563/ERR1439563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439563/PHESPV0774.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439563/PHESPV0774.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439563/ERR1439563_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1439563/ERR1439563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439563/PHESPV0774.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1439563/PHESPV0774.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87030253;89612230 ERS1194942 ERX1509941 GENOMIC 300199444 2016-06-10 PHESPV0774 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439563/PHESPV0774.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1439563/PHESPV0774.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1439563 PHESPV0774 ERR1440353 PHESPV1568 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440353 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440353 d30f30e59993083beb5db355d937c4df;e9e10ae58f9b93042937aee7b7dd00f0 1313 280590652 d5318bbcbb9cc759ee51eee944204257;b3754594e1490ce12d1f019c42db6df9 SAMEA4024622 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440353/ERR1440353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440353/ERR1440353_2.fastq.gz 3108957 WGS PHESPV1568 RANDOM 184393482;192808257 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c4529243634cc42e1a996c7931a6c70d ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440353/ERR1440353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440353/ERR1440353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440353/PHESPV1568.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440353/PHESPV1568.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440353/ERR1440353_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440353/ERR1440353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440353/PHESPV1568.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440353/PHESPV1568.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 193738462;202063660 ERS1195732 ERX1510731 GENOMIC 614508911 2016-06-10 PHESPV1568 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440353/PHESPV1568.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440353/PHESPV1568.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440353 PHESPV1568 ERR1440528 PHESPV1743 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440528 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440528 a7efa2e474481e73953138a33d109366;1218d85b5929c2d434c67c3c0b0bd5b0 1313 182233635 fe5eb6c20adf9e26fe5b72a1214f5d9c;d59fe4852b8066fac12c493860c9a29c SAMEA4024797 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440528/ERR1440528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440528/ERR1440528_2.fastq.gz 1988920 WGS PHESPV1743 RANDOM 129285671;134981712 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e3f29f34f2ef9edd4d295885e3277d6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440528/ERR1440528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440528/ERR1440528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440528/PHESPV1743.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440528/PHESPV1743.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440528/ERR1440528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440528/ERR1440528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440528/PHESPV1743.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440528/PHESPV1743.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 124149487;129804683 ERS1195907 ERX1510906 GENOMIC 390245632 2016-06-10 PHESPV1743 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440528/PHESPV1743.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440528/PHESPV1743.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440528 PHESPV1743 ERR1440598 PHESPV1813 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/008/ERR1440598 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440598 35f18edd0930279d7caff4035702bc5d;e1fc418baeb36b78be2c00857f1d7b4f 1313 123936091 1bf4b7ac1db6983e86325a1b76463228;0a51f5c72a9941fa9311eb008446cd36 SAMEA4024867 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440598/ERR1440598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440598/ERR1440598_2.fastq.gz 1464479 WGS PHESPV1813 RANDOM 83845902;84908064 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0b0d8b7d06da0996e5be13f9870693f5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440598/ERR1440598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/008/ERR1440598/ERR1440598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440598/PHESPV1813.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440598/PHESPV1813.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440598/ERR1440598_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/008/ERR1440598/ERR1440598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440598/PHESPV1813.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440598/PHESPV1813.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88792311;89820685 ERS1195977 ERX1510976 GENOMIC 283756919 2016-06-10 PHESPV1813 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440598/PHESPV1813.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440598/PHESPV1813.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/008/ERR1440598 PHESPV1813 ERR1440357 PHESPV1572 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440357 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440357 8160bcc26637835975c7850df14ccb85;4d006fad3bd0aad8fcabe94288cf053b 1313 195179493 905246d960b22a48ada5cdb224772ba5;d8bc87348e02edad7e2c620d71e7cdfb SAMEA4024626 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440357/ERR1440357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440357/ERR1440357_2.fastq.gz 2131523 WGS PHESPV1572 RANDOM 130809471;132917930 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c85f41f0c91d9f1cc9732b23717881ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440357/ERR1440357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440357/ERR1440357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440357/PHESPV1572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440357/PHESPV1572.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440357/ERR1440357_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440357/ERR1440357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440357/PHESPV1572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440357/PHESPV1572.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 137567842;139659380 ERS1195736 ERX1510735 GENOMIC 421666691 2016-06-10 PHESPV1572 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440357/PHESPV1572.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440357/PHESPV1572.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440357 PHESPV1572 ERR1440313 PHESPV1528 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/003/ERR1440313 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440313 bb66e8410c6de5381c689ba8ae66d7b4;ccfb6f1cf52271f856934aec2e4ab156 1313 146283921 7f238ecffd067f420c85ad1f1845353c;5fe8d03b33f5c5e90a30e20d31d8a78f SAMEA4024582 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440313/ERR1440313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440313/ERR1440313_2.fastq.gz 1598524 WGS PHESPV1528 RANDOM 98119784;99258995 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b05f83e5a0cb108be7abb69e855989ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440313/ERR1440313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/003/ERR1440313/ERR1440313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440313/PHESPV1528.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440313/PHESPV1528.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440313/ERR1440313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/003/ERR1440313/ERR1440313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440313/PHESPV1528.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440313/PHESPV1528.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103358492;104472622 ERS1195692 ERX1510691 GENOMIC 316366031 2016-06-10 PHESPV1528 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440313/PHESPV1528.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440313/PHESPV1528.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/003/ERR1440313 PHESPV1528 ERR1440457 PHESPV1672 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/007/ERR1440457 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440457 72208fece2d1b870d3571d856fddb532;69ca9e8275a8d2aa9953295ff1167bef 1313 257402654 1c68259f7126045911c79f9139b773f6;59265d8cce3da6208d544f7214d27997 SAMEA4024726 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440457/ERR1440457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440457/ERR1440457_2.fastq.gz 2872031 WGS PHESPV1672 RANDOM 185049748;187504045 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a6c26b6b547a618d50c80e897e0ae228 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440457/ERR1440457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/007/ERR1440457/ERR1440457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440457/PHESPV1672.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440457/PHESPV1672.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440457/ERR1440457_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/007/ERR1440457/ERR1440457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440457/PHESPV1672.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440457/PHESPV1672.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 177797163;180238649 ERS1195836 ERX1510835 GENOMIC 563474389 2016-06-10 PHESPV1672 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440457/PHESPV1672.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440457/PHESPV1672.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/007/ERR1440457 PHESPV1672 ERR1440584 PHESPV1799 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/004/ERR1440584 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440584 2d92913e6637d519d0c82aab31cd107c;b2486e67f26d89433b22aefdff9b4e0a 1313 203103128 98a58bcf1ffc27191fd5b6e949c950db;9ae3c413f4a9a112c0c7d57d62c5d01e SAMEA4024853 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440584/ERR1440584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440584/ERR1440584_2.fastq.gz 2282175 WGS PHESPV1799 RANDOM 147212527;147718732 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 58f87ff33ca3327795cb7bf4fc5d0fad ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440584/ERR1440584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/004/ERR1440584/ERR1440584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440584/PHESPV1799.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440584/PHESPV1799.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440584/ERR1440584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/004/ERR1440584/ERR1440584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440584/PHESPV1799.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440584/PHESPV1799.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 141475084;141981966 ERS1195963 ERX1510962 GENOMIC 444603092 2016-06-10 PHESPV1799 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440584/PHESPV1799.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440584/PHESPV1799.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/004/ERR1440584 PHESPV1799 ERR1438804 PHESPV0014 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438804 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438804 b30d85f6cac5d55119cb14474f0ae390;9f54f0e14e0db32ca8da40c835800adb 1313 142619444 e4e56ac11ab9f81c3302a5455f3eadf1;f60d39dc68750c703a708d9ce262898e SAMEA4023073 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438804/ERR1438804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438804/ERR1438804_2.fastq.gz 1608565 WGS PHESPV0014 RANDOM 95896438;97312358 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a74748f920519565f4629c141597c94e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438804/ERR1438804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438804/ERR1438804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438804/PHESPV0014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438804/PHESPV0014.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438804/ERR1438804_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438804/ERR1438804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438804/PHESPV0014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438804/PHESPV0014.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 101238840;102652089 ERS1194183 ERX1509182 GENOMIC 319055782 2016-06-10 PHESPV0014 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438804/PHESPV0014.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438804/PHESPV0014.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438804 PHESPV0014 ERR1440596 PHESPV1811 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/006/ERR1440596 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440596 3b98932e974de5baf86f422566d9dd15;cf7441967a999ad66edcda46b1577544 1313 87865602 023e9b3b5a45d85e6ae5ad226fe2af49;874520245f989768c6640ff1a2932149 SAMEA4024865 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440596/ERR1440596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440596/ERR1440596_2.fastq.gz 1086804 WGS PHESPV1811 RANDOM 60462470;60478050 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9339fb34cc373c330d8648b039589dc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440596/ERR1440596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/006/ERR1440596/ERR1440596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440596/PHESPV1811.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440596/PHESPV1811.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440596/ERR1440596_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/006/ERR1440596/ERR1440596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440596/PHESPV1811.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440596/PHESPV1811.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64227677;64292687 ERS1195975 ERX1510974 GENOMIC 213154795 2016-06-10 PHESPV1811 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440596/PHESPV1811.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440596/PHESPV1811.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/006/ERR1440596 PHESPV1811 ERR1440595 PHESPV1810 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR144/005/ERR1440595 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440595 0de76dded3111847d3e31bebdd603534;cdb6408b0b8fa96ed354af3b0b3da5e6 1313 129173387 883a63d0f1f6051a32fc1228b2ad5413;838f8f8274f482af0735d696c6775a4c SAMEA4024864 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440595/ERR1440595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440595/ERR1440595_2.fastq.gz 1598194 WGS PHESPV1810 RANDOM 88833865;88864766 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 48c0c85515dd5b11bd59103206223044 ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440595/ERR1440595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR144/005/ERR1440595/ERR1440595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440595/PHESPV1810.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440595/PHESPV1810.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440595/ERR1440595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR144/005/ERR1440595/ERR1440595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440595/PHESPV1810.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR144/ERR1440595/PHESPV1810.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94090814;94174641 ERS1195974 ERX1510973 GENOMIC 313467183 2016-06-10 PHESPV1810 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440595/PHESPV1810.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR144/ERR1440595/PHESPV1810.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR144/005/ERR1440595 PHESPV1810 ERR3530250 300867 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530250 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530250 fd44e697b54d67b1ce40b9412b7ad9ae;b528ae83c22184a5408e2e9711283a41 1313 135092254 fb830f41f7aa31a41f3220691fbeb540;ad213cdb53ba491805b4e9f851373e93 SAMEA5786273 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530250/ERR3530250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530250/ERR3530250_2.fastq.gz 1594636 WGS 300867 RANDOM 98023418;99607964 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3d1e7b47ab4dd5ea5adfe5aad85a67ba ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530250/ERR3530250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530250/ERR3530250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530250/300867.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530250/300867.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530250/ERR3530250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530250/ERR3530250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530250/300867.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530250/300867.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94022572;95579771 ERS3756415 ERX3549392 GENOMIC 315356117 2019-09-19 300867 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530250/300867.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530250/300867.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530250 300867 ERR3530251 651721 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530251 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530251 f8968fd9611d24db1db0e03110169ef1;d3aec4ecdfa396d9d034cef465d884dd 1313 137462581 ea898dad7f3323183da9066783f9d3a1;90ab533613c416155b8987bc5bf64b40 SAMEA5786105 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530251/ERR3530251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530251/ERR3530251_2.fastq.gz 1606538 WGS 651721 RANDOM 101591598;103266150 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 19b1b4574446198445f81ce78ab20d88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530251/ERR3530251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530251/ERR3530251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530251/651721.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530251/651721.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530251/ERR3530251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530251/ERR3530251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530251/651721.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530251/651721.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97342295;99013950 ERS3756247 ERX3549224 GENOMIC 321167029 2019-09-19 651721 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530251/651721.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530251/651721.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530251 651721 ERR3530252 759550 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530252 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530252 c8f7b303990e51c767f69d040da8f4c6;9d74621dfc3597a30c9806ba67652f05 1313 168567229 7ba628a6479dbccc7a6b2551d095ecbc;c551cf73e61384496ec7e97e08180836 SAMEA5785457 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530252/ERR3530252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530252/ERR3530252_2.fastq.gz 1978922 WGS 759550 RANDOM 121829408;128452468 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 55306eadcf06f892d617ecfb420fd897 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530252/ERR3530252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530252/ERR3530252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530252/759550.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530252/759550.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530252/ERR3530252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530252/ERR3530252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530252/759550.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530252/759550.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116573195;123189516 ERS3755600 ERX3548577 GENOMIC 393633450 2019-09-19 759550 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530252/759550.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530252/759550.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530252 759550 ERR3530253 760318 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530253 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530253 9261f84fe41925e921863eaca50dde84;b2780e194785ce3b5055a7acfd3f68ee 1313 119986132 8d5282557d21e62111f9eb597142b0fc;a668a143caec7b254bed50f885004094 SAMEA5785450 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530253/ERR3530253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530253/ERR3530253_2.fastq.gz 1418269 WGS 760318 RANDOM 88323205;90789446 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c1fe3105d71372b185fa8650e36d8cfd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530253/ERR3530253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530253/ERR3530253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530253/760318.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530253/760318.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530253/ERR3530253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530253/ERR3530253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530253/760318.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530253/760318.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84675887;87124404 ERS3755593 ERX3548570 GENOMIC 283450493 2019-09-19 760318 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530253/760318.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530253/760318.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530253 760318 ERR3530254 717890 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530254 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530254 70a0796cca34b606c3c7212f0e69afcd;2544c181280de26d4f36c56201379903 1313 182282367 4de0e2c5539389349d6a909409138590;f77420461c944cc5c5e59772cd2f3d31 SAMEA5786028 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530254/ERR3530254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530254/ERR3530254_2.fastq.gz 2190564 WGS 717890 RANDOM 135212321;136448153 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 68749969ecd7f7b69cab0556d5a1674c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530254/ERR3530254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530254/ERR3530254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530254/717890.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530254/717890.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530254/ERR3530254_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530254/ERR3530254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530254/717890.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530254/717890.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129448462;130671739 ERS3756170 ERX3549147 GENOMIC 433345129 2019-09-19 717890 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530254/717890.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530254/717890.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530254 717890 ERR3530255 753487 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530255 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530255 0b2b8098819c9a3ec85ca90ca64c3fff;b78687529454aff2c4dd0d3f6f46aff1 1313 169586100 6f59b080627a13bbafb056f75c62712d;9a1bff70ae8892523509aa0f8eaa7aec SAMEA5785705 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530255/ERR3530255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530255/ERR3530255_2.fastq.gz 1902323 WGS 753487 RANDOM 125726295;124179645 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a220f7992ce9ac598e1b56ec6aa5aa26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530255/ERR3530255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530255/ERR3530255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530255/753487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530255/753487.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530255/ERR3530255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530255/ERR3530255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530255/753487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530255/753487.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120684128;119163791 ERS3755848 ERX3548825 GENOMIC 375697598 2019-09-19 753487 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530255/753487.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530255/753487.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530255 753487 ERR3530256 304287 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530256 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530256 4e110f3805f78cd7b479cf003f91fffd;411cb2d0d24ef6b88bc68ff7870dd4e8 1313 195934375 ac5e75d0c2e4865443af93c4d0281c50;e436492d0fc83ee54f9aab7286d65c84 SAMEA5786239 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530256/ERR3530256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530256/ERR3530256_2.fastq.gz 2305056 WGS 304287 RANDOM 144188486;145119803 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c248b63476d2b7386c57f4bb7e940e04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530256/ERR3530256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530256/ERR3530256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530256/304287.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530256/304287.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530256/ERR3530256_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530256/ERR3530256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530256/304287.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530256/304287.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 138234183;139153580 ERS3756381 ERX3549358 GENOMIC 450584042 2019-09-19 304287 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530256/304287.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530256/304287.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530256 304287 ERR3530257 720240 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530257 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530257 2a41ba3820a4a09e827520bdd39c3193;a4f963c21dfa39d232ddccd66c1b3355 1313 116943838 4297fc5f178a922eaa3ecef4d000a1bf;9c16632de13d93356464093822c2c562 SAMEA5785894 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530257/ERR3530257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530257/ERR3530257_2.fastq.gz 1300689 WGS 720240 RANDOM 84868944;86790923 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7a0cacb4e24870d2a0f9d3e1ee1de225 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530257/ERR3530257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530257/ERR3530257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530257/720240.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530257/720240.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530257/ERR3530257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530257/ERR3530257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530257/720240.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530257/720240.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81557848;83470220 ERS3756037 ERX3549014 GENOMIC 257613160 2019-09-19 720240 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530257/720240.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530257/720240.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530257 720240 ERR3530258 753417 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530258 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530258 d876a0726ac033c5868d62fce5fdb61f;1b983404555b59605c8132d786a69a8c 1313 182065047 78f3df0fa0889cb81efcc35257aa7b53;e1136006d8ae6e7481f85672ba09f265 SAMEA5785773 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530258/ERR3530258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530258/ERR3530258_2.fastq.gz 2002958 WGS 753417 RANDOM 131047221;134483207 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b26d40974a489a4ac334192faf92228e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530258/ERR3530258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530258/ERR3530258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530258/753417.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530258/753417.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530258/ERR3530258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530258/ERR3530258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530258/753417.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530258/753417.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125684413;129130853 ERS3755916 ERX3548893 GENOMIC 391377729 2019-09-19 753417 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530258/753417.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530258/753417.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530258 753417 ERR3530259 720244 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530259 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530259 917260ee2fdebcf446b44b3d8b63c20b;dd8eff53a69ab55da5847a4ed8edcb21 1313 243008939 628cf3757bef9371678c4dff851a890b;b2c5a42f05d064bf03e051bf484273f5 SAMEA5785890 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530259/ERR3530259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530259/ERR3530259_2.fastq.gz 2715755 WGS 720244 RANDOM 175773869;180064879 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 28b800613d92cab1919ef5ca246662cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530259/ERR3530259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530259/ERR3530259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530259/720244.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530259/720244.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530259/ERR3530259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530259/ERR3530259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530259/720244.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530259/720244.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 168717560;172991601 ERS3756033 ERX3549010 GENOMIC 537606986 2019-09-19 720244 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530259/720244.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530259/720244.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530259 720244 ERR3530261 720978 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530261 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530261 e6d705d9baf4cc949c276ecd500725d1;528a3dbd84a4808f9f688ecc1224ca5e 1313 173862648 1e94f64a6bbcf76353637d5fde565a8b;f9cf57b12ca98d885c5671d5cc8a5d69 SAMEA5785830 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530261/ERR3530261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530261/ERR3530261_2.fastq.gz 1779966 WGS 720978 RANDOM 122625904;127319501 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 667730cc503b21861abc1eb96dc3ec09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530261/ERR3530261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530261/ERR3530261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530261/720978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530261/720978.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530261/ERR3530261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530261/ERR3530261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530261/720978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530261/720978.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117961156;122558003 ERS3755973 ERX3548950 GENOMIC 351459157 2019-09-19 720978 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530261/720978.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530261/720978.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530261 720978 ERR3530260 720203 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530260 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530260 4bc9154bf1cc89795e312c9914b44da5;6c067dc854adb2f63559d380442c5349 1313 147837038 b577d6a5935121a4060f358ed3eca5b9;a6d079dacaf7df311efa0165d6f1abc6 SAMEA5785932 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530260/ERR3530260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530260/ERR3530260_2.fastq.gz 1634690 WGS 720203 RANDOM 107131599;109572415 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 034af92c255e663a0270cd3cde40a99e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530260/ERR3530260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530260/ERR3530260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530260/720203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530260/720203.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530260/ERR3530260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530260/ERR3530260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530260/720203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530260/720203.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102810405;105230833 ERS3756074 ERX3549051 GENOMIC 323611585 2019-09-19 720203 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530260/720203.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530260/720203.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530260 720203 ERR3530262 308609 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530262 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530262 8a9bb28f693eb360b5a9b3edc4c481c1;9b4816660e2d4346bb4599e2e1f4c27d 1313 143654152 71accb19a4b97fbd9ea2ad8ff67b342b;d042e3ca8a33eae4343acf9dd084ae99 SAMEA5786181 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530262/ERR3530262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530262/ERR3530262_2.fastq.gz 1606783 WGS 308609 RANDOM 104970812;106181032 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 858e9c29a7b1697e004076c56021afe3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530262/ERR3530262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530262/ERR3530262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530262/308609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530262/308609.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530262/ERR3530262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530262/ERR3530262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530262/308609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530262/308609.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100766626;101960682 ERS3756323 ERX3549300 GENOMIC 315163964 2019-09-19 308609 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530262/308609.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530262/308609.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530262 308609 ERR3530264 660124 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530264 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530264 2c5dcced395a1d4498770d2680d08a35;3b9db3c8b54e289db09fb09aee42bc74 1313 194322738 0446fa57d41a5b6fbddf7f72fc67cb69;fcd85871b2203bc40df08f1c8d61d990 SAMEA5786081 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530264/ERR3530264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530264/ERR3530264_2.fastq.gz 2262015 WGS 660124 RANDOM 139904309;148008316 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1a9d9354ff2ef8431e5c9073897b05b5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530264/ERR3530264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530264/ERR3530264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530264/660124.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530264/660124.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530264/ERR3530264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530264/ERR3530264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530264/660124.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530264/660124.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 133954867;142064163 ERS3756223 ERX3549200 GENOMIC 450973933 2019-09-19 660124 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530264/660124.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530264/660124.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530264 660124 ERR3530263 756611 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530263 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530263 a876816ba6d87e7feecbb263c3fda7a7;a4a8bbb14dbce9a014ffc7de29bf0bd9 1313 109579108 0c9ff436da549455230ee131728040e7;1ad3383509f65bf541ee76b2a29169eb SAMEA5785666 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530263/ERR3530263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530263/ERR3530263_2.fastq.gz 1160021 WGS 756611 RANDOM 77351678;81818066 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b9bfcf471b112f7da01a28edb0ac5c53 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530263/ERR3530263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530263/ERR3530263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530263/756611.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530263/756611.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530263/ERR3530263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530263/ERR3530263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530263/756611.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530263/756611.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74445927;78831360 ERS3755809 ERX3548786 GENOMIC 230033204 2019-09-19 756611 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530263/756611.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530263/756611.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530263 756611 ERR3530265 717938 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530265 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530265 af4197645d616494a0ba73405b6f4dda;209e658cecc9077e0f0c91b0a2cd8993 1313 154207973 06112e364cc530507d833bf1fc27b9c0;19ad1c63580d64a5e00029b71ae620d7 SAMEA5786002 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530265/ERR3530265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530265/ERR3530265_2.fastq.gz 1838424 WGS 717938 RANDOM 114084838;116339773 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d8d3b4669da06d56564eca746af6d486 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530265/ERR3530265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530265/ERR3530265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530265/717938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530265/717938.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530265/ERR3530265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530265/ERR3530265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530265/717938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530265/717938.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109185495;111436934 ERS3756144 ERX3549121 GENOMIC 365611856 2019-09-19 717938 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530265/717938.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530265/717938.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530265 717938 ERR3530266 657387 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530266 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530266 6b7c387d23315c81398f73168c15e889;bdac43274649d270023f2c4222179f04 1313 181341685 5bb5d183a7b46db487c2af5c6f305238;47bbfb802e628c0be3f022f039c9e532 SAMEA5786086 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530266/ERR3530266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530266/ERR3530266_2.fastq.gz 1976458 WGS 657387 RANDOM 130949191;134351393 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ea8fc66da2b02e79ca56a73ccf9e4e53 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530266/ERR3530266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530266/ERR3530266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530266/657387.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530266/657387.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530266/ERR3530266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530266/ERR3530266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530266/657387.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530266/657387.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125774438;129154823 ERS3756228 ERX3549205 GENOMIC 389940144 2019-09-19 657387 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530266/657387.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530266/657387.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530266 657387 ERR3530268 756656 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530268 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530268 42f545d8b29ee97e3c8f5330db854291;805c2874e86aefa1276a78959a39a3fd 1313 176451760 436d22890f30f30f55b2312cf17abd97;e8612f369f350d6735760dd06d15d590 SAMEA5785622 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530268/ERR3530268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530268/ERR3530268_2.fastq.gz 1901522 WGS 756656 RANDOM 127415075;131094784 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8ecacc9e2009f6705002dfba38269ade ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530268/ERR3530268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530268/ERR3530268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530268/756656.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530268/756656.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530268/ERR3530268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530268/ERR3530268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530268/756656.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530268/756656.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122415468;126054316 ERS3755765 ERX3548742 GENOMIC 378737371 2019-09-19 756656 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530268/756656.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530268/756656.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530268 756656 ERR3530267 721002 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530267 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530267 df0c91da99b1ef36f8144a12970855da;d7b805a3f9271a6436306e52fb214c0f 1313 303278067 97f45fd15ca04e20f095a56a01c3d68a;6260a2762f5e55eed15cb80456cad985 SAMEA5785807 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530267/ERR3530267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530267/ERR3530267_2.fastq.gz 3163950 WGS 721002 RANDOM 218121143;220513922 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 01ce481a0eb48a934e5a0e6d67a81e25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530267/ERR3530267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530267/ERR3530267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530267/721002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530267/721002.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530267/ERR3530267_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530267/ERR3530267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530267/721002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530267/721002.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 209561669;211909611 ERS3755950 ERX3548927 GENOMIC 627469743 2019-09-19 721002 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530267/721002.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530267/721002.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530267 721002 ERR3530269 308593 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530269 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530269 9503958d545328e6559a079d2fd0df5b;eb130112a12df8e09de9ff7a46f3d8a0 1313 158375519 6e3160202be88a0c69ac9972013be883;77d19e00d26ad84a64db4e306cf359e5 SAMEA5786196 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530269/ERR3530269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530269/ERR3530269_2.fastq.gz 1747737 WGS 308593 RANDOM 115116584;117348726 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8a54aae18abe7b8f71ad35ef8a8d875e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530269/ERR3530269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530269/ERR3530269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530269/308593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530269/308593.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530269/ERR3530269_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530269/ERR3530269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530269/308593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530269/308593.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110465803;112681131 ERS3756338 ERX3549315 GENOMIC 345056475 2019-09-19 308593 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530269/308593.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530269/308593.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530269 308593 ERR3530270 756596 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530270 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530270 b1ec4948b2c32d5ed3a97bcbd7020278;45a9f54c053514848ee48792ba62f77c 1313 202211981 ae52fa7f25d8d23a9348d403abe4af5e;7dc906308b0f1cc9f4c8dc96cbd9539f SAMEA5785681 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530270/ERR3530270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530270/ERR3530270_2.fastq.gz 2155502 WGS 756596 RANDOM 145221843;149451700 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 702cebca12510a2c950c2c2b1927d539 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530270/ERR3530270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530270/ERR3530270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530270/756596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530270/756596.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530270/ERR3530270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530270/ERR3530270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530270/756596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530270/756596.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139568804;143747625 ERS3755824 ERX3548801 GENOMIC 428983484 2019-09-19 756596 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530270/756596.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530270/756596.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530270 756596 ERR3530271 308573 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530271 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530271 e4d7b097b18955a2c5eb1cb5c5d791f6;b079d093aa8bb1b171306b93c8472458 1313 172119534 12f08de26d2595b5c02aa3d088aa08d2;8c689be9916a2c99afe19e94d86de056 SAMEA5786214 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530271/ERR3530271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530271/ERR3530271_2.fastq.gz 1903011 WGS 308573 RANDOM 125706016;127342668 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e71bdacee7df327a795875f0351146be ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530271/ERR3530271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530271/ERR3530271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530271/308573.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530271/308573.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530271/ERR3530271_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530271/ERR3530271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530271/308573.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530271/308573.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120692602;122319356 ERS3756356 ERX3549333 GENOMIC 377042563 2019-09-19 308573 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530271/308573.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530271/308573.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530271 308573 ERR3530272 721020 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530272 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530272 aae69a622344b9e5d6617d12867ae22f;2d8894ec1f581bc266c8fa08b5c25b66 1313 114065301 74235bf6fc318e05752d5764711681ae;de8cbe48e4154e35a169f7257e4032fa SAMEA5785789 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530272/ERR3530272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530272/ERR3530272_2.fastq.gz 1178754 WGS 721020 RANDOM 81657615;83193144 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f9cf09a916e16272d820372d5d49bd7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530272/ERR3530272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530272/ERR3530272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530272/721020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530272/721020.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530272/ERR3530272_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530272/ERR3530272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530272/721020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530272/721020.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78684957;80195256 ERS3755932 ERX3548909 GENOMIC 232631705 2019-09-19 721020 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530272/721020.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530272/721020.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530272 721020 ERR3530273 720959 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530273 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530273 b5362f85ea13d4427c5f077d53d8c8bb;277d49cdab6208a5a56d8ba36c1b6659 1313 284405217 0ba5fc7e8952d255f7d9c32febc2e914;a4a2d45498a8463adad219ffb92057bf SAMEA5785849 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530273/ERR3530273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530273/ERR3530273_2.fastq.gz 2978458 WGS 720959 RANDOM 205174195;206242479 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 665c906f71fb0386ab3bccce6b2f7c47 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530273/ERR3530273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530273/ERR3530273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530273/720959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530273/720959.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530273/ERR3530273_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530273/ERR3530273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530273/720959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530273/720959.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 197245868;198287998 ERS3755992 ERX3548969 GENOMIC 590008447 2019-09-19 720959 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530273/720959.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530273/720959.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530273 720959 ERR3530274 753452 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530274 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530274 0e4fd3c34189ca99044f776e37d0c5e9;fd8ef90ea7e274909cbb763ba80d815a 1313 111033736 c5e4417f4c4546a5729ad53327b5c49f;5ded57443dc768ad335be900599fa625 SAMEA5785738 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530274/ERR3530274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530274/ERR3530274_2.fastq.gz 1234074 WGS 753452 RANDOM 81256753;81915552 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6c607a8baae641ab3180ee195ef4e825 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530274/ERR3530274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530274/ERR3530274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530274/753452.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530274/753452.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530274/ERR3530274_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530274/ERR3530274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530274/753452.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530274/753452.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78145142;78807484 ERS3755881 ERX3548858 GENOMIC 244703916 2019-09-19 753452 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530274/753452.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530274/753452.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530274 753452 ERR3530275 753423 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530275 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530275 03a382027b3ff5257db50a8e4848fa6f;46e19351cb2d853a3b896f3ff636464b 1313 123146746 2c02d6ceed5fbbf5c10da81e29ae288a;9106424cc85ddebfe888903ec99b5a24 SAMEA5785767 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530275/ERR3530275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530275/ERR3530275_2.fastq.gz 1348351 WGS 753423 RANDOM 88462211;91478778 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6daf81e16a7f022c7ae173a73a503092 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530275/ERR3530275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530275/ERR3530275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530275/753423.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530275/753423.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530275/ERR3530275_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530275/ERR3530275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530275/753423.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530275/753423.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85008924;88029351 ERS3755910 ERX3548887 GENOMIC 265954043 2019-09-19 753423 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530275/753423.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530275/753423.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530275 753423 ERR3530277 304290 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530277 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530277 2729f67f9bd32285f1fc6dd7b2ea6595;d4773716ff7bf4dc24228b6cc196b74b 1313 120603135 594096a56ef28339bd46341549a3b9ec;0cb473ebe1902e66a1e49a123a8da4b9 SAMEA5786237 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530277/ERR3530277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530277/ERR3530277_2.fastq.gz 1408846 WGS 304290 RANDOM 88802280;90262421 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4437c6619dc12a1fa79eebcee6851568 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530277/ERR3530277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530277/ERR3530277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530277/304290.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530277/304290.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530277/ERR3530277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530277/ERR3530277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530277/304290.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530277/304290.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85203826;86658214 ERS3756379 ERX3549356 GENOMIC 280160053 2019-09-19 304290 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530277/304290.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530277/304290.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530277 304290 ERR3530276 720183 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530276 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530276 2392b153d0afff1fff39096b37eddfe7;b7a2f6bdcc8659cb14bab8f80a5a10bd 1313 166262389 e153b4cd738394600152d41b4ef2ac64;f41d7553bbd7f63fa4f9bff4e3d808b3 SAMEA5785951 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530276/ERR3530276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530276/ERR3530276_2.fastq.gz 1859069 WGS 720183 RANDOM 120262951;123540366 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 524d7c68afb7d5afceb53e9b27fefa74 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530276/ERR3530276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530276/ERR3530276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530276/720183.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530276/720183.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530276/ERR3530276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530276/ERR3530276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530276/720183.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530276/720183.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 115281084;118555104 ERS3756093 ERX3549070 GENOMIC 365344993 2019-09-19 720183 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530276/720183.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530276/720183.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530276 720183 ERR3530278 756613 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530278 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530278 31570b963cc7f15248f2a95b387856da;c05e0f8db9b49799396786664a503ccb 1313 186944589 43fc02f02f1ba96021e8ca4271020418;e575523f0928cc6205f4371aece12936 SAMEA5785664 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530278/ERR3530278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530278/ERR3530278_2.fastq.gz 1993043 WGS 756613 RANDOM 132327403;139858557 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 607ccd0877c8166126ac681224fab227 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530278/ERR3530278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530278/ERR3530278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530278/756613.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530278/756613.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530278/ERR3530278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530278/ERR3530278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530278/756613.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530278/756613.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127118928;134557148 ERS3755807 ERX3548784 GENOMIC 395765962 2019-09-19 756613 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530278/756613.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530278/756613.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530278 756613 ERR3530279 756612 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530279 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530279 1535524528ff04368087fc5ebbade44a;7836e8cf6434ed21040319367bc69307 1313 187097377 f9f6de14d4ba6f873208025cd8dc6761;c75c7fe2be2dddb951641360d1574d79 SAMEA5785665 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530279/ERR3530279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530279/ERR3530279_2.fastq.gz 1987997 WGS 756612 RANDOM 132452735;139731084 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 79f356efa33f17fe177823b8dd197d34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530279/ERR3530279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530279/ERR3530279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530279/756612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530279/756612.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530279/ERR3530279_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530279/ERR3530279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530279/756612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530279/756612.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127244043;134422958 ERS3755808 ERX3548785 GENOMIC 395037035 2019-09-19 756612 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530279/756612.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530279/756612.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530279 756612 ERR3530280 717967 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530280 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530280 d5417edddbbd818a99d48d41f3b4d3d7;d55e3991dce1fd97ae1bd4611dedc807 1313 228183683 bd4116371725dabda367e624ee80f7ec;1598eeb9e240ac4490c8f5878d8a2597 SAMEA5785974 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530280/ERR3530280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530280/ERR3530280_2.fastq.gz 2700809 WGS 717967 RANDOM 167480418;170147607 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b66ce0a2dc37bbcb576f08f3522b7940 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530280/ERR3530280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530280/ERR3530280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530280/717967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530280/717967.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530280/ERR3530280_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530280/ERR3530280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530280/717967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530280/717967.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 160353408;163005056 ERS3756116 ERX3549093 GENOMIC 528715407 2019-09-19 717967 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530280/717967.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530280/717967.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530280 717967 ERR3530281 311486 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530281 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530281 33462388a0e58b2fe12120ac3566f97d;21c4d879978a21555689d48c52677ca3 1313 247871539 b411abc45a3b2ce79bbb185b7743525d;1afa8ff427aecdd01fa6006d076e4f67 SAMEA5786138 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530281/ERR3530281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530281/ERR3530281_2.fastq.gz 2778907 WGS 311486 RANDOM 180494592;181929078 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3064be879553874290ddc5fdf9cb24fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530281/ERR3530281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530281/ERR3530281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530281/311486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530281/311486.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530281/ERR3530281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530281/ERR3530281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530281/311486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530281/311486.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 173156139;174600243 ERS3756280 ERX3549257 GENOMIC 548683383 2019-09-19 311486 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530281/311486.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530281/311486.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530281 311486 ERR3530282 758027 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530282 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530282 9296c50ffcade62c97bcb51649158bb2;b7b7be7182a49c67f1fb2e37a465a104 1313 154053573 a615345eebdd687546bdb01389d222da;b1993196889a718893c71ad4fb28c6cb SAMEA5785504 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530282/ERR3530282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530282/ERR3530282_2.fastq.gz 1884903 WGS 758027 RANDOM 113667399;116923534 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6d86643e059bbaa648019d11f508d5be ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530282/ERR3530282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530282/ERR3530282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530282/758027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530282/758027.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530282/ERR3530282_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530282/ERR3530282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530282/758027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530282/758027.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 108635381;111894116 ERS3755647 ERX3548624 GENOMIC 369553408 2019-09-19 758027 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530282/758027.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530282/758027.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530282 758027 ERR3530283 759515 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530283 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530283 65b66ace210bfc61865c3f82262261dc;80780206037d0aae657ef88fcda0f2a6 1313 160454315 33d8c657372a8de5c0056c6b29251e56;cc87291e7e7b34a7e3137d63c2e9271d SAMEA5785492 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530283/ERR3530283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530283/ERR3530283_2.fastq.gz 1909279 WGS 759515 RANDOM 117934927;121162443 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eef80396d1cb9468f4d7c80a1de7c8f4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530283/ERR3530283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530283/ERR3530283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530283/759515.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530283/759515.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530283/ERR3530283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530283/ERR3530283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530283/759515.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530283/759515.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112841465;116062756 ERS3755635 ERX3548612 GENOMIC 378942761 2019-09-19 759515 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530283/759515.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530283/759515.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530283 759515 ERR3530284 308617 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530284 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530284 38c0f7818e3015911617cb6e2d40706c;571dabcd894cb227e39001ab71550755 1313 202741822 6b99060180fcdffacbafd7f5f1a50f4c;ab1ebdf2f6888231edee98abd0671121 SAMEA5786177 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530284/ERR3530284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530284/ERR3530284_2.fastq.gz 2252180 WGS 308617 RANDOM 147320216;150041629 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d427d2dc0db041464bcd62de15cdb771 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530284/ERR3530284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530284/ERR3530284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530284/308617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530284/308617.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530284/ERR3530284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530284/ERR3530284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530284/308617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530284/308617.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 141440061;144158653 ERS3756319 ERX3549296 GENOMIC 445875778 2019-09-19 308617 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530284/308617.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530284/308617.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530284 308617 ERR3530286 304291 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530286 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530286 566073f5febd03e8fb431add03105ca6;3724849985b2a050dc39ae3d71e1bcd6 1313 167789647 b3ff8682fc781a7e13414e4585fee76e;addcc266909d7858e06209fffed69132 SAMEA5786236 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530286/ERR3530286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530286/ERR3530286_2.fastq.gz 1936604 WGS 304291 RANDOM 122500325;125611539 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 582e34468c004dba3c1292d265b927a5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530286/ERR3530286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530286/ERR3530286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530286/304291.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530286/304291.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530286/ERR3530286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530286/ERR3530286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530286/304291.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530286/304291.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117405146;120508102 ERS3756378 ERX3549355 GENOMIC 384539585 2019-09-19 304291 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530286/304291.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530286/304291.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530286 304291 ERR3530288 756650 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530288 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530288 bc5f465bc95e0b5aaa66f385db8c7bfd;8f2c8b7ed65c193c8455c29c7f042209 1313 124386421 a0cf18eb4334b60522a34438bca5f370;f53d8ba0a16d1053873896a8ac1989c5 SAMEA5785628 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530288/ERR3530288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530288/ERR3530288_2.fastq.gz 1351436 WGS 756650 RANDOM 90125697;92024983 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2575f61a239c897fa67c2c9745b91184 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530288/ERR3530288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530288/ERR3530288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530288/756650.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530288/756650.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530288/ERR3530288_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530288/ERR3530288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530288/756650.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530288/756650.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86703309;88573568 ERS3755771 ERX3548748 GENOMIC 266441283 2019-09-19 756650 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530288/756650.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530288/756650.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530288 756650 ERR3530285 758018 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530285 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530285 8b9272bb2b897812b104d4845c133c5b;963ef439f7f8e322f164a344f408d57c 1313 166555525 b023231ad9963243902dea79f61d6dcd;f670aecea5bd4afc1c6f4ab8ef6e19fc SAMEA5785513 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530285/ERR3530285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530285/ERR3530285_2.fastq.gz 2018381 WGS 758018 RANDOM 122295786;126877430 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a064c006e158601905d178293e110993 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530285/ERR3530285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530285/ERR3530285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530285/758018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530285/758018.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530285/ERR3530285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530285/ERR3530285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530285/758018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530285/758018.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116967732;121538030 ERS3755656 ERX3548633 GENOMIC 400767684 2019-09-19 758018 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530285/758018.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530285/758018.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530285 758018 ERR3530289 756684 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530289 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530289 ecc8c875fc920ecaeb429ded970e2025;fa811562e271cfae651485956a9b997e 1313 119463261 3edddef49079c2b86d5556f278e8796d;dbaa9dca43a8ae4bb00a0e7d4e11f7aa SAMEA5785594 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530289/ERR3530289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530289/ERR3530289_2.fastq.gz 1267099 WGS 756684 RANDOM 85819198;88110577 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5c33e1d8eb3e6174530c3da8e35581a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530289/ERR3530289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530289/ERR3530289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530289/756684.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530289/756684.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530289/ERR3530289_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530289/ERR3530289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530289/756684.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530289/756684.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82625290;84870891 ERS3755737 ERX3548714 GENOMIC 251212472 2019-09-19 756684 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530289/756684.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530289/756684.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530289 756684 ERR3530287 731072 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530287 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530287 7f1daa8c9edb13b96c87f21a7466acb6;0c95a9b02a067cf8f3e179c7b0152962 1313 184326411 a01fd4c0ada3da346c77354430054a51;6db6c2d3fe7ceafe0e909ed8b6a8dbf4 SAMEA5785781 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530287/ERR3530287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530287/ERR3530287_2.fastq.gz 1969912 WGS 731072 RANDOM 132864169;136448452 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 222815293d02ccda6e96424afd3ebddd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530287/ERR3530287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530287/ERR3530287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530287/731072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530287/731072.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530287/ERR3530287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530287/ERR3530287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530287/731072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530287/731072.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127732393;131290739 ERS3755924 ERX3548901 GENOMIC 393224965 2019-09-19 731072 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530287/731072.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530287/731072.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530287 731072 ERR3530290 308590 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530290 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530290 738bacd5be7f65698cdfe29792354749;ab1eff97ce8868708ea7af35cfdd24bd 1313 215412165 3f6ac6d5aa4361a7ec7ccfa1a06d4e3e;8d55274c5843082673713d2a80ee926e SAMEA5786198 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530290/ERR3530290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530290/ERR3530290_2.fastq.gz 2389711 WGS 308590 RANDOM 156469967;159454326 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c736fe80572c89b118b8680219fd1b09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530290/ERR3530290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530290/ERR3530290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530290/308590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530290/308590.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530290/ERR3530290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530290/ERR3530290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530290/308590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530290/308590.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 150295407;153279079 ERS3756340 ERX3549317 GENOMIC 474521447 2019-09-19 308590 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530290/308590.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530290/308590.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530290 308590 ERR3530292 289708 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530292 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530292 e7db802ea3c9e40abfc2e23ddf55c2d9;b887de47787241cf18fa4cf98edd10e1 1313 298986565 9070c23d53eb1261c5c20f1e883fa1f5;72c1bd618574b3f76fefc1f25069b3a6 SAMEA5786303 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530292/ERR3530292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530292/ERR3530292_2.fastq.gz 3247607 WGS 289708 RANDOM 212681438;214790292 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5807ca51ec4ef5250893994c9320ef20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530292/ERR3530292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530292/ERR3530292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530292/289708.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530292/289708.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530292/ERR3530292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530292/ERR3530292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530292/289708.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530292/289708.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 204112199;206223732 ERS3756445 ERX3549422 GENOMIC 634409638 2019-09-19 289708 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530292/289708.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530292/289708.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530292 289708 ERR3530291 289710 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530291 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530291 9a1214ccc8fd2844af29e94562c19875;899f28353e7236493fa4b1c51d99a360 1313 124358659 0f742b14996d309c0fb06e701e7b771a;1dd1345f07a21170aee061ac7cd52698 SAMEA5786302 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530291/ERR3530291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530291/ERR3530291_2.fastq.gz 1338323 WGS 289710 RANDOM 88266157;89822065 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f366756e6720c0031f37dcc93adcfa6f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530291/ERR3530291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530291/ERR3530291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530291/289710.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530291/289710.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530291/ERR3530291_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530291/ERR3530291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530291/289710.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530291/289710.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85003065;86547544 ERS3756444 ERX3549421 GENOMIC 264110983 2019-09-19 289710 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530291/289710.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530291/289710.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530291 289710 ERR3530294 759506 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530294 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530294 12f0c6ee223977e32737063b6fbb9328;690e830c22a4e03d838d2de42e4df7c3 1313 131400725 c9f190aa0f18affe816af9ff6951ca88;29b37c723e3229373e2f7a3f0a3f5cae SAMEA5785501 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530294/ERR3530294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530294/ERR3530294_2.fastq.gz 1545727 WGS 759506 RANDOM 96815445;98656664 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f60056a3c5d9f0adde53e56e0f4da787 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530294/ERR3530294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530294/ERR3530294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530294/759506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530294/759506.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530294/ERR3530294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530294/ERR3530294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530294/759506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530294/759506.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92734825;94567197 ERS3755644 ERX3548621 GENOMIC 306876376 2019-09-19 759506 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530294/759506.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530294/759506.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530294 759506 ERR3530293 753490 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530293 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530293 c84dcaade08f71efb9c9318d814fe5e6;00a446a01bb3e142d9f396dbf9db70e4 1313 94306921 a260893fa1fdbdebfec892899d4e1200;94b9d62d49e17ac7d8989d81e72486c3 SAMEA5785702 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530293/ERR3530293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530293/ERR3530293_2.fastq.gz 1041890 WGS 753490 RANDOM 69058421;69688373 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 897ae2976fddc90ff58266443c7d7e26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530293/ERR3530293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530293/ERR3530293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530293/753490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530293/753490.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530293/ERR3530293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530293/ERR3530293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530293/753490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530293/753490.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66417968;67045713 ERS3755845 ERX3548822 GENOMIC 207628866 2019-09-19 753490 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530293/753490.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530293/753490.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530293 753490 ERR3530295 721730 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530295 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530295 5c4fdd7c74bc901696bf692997a83b4c;faba56fcf8695d597e501f6d2bfc5ec2 1313 153662311 47fc7669dec231f6c7caaa8ea361769b;da80fd19a771727318678a9c7992850f SAMEA5785788 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530295/ERR3530295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530295/ERR3530295_2.fastq.gz 1615303 WGS 721730 RANDOM 108898196;112541266 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dac873ab1c4cd9261bcd4b0b556a8e05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530295/ERR3530295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530295/ERR3530295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530295/721730.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530295/721730.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530295/ERR3530295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530295/ERR3530295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530295/721730.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530295/721730.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104724865;108360900 ERS3755931 ERX3548908 GENOMIC 316020663 2019-09-19 721730 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530295/721730.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530295/721730.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530295 721730 ERR3530296 721003 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530296 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530296 0f2e74d1d1572038abc8d6d8663c5f2c;57901b1a57bd79d251a712fff94624ea 1313 132121983 d08fb1e389ac6ece7287289c18d915f9;acf788ea963d2dc2bb678440f69ba671 SAMEA5785806 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530296/ERR3530296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530296/ERR3530296_2.fastq.gz 1374625 WGS 721003 RANDOM 94835545;96529281 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d1a0094e98584340413764b67601c43b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530296/ERR3530296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530296/ERR3530296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530296/721003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530296/721003.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530296/ERR3530296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530296/ERR3530296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530296/721003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530296/721003.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91354872;93021774 ERS3755949 ERX3548926 GENOMIC 272263889 2019-09-19 721003 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530296/721003.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530296/721003.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530296 721003 ERR3530299 304277 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530299 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530299 df5778bc40a95e18504e590d22bc62e1;f5c968ffca79c6e5fee6965bf1173016 1313 154085659 0dd8daeedd45c5809f3c93b05e054513;c2a140e34cbaa17f2201a9ae0a49e77e SAMEA5786248 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530299/ERR3530299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530299/ERR3530299_2.fastq.gz 1795284 WGS 304277 RANDOM 113602778;114731712 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3c8ae97675f8c0684e71ae0ea73f01ba ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530299/ERR3530299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530299/ERR3530299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530299/304277.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530299/304277.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530299/ERR3530299_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530299/ERR3530299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530299/304277.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530299/304277.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 108899596;110018363 ERS3756390 ERX3549367 GENOMIC 354470015 2019-09-19 304277 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530299/304277.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530299/304277.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530299 304277 ERR3530297 660178 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530297 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530297 f33eede235369d6debe4ddc5d120ba5b;5cccf2ebdfe021b11e9031713030b344 1313 94726056 aeea37fa282729851f92a1dbb4a60db6;7732abdc4e6e8d933a142b2c52be85d1 SAMEA5786076 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530297/ERR3530297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530297/ERR3530297_2.fastq.gz 1105936 WGS 660178 RANDOM 66884163;73341934 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7ef562d3366b1a4157cddd2c094d5bc8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530297/ERR3530297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530297/ERR3530297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530297/660178.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530297/660178.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530297/ERR3530297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530297/ERR3530297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530297/660178.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530297/660178.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 64046554;70500239 ERS3756218 ERX3549195 GENOMIC 218462792 2019-09-19 660178 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530297/660178.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530297/660178.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530297 660178 ERR3530298 304286 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530298 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530298 6b6a54651bf5f9db69c34007dcb1ff82;133c5786433b4aead7e38b92000b8615 1313 156024071 4a1b6d3cd103f8e8632ce95bd020a5c4;e35064c21d834a7cd018696625e4cb86 SAMEA5786240 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530298/ERR3530298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530298/ERR3530298_2.fastq.gz 1806907 WGS 304286 RANDOM 114390216;116720297 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 25a127f80d70f87e987e821c25600ed7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530298/ERR3530298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530298/ERR3530298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530298/304286.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530298/304286.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530298/ERR3530298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530298/ERR3530298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530298/304286.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530298/304286.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109633713;111959689 ERS3756382 ERX3549359 GENOMIC 359190644 2019-09-19 304286 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530298/304286.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530298/304286.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530298 304286 ERR3530300 755700 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530300 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530300 6e08131018dc3a61c1540bd850634f09;b006381a84662bf9be89e9ab8b606417 1313 123641329 b9c216e9c834eb113ce6ebf9582afe00;34886c97c9cd4833182ff7fb3adc4992 SAMEA5785691 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530300/ERR3530300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530300/ERR3530300_2.fastq.gz 1425003 WGS 755700 RANDOM 89857994;93275093 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d6dc2f5e4a299043c33e431f6842e00d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530300/ERR3530300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530300/ERR3530300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530300/755700.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530300/755700.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530300/ERR3530300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530300/ERR3530300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530300/755700.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530300/755700.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86186851;89596278 ERS3755834 ERX3548811 GENOMIC 283805952 2019-09-19 755700 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530300/755700.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530300/755700.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530300 755700 ERR3530301 756619 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530301 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530301 96ce5e017d644e5bd516641b151ea89d;40869d38a888f5c185004f6bfcbdd74a 1313 118552776 a6f3756d25c948e51c21ec623f77284e;088133d3be8dfcac8d29215210c0e091 SAMEA5785658 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530301/ERR3530301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530301/ERR3530301_2.fastq.gz 1230474 WGS 756619 RANDOM 84503910;87154026 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c26b620d866517eab5ec99334fa19a6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530301/ERR3530301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530301/ERR3530301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530301/756619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530301/756619.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530301/ERR3530301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530301/ERR3530301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530301/756619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530301/756619.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81418143;84002078 ERS3755801 ERX3548778 GENOMIC 244507472 2019-09-19 756619 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530301/756619.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530301/756619.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530301 756619 ERR3530302 311480 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530302 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530302 c56dafd4998de007644e2408b6dc66db;b70061ae13c639e618852af6d3637aa5 1313 135398575 7ea04ce3a5e5d185074a8e978b2f66f6;e94bdc5ef38bdf59881bababc6824407 SAMEA5786144 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530302/ERR3530302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530302/ERR3530302_2.fastq.gz 1504189 WGS 311480 RANDOM 98338054;99708057 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7bd352320af7b1d2aa22e0157579ebd2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530302/ERR3530302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530302/ERR3530302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530302/311480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530302/311480.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530302/ERR3530302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530302/ERR3530302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530302/311480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530302/311480.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94356966;95729775 ERS3756286 ERX3549263 GENOMIC 296185130 2019-09-19 311480 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530302/311480.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530302/311480.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530302 311480 ERR3530304 300849 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530304 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530304 a5a63b2bbfc75e4eada352ae4f839349;21e11fa0d48287f04139d8e3ffb8162b 1313 120108104 959baaf9fbcf7028ed4769bd011b8915;7271b828a9004ebc224a96ae92c00991 SAMEA5786291 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530304/ERR3530304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530304/ERR3530304_2.fastq.gz 1402044 WGS 300849 RANDOM 87222404;88187574 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a92fcf943653b77cbabec5fc995f45b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530304/ERR3530304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530304/ERR3530304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530304/300849.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530304/300849.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530304/ERR3530304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530304/ERR3530304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530304/300849.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530304/300849.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83827940;84767239 ERS3756433 ERX3549410 GENOMIC 277715780 2019-09-19 300849 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530304/300849.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530304/300849.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530304 300849 ERR3530303 720231 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530303 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530303 0e6ed4764fb715dfc4a3d0ac785e7b40;778f5b8c850c3b5907a7c072a9aa72f5 1313 231084624 26c8cd9070a1317f039224c48fcaa001;0979dfa14213b6caf39dc9ee37acb57d SAMEA5785903 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530303/ERR3530303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530303/ERR3530303_2.fastq.gz 2665316 WGS 720231 RANDOM 170283837;169758226 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 69b0eec691872c195198532a346864db ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530303/ERR3530303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530303/ERR3530303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530303/720231.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530303/720231.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530303/ERR3530303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530303/ERR3530303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530303/720231.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530303/720231.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 163296274;162771307 ERS3756046 ERX3549023 GENOMIC 519673473 2019-09-19 720231 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530303/720231.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530303/720231.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530303 720231 ERR3530305 757939 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530305 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530305 7c82169be72b62f3e7b388b155f825e3;140e888d62d9c2d134e13454b7056080 1313 59456305 5a2fc6a8aa466ec62a9c17da09ccbe15;9630a93dfff318bfefca3835979c3e6e SAMEA5785589 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530305/ERR3530305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530305/ERR3530305_2.fastq.gz 717272 WGS 757939 RANDOM 43736402;45114340 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 56250ce5e56c9f848b1c829c8564d73e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530305/ERR3530305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530305/ERR3530305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530305/757939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530305/757939.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530305/ERR3530305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530305/ERR3530305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530305/757939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530305/757939.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 41911415;43283787 ERS3755732 ERX3548709 GENOMIC 139829824 2019-09-19 757939 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530305/757939.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530305/757939.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530305 757939 ERR3530307 720974 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530307 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530307 c31eac04c0f82e0b9923a2e8e534eef9;8615e7794af07c2ddf9393ae2ead1d48 1313 317081487 133c18c442837c88df7fc53c82d72236;68557ce2e3103257118e44699321955a SAMEA5785834 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530307/ERR3530307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530307/ERR3530307_2.fastq.gz 3273847 WGS 720974 RANDOM 225555312;231202528 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1bd09037a466e15488974d30da6e3608 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530307/ERR3530307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530307/ERR3530307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530307/720974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530307/720974.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530307/ERR3530307_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530307/ERR3530307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530307/720974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530307/720974.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 216496725;222057521 ERS3755977 ERX3548954 GENOMIC 648215931 2019-09-19 720974 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530307/720974.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530307/720974.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530307 720974 ERR3530306 757989 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530306 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530306 341754bf75443ae672069a4a32d494c1;4e729466767a4ed32eaab99e86d90eb4 1313 138658787 c8025c3bf076c44f1bcae04931339657;10142466cc4c5de619f28b3342318cb3 SAMEA5785541 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530306/ERR3530306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530306/ERR3530306_2.fastq.gz 1677662 WGS 757989 RANDOM 102693349;105095597 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c469279e9ce17774b151ab69d707d6ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530306/ERR3530306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530306/ERR3530306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530306/757989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530306/757989.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530306/ERR3530306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530306/ERR3530306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530306/757989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530306/757989.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98249334;100646374 ERS3755684 ERX3548661 GENOMIC 333364718 2019-09-19 757989 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530306/757989.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530306/757989.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530306 757989 ERR3530309 756624 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530309 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530309 d6b4ed25e83c96a235ff8fc33b89bdd4;cfc021c8b005ae0f6b921c7f504e8c0c 1313 108288304 6f82234745a8211fa0aa539bd26809ad;c18f667e8e55b577e1148c9a31819997 SAMEA5785653 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530309/ERR3530309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530309/ERR3530309_2.fastq.gz 1173260 WGS 756624 RANDOM 78636150;80220812 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 97d33c6802250c0cf6ce39acc17a4e03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530309/ERR3530309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530309/ERR3530309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530309/756624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530309/756624.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530309/ERR3530309_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530309/ERR3530309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530309/756624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530309/756624.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75719781;77275635 ERS3755796 ERX3548773 GENOMIC 233192610 2019-09-19 756624 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530309/756624.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530309/756624.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530309 756624 ERR3530308 753447 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530308 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530308 904202dc2a101384a0b049a0105a6b03;21cc2bd3b6c0c114ee9e137390acd0b4 1313 150343051 28d8024e3edca79667447f859c2cf339;ce9b8fcb8dffd7872faeeaa99e3858f8 SAMEA5785743 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530308/ERR3530308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530308/ERR3530308_2.fastq.gz 1683283 WGS 753447 RANDOM 111253900;110529250 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 11b011e66edd739a883bc0442a9d6cfb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530308/ERR3530308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530308/ERR3530308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530308/753447.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530308/753447.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530308/ERR3530308_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530308/ERR3530308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530308/753447.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530308/753447.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106803910;106084716 ERS3755886 ERX3548863 GENOMIC 334717795 2019-09-19 753447 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530308/753447.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530308/753447.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530308 753447 ERR3530310 720194 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530310 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530310 1db58158ca6f2a01ecb177ebdb84d176;6799ed8bd9573d847c50a06ca79dd70f 1313 101194390 3715f01e246becb0dc361674f0b38e32;1dd2f6a8e1248cd00472d67e89cb9add SAMEA5785941 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530310/ERR3530310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530310/ERR3530310_2.fastq.gz 1132540 WGS 720194 RANDOM 74246250;74848752 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9974039a49370da0db601056c1848647 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530310/ERR3530310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530310/ERR3530310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530310/720194.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530310/720194.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530310/ERR3530310_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530310/ERR3530310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530310/720194.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530310/720194.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71354046;71943630 ERS3756083 ERX3549060 GENOMIC 225584128 2019-09-19 720194 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530310/720194.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530310/720194.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530310 720194 ERR3530312 720201 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530312 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530312 7c2206d9f8904903a58fbc4568afe499;25f767acab8106c5ac12350b3ef3a8f7 1313 216691301 7e69914d56e2074a44ba3b588c0dc7e2;15ea245c6306440651ce7cdd12914923 SAMEA5785934 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530312/ERR3530312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530312/ERR3530312_2.fastq.gz 2383861 WGS 720201 RANDOM 154983424;160918779 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b0aeaf6fc11192a111fb429b24163ddc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530312/ERR3530312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530312/ERR3530312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530312/720201.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530312/720201.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530312/ERR3530312_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530312/ERR3530312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530312/720201.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530312/720201.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 148791398;154705104 ERS3756076 ERX3549053 GENOMIC 472015308 2019-09-19 720201 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530312/720201.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530312/720201.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530312 720201 ERR3530311 756672 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530311 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530311 9308ce9daedd5a8c107528c6f740018e;a1f56ecfe092b993341d7339c51b3676 1313 121761200 e4379eb6f7aa098cb021f7a2b8ec7ac2;e945530e01cef0fa864690f01b6eca9c SAMEA5785606 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530311/ERR3530311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530311/ERR3530311_2.fastq.gz 1320710 WGS 756672 RANDOM 88295409;89949433 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 93bc6d9a26022fbc48445d5fcd1eb081 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530311/ERR3530311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530311/ERR3530311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530311/756672.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530311/756672.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530311/ERR3530311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530311/ERR3530311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530311/756672.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530311/756672.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84976757;86603703 ERS3755749 ERX3548726 GENOMIC 261415594 2019-09-19 756672 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530311/756672.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530311/756672.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530311 756672 ERR3530314 308577 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530314 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530314 9de2295f09632c3432510e80c43faaf4;f9502730df94cab69a637afb3d85834b 1313 162705355 cf9f6ad169d654cb0d72a37817699427;6ad0333f55b83bcff149f8b92870d00b SAMEA5786210 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530314/ERR3530314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530314/ERR3530314_2.fastq.gz 1797297 WGS 308577 RANDOM 118544628;120591681 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ac2f40e35a3b145987524e5b2bf698de ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530314/ERR3530314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530314/ERR3530314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530314/308577.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530314/308577.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530314/ERR3530314_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530314/ERR3530314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530314/308577.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530314/308577.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113796529;115831267 ERS3756352 ERX3549329 GENOMIC 355942989 2019-09-19 308577 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530314/308577.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530314/308577.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530314 308577 ERR3530313 311483 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530313 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530313 53c498774c01cd990c7a14fa52ac14f1;1c9590cb95f9c79eea90adfae18efd72 1313 206830550 41ab086c221d23a34c6c2efda3abe9a3;66ad0089f56ceab27428df4af410cf5a SAMEA5786141 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530313/ERR3530313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530313/ERR3530313_2.fastq.gz 2310867 WGS 311483 RANDOM 150537296;151664918 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7ac5914575a492d7cb4012ed2ba100d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530313/ERR3530313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530313/ERR3530313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530313/311483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530313/311483.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530313/ERR3530313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530313/ERR3530313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530313/311483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530313/311483.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 144443456;145589245 ERS3756283 ERX3549260 GENOMIC 453203358 2019-09-19 311483 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530313/311483.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530313/311483.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530313 311483 ERR3530315 311490 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530315 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530315 a5e628b3026a90931f5134b448063da1;7b4b3e24a60ee6fcc6397967377d5d81 1313 201170923 8fb232866078fa1f1284e4073371cc8e;841402794b716f30e3a00daff0679f38 SAMEA5786134 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530315/ERR3530315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530315/ERR3530315_2.fastq.gz 2258715 WGS 311490 RANDOM 146410424;147822340 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2ac55281a8f0d6666845621273da4de6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530315/ERR3530315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530315/ERR3530315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530315/311490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530315/311490.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530315/ERR3530315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530315/ERR3530315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530315/311490.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530315/311490.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140422123;141840123 ERS3756276 ERX3549253 GENOMIC 442893731 2019-09-19 311490 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530315/311490.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530315/311490.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530315 311490 ERR3530316 717981 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530316 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530316 a4d97c9ee7d244ce73a404a8ca31094e;2954127b619a701b0f54e712d605348f 1313 106211135 973ca0a12ae6bc7fd13fc27849b74ed6;d1219b93df0625637d931e0d3a7876d6 SAMEA5785961 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530316/ERR3530316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530316/ERR3530316_2.fastq.gz 1227347 WGS 717981 RANDOM 77727868;79612395 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c49ef9afa21344221571098ba96ade6b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530316/ERR3530316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530316/ERR3530316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530316/717981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530316/717981.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530316/ERR3530316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530316/ERR3530316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530316/717981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530316/717981.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74592959;76469998 ERS3756103 ERX3549080 GENOMIC 242984262 2019-09-19 717981 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530316/717981.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530316/717981.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530316 717981 ERR3530317 308640 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530317 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530317 220bd106f2ed0e56ba2cc54ad94eb11f;7b7b421b7ec3e03e1b0bbef08986ee0a 1313 180282191 f7b5922cf981029a886c6bbe546c9ab5;14c508b123cae8272c5e6c36cc98095d SAMEA5786154 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530317/ERR3530317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530317/ERR3530317_2.fastq.gz 1979361 WGS 308640 RANDOM 130684237;133423924 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fc9aad0399c59b9e2b2348462fdd53a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530317/ERR3530317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530317/ERR3530317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530317/308640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530317/308640.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530317/ERR3530317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530317/ERR3530317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530317/308640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530317/308640.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125468353;128193137 ERS3756296 ERX3549273 GENOMIC 391045001 2019-09-19 308640 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530317/308640.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530317/308640.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530317 308640 ERR3530319 756681 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530319 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530319 ae07a14bfd64da21549c9246d8956285;802cf5689f486594caa87281c4fda514 1313 168784773 9407d5e2c2b7f9c098a4cda64590b2bc;91d250108632a3d5d5a65171c99eba65 SAMEA5785597 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530319/ERR3530319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530319/ERR3530319_2.fastq.gz 1800870 WGS 756681 RANDOM 121260046;125171182 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ae06203f7fc6f0cedfdb0f96455ac219 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530319/ERR3530319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530319/ERR3530319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530319/756681.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530319/756681.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530319/ERR3530319_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530319/ERR3530319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530319/756681.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530319/756681.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116525716;120363166 ERS3755740 ERX3548717 GENOMIC 358550015 2019-09-19 756681 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530319/756681.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530319/756681.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530319 756681 ERR3530318 760601 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530318 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530318 8f97e881f4d6ce3bc6c0c65d0b2202d9;fc6b3d1e2124bee66079ad6b66884afc 1313 187133150 e528705b3db61b35e649066f8c000f1a;4e7e3eff142b5117f5020f105b322e05 SAMEA5785436 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530318/ERR3530318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530318/ERR3530318_2.fastq.gz 2047954 WGS 760601 RANDOM 136307733;138493664 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 941c81abeadf5bb1efe96a4c45c3bf15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530318/ERR3530318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530318/ERR3530318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530318/760601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530318/760601.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530318/ERR3530318_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530318/ERR3530318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530318/760601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530318/760601.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130948486;133112255 ERS3755579 ERX3548556 GENOMIC 407038355 2019-09-19 760601 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530318/760601.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530318/760601.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530318 760601 ERR3530320 300850 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530320 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530320 3ff8a474affe740a8a41d143319395c6;d8a9ae7dd716e28faeae672c2e0d4cae 1313 94510287 4ac969a466d94f596a55fc9f253306df;030e3ccf956bcbcedd8bac08e2504478 SAMEA5786290 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530320/ERR3530320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530320/ERR3530320_2.fastq.gz 1112984 WGS 300850 RANDOM 68655292;69415117 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a4381522209b45667fd3eab7626573c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530320/ERR3530320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530320/ERR3530320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530320/300850.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530320/300850.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530320/ERR3530320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530320/ERR3530320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530320/300850.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530320/300850.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 65967455;66707161 ERS3756432 ERX3549409 GENOMIC 218456543 2019-09-19 300850 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530320/300850.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530320/300850.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530320 300850 ERR3530321 651033 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530321 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530321 fd331b5617896329c8d46e8afd949c5c;3ae8e5cad4b8da1a57f61d15626af0b1 1313 167595281 58b13515c6f510855a7f330a83e5b601;212acd7039cafc480de2888e9f2a8c76 SAMEA5786115 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530321/ERR3530321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530321/ERR3530321_2.fastq.gz 1845439 WGS 651033 RANDOM 121410562;125239468 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. feeb392e2b18440ae98cac55b5d97c66 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530321/ERR3530321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530321/ERR3530321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530321/651033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530321/651033.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530321/ERR3530321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530321/ERR3530321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530321/651033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530321/651033.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116553585;120373141 ERS3756257 ERX3549234 GENOMIC 368350693 2019-09-19 651033 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530321/651033.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530321/651033.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530321 651033 ERR3530322 717966 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530322 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530322 1bf2512d944ab4dfba1610f1c43bd695;b745c97931241e0d9861f88deca0848e 1313 123117705 db5eb73dd142e3da5701f892a17cd761;1f1c50e47d28da6136e519b38c85d85e SAMEA5785975 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530322/ERR3530322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530322/ERR3530322_2.fastq.gz 1449224 WGS 717966 RANDOM 90239250;93303488 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d53a7c1dead31d10368f3fadd394ebca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530322/ERR3530322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530322/ERR3530322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530322/717966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530322/717966.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530322/ERR3530322_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530322/ERR3530322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530322/717966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530322/717966.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86467300;89519300 ERS3756117 ERX3549094 GENOMIC 289475304 2019-09-19 717966 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530322/717966.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530322/717966.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530322 717966 ERR3530324 753492 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530324 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530324 1737eb3322dea40b862f8e0ae457100c;91a1deec90df3b430d9eb8c13981b0ce 1313 131282716 073bdc87dfb573d4010e077ec6c2ffa8;f53cedeea04ecd6d9510a271154d5482 SAMEA5785700 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530324/ERR3530324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530324/ERR3530324_2.fastq.gz 1458830 WGS 753492 RANDOM 96345964;96586324 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d7279f75a099ce35174626c411da5100 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530324/ERR3530324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530324/ERR3530324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530324/753492.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530324/753492.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530324/ERR3530324_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530324/ERR3530324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530324/753492.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530324/753492.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92562600;92808832 ERS3755843 ERX3548820 GENOMIC 288956427 2019-09-19 753492 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530324/753492.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530324/753492.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530324 753492 ERR3530323 760589 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530323 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530323 067f0c82d49e90e16ab9ba8663d55bc5;693050ccd8afe705f6330b65c7cf86fe 1313 177590363 d5a89ec914e1bec55ad1cbd01b7f8338;9937f3b071cdbeb432e7c7f77e6bd069 SAMEA5785448 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530323/ERR3530323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530323/ERR3530323_2.fastq.gz 1913180 WGS 760589 RANDOM 127411441;132546371 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 950e9c276e1c127ad54de1918bcb07c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530323/ERR3530323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530323/ERR3530323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530323/760589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530323/760589.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530323/ERR3530323_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530323/ERR3530323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530323/760589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530323/760589.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122372452;127457187 ERS3755591 ERX3548568 GENOMIC 381534594 2019-09-19 760589 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530323/760589.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530323/760589.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530323 760589 ERR3530325 760596 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530325 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530325 8d477ac70484140862d6bebec9982db9;5624621720204cf1a11bf0a4b5724727 1313 155919631 a75672e9baa5c16c46ca252068973105;d18e4787e19767012e90eb1f1f2e7683 SAMEA5785441 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530325/ERR3530325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530325/ERR3530325_2.fastq.gz 1698681 WGS 760596 RANDOM 113350336;115636410 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d18924b689457167c54448e8e0fc985a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530325/ERR3530325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530325/ERR3530325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530325/760596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530325/760596.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530325/ERR3530325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530325/ERR3530325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530325/760596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530325/760596.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 108907264;111166317 ERS3755584 ERX3548561 GENOMIC 338020216 2019-09-19 760596 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530325/760596.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530325/760596.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530325 760596 ERR3530326 720957 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530326 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530326 9071dfecfd0da331d3aadbceb4a7475a;cec48b067f3cef95d2e13c744e433175 1313 164991255 0806156a6c70b4faa5989a2a6c0f838d;b7c182799d373363d11b6c0c51b07b08 SAMEA5785851 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530326/ERR3530326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530326/ERR3530326_2.fastq.gz 1704308 WGS 720957 RANDOM 118309816;120143353 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2370c5716a8cc76c6ef3de04572e56a6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530326/ERR3530326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530326/ERR3530326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530326/720957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530326/720957.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530326/ERR3530326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530326/ERR3530326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530326/720957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530326/720957.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113834825;115627144 ERS3755994 ERX3548971 GENOMIC 337788218 2019-09-19 720957 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530326/720957.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530326/720957.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530326 720957 ERR3530327 304285 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530327 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530327 81d59e45c1e1bb6d8cb1ec3fded130ed;bc921e949cdbb922810609c75c4bfe41 1313 148575741 4847b69095408f0fabdfacc6805590e1;c5d1f8afd849fec209af9bdec61a6c23 SAMEA5786241 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530327/ERR3530327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530327/ERR3530327_2.fastq.gz 1724568 WGS 304285 RANDOM 109233413;111070489 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d891c977bed1ca75e7866672d73e082e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530327/ERR3530327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530327/ERR3530327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530327/304285.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530327/304285.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530327/ERR3530327_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530327/ERR3530327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530327/304285.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530327/304285.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104719157;106548294 ERS3756383 ERX3549360 GENOMIC 342652715 2019-09-19 304285 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530327/304285.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530327/304285.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530327 304285 ERR3530328 720988 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530328 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530328 faa361aaffc83fbb69801908e20ec2f7;5a94368ecabbc692a0f933026c3d28a0 1313 138888607 c9c73167b462165961c8071ac1c9923b;350e0f4985d760ba9da281c85d0c3f05 SAMEA5785820 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530328/ERR3530328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530328/ERR3530328_2.fastq.gz 1450352 WGS 720988 RANDOM 98901704;100451822 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 61602dc6bf532ae63c4928f00ad7c709 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530328/ERR3530328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530328/ERR3530328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530328/720988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530328/720988.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530328/ERR3530328_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530328/ERR3530328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530328/720988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530328/720988.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 95167991;96694095 ERS3755963 ERX3548940 GENOMIC 285768146 2019-09-19 720988 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530328/720988.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530328/720988.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530328 720988 ERR3530329 717854 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530329 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530329 519dd876d0cd75a618a59c70963bcea9;00624d1ed67b4781968c9f5e40612e2c 1313 121570813 7123aa91728b0f868d43d05c6fe6cfc2;99dc27e79aaa1a31571a427be0e67e7c SAMEA5786043 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530329/ERR3530329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530329/ERR3530329_2.fastq.gz 1425141 WGS 717854 RANDOM 87813607;92702659 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8b87e6cc68f9fb8dcbe72af3c51e813b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530329/ERR3530329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530329/ERR3530329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530329/717854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530329/717854.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530329/ERR3530329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530329/ERR3530329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530329/717854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530329/717854.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84190712;89066769 ERS3756185 ERX3549162 GENOMIC 283553840 2019-09-19 717854 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530329/717854.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530329/717854.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530329 717854 ERR3530330 720942 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530330 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530330 e148878a5a512043e75260ead55aabd7;0579b4c6da65a66908f9bfde46e24f06 1313 198707936 6e7fbf8aecae0b36c01e7a4da06dd84c;d0c7d499d77c4d7f1e2b0f6d37d582b4 SAMEA5785866 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530330/ERR3530330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530330/ERR3530330_2.fastq.gz 2054351 WGS 720942 RANDOM 140851740;145648355 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c98434b0d84bf722ee826e8e20038ce0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530330/ERR3530330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530330/ERR3530330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530330/720942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530330/720942.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530330/ERR3530330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530330/ERR3530330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530330/720942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530330/720942.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135479843;140201288 ERS3756009 ERX3548986 GENOMIC 406067360 2019-09-19 720942 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530330/720942.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530330/720942.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530330 720942 ERR3530331 308603 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530331 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530331 e7375389402dd85f9b0c39ce07c1bb2a;565215ef112c804b9891652f92e43e2d 1313 246011712 248b2e3163b99169539b31dbf74a3049;848b68cf76eae3aaba0cd2de5ce9b333 SAMEA5786187 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530331/ERR3530331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530331/ERR3530331_2.fastq.gz 2689242 WGS 308603 RANDOM 177375021;181631822 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 00d9334d3df3de3e60a1c7930cfa4875 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530331/ERR3530331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530331/ERR3530331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530331/308603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530331/308603.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530331/ERR3530331_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530331/ERR3530331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530331/308603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530331/308603.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 170392731;174627714 ERS3756329 ERX3549306 GENOMIC 532903520 2019-09-19 308603 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530331/308603.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530331/308603.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530331 308603 ERR3530396 720232 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530396 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530396 c2ff5038f70404b689d1f79f70d18cff;330374d53f7074ad8f1e5240c2ef4d53 1313 185781076 b5e747fdf8cbbdb3a8d06b72963bb925;dddaf1685a3a70b8527faecaeea642fd SAMEA5785902 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530396/ERR3530396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530396/ERR3530396_2.fastq.gz 2037718 WGS 720232 RANDOM 133323226;138166890 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cd0e98857cfad448849c493f9060e567 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530396/ERR3530396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530396/ERR3530396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530396/720232.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530396/720232.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530396/ERR3530396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530396/ERR3530396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530396/720232.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530396/720232.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127878875;132692784 ERS3756045 ERX3549022 GENOMIC 405100067 2019-09-19 720232 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530396/720232.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530396/720232.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530396 720232 ERR3530333 720966 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530333 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530333 f629909929b93a3a4b6a148232aa0683;993a527aff5969b8e56cdf46e3727eef 1313 170526813 66ff30e2f8358208f662ee82bb103d02;3fdcb3467540729d18b78065a3766842 SAMEA5785842 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530333/ERR3530333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530333/ERR3530333_2.fastq.gz 1781605 WGS 720966 RANDOM 123091329;124396830 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9c016d8b6bd8c3a280d6053b0f2d5997 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530333/ERR3530333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530333/ERR3530333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530333/720966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530333/720966.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530333/ERR3530333_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530333/ERR3530333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530333/720966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530333/720966.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118382524;119660096 ERS3755985 ERX3548962 GENOMIC 353828138 2019-09-19 720966 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530333/720966.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530333/720966.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530333 720966 ERR3530334 717945 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530334 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530334 13a63727c53eec7e3d9dd8ba38f600c0;957883b94025126cb88856908ac415c2 1313 151187350 f551c84e2a3378de76571958c8be28d1;0a9a55048010ad677f88e75a3a25049e SAMEA5785995 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530334/ERR3530334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530334/ERR3530334_2.fastq.gz 1756882 WGS 717945 RANDOM 110600996;113779506 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b693dfb5b512503da4cf893f506e59f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530334/ERR3530334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530334/ERR3530334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530334/717945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530334/717945.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530334/ERR3530334_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530334/ERR3530334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530334/717945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530334/717945.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105924981;109092883 ERS3756137 ERX3549114 GENOMIC 349359732 2019-09-19 717945 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530334/717945.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530334/717945.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530334 717945 ERR3530339 717846 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530339 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530339 6cb13dc97f9f8e0882eadc4c0f983399;55be31eebac12d1408c74e7f8c93a637 1313 153581436 8e9aec5a6f4a40f1673c2ce274e9008f;710de77525f61f2ed48ebb336ab9151a SAMEA5786046 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530339/ERR3530339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530339/ERR3530339_2.fastq.gz 1816198 WGS 717846 RANDOM 111535529;116970511 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5727e17185d16a5452abaaa0a9174274 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530339/ERR3530339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530339/ERR3530339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530339/717846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530339/717846.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530339/ERR3530339_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530339/ERR3530339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530339/717846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530339/717846.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106739908;112173575 ERS3756188 ERX3549165 GENOMIC 358669606 2019-09-19 717846 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530339/717846.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530339/717846.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530339 717846 ERR3530336 717989 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530336 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530336 52dc0703ccb24473d43e9c1ef8e52987;695260ad10d9b525b5d2030dad0224aa 1313 123639515 6737570fff4ad9a995f1da64ebb8dbbb;75a8d21cb6b70fdc0d6ac31acdc83669 SAMEA5785955 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530336/ERR3530336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530336/ERR3530336_2.fastq.gz 1444154 WGS 717989 RANDOM 90964752;92587539 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8a4ab815bc520ce73a0a6538dce2081f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530336/ERR3530336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530336/ERR3530336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530336/717989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530336/717989.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530336/ERR3530336_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530336/ERR3530336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530336/717989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530336/717989.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87214170;88819751 ERS3756097 ERX3549074 GENOMIC 285777947 2019-09-19 717989 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530336/717989.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530336/717989.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530336 717989 ERR3530335 667372 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530335 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530335 9bf479df14f58ef6d64cbebe70208525;6fa625291362775ffd23d6fdb1e3529c 1313 132940021 90337963b212d9cc5301a34775efa6d7;e5a18b0d502402b8f31bfe7e7ee9d68e SAMEA5786066 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530335/ERR3530335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530335/ERR3530335_2.fastq.gz 1375593 WGS 667372 RANDOM 92790751;98760419 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0f9f30284e603e0164f2c143dab312ee ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530335/ERR3530335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530335/ERR3530335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530335/667372.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530335/667372.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530335/ERR3530335_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530335/ERR3530335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530335/667372.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530335/667372.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89342962;95179511 ERS3756208 ERX3549185 GENOMIC 273186460 2019-09-19 667372 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530335/667372.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530335/667372.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530335 667372 ERR3530338 300874 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530338 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530338 562326a76dd785df3623495e8ecc0c51;c8cbcca437abf5697f857785f7d1fc62 1313 140129862 c38a6b37624aaababdcc0ad7530d6dc0;6bac45734675e36702d1372d5851c865 SAMEA5786268 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530338/ERR3530338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530338/ERR3530338_2.fastq.gz 1656693 WGS 300874 RANDOM 101659344;103230181 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8f60bfb8a30f3ef4d2256acafecb9630 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530338/ERR3530338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530338/ERR3530338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530338/300874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530338/300874.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530338/ERR3530338_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530338/ERR3530338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530338/300874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530338/300874.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97479691;99027989 ERS3756410 ERX3549387 GENOMIC 327155496 2019-09-19 300874 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530338/300874.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530338/300874.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530338 300874 ERR3530337 304259 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530337 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530337 57470180ef6ae963868643f85efd9e9b;6e1e9620d5c4627b5c6f7e782c2b5076 1313 151790863 06fbacf81bcf98fcd54041f054643376;ddfcdca61c641b494c1379e12807e968 SAMEA5786264 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530337/ERR3530337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530337/ERR3530337_2.fastq.gz 1756590 WGS 304259 RANDOM 111523698;113223075 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fb219d95f30de9d43963e48e2b547190 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530337/ERR3530337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530337/ERR3530337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530337/304259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530337/304259.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530337/ERR3530337_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530337/ERR3530337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530337/304259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530337/304259.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106887475;108577789 ERS3756406 ERX3549383 GENOMIC 347104879 2019-09-19 304259 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530337/304259.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530337/304259.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530337 304259 ERR3530340 756601 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530340 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530340 3bad1dc09ba075797f65c11b7c163692;64a34d7d2a17a5fdfd02597523ccece1 1313 166478431 f9618cd08cba27bf8be09ee5a39f4aa4;83b4a27e599aff45e29cd03b07887a59 SAMEA5785676 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530340/ERR3530340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530340/ERR3530340_2.fastq.gz 1779936 WGS 756601 RANDOM 119506830;123773062 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3bc61efad4bd847859685f593bdc5f8d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530340/ERR3530340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530340/ERR3530340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530340/756601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530340/756601.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530340/ERR3530340_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530340/ERR3530340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530340/756601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530340/756601.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114853318;119052113 ERS3755819 ERX3548796 GENOMIC 354742810 2019-09-19 756601 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530340/756601.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530340/756601.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530340 756601 ERR3530344 760600 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530344 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530344 a10388890e31ecb9e09d71fa6d301dc7;31d8101e1dec9948b096f46529e6c2bd 1313 164820271 8c23f30972424dc12cab0ffb2be8ebc3;d53b418a2be12216a93b5ffd0c139b89 SAMEA5785437 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530344/ERR3530344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530344/ERR3530344_2.fastq.gz 1798431 WGS 760600 RANDOM 119681548;122647989 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f26e20b985b79ee74baa5fbd75d8df31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530344/ERR3530344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530344/ERR3530344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530344/760600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530344/760600.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530344/ERR3530344_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530344/ERR3530344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530344/760600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530344/760600.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114994035;117941469 ERS3755580 ERX3548557 GENOMIC 359027535 2019-09-19 760600 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530344/760600.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530344/760600.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530344 760600 ERR3530342 753421 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530342 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530342 666052895b3fcbebbe4324e4f59bb303;59e85a2f58bd8951ee5bc525628d08eb 1313 104569595 dcf2c80fdcbdfdac20dcc9dc9d17568c;6653f5e07e3ead107b761c30a390c2b5 SAMEA5785769 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530342/ERR3530342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530342/ERR3530342_2.fastq.gz 1146238 WGS 753421 RANDOM 75239175;77912910 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 48a7fbc20288a6213dac158b78a23503 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530342/ERR3530342_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530342/ERR3530342_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530342/753421.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530342/753421.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530342/ERR3530342_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530342/ERR3530342_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530342/753421.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530342/753421.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 72328460;75007060 ERS3755912 ERX3548889 GENOMIC 227690237 2019-09-19 753421 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530342/753421.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530342/753421.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530342 753421 ERR3530341 304273 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530341 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530341 db9a078237b8c134c5bfa17621d6bd68;9ba4fcc702213f686e2031d1bd4dfbcf 1313 190565747 e75828be55f1e99a3ee83a4b39538f28;7f44b28c3c318b800b05bd4a15733932 SAMEA5786251 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530341/ERR3530341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530341/ERR3530341_2.fastq.gz 2212486 WGS 304273 RANDOM 139838372;141688469 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4f142b39619a616791d2576672efcbf2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530341/ERR3530341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530341/ERR3530341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530341/304273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530341/304273.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530341/ERR3530341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530341/ERR3530341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530341/304273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530341/304273.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 134064630;135899378 ERS3756393 ERX3549370 GENOMIC 438144515 2019-09-19 304273 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530341/304273.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530341/304273.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530341 304273 ERR3530343 756657 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530343 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530343 0263eb6e3e3b154bc53dfb3adcc3b582;81a1ffb3d915207bf862a9a736a39842 1313 139126071 52bf6c83b17486b7b1a3fcd517b3ff87;7dd445aacea46b817761b3a591ed54f4 SAMEA5785621 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530343/ERR3530343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530343/ERR3530343_2.fastq.gz 1497000 WGS 756657 RANDOM 100813183;102838312 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2e9c98bcce9826cca4ec648feae98027 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530343/ERR3530343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530343/ERR3530343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530343/756657.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530343/756657.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530343/ERR3530343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530343/ERR3530343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530343/756657.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530343/756657.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 96936302;98920914 ERS3755764 ERX3548741 GENOMIC 297725812 2019-09-19 756657 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530343/756657.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530343/756657.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530343 756657 ERR3530345 720216 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530345 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530345 f190f99eb336ddf062c0c3a24ca32c60;8e121d5b958417ff64a6b61fa7a9d4d2 1313 66523819 681f61112b27a33e8d382065127a4307;c4edc7bfd55505dae4581a226ea85360 SAMEA5785919 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530345/ERR3530345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530345/ERR3530345_2.fastq.gz 739159 WGS 720216 RANDOM 48351608;49383661 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f9438130dea177cba93a23e199db48cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530345/ERR3530345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530345/ERR3530345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530345/720216.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530345/720216.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530345/ERR3530345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530345/ERR3530345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530345/720216.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530345/720216.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 46485023;47512475 ERS3756061 ERX3549038 GENOMIC 145656065 2019-09-19 720216 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530345/720216.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530345/720216.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530345 720216 ERR3530349 318631 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530349 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530349 a3801dd5d2f8862e22cb03e6142bf599;7fef21c837fc271a6cbb14dab900e3bd 1313 198166232 91b7d9e676f0a3687d7d49829a383427;d97d46b66f2c7515676d70580d31a8b6 SAMEA5786128 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530349/ERR3530349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530349/ERR3530349_2.fastq.gz 2076630 WGS 318631 RANDOM 141389975;144211589 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 43ae588924141de0a0bdf30399c44f2d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530349/ERR3530349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530349/ERR3530349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530349/318631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530349/318631.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530349/ERR3530349_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530349/ERR3530349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530349/318631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530349/318631.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135894264;138697470 ERS3756270 ERX3549247 GENOMIC 406696325 2019-09-19 318631 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530349/318631.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530349/318631.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530349 318631 ERR3530348 757967 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530348 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530348 11b08bfa73e6710fe27b8fe3a15b82b9;95c80f5601aff95e960c525f3b9d2867 1313 40606447 7e50245a97b9036ad2bd2db273cb975c;76725289099d8635b1fbe6b8dbf630ed SAMEA5785563 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530348/ERR3530348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530348/ERR3530348_2.fastq.gz 484059 WGS 757967 RANDOM 30072991;30812736 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b99492dfbb424a91cd4883afcd344a78 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530348/ERR3530348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530348/ERR3530348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530348/757967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530348/757967.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530348/ERR3530348_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530348/ERR3530348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530348/757967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530348/757967.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 28867632;29601378 ERS3755706 ERX3548683 GENOMIC 96432969 2019-09-19 757967 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530348/757967.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530348/757967.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530348 757967 ERR3530346 721000 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530346 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530346 33bc2d6abbf8eef74ad556ea8e844f1e;ac07f4f5c5d7998733469ee392fdbd1b 1313 403191503 237cd029b17e0a2af86d8ec11236a0dc;27d4cfd18ed192c9a97c600bf2dd71f9 SAMEA5785809 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530346/ERR3530346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530346/ERR3530346_2.fastq.gz 4242841 WGS 721000 RANDOM 292096568;293063404 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7e62beaf3f9f2be64a9182828d8fe5a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530346/ERR3530346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530346/ERR3530346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530346/721000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530346/721000.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530346/ERR3530346_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530346/ERR3530346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530346/721000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530346/721000.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 279913854;280871771 ERS3755952 ERX3548929 GENOMIC 837543769 2019-09-19 721000 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530346/721000.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530346/721000.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530346 721000 ERR3530347 720218 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530347 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530347 218dacd105bfa6a1d5de964287d1f3ec;4df20daeedbe9e94b8ba8fefc17a6849 1313 182058860 4be9c72ffcd13740afd7a2f28bf046d4;240fba824b39d24386cf8f8b6f440951 SAMEA5785916 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530347/ERR3530347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530347/ERR3530347_2.fastq.gz 2057126 WGS 720218 RANDOM 133564315;134153595 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e431e6ad7ea5af319eae93c6509e9d3c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530347/ERR3530347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530347/ERR3530347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530347/720218.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530347/720218.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530347/ERR3530347_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530347/ERR3530347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530347/720218.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530347/720218.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 128127027;128714574 ERS3756059 ERX3549036 GENOMIC 406175398 2019-09-19 720218 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530347/720218.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530347/720218.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530347 720218 ERR3530350 717844 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530350 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530350 35b5f5ccd4f575e0143cca2afacf428c;2d346cff8e05e947a670d0df5c5b7bf7 1313 150207904 005aeb95ebfe5ef43832f5a5cb678ae2;578879dc6d9053555bb12796de8ad573 SAMEA5786047 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530350/ERR3530350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530350/ERR3530350_2.fastq.gz 1778668 WGS 717844 RANDOM 110648701;113333517 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e1d84b7fb7d7d7d93a08ad9e628adc78 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530350/ERR3530350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530350/ERR3530350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530350/717844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530350/717844.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530350/ERR3530350_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530350/ERR3530350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530350/717844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530350/717844.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105870248;108553109 ERS3756189 ERX3549166 GENOMIC 353666630 2019-09-19 717844 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530350/717844.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530350/717844.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530350 717844 ERR3530352 757955 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530352 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530352 47e586024708a77056c90d6d3d4fc21c;21fd2001cc98c377677cebb1d8950ed5 1313 81992703 e53160f59a99d50731f7c244cc1f485c;3ff03ff4ee96b8c9acad03e616dc1e28 SAMEA5785575 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530352/ERR3530352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530352/ERR3530352_2.fastq.gz 968204 WGS 757955 RANDOM 58616584;63596930 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 64d28c213d0f9315d19abaef80643c43 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530352/ERR3530352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530352/ERR3530352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530352/757955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530352/757955.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530352/ERR3530352_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530352/ERR3530352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530352/757955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530352/757955.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56146206;61121733 ERS3755718 ERX3548695 GENOMIC 192740126 2019-09-19 757955 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530352/757955.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530352/757955.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530352 757955 ERR3530351 670263 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530351 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530351 48ce1bd2d7ac7a8bc6dda45bbb68cba0;1116501730b118e7a1722d50c421f264 1313 187239803 a54707cb85687c8325efac425b5d909a;0872d2076dece02b681723ede4b7355c SAMEA5786060 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530351/ERR3530351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530351/ERR3530351_2.fastq.gz 2186435 WGS 670263 RANDOM 136924628;140660156 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 190cc79283ec633efa305abfc9002fe5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530351/ERR3530351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530351/ERR3530351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530351/670263.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530351/670263.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530351/ERR3530351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530351/ERR3530351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530351/670263.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530351/670263.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 131196395;134936145 ERS3756202 ERX3549179 GENOMIC 434243913 2019-09-19 670263 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530351/670263.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530351/670263.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530351 670263 ERR3530354 717908 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530354 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530354 3740550ea20c76e2563ccaec15642d7a;dedb5c781bd206f8933259aab71be311 1313 121199705 71eeccb9f38a7c86d55288896a4acca4;02f94a8c01341d613b099c730f0f6c0a SAMEA5786019 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530354/ERR3530354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530354/ERR3530354_2.fastq.gz 1454434 WGS 717908 RANDOM 90252316;91046089 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 354cfce94a42bf33855f5da735ebd3a3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530354/ERR3530354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530354/ERR3530354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530354/717908.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530354/717908.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530354/ERR3530354_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530354/ERR3530354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530354/717908.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530354/717908.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86467971;87251938 ERS3756161 ERX3549138 GENOMIC 289377560 2019-09-19 717908 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530354/717908.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530354/717908.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530354 717908 ERR3530353 720204 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530353 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530353 7444e447e4fb4500bd8b57db82d4ba2f;bbdbc5e77c182a85d9d2ec4ba568bc6b 1313 145510884 bd60b7674e2558d1021a721c20675b02;af1fda4e3325ce3d68015c5ca91318f0 SAMEA5785931 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530353/ERR3530353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530353/ERR3530353_2.fastq.gz 1582890 WGS 720204 RANDOM 102541691;109315362 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d8a4b98538ebbee492957d2d6108d6db ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530353/ERR3530353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530353/ERR3530353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530353/720204.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530353/720204.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530353/ERR3530353_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530353/ERR3530353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530353/720204.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530353/720204.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98387504;105121185 ERS3756073 ERX3549050 GENOMIC 313524131 2019-09-19 720204 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530353/720204.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530353/720204.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530353 720204 ERR3530355 300842 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530355 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530355 46a363c1ac1c4a5b386679eef2134e04;1a71e2e8c8ed3cb80415e9b8857e8a6d 1313 185660623 c74c6fffbc870689e4824d5c86a73013;c83fa4b14796a6b5804f77ae1951ba22 SAMEA5786297 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530355/ERR3530355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530355/ERR3530355_2.fastq.gz 2199401 WGS 300842 RANDOM 134520064;136140384 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a7599e78d3d9cdb638d6524456800bb6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530355/ERR3530355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530355/ERR3530355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530355/300842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530355/300842.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530355/ERR3530355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530355/ERR3530355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530355/300842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530355/300842.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129033717;130631341 ERS3756439 ERX3549416 GENOMIC 432033957 2019-09-19 300842 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530355/300842.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530355/300842.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530355 300842 ERR3530356 759525 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530356 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530356 2faf1b6b4a0c1cfd6a95be653424628f;cd32d7973b8b793766185f750ed52777 1313 123400355 8c0f1730b2d3f50f7d85dcc87591e340;f143ffda3af6283c75196762db029a29 SAMEA5785482 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530356/ERR3530356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530356/ERR3530356_2.fastq.gz 1452896 WGS 759525 RANDOM 90728938;93073415 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2991ca6d12cac3ea22828c48bf443a56 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530356/ERR3530356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530356/ERR3530356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530356/759525.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530356/759525.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530356/ERR3530356_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530356/ERR3530356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530356/759525.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530356/759525.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86998026;89330806 ERS3755625 ERX3548602 GENOMIC 289661091 2019-09-19 759525 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530356/759525.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530356/759525.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530356 759525 ERR3530357 304274 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530357 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530357 d3c3715fa6a1fb5a55fc6f1982bcb8f6;0099b4f247fa892153720782bb190596 1313 92973827 27e30a809544430900511721d9e1eb7d;402d44100b4c6447bb67df79aa2dfa45 SAMEA5786250 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530357/ERR3530357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530357/ERR3530357_2.fastq.gz 1057193 WGS 304274 RANDOM 67900604;69595751 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 94f215d22ea260aa87a1a9b0c31ebe70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530357/ERR3530357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530357/ERR3530357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530357/304274.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530357/304274.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530357/ERR3530357_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530357/ERR3530357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530357/304274.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530357/304274.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 65263926;66945728 ERS3756392 ERX3549369 GENOMIC 210410309 2019-09-19 304274 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530357/304274.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530357/304274.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530357 304274 ERR3530358 304295 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530358 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530358 c38dd185819c45871f913b234be4ef0e;f19a89095796b4a125a551f223fcf337 1313 193805209 b7a89bb2aaf2af8b2278e4440712bc40;ce66655585ca7f709a2c10afe00c9cfb SAMEA5786233 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530358/ERR3530358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530358/ERR3530358_2.fastq.gz 2263521 WGS 304295 RANDOM 142177932;144896921 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f29ecd85cbbecf594e53c2e833c3665a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530358/ERR3530358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530358/ERR3530358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530358/304295.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530358/304295.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530358/ERR3530358_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530358/ERR3530358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530358/304295.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530358/304295.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136316999;139030073 ERS3756375 ERX3549352 GENOMIC 449719312 2019-09-19 304295 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530358/304295.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530358/304295.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530358 304295 ERR3530359 311485 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530359 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530359 c842b9a513c496bbb0d65583059a8909;ee154e2db27c10150e39abdf04c041ee 1313 201447536 a350fc8ee30f66f03f00b7d64e1a120f;60a893179db27e970d3fcee79d62f7ee SAMEA5786139 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530359/ERR3530359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530359/ERR3530359_2.fastq.gz 2263763 WGS 311485 RANDOM 147237027;147541909 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3591255095c32f0f4d46f3da9b1a839a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530359/ERR3530359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530359/ERR3530359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530359/311485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530359/311485.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530359/ERR3530359_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530359/ERR3530359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530359/311485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530359/311485.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 141268095;141584508 ERS3756281 ERX3549258 GENOMIC 444889506 2019-09-19 311485 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530359/311485.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530359/311485.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530359 311485 ERR3530360 717957 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530360 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530360 be52673e94d2e8fd81077b983919091b;64a0464a3eca0231717ce463b6f69f04 1313 127837804 2059e88e773e181d19bcba471088373f;e9749804abb38c2ac152894b01ca05ce SAMEA5785983 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530360/ERR3530360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530360/ERR3530360_2.fastq.gz 1482483 WGS 717957 RANDOM 93335742;96080739 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 08b2e5b2f7e85f14d328d524907b4966 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530360/ERR3530360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530360/ERR3530360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530360/717957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530360/717957.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530360/ERR3530360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530360/ERR3530360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530360/717957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530360/717957.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89437899;92171475 ERS3756125 ERX3549102 GENOMIC 293488880 2019-09-19 717957 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530360/717957.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530360/717957.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530360 717957 ERR3530361 308567 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530361 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530361 8e92f0be7c8414b9f6380318b59a5072;347869d10999f06e5784da89653adef6 1313 215172279 50cd7580e5a1724a45fa180a3efd72d9;323e93f2e4e81eb81c7c36ff9477cb6d SAMEA5786220 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530361/ERR3530361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530361/ERR3530361_2.fastq.gz 2376895 WGS 308567 RANDOM 155931469;158731326 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6ffef14bdeb81921d48e08ec963f5a2f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530361/ERR3530361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530361/ERR3530361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530361/308567.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530361/308567.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530361/ERR3530361_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530361/ERR3530361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530361/308567.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530361/308567.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 149798329;152589318 ERS3756362 ERX3549339 GENOMIC 468713147 2019-09-19 308567 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530361/308567.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530361/308567.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530361 308567 ERR3530362 652821 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530362 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530362 4f6a7c6e6109b399049810ca286ae374;85737b5f1485cbfd2e6e98ac73dd9aac 1313 125302535 25d9b5960c6423de9dd6ff2498fd7d75;937c7331e3e2c299e6b1e59c2fbb9202 SAMEA5786102 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530362/ERR3530362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530362/ERR3530362_2.fastq.gz 1420896 WGS 652821 RANDOM 91994370;93643807 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c8fd3a79ccfd18c8bb413b8ce76c907d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530362/ERR3530362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530362/ERR3530362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530362/652821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530362/652821.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530362/ERR3530362_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530362/ERR3530362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530362/652821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530362/652821.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88381363;90025258 ERS3756244 ERX3549221 GENOMIC 283405850 2019-09-19 652821 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530362/652821.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530362/652821.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530362 652821 ERR3530363 720990 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530363 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530363 b24d7add159dad9ae3d26d3f89dbe9ae;0025fcbb691d4bfec7dbc09376f89165 1313 225048324 ef38c78c07d73bc1f06678fcce76535d;d21b37e65d54ea36fe9fe14f5108fe2f SAMEA5785818 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530363/ERR3530363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530363/ERR3530363_2.fastq.gz 2389525 WGS 720990 RANDOM 161265349;163210730 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9e851df46557c046f5c19092df2f17f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530363/ERR3530363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530363/ERR3530363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530363/720990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530363/720990.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530363/ERR3530363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530363/ERR3530363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530363/720990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530363/720990.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 155079650;157009775 ERS3755961 ERX3548938 GENOMIC 459805711 2019-09-19 720990 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530363/720990.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530363/720990.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530363 720990 ERR3530364 721010 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530364 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530364 d7fcb0e5893140776d3baf685b80ef5f;00496a4cad23b25ca92df940ed6cd2b7 1313 82977406 aa428c1bc54d0675549ebffc6e8b9f3f;a10b01deb21d17b6de9234c0290d65c4 SAMEA5785799 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530364/ERR3530364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530364/ERR3530364_2.fastq.gz 879285 WGS 721010 RANDOM 59986526;60464467 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 874d100dd9bbbaee56f1f4b6827aeb73 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530364/ERR3530364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530364/ERR3530364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530364/721010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530364/721010.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530364/ERR3530364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530364/ERR3530364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530364/721010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530364/721010.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57771159;58244987 ERS3755942 ERX3548919 GENOMIC 171652247 2019-09-19 721010 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530364/721010.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530364/721010.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530364 721010 ERR3530365 304288 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530365 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530365 244efce0e33588456dca6a14560de5b1;985d8257c41a0c15f23448ef0d4dc3cd 1313 184394074 9d6f61f6c72fc29db6a06bf3ad3d8bc1;e8a02584d5ce8098c0266af41a1979ea SAMEA5786238 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530365/ERR3530365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530365/ERR3530365_2.fastq.gz 2143120 WGS 304288 RANDOM 135107141;137187914 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 60429a9e94186ca22ad3fd4863a671f9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530365/ERR3530365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530365/ERR3530365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530365/304288.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530365/304288.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530365/ERR3530365_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530365/ERR3530365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530365/304288.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530365/304288.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129503481;131574855 ERS3756380 ERX3549357 GENOMIC 423451789 2019-09-19 304288 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530365/304288.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530365/304288.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530365 304288 ERR3530366 753418 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530366 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530366 58b9800e7b6968227bec4b0b0cd1314f;da2c16688e168f59e291b16dc196e10c 1313 107460734 21f9ba64b3a7a7406093413e495d1db1;448850a469b0b245470d94e5728aa57d SAMEA5785772 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530366/ERR3530366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530366/ERR3530366_2.fastq.gz 1171905 WGS 753418 RANDOM 77013729;80112690 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a16a7c017fdd92f61fd7628d98f1318c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530366/ERR3530366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530366/ERR3530366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530366/753418.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530366/753418.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530366/ERR3530366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530366/ERR3530366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530366/753418.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530366/753418.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74044935;77134449 ERS3755915 ERX3548892 GENOMIC 232843996 2019-09-19 753418 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530366/753418.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530366/753418.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530366 753418 ERR3530367 720986 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530367 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530367 e1ecd5cb74f666b02f781963827a7f99;772d370053b02dbef7a9bb79c6b13e48 1313 171984400 3dec94934db2f4d5efdd719c7dbde097;08fa2426b0735821f9271e973ef68f0f SAMEA5785822 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530367/ERR3530367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530367/ERR3530367_2.fastq.gz 1813519 WGS 720986 RANDOM 124129805;125067388 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 58d365dde858bc8fed48f2d4d7aa89e5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530367/ERR3530367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530367/ERR3530367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530367/720986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530367/720986.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530367/ERR3530367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530367/ERR3530367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530367/720986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530367/720986.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119299459;120225934 ERS3755965 ERX3548942 GENOMIC 353635667 2019-09-19 720986 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530367/720986.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530367/720986.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530367 720986 ERR3530369 720958 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530369 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530369 422c2dc403d1ded748f9d7ab567af41d;4528e6239f5be78f93b573cdd42c4141 1313 117027666 c49fab5f40e0c7e8af2765e53c426ab7;fa07a82aad6b91f02d25a2b575518c56 SAMEA5785850 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530369/ERR3530369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530369/ERR3530369_2.fastq.gz 1220866 WGS 720958 RANDOM 84472887;85216749 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7a1fdcfffcbd7d3d502bf71bccab39f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530369/ERR3530369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530369/ERR3530369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530369/720958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530369/720958.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530369/ERR3530369_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530369/ERR3530369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530369/720958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530369/720958.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81392719;82116843 ERS3755993 ERX3548970 GENOMIC 241994633 2019-09-19 720958 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530369/720958.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530369/720958.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530369 720958 ERR3530368 756653 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530368 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530368 5e56cbdcfb82832e6e72e32a6e628bc0;77d6dfbf29de16505fea651a11f67ad2 1313 192186442 2d1577a66060a5374906e43cc1d2df64;a9f8552356aedbb99fbca061efbe56ee SAMEA5785625 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530368/ERR3530368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530368/ERR3530368_2.fastq.gz 2061897 WGS 756653 RANDOM 138217797;142733698 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4665b2d5826652d9b17a755cf804e93b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530368/ERR3530368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530368/ERR3530368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530368/756653.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530368/756653.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530368/ERR3530368_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530368/ERR3530368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530368/756653.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530368/756653.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 132796112;137258106 ERS3755768 ERX3548745 GENOMIC 411336279 2019-09-19 756653 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530368/756653.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530368/756653.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530368 756653 ERR3530370 308563 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530370 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530370 2c94ee0214d79d2f4fb33a6d233fcff9;6dae58828b1a489784438bd9cba5e089 1313 193801238 46a9b7acb803f211a437c7f3e354ba1c;4fece69ac804b6098aa17b2de379987e SAMEA5786224 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530370/ERR3530370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530370/ERR3530370_2.fastq.gz 2136158 WGS 308563 RANDOM 140957226;143042971 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d84c078ee22a204faae9c258f9dbe641 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530370/ERR3530370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530370/ERR3530370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530370/308563.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530370/308563.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530370/ERR3530370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530370/ERR3530370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530370/308563.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530370/308563.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135373601;137448034 ERS3756366 ERX3549343 GENOMIC 422704250 2019-09-19 308563 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530370/308563.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530370/308563.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530370 308563 ERR3530371 665064 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530371 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530371 a5a1718b57ef3a0fcf176349602b6618;0c14e7c43ec2e11e5d872648814e161c 1313 156809604 61f4b0d211b4bbb77f2d3ea7332923db;7709c97d43330d02d09317461da19449 SAMEA5786070 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530371/ERR3530371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530371/ERR3530371_2.fastq.gz 1695764 WGS 665064 RANDOM 113597435;114934232 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5d74e6149b98b8af362e9d14824d817c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530371/ERR3530371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530371/ERR3530371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530371/665064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530371/665064.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530371/ERR3530371_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530371/ERR3530371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530371/665064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530371/665064.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109068245;110398853 ERS3756212 ERX3549189 GENOMIC 335668823 2019-09-19 665064 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530371/665064.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530371/665064.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530371 665064 ERR3530372 757941 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530372 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530372 9582daff329be625ac11c1c15e553ee9;cde7b216a4cc99a248cf6e500df72f4b 1313 154077758 01fde3e2f123b4ff4282945e385c813b;491326406c2b8ecf69b0176b053e640e SAMEA5785587 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530372/ERR3530372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530372/ERR3530372_2.fastq.gz 1841393 WGS 757941 RANDOM 112882693;117238084 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d123ee79ca82ab81a57ff26235d9ad9d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530372/ERR3530372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530372/ERR3530372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530372/757941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530372/757941.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530372/ERR3530372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530372/ERR3530372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530372/757941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530372/757941.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 107907860;112262341 ERS3755730 ERX3548707 GENOMIC 366306285 2019-09-19 757941 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530372/757941.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530372/757941.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530372 757941 ERR3530373 759520 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530373 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530373 9da1dcba946d9d87b2d04ccae54b1e69;d483e9527278289424deb9b0dd11e469 1313 219976993 538d55ac46e4e9e92e3a2951ae07ebd4;7b187c4dd3b6a2735ea78cbb5829d18c SAMEA5785487 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530373/ERR3530373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530373/ERR3530373_2.fastq.gz 2590266 WGS 759520 RANDOM 160881714;165372925 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 452df3f30d20e04b4302564bb48efab1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530373/ERR3530373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530373/ERR3530373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530373/759520.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530373/759520.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530373/ERR3530373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530373/ERR3530373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530373/759520.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530373/759520.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 154174878;158647094 ERS3755630 ERX3548607 GENOMIC 515662147 2019-09-19 759520 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530373/759520.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530373/759520.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530373 759520 ERR3530414 757975 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530414 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530414 ea5a24d0b2a0878e8785662ca9120478;a4f4ed778fb3033605304a3413de6e3c 1313 56804540 df48cabee00a63bbb6e79098e76ad98e;1bccc51ee147083153d96b554628ed85 SAMEA5785555 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530414/ERR3530414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530414/ERR3530414_2.fastq.gz 690588 WGS 757975 RANDOM 42265345;42900717 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 96edf7622b371e7fcd49d96240864579 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530414/ERR3530414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530414/ERR3530414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530414/757975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530414/757975.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530414/ERR3530414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530414/ERR3530414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530414/757975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530414/757975.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 40504260;41135566 ERS3755698 ERX3548675 GENOMIC 135285883 2019-09-19 757975 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530414/757975.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530414/757975.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530414 757975 ERR3530375 757976 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530375 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530375 2b8dedbd5fed9ca8b7f5074fc8c2bc75;9223a1a9c9ddec14d290fa064d0cd5e7 1313 120987144 3fc29e97f75899f1c91460df289f7f14;428f9ba9599cd3aef969c936f2af1209 SAMEA5785554 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530375/ERR3530375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530375/ERR3530375_2.fastq.gz 1477527 WGS 757976 RANDOM 89389717;91889770 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d0a11d62e44aceec3ad5b8c8e217053c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530375/ERR3530375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530375/ERR3530375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530375/757976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530375/757976.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530375/ERR3530375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530375/ERR3530375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530375/757976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530375/757976.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85539785;88028904 ERS3755697 ERX3548674 GENOMIC 291306548 2019-09-19 757976 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530375/757976.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530375/757976.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530375 757976 ERR3530376 717878 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530376 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530376 67b37fed798f5446777b23ea7b5f73ea;9b68a7c6ab982ef82a1e44b85225e9df 1313 176614261 88398bf8a5944b939ef5dcc30ca173d1;cfc7214eeaafaaa7136325ebdad8d9da SAMEA5786034 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530376/ERR3530376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530376/ERR3530376_2.fastq.gz 2133828 WGS 717878 RANDOM 131560169;132652439 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9c2d8604b536c84661a3e6fd9a541620 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530376/ERR3530376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530376/ERR3530376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530376/717878.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530376/717878.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530376/ERR3530376_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530376/ERR3530376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530376/717878.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530376/717878.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125949520;127027197 ERS3756176 ERX3549153 GENOMIC 424358411 2019-09-19 717878 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530376/717878.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530376/717878.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530376 717878 ERR3530377 308601 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530377 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530377 92fbf5d75b68bb6ab44cb4ea2bd61045;765e946dfab240501a155f59e546fdf0 1313 197654817 ec51a4cd861a54b7d19b101dde241e0d;8318eaff0b338952cfbde7f4c9a1058d SAMEA5786189 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530377/ERR3530377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530377/ERR3530377_2.fastq.gz 2198194 WGS 308601 RANDOM 143829459;145860756 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 784ac3fe8156a9f6f7ff18b46ca8e902 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530377/ERR3530377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530377/ERR3530377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530377/308601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530377/308601.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530377/ERR3530377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530377/ERR3530377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530377/308601.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530377/308601.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 138079327;140103144 ERS3756331 ERX3549308 GENOMIC 432882711 2019-09-19 308601 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530377/308601.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530377/308601.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530377 308601 ERR3530378 721004 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530378 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530378 9c25f94912c11e28217d2054f4df9c26;a99089761c0581942abc6479838b0e0d 1313 269255521 42d37dc0aa4ae699fd878c987ce9493e;a38478341f37c3af93efb2b6e93279ee SAMEA5785805 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530378/ERR3530378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530378/ERR3530378_2.fastq.gz 2778142 WGS 721004 RANDOM 191585043;196005304 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5b77f8cc3bdc2be39c7df58619f63c96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530378/ERR3530378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530378/ERR3530378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530378/721004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530378/721004.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530378/ERR3530378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530378/ERR3530378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530378/721004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530378/721004.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 184386825;188743596 ERS3755948 ERX3548925 GENOMIC 550217863 2019-09-19 721004 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530378/721004.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530378/721004.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530378 721004 ERR3530379 756660 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530379 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530379 dc57b0cbd1ba0b9ec9ef43133af7c713;435d2b09aee506a66c5ec5d3c7732441 1313 146265550 d6588cb619af24e35bcdace9a9bcddbf;24a1705a616ed93f928eef875a16c49f SAMEA5785618 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530379/ERR3530379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530379/ERR3530379_2.fastq.gz 1574073 WGS 756660 RANDOM 106327355;107849717 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bd2b143d8b73dc720427bf9cf096a32a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530379/ERR3530379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530379/ERR3530379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530379/756660.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530379/756660.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530379/ERR3530379_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530379/ERR3530379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530379/756660.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530379/756660.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102238154;103719591 ERS3755761 ERX3548738 GENOMIC 313788197 2019-09-19 756660 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530379/756660.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530379/756660.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530379 756660 ERR3530380 652822 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530380 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530380 afce631b1ff0b63e0c77c2145c95e26e;4f3c65bd29241d30eb723eb74bd0bc7b 1313 153981317 f3a8b88293473c0761af65eebb291171;152dd5521a7094fedb5a3a43744baed9 SAMEA5786101 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530380/ERR3530380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530380/ERR3530380_2.fastq.gz 1740591 WGS 652822 RANDOM 112584409;115242389 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 65ff5c2fe47831b951811367ae7624fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530380/ERR3530380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530380/ERR3530380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530380/652822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530380/652822.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530380/ERR3530380_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530380/ERR3530380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530380/652822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530380/652822.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 108014096;110666202 ERS3756243 ERX3549220 GENOMIC 347244876 2019-09-19 652822 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530380/652822.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530380/652822.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530380 652822 ERR3530381 720992 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530381 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530381 e832ca03cc06716e8be49661be617dda;edd6637783ad1426ca4302c30a59ad65 1313 103254864 714b584ac3021e45d1d89e0ea10103e8;8de67ce6f2c8890a93f8d8d6a076489e SAMEA5785817 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530381/ERR3530381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530381/ERR3530381_2.fastq.gz 1088476 WGS 720992 RANDOM 74744777;75208023 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dffb9b40d23f915ddaa540b8f09c0167 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530381/ERR3530381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530381/ERR3530381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530381/720992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530381/720992.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530381/ERR3530381_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530381/ERR3530381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530381/720992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530381/720992.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71965612;72420909 ERS3755960 ERX3548937 GENOMIC 213652781 2019-09-19 720992 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530381/720992.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530381/720992.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530381 720992 ERR3530383 717969 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530383 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530383 742813ce534f5c847d08869bde13b3a9;349029430706bbb1bcd048342792b683 1313 126298773 d3cb13ba09202cf354144d368ecfb124;508f7d0e71c0ca26bd585ad1bf18598a SAMEA5785972 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530383/ERR3530383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530383/ERR3530383_2.fastq.gz 1488934 WGS 717969 RANDOM 93091857;94466438 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d7df0763386c22a292a1cbe9b423d33a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530383/ERR3530383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530383/ERR3530383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530383/717969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530383/717969.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530383/ERR3530383_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530383/ERR3530383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530383/717969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530383/717969.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89183722;90560562 ERS3756114 ERX3549091 GENOMIC 291517283 2019-09-19 717969 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530383/717969.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530383/717969.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530383 717969 ERR3530384 757959 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530384 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530384 643153300e3064cbd667a2ff5c07d900;99055dc0dec21df72105db1b970abf37 1313 49637943 fe4d200bb54719f1a4bef09ae0bb1245;a2ad135e750d6af3909473f30e8f45c0 SAMEA5785571 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530384/ERR3530384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530384/ERR3530384_2.fastq.gz 588047 WGS 757959 RANDOM 35780914;38300990 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c5e0c524f4b36de110255c8121f9c884 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530384/ERR3530384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530384/ERR3530384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530384/757959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530384/757959.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530384/ERR3530384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530384/ERR3530384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530384/757959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530384/757959.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 34306004;36824294 ERS3755714 ERX3548691 GENOMIC 116539710 2019-09-19 757959 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530384/757959.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530384/757959.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530384 757959 ERR3530382 304294 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530382 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530382 33f7e4a80eb315a4f41ae788569f5ade;5001ee6be9ff2e30165ca386ef4f6ed9 1313 145747553 c177be410afb92fbd34d540aee0a4bd9;3b274050cac8c860531a09e1e83912a6 SAMEA5786310 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530382/ERR3530382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530382/ERR3530382_2.fastq.gz 1696412 WGS 304294 RANDOM 107168037;108441634 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9776e433d25bef0398063d9e20793495 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530382/ERR3530382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530382/ERR3530382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530382/304294.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530382/304294.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530382/ERR3530382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530382/ERR3530382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530382/304294.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530382/304294.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102701740;103959709 ERS3756452 ERX3549429 GENOMIC 333607783 2019-09-19 304294 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530382/304294.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530382/304294.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530382 304294 ERR3530386 289702 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530386 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530386 d2ddf895b1e1a0673094bf44f3e02220;bc6b7fc951549b0d3acbbf7bfe85d706 1313 327394673 f0f009ffdd91b4f16ccce554a95b4bc2;8945ce0c2368f741b9bd2a7d5cdd880c SAMEA5786307 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530386/ERR3530386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530386/ERR3530386_2.fastq.gz 3554890 WGS 289702 RANDOM 232696294;236075583 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 859d82879f8ee7c1347a97220e43a599 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530386/ERR3530386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530386/ERR3530386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530386/289702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530386/289702.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530386/ERR3530386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530386/ERR3530386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530386/289702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530386/289702.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 223101570;226466597 ERS3756449 ERX3549426 GENOMIC 700144264 2019-09-19 289702 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530386/289702.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530386/289702.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530386 289702 ERR3530387 756603 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530387 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530387 8220054568c8342d704a76192e1eaac4;63b4b766220aec5076b25464b3d19895 1313 114941519 b983661e849be0b9f56ea2e0c232851f;e51a4b73a47b2cfd7851b61269ef4917 SAMEA5785674 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530387/ERR3530387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530387/ERR3530387_2.fastq.gz 1226233 WGS 756603 RANDOM 82253449;85482501 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bcedf4a942fc19d91419a193f559a138 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530387/ERR3530387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530387/ERR3530387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530387/756603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530387/756603.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530387/ERR3530387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530387/ERR3530387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530387/756603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530387/756603.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79202170;82377086 ERS3755817 ERX3548794 GENOMIC 244333047 2019-09-19 756603 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530387/756603.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530387/756603.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530387 756603 ERR3530388 717935 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530388 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530388 44bd8427765250ed45c2833cfd2d8d8b;ce2e527c4ae884bd17b4334900bc1065 1313 156417356 02a72b16460f6e3db5aed2142f903be2;40b7782e20393129f169c7c8aa1af16e SAMEA5786005 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530388/ERR3530388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530388/ERR3530388_2.fastq.gz 1808205 WGS 717935 RANDOM 114137315;117443631 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. db426007251c715f5f0a175e025dbd14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530388/ERR3530388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530388/ERR3530388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530388/717935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530388/717935.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530388/ERR3530388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530388/ERR3530388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530388/717935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530388/717935.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109313170;112613772 ERS3756147 ERX3549124 GENOMIC 356051706 2019-09-19 717935 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530388/717935.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530388/717935.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530388 717935 ERR3530389 760593 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530389 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530389 895e94443cd74d48f3fa91be72cfe845;e105dacc6bcc59b1592cce866409337c 1313 124603258 2901fca05cf936ca862ff45ddab81c9b;165dd4d1af428dddd564626f0864505a SAMEA5785444 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530389/ERR3530389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530389/ERR3530389_2.fastq.gz 1333489 WGS 760593 RANDOM 89730922;92498827 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fc4e82b08d506a35e268aa37f0a165a0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530389/ERR3530389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530389/ERR3530389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530389/760593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530389/760593.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530389/ERR3530389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530389/ERR3530389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530389/760593.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530389/760593.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86392715;89117248 ERS3755587 ERX3548564 GENOMIC 266029941 2019-09-19 760593 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530389/760593.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530389/760593.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530389 760593 ERR3530385 753430 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530385 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530385 0993aac7ed7e04d04ee91ad61416dd91;f62696f9e20ef7ce6d335eb84437e487 1313 134505977 4b572545c75e71395a6ca462ee838386;2dcbce9a9f32d539f412feda42c6ed3e SAMEA5785760 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530385/ERR3530385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530385/ERR3530385_2.fastq.gz 1443876 WGS 753430 RANDOM 94275050;100996545 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9d895c92be1683fc32292e5e31c63c70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530385/ERR3530385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530385/ERR3530385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530385/753430.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530385/753430.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530385/ERR3530385_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530385/ERR3530385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530385/753430.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530385/753430.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90588525;97277842 ERS3755903 ERX3548880 GENOMIC 286177228 2019-09-19 753430 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530385/753430.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530385/753430.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530385 753430 ERR3530390 717937 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530390 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530390 02a4cc76f9e894f6486999cc00dd905c;841402418c2c56d6fbb74bb170446b1d 1313 110903743 c36551d2273202835e560224a70160c9;ad128193a529da60551abbb28c16785e SAMEA5786003 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530390/ERR3530390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530390/ERR3530390_2.fastq.gz 1289614 WGS 717937 RANDOM 80949360;83311815 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0efa26af549bae9df48ab92b1966072c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530390/ERR3530390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530390/ERR3530390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530390/717937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530390/717937.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530390/ERR3530390_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530390/ERR3530390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530390/717937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530390/717937.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 77710838;80064532 ERS3756145 ERX3549122 GENOMIC 253155136 2019-09-19 717937 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530390/717937.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530390/717937.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530390 717937 ERR3530392 308621 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530392 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530392 98eb6fa6efed2fe67d84515176bf8ffb;d4e868ff3cd794e9a032c03f1afa2d5b 1313 238190994 c742fb2a3de3e761997b199b99a8d02e;71b67609dbcf3d2e6d40de7aee3b35f7 SAMEA5786173 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530392/ERR3530392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530392/ERR3530392_2.fastq.gz 2642877 WGS 308621 RANDOM 173332885;175560385 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ac5444f55e19ab17cb9459227b8767ca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530392/ERR3530392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530392/ERR3530392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530392/308621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530392/308621.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530392/ERR3530392_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530392/ERR3530392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530392/308621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530392/308621.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 166547461;168777043 ERS3756315 ERX3549292 GENOMIC 523924950 2019-09-19 308621 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530392/308621.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530392/308621.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530392 308621 ERR3530393 300854 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530393 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530393 03d7b47c186d0f412c7cdb43fcfeea2a;5063c637da493f7373293be180cd8971 1313 83082804 3ba19964a43374f1b217e8571af009ca;4899e78e394b6710786d09c391822065 SAMEA5786286 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530393/ERR3530393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530393/ERR3530393_2.fastq.gz 982737 WGS 300854 RANDOM 60269038;61168791 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 36e976b1a1cc0082500efecec1a91beb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530393/ERR3530393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530393/ERR3530393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530393/300854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530393/300854.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530393/ERR3530393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530393/ERR3530393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530393/300854.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530393/300854.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57874355;58751728 ERS3756428 ERX3549405 GENOMIC 191735766 2019-09-19 300854 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530393/300854.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530393/300854.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530393 300854 ERR3530394 753451 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530394 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530394 d75e35ebed6d6f9a4338d797dffd88fb;dcce3653f591741c52f1909f218903ac 1313 104308409 5157ceb9c8ca61fb0f157105e0a4c7b5;feac97a43f9ff91d964bdf03ce782f2c SAMEA5785739 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530394/ERR3530394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530394/ERR3530394_2.fastq.gz 1154011 WGS 753451 RANDOM 77013505;76559501 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 35163bdfd34a76c8db2df23d813eae52 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530394/ERR3530394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530394/ERR3530394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530394/753451.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530394/753451.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530394/ERR3530394_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530394/ERR3530394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530394/753451.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530394/753451.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74082430;73630412 ERS3755882 ERX3548859 GENOMIC 230110761 2019-09-19 753451 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530394/753451.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530394/753451.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530394 753451 ERR3530391 308570 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530391 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530391 5a916d6f660bbc430be5bc850e3e16db;568cf18dc413d675d33f6de58984a50e 1313 158300243 f2da4b793fb66f33e2139fc8feb7f3d6;dca9a8cfc07685d26f7748a2bef6d401 SAMEA5786217 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530391/ERR3530391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530391/ERR3530391_2.fastq.gz 1730809 WGS 308570 RANDOM 114582261;117201701 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7757fbbcc36378dc1ad5265fdf1596d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530391/ERR3530391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530391/ERR3530391_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530391/308570.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530391/308570.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530391/ERR3530391_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530391/ERR3530391_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530391/308570.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530391/308570.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110032072;112624449 ERS3756359 ERX3549336 GENOMIC 342191177 2019-09-19 308570 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530391/308570.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530391/308570.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530391 308570 ERR3530395 753459 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530395 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530395 818f275201510508aadc021b2ba0f93e;3904ce11b5e628b63cfd7213944ce795 1313 145376486 f952069f711c06a7665e40d00ce754c2;29b331ef1677e826d7f21257c4072768 SAMEA5785731 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530395/ERR3530395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530395/ERR3530395_2.fastq.gz 1624106 WGS 753459 RANDOM 106253081;107267640 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 669ff25d4933028b669c83b9456776ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530395/ERR3530395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530395/ERR3530395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530395/753459.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530395/753459.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530395/ERR3530395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530395/ERR3530395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530395/753459.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530395/753459.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101985571;103014977 ERS3755874 ERX3548851 GENOMIC 318430159 2019-09-19 753459 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530395/753459.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530395/753459.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530395 753459 ERR3530423 757949 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530423 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530423 464793cbc20d0e06e86a4d04eec02ac1;1642f0e1a7ab59db9789bef886ac58ec 1313 99397194 728d3ebeba0d4fcf6e4f1684a1ee0dda;818ee1b6d15ebfe99d5087a14a66e343 SAMEA5785580 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530423/ERR3530423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530423/ERR3530423_2.fastq.gz 1195239 WGS 757949 RANDOM 72796049;75834865 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 097761e38255564cc367a1b3349d5df4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530423/ERR3530423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530423/ERR3530423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530423/757949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530423/757949.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530423/ERR3530423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530423/ERR3530423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530423/757949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530423/757949.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 69739232;72780860 ERS3755723 ERX3548700 GENOMIC 237384646 2019-09-19 757949 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530423/757949.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530423/757949.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530423 757949 ERR3530399 753438 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530399 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530399 c5623f9cdbe7922895e7a809c04d6650;017b5432282c6a2cc2583cdc39fc7296 1313 105356475 85ac3636579a3dce7ed30a2d95d4c2ee;bc500d97135c78bf100856c7f3ca48fb SAMEA5785752 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530399/ERR3530399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530399/ERR3530399_2.fastq.gz 1153390 WGS 753438 RANDOM 76965336;77482818 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 562bbc43cc1a1a83cf6e7afae96348ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530399/ERR3530399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530399/ERR3530399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530399/753438.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530399/753438.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530399/ERR3530399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530399/ERR3530399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530399/753438.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530399/753438.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74057484;74576848 ERS3755895 ERX3548872 GENOMIC 229723203 2019-09-19 753438 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530399/753438.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530399/753438.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530399 753438 ERR3530397 756595 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530397 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530397 b5190e011e3b510c84b09884dc98996c;bfec664fe9367fcf5a7b6e61b497f8cd 1313 192557463 015fa93a1f162b35b65618bc9b32fa31;27a01df3608e20d33591136c3579b851 SAMEA5785682 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530397/ERR3530397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530397/ERR3530397_2.fastq.gz 2052067 WGS 756595 RANDOM 137820585;142823560 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 065102a335cbdf5caf971d8a892fc983 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530397/ERR3530397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530397/ERR3530397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530397/756595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530397/756595.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530397/ERR3530397_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530397/ERR3530397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530397/756595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530397/756595.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 132397552;137338500 ERS3755825 ERX3548802 GENOMIC 408832749 2019-09-19 756595 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530397/756595.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530397/756595.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530397 756595 ERR3530432 757973 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530432 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530432 1b73e5b97d4c5927d93ebc25901af7c5;9ca6602731106b44160c05a8e985355e 1313 164472920 29cb6043fcba69c5d9b4b1f6d6ec6307;5cef82256952c27f1b6e631f966866c3 SAMEA5785557 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530432/ERR3530432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530432/ERR3530432_2.fastq.gz 2003895 WGS 757973 RANDOM 122090256;124786986 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 210e47820321b2db463588eee1816ba6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530432/ERR3530432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530432/ERR3530432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530432/757973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530432/757973.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530432/ERR3530432_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530432/ERR3530432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530432/757973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530432/757973.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116761860;119450561 ERS3755700 ERX3548677 GENOMIC 399473315 2019-09-19 757973 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530432/757973.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530432/757973.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530432 757973 ERR3530400 753419 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530400 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530400 e23f80cf4939300da905e819c21344c7;fe90690503de18dd97c40ed5a20863fd 1313 162072865 62934e7ed59a98ce459af3d19f404128;090c45ea4afe671c4737a719a3faf7b5 SAMEA5785771 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530400/ERR3530400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530400/ERR3530400_2.fastq.gz 1766007 WGS 753419 RANDOM 116509128;120269449 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 04495868690635a4bf3812b734b5a6bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530400/ERR3530400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530400/ERR3530400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530400/753419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530400/753419.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530400/ERR3530400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530400/ERR3530400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530400/753419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530400/753419.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111772809;115526975 ERS3755914 ERX3548891 GENOMIC 349893132 2019-09-19 753419 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530400/753419.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530400/753419.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530400 753419 ERR3530401 651027 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530401 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530401 cb5e4550f6f5879a83ee58b44a652bcb;e17b591be655dfe1b555012a6f3b1d3c 1313 170878863 933a32f7a38c7e8394814e0b8feca3ae;3cfb210d61e446632ea299b99f858f5b SAMEA5786120 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530401/ERR3530401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530401/ERR3530401_2.fastq.gz 1866470 WGS 651027 RANDOM 123406082;127534332 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8fdf8cb28e4047438ac7539692db71d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530401/ERR3530401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530401/ERR3530401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530401/651027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530401/651027.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530401/ERR3530401_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530401/ERR3530401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530401/651027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530401/651027.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118535539;122637973 ERS3756262 ERX3549239 GENOMIC 372618376 2019-09-19 651027 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530401/651027.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530401/651027.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530401 651027 ERR3530402 311472 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530402 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530402 fb45c7dd5a1fc650d9f5bafc554bf253;c7d720210f8aa6cbcd0d355abae3d5e7 1313 209280085 473e314e0e1cbedccb8b9fb29ad01b88;fff7ff4ccb592465db3b465a587607ac SAMEA5786152 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530402/ERR3530402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530402/ERR3530402_2.fastq.gz 2352763 WGS 311472 RANDOM 152270137;153900425 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0be347a91f99bbbd4cf7024c20a40e43 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530402/ERR3530402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530402/ERR3530402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530402/311472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530402/311472.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530402/ERR3530402_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530402/ERR3530402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530402/311472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530402/311472.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 146075279;147714238 ERS3756294 ERX3549271 GENOMIC 462545417 2019-09-19 311472 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530402/311472.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530402/311472.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530402 311472 ERR3530403 758007 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530403 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530403 409f085b2eb6149c476e50a08bcd0f5d;16880431e231fa41818eb0a06bb7e2cd 1313 115111665 6072e5034c0dc661844f6379783fbdde;58ebf69fbc7a1adbe98b657a566c039e SAMEA5785524 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530403/ERR3530403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530403/ERR3530403_2.fastq.gz 1375440 WGS 758007 RANDOM 83672780;87910531 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5eab47f9afb7f29dda77096076169c9a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530403/ERR3530403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530403/ERR3530403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530403/758007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530403/758007.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530403/ERR3530403_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530403/ERR3530403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530403/758007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530403/758007.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80161549;84387442 ERS3755667 ERX3548644 GENOMIC 272139945 2019-09-19 758007 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530403/758007.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530403/758007.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530403 758007 ERR3530404 757956 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530404 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530404 4364eebb647eb0c46bcc949557d0a362;0a85b15f831e688b719deae6124cae25 1313 82630151 504e89a2bfbea7e4b3c67450d0afef37;daea04022e31477cb42b562eabfae0aa SAMEA5785574 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530404/ERR3530404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530404/ERR3530404_2.fastq.gz 975043 WGS 757956 RANDOM 59143319;64034687 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0d6aa6e3a9804aab676a5f24dad0b8b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530404/ERR3530404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530404/ERR3530404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530404/757956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530404/757956.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530404/ERR3530404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530404/ERR3530404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530404/757956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530404/757956.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56660801;61547708 ERS3755717 ERX3548694 GENOMIC 194304700 2019-09-19 757956 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530404/757956.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530404/757956.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530404 757956 ERR3530406 758003 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530406 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530406 bb5df744de2ee76f076962471f1615fa;fadda24c47c82576cd090c6b79809a29 1313 121222120 c12dbfaf9d1035c67c31eb2f011f0be5;3ac5fe5c2c3789956040dfe0be602057 SAMEA5785528 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530406/ERR3530406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530406/ERR3530406_2.fastq.gz 1472966 WGS 758003 RANDOM 89559487;92147540 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 59e2d685764abafc7538dc20885b90c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530406/ERR3530406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530406/ERR3530406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530406/758003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530406/758003.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530406/ERR3530406_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530406/ERR3530406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530406/758003.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530406/758003.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85720768;88291984 ERS3755671 ERX3548648 GENOMIC 292427971 2019-09-19 758003 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530406/758003.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530406/758003.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530406 758003 ERR3530408 753428 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530408 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530408 9a5ecfebc84cebc34015dd152e8375a4;1253dae5be5bd127ec2e6ba45e52a53e 1313 117514314 a65c49a2c1bcf18fa78cf81f7d372a09;5aafd60dc2691e634ef0ca84dc1cb5ad SAMEA5785762 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530408/ERR3530408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530408/ERR3530408_2.fastq.gz 1270587 WGS 753428 RANDOM 82592179;88298067 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 62083a274227e8893a3af353f0d478aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530408/ERR3530408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530408/ERR3530408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530408/753428.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530408/753428.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530408/ERR3530408_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530408/ERR3530408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530408/753428.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530408/753428.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79394237;85088835 ERS3755905 ERX3548882 GENOMIC 250903725 2019-09-19 753428 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530408/753428.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530408/753428.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530408 753428 ERR3530407 311484 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530407 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530407 b10d9cef69c3912f5f87d20e14ef5ba0;71ba8b4c026bfc9c44d1ae491ce9386f 1313 172038304 cd2273e5203d48778db9bcb43e996049;767cacd92f33f36a3cc3938777f9bf63 SAMEA5786140 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530407/ERR3530407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530407/ERR3530407_2.fastq.gz 1918402 WGS 311484 RANDOM 124851434;126628506 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c9ef16f413a642ae2690b8d3195022db ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530407/ERR3530407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530407/ERR3530407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530407/311484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530407/311484.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530407/ERR3530407_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530407/ERR3530407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530407/311484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530407/311484.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119640442;121425073 ERS3756282 ERX3549259 GENOMIC 375581945 2019-09-19 311484 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530407/311484.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530407/311484.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530407 311484 ERR3530410 300846 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530410 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530410 59211c028666a315a9dce775c9e397e8;0c4b42d030d192f4184ed9cfb23913e3 1313 165828934 64e1c5f3a9d6fc8b82dc226bb53e2a74;7733467f89df3a5d5ab1656c4794a44c SAMEA5786294 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530410/ERR3530410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530410/ERR3530410_2.fastq.gz 1958940 WGS 300846 RANDOM 120190733;121898887 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6d1c7f6b8f4291e3570b4afe8dc3ac7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530410/ERR3530410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530410/ERR3530410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530410/300846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530410/300846.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530410/ERR3530410_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530410/ERR3530410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530410/300846.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530410/300846.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 115195348;116879326 ERS3756436 ERX3549413 GENOMIC 385211016 2019-09-19 300846 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530410/300846.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530410/300846.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530410 300846 ERR3530409 720256 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530409 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530409 5f53c8e74b8e97f4171dcb9867300152;b1a7b34f151d5b19f9a88941034ad773 1313 168058268 fac4a757236ffe7fa7dedb54e367dad9;cb4def6dd5695d6cae40ff9c86e4c543 SAMEA5785878 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530409/ERR3530409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530409/ERR3530409_2.fastq.gz 1881172 WGS 720256 RANDOM 122068892;124480008 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f4532e5a6c3a3a41267cf8aac6c9f826 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530409/ERR3530409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530409/ERR3530409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530409/720256.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530409/720256.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530409/ERR3530409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530409/ERR3530409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530409/720256.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530409/720256.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117015150;119430497 ERS3756021 ERX3548998 GENOMIC 370143803 2019-09-19 720256 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530409/720256.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530409/720256.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530409 720256 ERR3530411 757958 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530411 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530411 b2f1e38ec536feb9ed541083a9631c27;bc061afb47a95a31a58b1341853ee49d 1313 62595697 efa82d9529ccbe7ae72a3eb2df6c259a;dbbc307f42c20758ca4dd475c770e8e1 SAMEA5785572 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530411/ERR3530411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530411/ERR3530411_2.fastq.gz 739568 WGS 757958 RANDOM 44832816;48577631 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b7bc50d35178683786c1929a60c04231 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530411/ERR3530411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530411/ERR3530411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530411/757958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530411/757958.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530411/ERR3530411_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530411/ERR3530411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530411/757958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530411/757958.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 42980931;46723580 ERS3755715 ERX3548692 GENOMIC 147329311 2019-09-19 757958 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530411/757958.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530411/757958.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530411 757958 ERR3530412 660128 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530412 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530412 aaa76471a629d24e1b3a3be2539f931c;616e48f0b2d5e14fcc4acda2a6a02108 1313 198584604 a0a18d5ed1c95c7e9545b01e18a5ad22;2fdb0e2cb5d1f8f6100be59fcf985458 SAMEA5786079 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530412/ERR3530412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530412/ERR3530412_2.fastq.gz 2353077 WGS 660128 RANDOM 145459976;150083486 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5c73c1312775a451c3e046e413ebfdcd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530412/ERR3530412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530412/ERR3530412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530412/660128.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530412/660128.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530412/ERR3530412_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530412/ERR3530412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530412/660128.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530412/660128.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139338094;143951462 ERS3756221 ERX3549198 GENOMIC 469478072 2019-09-19 660128 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530412/660128.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530412/660128.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530412 660128 ERR3530413 759553 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530413 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530413 d45869588c80bd64f967da67767b2fad;3ae61e52f3747064d56619c06da356f2 1313 177455436 4a80ab731944c3ff8e4c06c79aa2022c;606acbdfda33193493f641dcd0261ead SAMEA5785454 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530413/ERR3530413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530413/ERR3530413_2.fastq.gz 2088112 WGS 759553 RANDOM 128557066;134706634 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 170b04872e94f533f43fbd62cd03282f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530413/ERR3530413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530413/ERR3530413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530413/759553.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530413/759553.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530413/ERR3530413_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530413/ERR3530413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530413/759553.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530413/759553.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123064973;129201037 ERS3755597 ERX3548574 GENOMIC 415529154 2019-09-19 759553 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530413/759553.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530413/759553.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530413 759553 ERR3530438 758005 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530438 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530438 79ec330051de90ba4e476f236956064f;17913e64345e200224982c186f6e4e62 1313 86855949 5e17fa296b5ac31fd5a338ce25dd559b;7e972bdd3eae57b1d59a035533f28161 SAMEA5785526 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530438/ERR3530438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530438/ERR3530438_2.fastq.gz 1051833 WGS 758005 RANDOM 64281995;65960726 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 46a8c9aebc8dfa5974f4f7f6f6b6481c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530438/ERR3530438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530438/ERR3530438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530438/758005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530438/758005.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530438/ERR3530438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530438/ERR3530438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530438/758005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530438/758005.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 61581217;63251916 ERS3755669 ERX3548646 GENOMIC 209282981 2019-09-19 758005 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530438/758005.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530438/758005.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530438 758005 ERR3530485 758015 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530485 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530485 4d648efd300381ad05a7e361cb2424ae;675149d490ff6c5226d1feee397faad9 1313 115410785 248da3326ef7ed6b97402acc54ad9f97;48c24431c95f9711004497b0caf93804 SAMEA5785516 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530485/ERR3530485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530485/ERR3530485_2.fastq.gz 1404795 WGS 758015 RANDOM 85332139;87673058 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a0bc2e0dedf399a08dd00e8cb72c0609 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530485/ERR3530485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530485/ERR3530485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530485/758015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530485/758015.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530485/ERR3530485_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530485/ERR3530485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530485/758015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530485/758015.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81717598;84046266 ERS3755659 ERX3548636 GENOMIC 278575251 2019-09-19 758015 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530485/758015.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530485/758015.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530485 758015 ERR3530416 651547 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530416 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530416 6eb0f619c9dced76f9bf679f2595e335;fc4478c6595676b63aa472cc0556660a 1313 159868144 b6dadcfd467a91e3445065eb31a0c5b7;bd65460a92c97a180df2810e776fd6c2 SAMEA5786106 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530416/ERR3530416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530416/ERR3530416_2.fastq.gz 1920003 WGS 651547 RANDOM 117473754;121461722 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0bab6c4c85614fba935d156ded2d3e85 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530416/ERR3530416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530416/ERR3530416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530416/651547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530416/651547.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530416/ERR3530416_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530416/ERR3530416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530416/651547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530416/651547.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112322912;116303241 ERS3756248 ERX3549225 GENOMIC 382742057 2019-09-19 651547 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530416/651547.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530416/651547.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530416 651547 ERR3530417 308618 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530417 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530417 c1213384439b368ef44a4588feabc6d0;b72a3a950c7cdc6b68f1c60490f953cf 1313 186670665 de742da62c3a5663f6da4cfa7486f0f7;0dc890221c154e5c62237b5d96ce0dc7 SAMEA5786176 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530417/ERR3530417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530417/ERR3530417_2.fastq.gz 2069676 WGS 308618 RANDOM 136425191;137657890 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4561b9bfba35b4dea790f601f1b3c5cb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530417/ERR3530417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530417/ERR3530417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530417/308618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530417/308618.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530417/ERR3530417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530417/ERR3530417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530417/308618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530417/308618.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130983596;132208019 ERS3756318 ERX3549295 GENOMIC 409895738 2019-09-19 308618 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530417/308618.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530417/308618.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530417 308618 ERR3530418 660132 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530418 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530418 5c0a128bbdb560b7cb37656f532b4c3f;aa3b9a58ac60b17793ff2f14e6b71684 1313 114026541 592f7fbc1c2b72664728ef16025755db;909a244a541f4a61058d7a058cb68d03 SAMEA5786077 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530418/ERR3530418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530418/ERR3530418_2.fastq.gz 1316455 WGS 660132 RANDOM 82776606;86099981 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c39b6adcaa14045e78b4f61bd970d7c6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530418/ERR3530418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530418/ERR3530418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530418/660132.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530418/660132.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530418/ERR3530418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530418/ERR3530418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530418/660132.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530418/660132.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79429384;82740292 ERS3756219 ERX3549196 GENOMIC 262841874 2019-09-19 660132 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530418/660132.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530418/660132.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530418 660132 ERR3530419 757974 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530419 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530419 8717df2a74689bca5cb91d39c0403510;75351a40358e2ca04a3e647efb6dd8ba 1313 122674021 02772ce9971c29bc7235cda16fa4bc67;fc27225848c467f45df704c1166aa937 SAMEA5785556 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530419/ERR3530419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530419/ERR3530419_2.fastq.gz 1481758 WGS 757974 RANDOM 90835080;92870019 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 75c649974e7d90b627bc1fff4834e268 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530419/ERR3530419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530419/ERR3530419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530419/757974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530419/757974.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530419/ERR3530419_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530419/ERR3530419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530419/757974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530419/757974.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86984993;89013064 ERS3755699 ERX3548676 GENOMIC 295138265 2019-09-19 757974 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530419/757974.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530419/757974.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530419 757974 ERR3530420 300865 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530420 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530420 8983fccb17e170f64b77440e62b00e91;c02aaf555bce230190ae53821391b192 1313 124341148 29c5f857f5694f5bb6ad1971d1ca475d;daea7e2476e5747b781946760b7bcf7c SAMEA5786275 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530420/ERR3530420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530420/ERR3530420_2.fastq.gz 1464101 WGS 300865 RANDOM 90263554;91427402 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f3e98de34cbff82e2a54755529de1b44 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530420/ERR3530420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530420/ERR3530420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530420/300865.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530420/300865.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530420/ERR3530420_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530420/ERR3530420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530420/300865.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530420/300865.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86646054;87784850 ERS3756417 ERX3549394 GENOMIC 288554226 2019-09-19 300865 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530420/300865.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530420/300865.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530420 300865 ERR3530421 300864 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530421 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530421 7d6e6159307fec319f0923fe15ca2789;eb53757b3e40cf13045ea8235ac38d62 1313 138006881 790f690326fd6d702e5b522abdd3a46f;644ae2d6e06df9b35d786c1ea8b9bd34 SAMEA5786276 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530421/ERR3530421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530421/ERR3530421_2.fastq.gz 1602791 WGS 300864 RANDOM 98536503;102561750 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4639b7a2a96b6672b9e7b0c3a6a0d7e4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530421/ERR3530421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530421/ERR3530421_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530421/300864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530421/300864.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530421/ERR3530421_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530421/ERR3530421_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530421/300864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530421/300864.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94519616;98490015 ERS3756418 ERX3549395 GENOMIC 316457875 2019-09-19 300864 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530421/300864.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530421/300864.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530421 300864 ERR3530422 756670 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530422 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530422 042430c415323330f7f5434ece813d10;66db8ce9168e526790bbab57d391b816 1313 179821536 7dc3b723ea84d8c5828ce63e0b2acffe;35afe9a55392d79f5a404b72b3fae14c SAMEA5785608 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530422/ERR3530422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530422/ERR3530422_2.fastq.gz 1937603 WGS 756670 RANDOM 129211545;133909080 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d91737d33038b962ce5a3ec394240e61 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530422/ERR3530422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530422/ERR3530422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530422/756670.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530422/756670.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530422/ERR3530422_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530422/ERR3530422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530422/756670.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530422/756670.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124110222;128752137 ERS3755751 ERX3548728 GENOMIC 385600744 2019-09-19 756670 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530422/756670.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530422/756670.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530422 756670 ERR3530513 755699 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530513 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530513 cd3d9841fc255dc6d9bee546f206a627;50e2180738a396911637a2fd099367cc 1313 143206414 565a18e6c829a5af30ae6f5255d68fe7;cc96822f146626edf93eba3d93462817 SAMEA5785692 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530513/ERR3530513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530513/ERR3530513_2.fastq.gz 1638068 WGS 755699 RANDOM 103917063;108040453 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5af4be0578ce9a68bcb6acc6aef8b10b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530513/ERR3530513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530513/ERR3530513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530513/755699.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530513/755699.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530513/ERR3530513_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530513/ERR3530513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530513/755699.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530513/755699.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99580565;103700152 ERS3755835 ERX3548812 GENOMIC 326593194 2019-09-19 755699 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530513/755699.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530513/755699.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530513 755699 ERR3530425 720257 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530425 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530425 6a254de87a3c37caca3d29f02df1d798;1164521627311f3202a1c9ad18fade8b 1313 196608841 4ab490a3e855de4dae5c0d66ea7136a0;3e1a80d7a6f362db4be7f051be59ad22 SAMEA5785877 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530425/ERR3530425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530425/ERR3530425_2.fastq.gz 2194646 WGS 720257 RANDOM 142691988;145908706 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 78db55535ca9df99f0a91d6b9482c749 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530425/ERR3530425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530425/ERR3530425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530425/720257.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530425/720257.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530425/ERR3530425_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530425/ERR3530425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530425/720257.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530425/720257.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136907489;140119688 ERS3756020 ERX3548997 GENOMIC 435092664 2019-09-19 720257 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530425/720257.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530425/720257.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530425 720257 ERR3530424 720191 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530424 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530424 08820ee0aa02eb1a3b7caefe5147808f;e13199cdabc829822348542f44c553ed 1313 178023539 e5d8145cab029b8713e8e01395e4a422;7eee4429e39bf56cf6e7ba39e84b5962 SAMEA5785944 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530424/ERR3530424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530424/ERR3530424_2.fastq.gz 2003931 WGS 720191 RANDOM 130442038;131693025 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ac5597392ffb9ffef0bd29ea270c9cc4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530424/ERR3530424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530424/ERR3530424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530424/720191.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530424/720191.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530424/ERR3530424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530424/ERR3530424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530424/720191.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530424/720191.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125124383;126362895 ERS3756086 ERX3549063 GENOMIC 398241136 2019-09-19 720191 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530424/720191.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530424/720191.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530424 720191 ERR3530426 667375 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530426 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530426 c25fe2fb3c89bffb1362e8ca0f0a57a3;23ccd7c4c0ca7044466b270fb1b80c22 1313 129171051 27e2e4b294237a98d5b4fee59c09ba87;080c7e6ac7887994bc62bac47a687e63 SAMEA5786063 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530426/ERR3530426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530426/ERR3530426_2.fastq.gz 1354623 WGS 667375 RANDOM 91395028;96024217 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a8e2707a5ac7c03e5af50c073092ab33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530426/ERR3530426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530426/ERR3530426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530426/667375.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530426/667375.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530426/ERR3530426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530426/ERR3530426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530426/667375.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530426/667375.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87998866;92548685 ERS3756205 ERX3549182 GENOMIC 269256658 2019-09-19 667375 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530426/667375.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530426/667375.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530426 667375 ERR3530522 757960 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530522 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530522 4d2b1786ab6a359a8573eb5a80ca649d;39433eb0ba3137974825232d09ea0287 1313 140876732 739b3a8d3a3ebc3d0aa6414fa9338caa;db0d2ae33e5311455c4e546614522845 SAMEA5785570 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530522/ERR3530522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530522/ERR3530522_2.fastq.gz 1734928 WGS 757960 RANDOM 104581995;106768411 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c4fd7d2454b509c147c713c323c86219 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530522/ERR3530522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530522/ERR3530522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530522/757960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530522/757960.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530522/ERR3530522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530522/ERR3530522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530522/757960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530522/757960.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99962494;102148934 ERS3755713 ERX3548690 GENOMIC 341287200 2019-09-19 757960 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530522/757960.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530522/757960.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530522 757960 ERR3530427 311479 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530427 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530427 93a4256bec79d0da9082a08af6d5a6b5;6c71acc0a6783c048525b262b5694176 1313 111492598 22a271ede851948b37545cf438da611c;b62c25aa52cb182e6010526e4275c42e SAMEA5786145 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530427/ERR3530427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530427/ERR3530427_2.fastq.gz 1255146 WGS 311479 RANDOM 74551973;76187409 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dca48f8ad4969a4bece48425a76058f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530427/ERR3530427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530427/ERR3530427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530427/311479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530427/311479.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530427/ERR3530427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530427/ERR3530427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530427/311479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530427/311479.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78578225;80244271 ERS3756287 ERX3549264 GENOMIC 245379362 2019-09-19 311479 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530427/311479.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530427/311479.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530427 311479 ERR3530430 313926 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530430 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530430 e8c96af6bf6f5ebc6bb75be0bea117fd;6409ff52c0d55349e5fb80384a11a2fb 1313 226181624 4adc9996b960934c3654b07ffb4d81ef;c14a451c38bcbe6dc48244edba7a4748 SAMEA5786131 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530430/ERR3530430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530430/ERR3530430_2.fastq.gz 2483851 WGS 313926 RANDOM 161278212;166010068 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6c2370b8d3c9da346a0d643453d07645 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530430/ERR3530430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530430/ERR3530430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530430/313926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530430/313926.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530430/ERR3530430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530430/ERR3530430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530430/313926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530430/313926.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 154744563;159490372 ERS3756273 ERX3549250 GENOMIC 478691130 2019-09-19 313926 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530430/313926.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530430/313926.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530430 313926 ERR3530429 720964 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530429 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530429 086df2ea6823229d03ff00d9380d8a5d;3adc081222186fd85975f3c841d54d9e 1313 287825737 55f7b494bf12ca2ba66e469590f81f7a;b9d3c7d8c03d48c7bf6951cfb567a86b SAMEA5785844 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530429/ERR3530429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530429/ERR3530429_2.fastq.gz 2969437 WGS 720964 RANDOM 203396749;210675895 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e3adc3750b0f0c5a8cb51cf51a161355 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530429/ERR3530429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530429/ERR3530429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530429/720964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530429/720964.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530429/ERR3530429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530429/ERR3530429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530429/720964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530429/720964.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 195632451;202784810 ERS3755987 ERX3548964 GENOMIC 587924876 2019-09-19 720964 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530429/720964.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530429/720964.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530429 720964 ERR3530431 717820 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530431 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530431 a763f0375bddd81d6e7fb81a1de7bcbf;153e44b89e7870d1bf13f3a6fc013ff7 1313 158177193 6ba7e8fb2700e3b57bc22c46bb7b4770;2c472fb9e6bb950e7ac2e8f91939d2c2 SAMEA5786059 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530431/ERR3530431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530431/ERR3530431_2.fastq.gz 1866251 WGS 717820 RANDOM 115821149;119392921 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b1420db9daa5a33cdb257e4bb8fc6344 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530431/ERR3530431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530431/ERR3530431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530431/717820.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530431/717820.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530431/ERR3530431_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530431/ERR3530431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530431/717820.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530431/717820.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110787843;114344283 ERS3756201 ERX3549178 GENOMIC 370212774 2019-09-19 717820 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530431/717820.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530431/717820.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530431 717820 ERR3530529 758008 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530529 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530529 b3d894fdb568dd5436344e705ee5785f;07ed4ff2a83737cce2c3b7101e5bd729 1313 104487466 3d5aa85aea2c4c03991c0b5532e56d65;bef95e8b5947d60d4630e43b2c829402 SAMEA5785523 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530529/ERR3530529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530529/ERR3530529_2.fastq.gz 1258630 WGS 758008 RANDOM 76355178;80056616 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f6c545192f7a85324ec8c77a5d9e9b70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530529/ERR3530529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530529/ERR3530529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530529/758008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530529/758008.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530529/ERR3530529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530529/ERR3530529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530529/758008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530529/758008.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 73166284;76861367 ERS3755666 ERX3548643 GENOMIC 250844750 2019-09-19 758008 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530529/758008.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530529/758008.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530529 758008 ERR3530433 717884 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530433 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530433 4f1c116cf78510817fc591c5c0a1f979;bb9703e55fd27bbd1ed3683093ec9c9b 1313 158514569 43c9a6b3d816582988a9568b33cfe317;ffa991872148145f0597b81398dedf27 SAMEA5786031 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530433/ERR3530433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530433/ERR3530433_2.fastq.gz 1884301 WGS 717884 RANDOM 116996623;119655472 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 962ae6a7c94dff15266106f9cecfd42b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530433/ERR3530433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530433/ERR3530433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530433/717884.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530433/717884.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530433/ERR3530433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530433/ERR3530433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530433/717884.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530433/717884.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111980528;114627062 ERS3756173 ERX3549150 GENOMIC 375244713 2019-09-19 717884 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530433/717884.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530433/717884.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530433 717884 ERR3530434 720969 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530434 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530434 0b9b14184db78cf3de631cdca1b64d65;6537b54a42a52b58f5bb2272a4fc3135 1313 306753389 ed8f05c058ff517c983f2ea54b5a557c;91ce65e56573673101bfc2c07d0fac73 SAMEA5785839 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530434/ERR3530434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530434/ERR3530434_2.fastq.gz 3235160 WGS 720969 RANDOM 222496956;222839997 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3b10a8d7963b335098d1581f896cc5fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530434/ERR3530434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530434/ERR3530434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530434/720969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530434/720969.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530434/ERR3530434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530434/ERR3530434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530434/720969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530434/720969.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 213648954;213976093 ERS3755982 ERX3548959 GENOMIC 639571900 2019-09-19 720969 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530434/720969.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530434/720969.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530434 720969 ERR3530435 753501 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530435 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530435 fa9851a92ddcc88b695af544bada6c33;903f13dc87a216eca297cb5583a9dc00 1313 131672427 7bc092394f2869ceab1f2d0b70fdc9d2;bb9d6ae98044e2af3c479855284ec545 SAMEA5785693 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530435/ERR3530435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530435/ERR3530435_2.fastq.gz 1443277 WGS 753501 RANDOM 95420781;97588744 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 76a23e6e581aa5b7d8d854d3ecc06ab4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530435/ERR3530435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530435/ERR3530435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530435/753501.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530435/753501.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530435/ERR3530435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530435/ERR3530435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530435/753501.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530435/753501.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91705906;93881040 ERS3755836 ERX3548813 GENOMIC 286545744 2019-09-19 753501 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530435/753501.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530435/753501.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530435 753501 ERR3530440 308572 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530440 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530440 c290b0ffbcdb125199ddbdd084e0a719;0fb29f23226509b807efa02328908fc0 1313 180406941 b4d5b73b5827635cce2cd1f8fe86087c;0c4b00f47c062c150a428a5494dcc41f SAMEA5786215 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530440/ERR3530440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530440/ERR3530440_2.fastq.gz 1991712 WGS 308572 RANDOM 131480062;133423713 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b971ee1815ce19bb326718e227b56784 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530440/ERR3530440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530440/ERR3530440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530440/308572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530440/308572.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530440/ERR3530440_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530440/ERR3530440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530440/308572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530440/308572.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 126252607;128184316 ERS3756357 ERX3549334 GENOMIC 394660004 2019-09-19 308572 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530440/308572.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530440/308572.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530440 308572 ERR3530436 657391 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530436 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530436 4aeeaf51a202154346bff2fe88dd94f0;912b7900972770a55b8b2a16694ece94 1313 129839717 2fa30622da885210b0ab1aa893990b56;131820121f2754b3139e30d398d35f87 SAMEA5786082 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530436/ERR3530436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530436/ERR3530436_2.fastq.gz 1435589 WGS 657391 RANDOM 94952279;95748177 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e52dd501027bfa5bff678800b56264b0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530436/ERR3530436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530436/ERR3530436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530436/657391.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530436/657391.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530436/ERR3530436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530436/ERR3530436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530436/657391.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530436/657391.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91295748;92084725 ERS3756224 ERX3549201 GENOMIC 282601098 2019-09-19 657391 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530436/657391.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530436/657391.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530436 657391 ERR3530533 759513 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530533 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530533 0029928de61628e2e75e814043f8f540;3b46810d7ea8dbc4785cd05cdc46b4bb 1313 203160265 4404ce104ee1c2ca213cbe1de55ba5cc;140d902ec4cad5bf947363d43716ff14 SAMEA5785494 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530533/ERR3530533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530533/ERR3530533_2.fastq.gz 2415927 WGS 759513 RANDOM 149831279;152561264 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0523d988214556f3508813a68f9e1204 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530533/ERR3530533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530533/ERR3530533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530533/759513.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530533/759513.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530533/ERR3530533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530533/ERR3530533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530533/759513.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530533/759513.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143613495;146323454 ERS3755637 ERX3548614 GENOMIC 480954302 2019-09-19 759513 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530533/759513.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530533/759513.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530533 759513 ERR3530437 756604 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530437 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530437 678e741be473ee1cc7795bc701fcf1a3;9fac80505d97b2c9b97430beeabd0b94 1313 110930323 aefdeaf2f1b63717a8182dffb10135b6;5eee6a88aa47deba617aefd3193822a2 SAMEA5785673 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530437/ERR3530437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530437/ERR3530437_2.fastq.gz 1183152 WGS 756604 RANDOM 79676341;82234907 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 85a1d1e4ce39ae0d7319eeff52df755e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530437/ERR3530437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530437/ERR3530437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530437/756604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530437/756604.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530437/ERR3530437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530437/ERR3530437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530437/756604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530437/756604.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 76716995;79238167 ERS3755816 ERX3548793 GENOMIC 235535604 2019-09-19 756604 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530437/756604.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530437/756604.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530437 756604 ERR3530439 311476 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530439 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530439 f5b20e888b150d5db566884ff02d216e;1f6b7bc86e4485a30ec3d2a9052872a7 1313 173617622 f4e33624f05d1b70b6e177c62e58fd54;7da6c474ad615d93ef59c36fcb39e2d6 SAMEA5786148 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530439/ERR3530439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530439/ERR3530439_2.fastq.gz 1937599 WGS 311476 RANDOM 126203031;128409232 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eaf53db3dfe2daac5da5f9084dddc904 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530439/ERR3530439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530439/ERR3530439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530439/311476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530439/311476.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530439/ERR3530439_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530439/ERR3530439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530439/311476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530439/311476.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120955693;123167439 ERS3756290 ERX3549267 GENOMIC 384163867 2019-09-19 311476 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530439/311476.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530439/311476.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530439 311476 ERR3530442 300847 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530442 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530442 6981373211294e8c9773590461524cbb;1bef3abd1c9ec5d44ab4ac81c85fc936 1313 125480566 23312594cb15725d88d8bb48b5534283;226ae16dc61a49db3b32dce483173268 SAMEA5786293 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530442/ERR3530442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530442/ERR3530442_2.fastq.gz 1482001 WGS 300847 RANDOM 91281526;92169453 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4e395e9587b8088db5a6912fcef1baca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530442/ERR3530442_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530442/ERR3530442_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530442/300847.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530442/300847.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530442/ERR3530442_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530442/ERR3530442_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530442/300847.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530442/300847.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87626533;88494925 ERS3756435 ERX3549412 GENOMIC 292493909 2019-09-19 300847 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530442/300847.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530442/300847.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530442 300847 ERR3530441 720192 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530441 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530441 58970f8cca09d9291d8c0e8c31c161be;d8d8dadf0ca770220d9d454d0d241243 1313 288697001 9ef7e52ffda962d44819f0d07f0993de;00c31ebb88ee461807a1583938f86a8a SAMEA5785943 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530441/ERR3530441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530441/ERR3530441_2.fastq.gz 3238572 WGS 720192 RANDOM 211973216;212566638 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 00dbac3715f346975666ea3cfded2fb1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530441/ERR3530441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530441/ERR3530441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530441/720192.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530441/720192.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530441/ERR3530441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530441/ERR3530441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530441/720192.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530441/720192.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 203103564;203687466 ERS3756085 ERX3549062 GENOMIC 643135766 2019-09-19 720192 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530441/720192.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530441/720192.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530441 720192 ERR3530443 657390 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530443 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530443 645a65b049bd6dfb02ed7f45e9fb78f2;c2b0fb8e8a7beb71c3be143d9b377bcd 1313 124383991 b3be0140bbd48dd7142d04ad2f116d99;7ff6a84c0e8820a21891ec28ea030681 SAMEA5786083 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530443/ERR3530443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530443/ERR3530443_2.fastq.gz 1363008 WGS 657390 RANDOM 90730894;92073718 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eec90decfe18055fe90b7be16b356b57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530443/ERR3530443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530443/ERR3530443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530443/657390.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530443/657390.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530443/ERR3530443_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530443/ERR3530443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530443/657390.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530443/657390.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87302906;88637292 ERS3756225 ERX3549202 GENOMIC 271195025 2019-09-19 657390 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530443/657390.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530443/657390.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530443 657390 ERR3530445 717826 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530445 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530445 de008f4ee2b0b881377ded4c03ccfc9f;5cf87b9384dab8182a0c898ba97fee0e 1313 259671401 38c3faaa9dc66c567bc0ca7d49cf90c5;e494f49ff3fcdc08dbfdd6564acfee3f SAMEA5786054 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530445/ERR3530445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530445/ERR3530445_2.fastq.gz 3119333 WGS 717826 RANDOM 190879078;195020883 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c723efe68fc806b0c5ffa1e13724e80 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530445/ERR3530445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530445/ERR3530445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530445/717826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530445/717826.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530445/ERR3530445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530445/ERR3530445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530445/717826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530445/717826.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 182252790;186391980 ERS3756196 ERX3549173 GENOMIC 608225421 2019-09-19 717826 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530445/717826.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530445/717826.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530445 717826 ERR3530444 753446 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530444 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530444 13b9cb1e647e79a7324886f09a6ed18b;133b3985c24b74f43bda81f5d5cd6164 1313 167728048 2c3f59584ec09714010c68b0ee371f3e;91bdb79ea78920a26a87d839d090daaa SAMEA5785744 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530444/ERR3530444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530444/ERR3530444_2.fastq.gz 1878732 WGS 753446 RANDOM 124269473;122662837 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6e1a7056bd8ac019c25f2dc34bb30f0d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530444/ERR3530444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530444/ERR3530444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530444/753446.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530444/753446.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530444/ERR3530444_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530444/ERR3530444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530444/753446.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530444/753446.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119292495;117698581 ERS3755887 ERX3548864 GENOMIC 371259287 2019-09-19 753446 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530444/753446.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530444/753446.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530444 753446 ERR3530446 757994 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530446 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530446 146c3f5108e5db62646747e9f01c89af;e623222ac510cb6689d1f7fa7bc1a43c 1313 222425350 3327054423f8b5e8c3f5de66b85a8f3a;ca38d470526d7f2ff65c0bd4a1ee480f SAMEA5785536 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530446/ERR3530446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530446/ERR3530446_2.fastq.gz 2740266 WGS 757994 RANDOM 164488394;168023422 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7114583c88329e1c81f8ec0f19550180 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530446/ERR3530446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530446/ERR3530446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530446/757994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530446/757994.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530446/ERR3530446_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530446/ERR3530446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530446/757994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530446/757994.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 157284879;160798136 ERS3755679 ERX3548656 GENOMIC 537695669 2019-09-19 757994 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530446/757994.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530446/757994.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530446 757994 ERR3530447 756647 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530447 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530447 f520b1cc1f463b017b729f5e3f7a7696;f23fd5bac1d7140af892b9b1511b0789 1313 141055965 f257ae47e56d57c03cf0769629417f70;c73fbeb3cc9272ae7116a52db0d1b399 SAMEA5785631 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530447/ERR3530447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530447/ERR3530447_2.fastq.gz 1516855 WGS 756647 RANDOM 102177223;104252581 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f778cb5ea0c045b8f791610d204041fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530447/ERR3530447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530447/ERR3530447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530447/756647.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530447/756647.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530447/ERR3530447_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530447/ERR3530447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530447/756647.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530447/756647.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98272394;100299712 ERS3755774 ERX3548751 GENOMIC 302417785 2019-09-19 756647 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530447/756647.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530447/756647.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530447 756647 ERR3530449 759544 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530449 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530449 cb9eb6f1a2e14e67b90aec9734cab00d;ab2a5fbe410a9b834706c7015d5e57f7 1313 177155864 6bf4d3bcbeba60d00f74105eba98217b;f3b96f5d0304fa72713ebe0ae9209fed SAMEA5785463 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530449/ERR3530449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530449/ERR3530449_2.fastq.gz 2107359 WGS 759544 RANDOM 130552777;133251490 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9ca0334e5b1180b76082ee14e11efee9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530449/ERR3530449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530449/ERR3530449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530449/759544.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530449/759544.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530449/ERR3530449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530449/ERR3530449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530449/759544.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530449/759544.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124977004;127660793 ERS3755606 ERX3548583 GENOMIC 418954228 2019-09-19 759544 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530449/759544.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530449/759544.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530449 759544 ERR3530450 289706 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530450 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530450 decce16be137eb020b5a602b1e50b808;76a9da8ad1b6af6c14c5eae6a015f252 1313 243541399 f3bc7d34f700e565f6b178d4545fd2e9;74fec8463e20dd34d6bf003896e6a904 SAMEA5786305 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530450/ERR3530450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530450/ERR3530450_2.fastq.gz 2622947 WGS 289706 RANDOM 171359194;175961281 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cc4c0e2f36d723bc61229bf35bda0012 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530450/ERR3530450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530450/ERR3530450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530450/289706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530450/289706.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530450/ERR3530450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530450/ERR3530450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530450/289706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530450/289706.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 164882545;169471094 ERS3756447 ERX3549424 GENOMIC 517772722 2019-09-19 289706 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530450/289706.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530450/289706.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530450 289706 ERR3530451 720962 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530451 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530451 accea72f80cf9c2c0902656e7fd62c7e;446cdceb628e8c669b8d6adf8330aa63 1313 136085384 9e5aa70dd63ca027dc97aaf6c57e2869;2fb2faf26f085512829109ba14ddd153 SAMEA5785846 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530451/ERR3530451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530451/ERR3530451_2.fastq.gz 1391468 WGS 720962 RANDOM 95690266;99653258 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6213aeea08b30aba661130a014cb0daf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530451/ERR3530451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530451/ERR3530451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530451/720962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530451/720962.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530451/ERR3530451_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530451/ERR3530451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530451/720962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530451/720962.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92166215;96036628 ERS3755989 ERX3548966 GENOMIC 275116700 2019-09-19 720962 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530451/720962.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530451/720962.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530451 720962 ERR3530452 759539 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530452 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530452 4ea3f16096300c33f2ddd10e3693b91a;74d783de41f7905296a8239343ed2e57 1313 173366427 9cbb4742380b150f7be0ba3fd04d80b2;d4b9ee5df09fd13b988a34e2be4a234e SAMEA5785468 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530452/ERR3530452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530452/ERR3530452_2.fastq.gz 2068155 WGS 759539 RANDOM 127628341;130211591 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2cbf8e3558be0f06bf9c2696c60f7d7b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530452/ERR3530452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530452/ERR3530452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530452/759539.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530452/759539.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530452/ERR3530452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530452/ERR3530452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530452/759539.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530452/759539.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122140885;124709971 ERS3755611 ERX3548588 GENOMIC 407302993 2019-09-19 759539 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530452/759539.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530452/759539.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530452 759539 ERR3530454 308574 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530454 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530454 d7af9495aec9662bebae8bd80e32d3f3;6e9c499d7c0cf90f053f2bb3a2018cfb 1313 196892065 c174822c4667f3874238f748cdae7bdb;b73f7319c01782cd96821f30d5ee597a SAMEA5786213 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530454/ERR3530454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530454/ERR3530454_2.fastq.gz 2171203 WGS 308574 RANDOM 143530881;145139348 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 71f278d705359fcbda6d6a0f3bd816dd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530454/ERR3530454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530454/ERR3530454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530454/308574.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530454/308574.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530454/ERR3530454_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530454/ERR3530454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530454/308574.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530454/308574.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137888207;139486969 ERS3756355 ERX3549332 GENOMIC 430529093 2019-09-19 308574 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530454/308574.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530454/308574.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530454 308574 ERR3530453 318634 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530453 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530453 7e4c7f3a061b98403bc8eeb98bbb30d6;8f83efd44c703cc3c81a4ac9123c2880 1313 170279362 217ac1351fdc4f7317385046d5b05f20;0b1001b8c0b8ee461d7411de8cf732bf SAMEA5786125 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530453/ERR3530453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530453/ERR3530453_2.fastq.gz 1827185 WGS 318634 RANDOM 122236345;123765170 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2ed0048257b7206c2bc0fafb83e3277d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530453/ERR3530453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530453/ERR3530453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530453/318634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530453/318634.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530453/ERR3530453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530453/ERR3530453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530453/318634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530453/318634.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117368754;118897434 ERS3756267 ERX3549244 GENOMIC 347963698 2019-09-19 318634 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530453/318634.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530453/318634.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530453 318634 ERR3530448 720208 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530448 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530448 72315882df131db47054550e196cbd57;dfd953f7d2889c62ffbf95bff98b564f 1313 143475268 66ef11e6bd62d7c6e82193e57e97ec1f;de749ef026c5b5de2948698b4dc031a1 SAMEA5785927 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530448/ERR3530448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530448/ERR3530448_2.fastq.gz 1596861 WGS 720208 RANDOM 104134169;106513489 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2f9304dfffa32df19ccbc687704f37a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530448/ERR3530448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530448/ERR3530448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530448/720208.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530448/720208.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530448/ERR3530448_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530448/ERR3530448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530448/720208.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530448/720208.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99898570;102274803 ERS3756069 ERX3549046 GENOMIC 316030950 2019-09-19 720208 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530448/720208.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530448/720208.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530448 720208 ERR3530456 308594 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530456 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530456 542280538cb8e2c05a30a4a70d121809;4c36b5b084ed9dffaa17ca08a579bc3b 1313 181011765 210df0e62843114315aabd94fb464986;57c6bf944ccc3534134008d695337d07 SAMEA5786195 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530456/ERR3530456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530456/ERR3530456_2.fastq.gz 1986603 WGS 308594 RANDOM 131172166;134171063 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cb2fa66e0b8b3a695c714f11f0db624b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530456/ERR3530456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530456/ERR3530456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530456/308594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530456/308594.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530456/ERR3530456_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530456/ERR3530456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530456/308594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530456/308594.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125923112;128911001 ERS3756337 ERX3549314 GENOMIC 394605485 2019-09-19 308594 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530456/308594.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530456/308594.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530456 308594 ERR3530455 720206 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530455 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530455 480e47c2308029f65a39c544d4d1ac33;1708aaf15d3600c0b8616a5da037e8be 1313 226056339 b2148c18db17196cd3f1f1a42790a42e;25726484cc5e7e2b17928f801165e56e SAMEA5785929 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530455/ERR3530455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530455/ERR3530455_2.fastq.gz 2514991 WGS 720206 RANDOM 162836674;167498655 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cb02a1af5e20eac7cfb79ea3d864770c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530455/ERR3530455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530455/ERR3530455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530455/720206.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530455/720206.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530455/ERR3530455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530455/ERR3530455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530455/720206.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530455/720206.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 156312067;160966420 ERS3756071 ERX3549048 GENOMIC 497904166 2019-09-19 720206 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530455/720206.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530455/720206.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530455 720206 ERR3530457 720237 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530457 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530457 9f0b15679dc74ff274f6e59ff782d6e2;d714f5ed6a0f640a44034764e3ef67d7 1313 147517983 1386110f8f59e20fd3a0658eb9541aa5;bbd667f7c2fdfa085ce0052bac976cad SAMEA5785897 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530457/ERR3530457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530457/ERR3530457_2.fastq.gz 1633147 WGS 720237 RANDOM 106399637;109822550 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 69c21cfeddd5090d65e68bd3594bcfd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530457/ERR3530457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530457/ERR3530457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530457/720237.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530457/720237.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530457/ERR3530457_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530457/ERR3530457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530457/720237.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530457/720237.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102036663;105436392 ERS3756040 ERX3549017 GENOMIC 323697861 2019-09-19 720237 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530457/720237.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530457/720237.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530457 720237 ERR3530458 753422 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530458 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530458 063c6ae29689dc02d9898bee73b8537f;9924d2fc8dcb93b28e74e87fdcc1766e 1313 146149863 257970661ddfc6d95d7ea5c1129eb38f;da065267923585fc7faf9847b4eda1d0 SAMEA5785768 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530458/ERR3530458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530458/ERR3530458_2.fastq.gz 1589543 WGS 753422 RANDOM 104553796;108721243 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 32dead2a1f07b76ad804b55a9ee18db9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530458/ERR3530458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530458/ERR3530458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530458/753422.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530458/753422.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530458/ERR3530458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530458/ERR3530458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530458/753422.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530458/753422.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100411955;104559366 ERS3755911 ERX3548888 GENOMIC 315402117 2019-09-19 753422 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530458/753422.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530458/753422.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530458 753422 ERR3530459 756649 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530459 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530459 1028af1805315abb64ecc9da257e2b0e;dcaaf476975412be95d62ed69972e96c 1313 111030371 1c03ca8548e0d3a46ffa523ef1689d3c;0ecb474eb47f3a41b94030d4fa57c344 SAMEA5785629 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530459/ERR3530459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530459/ERR3530459_2.fastq.gz 1199094 WGS 756649 RANDOM 80622654;82067690 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f8de2a13109e5336985531b13877ce19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530459/ERR3530459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530459/ERR3530459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530459/756649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530459/756649.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530459/ERR3530459_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530459/ERR3530459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530459/756649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530459/756649.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 77637861;79054944 ERS3755772 ERX3548749 GENOMIC 238445451 2019-09-19 756649 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530459/756649.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530459/756649.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530459 756649 ERR3530460 717825 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530460 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530460 ffd3c2e28252b6b3e952d27a1e1f2936;bdb8f3decc2a2c6fcea5e543a7ddb860 1313 224663979 fdbda3a5de398775194e477a5c00eb93;4f1b815c20f78ec6ef3b7aea15bf223c SAMEA5786055 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530460/ERR3530460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530460/ERR3530460_2.fastq.gz 2666296 WGS 717825 RANDOM 164145482;169234580 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 14501ae8aa41e135d48b9ebb4a5beadd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530460/ERR3530460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530460/ERR3530460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530460/717825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530460/717825.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530460/ERR3530460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530460/ERR3530460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530460/717825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530460/717825.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 157144498;162206255 ERS3756197 ERX3549174 GENOMIC 527669576 2019-09-19 717825 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530460/717825.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530460/717825.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530460 717825 ERR3530461 308562 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530461 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530461 b70b7cef900f897390775b6967c7d544;29688bd86ea928605086c1208d4cc2ab 1313 229849496 a385ba4fe3c1997a89f106c5a17a247a;74930186291530612c0ff73fee3f3074 SAMEA5786225 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530461/ERR3530461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530461/ERR3530461_2.fastq.gz 2509834 WGS 308562 RANDOM 165520596;169645123 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b66a3da201e73ea460c3d6787f8f90e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530461/ERR3530461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530461/ERR3530461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530461/308562.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530461/308562.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530461/ERR3530461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530461/ERR3530461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530461/308562.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530461/308562.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 159083144;163188620 ERS3756367 ERX3549344 GENOMIC 497346683 2019-09-19 308562 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530461/308562.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530461/308562.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530461 308562 ERR3530462 759551 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530462 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530462 2012f57f75522415c282aca72503c2ec;5cfb5f6fc1c34672dd9ce16f43e9c789 1313 204289757 b9f58bdc51b071ab5467d308bbbbc524;ad55aa116645a605b8c75c03717b22dd SAMEA5785456 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530462/ERR3530462_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530462/ERR3530462_2.fastq.gz 2406000 WGS 759551 RANDOM 147811691;155006776 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 44ae4ccdba62cd952cb1c007b7a3d594 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530462/ERR3530462_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530462/ERR3530462_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530462/759551.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530462/759551.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530462/ERR3530462_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530462/ERR3530462_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530462/759551.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530462/759551.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 141587225;148751656 ERS3755599 ERX3548576 GENOMIC 477783022 2019-09-19 759551 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530462/759551.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530462/759551.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530462 759551 ERR3530463 753435 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530463 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530463 e8534af3269ed1873d405f3906323924;1b5e50f5b9fcc66ca7dcb0da1bfe95bf 1313 120192077 1b66ee7a87ac42f05136e115fa2b8e85;4bdc2c63cdd098a1b7f353ee84e67407 SAMEA5785755 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530463/ERR3530463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530463/ERR3530463_2.fastq.gz 1291342 WGS 753435 RANDOM 84389363;90161023 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b22032aa74d7ce5a622e90cd8c26cbc2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530463/ERR3530463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530463/ERR3530463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530463/753435.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530463/753435.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530463/ERR3530463_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530463/ERR3530463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530463/753435.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530463/753435.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81118684;86869629 ERS3755898 ERX3548875 GENOMIC 255626069 2019-09-19 753435 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530463/753435.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530463/753435.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530463 753435 ERR3530464 717924 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530464 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530464 29d2c370f73d7275c5c11bd985c908a2;33e31f8918dc52b82b993771138b94de 1313 150343048 053de26b117b147c6a8d032d5e91bff8;6338b90b60f513e3fc88efe6a05a8469 SAMEA5786011 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530464/ERR3530464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530464/ERR3530464_2.fastq.gz 1790176 WGS 717924 RANDOM 111127035;112947660 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 963f48f23f073a2fbabeb16b35fc989a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530464/ERR3530464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530464/ERR3530464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530464/717924.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530464/717924.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530464/ERR3530464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530464/ERR3530464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530464/717924.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530464/717924.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106306687;108122608 ERS3756153 ERX3549130 GENOMIC 355008830 2019-09-19 717924 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530464/717924.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530464/717924.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530464 717924 ERR3530465 755705 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530465 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530465 99c96241df6e41a276bd6c96391a954d;6866ea7abd476a97542a42dc3094e722 1313 94583559 44b308245faaa6ed40272d28e2698359;67e490ec10486bcdff88f3b152a29e7b SAMEA5785686 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530465/ERR3530465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530465/ERR3530465_2.fastq.gz 1096707 WGS 755705 RANDOM 68711299;70903373 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d2f46031d976e1e0c6b2d6ee31bbfc05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530465/ERR3530465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530465/ERR3530465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530465/755705.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530465/755705.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530465/ERR3530465_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530465/ERR3530465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530465/755705.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530465/755705.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 65883129;68070941 ERS3755829 ERX3548806 GENOMIC 213318092 2019-09-19 755705 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530465/755705.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530465/755705.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530465 755705 ERR3530466 757935 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530466 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530466 dd72f97913908020a7d75648e5a926c1;cbf506200f7f26a9eb2d0731dd8f1483 1313 161598632 47bc5761dc42e2219059c2d266822cc5;317aa5f20aca066189dfaac8f7b99478 SAMEA5785592 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530466/ERR3530466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530466/ERR3530466_2.fastq.gz 1992661 WGS 757935 RANDOM 119349077;122341139 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3f670c57567542af3032934bd556830e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530466/ERR3530466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530466/ERR3530466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530466/757935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530466/757935.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530466/ERR3530466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530466/ERR3530466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530466/757935.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530466/757935.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114043190;117039452 ERS3755735 ERX3548712 GENOMIC 384591085 2019-09-19 757935 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530466/757935.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530466/757935.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530466 757935 ERR3530467 721005 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530467 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530467 68b81674b51213ae577e3b6acce65694;fe58b68dd12c98f3503c4b4c5054c746 1313 246781960 57ecd930bc9badb0282f2b5f241b344d;30e924b365946b161761eb7644481e64 SAMEA5785804 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530467/ERR3530467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530467/ERR3530467_2.fastq.gz 2559789 WGS 721005 RANDOM 176192861;179347206 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. be35fc43a797ece18465d60b15d30eec ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530467/ERR3530467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530467/ERR3530467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530467/721005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530467/721005.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530467/ERR3530467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530467/ERR3530467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530467/721005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530467/721005.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 169670545;172783262 ERS3755947 ERX3548924 GENOMIC 507508850 2019-09-19 721005 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530467/721005.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530467/721005.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530467 721005 ERR3530468 756643 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530468 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530468 b6ebd7630f1bf39eb2730096bdd6d0af;e33dde71224edab2c3ed0efdf9bee5c3 1313 119906068 1f0aaedc661e97f509b1388804eff64f;a9db69f34271b53d6a62cbaaeee2fddd SAMEA5785635 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530468/ERR3530468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530468/ERR3530468_2.fastq.gz 1303641 WGS 756643 RANDOM 87210036;88346897 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8106008077d060731d81e57fbcfc35d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530468/ERR3530468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530468/ERR3530468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530468/756643.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530468/756643.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530468/ERR3530468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530468/ERR3530468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530468/756643.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530468/756643.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83931914;85036070 ERS3755778 ERX3548755 GENOMIC 257874782 2019-09-19 756643 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530468/756643.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530468/756643.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530468 756643 ERR3530469 759504 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530469 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530469 67ec450db26cd43b11e241099b972c74;7a374a0749997681220a0f797917b5db 1313 147720058 13ed596c577d7ab201054c12634c1b2a;3fda56cbbce74919ec3f5fde714be200 SAMEA5785503 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530469/ERR3530469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530469/ERR3530469_2.fastq.gz 1681609 WGS 759504 RANDOM 106320044;112117753 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8a22725372367b128d4da458f524da21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530469/ERR3530469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530469/ERR3530469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530469/759504.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530469/759504.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530469/ERR3530469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530469/ERR3530469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530469/759504.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530469/759504.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101857531;107652123 ERS3755646 ERX3548623 GENOMIC 334692822 2019-09-19 759504 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530469/759504.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530469/759504.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530469 759504 ERR3530470 308610 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530470 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530470 4cfa4d0eded903bc281a24529d6654b4;f419df254a0581353d08ff2a37de371c 1313 273335999 813b8129ef275e05f37412f804c83a50;38ac294b257d2de20b5bc1bf529c76fc SAMEA5786180 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530470/ERR3530470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530470/ERR3530470_2.fastq.gz 3061518 WGS 308610 RANDOM 199418700;201062629 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d5f24672eef199324f7e12953a836cc3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530470/ERR3530470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530470/ERR3530470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530470/308610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530470/308610.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530470/ERR3530470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530470/ERR3530470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530470/308610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530470/308610.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 191179381;192826339 ERS3756322 ERX3549299 GENOMIC 596466318 2019-09-19 308610 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530470/308610.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530470/308610.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530470 308610 ERR3530471 304260 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530471 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530471 b2ceae88f63589c1ad9866f240a310f0;c57c83dbe6429ed91d25e672268d6ea5 1313 157868578 2902dfcfe32111240b28d8b6daba2c7e;6db688542846ec7a57aa29ff4bf704d9 SAMEA5786263 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530471/ERR3530471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530471/ERR3530471_2.fastq.gz 1827582 WGS 304260 RANDOM 115977351;117876901 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d51c35be3ea9efff4bb97e1a4fd83d2a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530471/ERR3530471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530471/ERR3530471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530471/304260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530471/304260.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530471/ERR3530471_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530471/ERR3530471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530471/304260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530471/304260.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111154197;113043380 ERS3756405 ERX3549382 GENOMIC 362467526 2019-09-19 304260 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530471/304260.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530471/304260.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530471 304260 ERR3530472 311474 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530472 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530472 71b12ada397a2f97e7d31e2c5df3e3ac;27dac74dd985a4d498af8a4a0af8f37b 1313 230502718 b89c62d2be05b658b3eb20c6d1579ab6;c3ba2e9d12b5f9d6dbe75b39b55137b8 SAMEA5786150 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530472/ERR3530472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530472/ERR3530472_2.fastq.gz 2594407 WGS 311474 RANDOM 167659084;169704260 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fd6c09675dab8c1425624ad65aab04d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530472/ERR3530472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530472/ERR3530472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530472/311474.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530472/311474.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530472/ERR3530472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530472/ERR3530472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530472/311474.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530472/311474.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 160859352;162917182 ERS3756292 ERX3549269 GENOMIC 511925777 2019-09-19 311474 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530472/311474.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530472/311474.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530472 311474 ERR3530473 756621 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530473 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530473 1d7713c2435a94fa85f546c5a92ef2f2;e13a86da1513c0f2fdfb736a3822dea1 1313 126756571 c2c8e2d6aea728a9080259581db77e9b;9a96084be38b73c680bc2fa16e3ccd35 SAMEA5785656 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530473/ERR3530473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530473/ERR3530473_2.fastq.gz 1359895 WGS 756621 RANDOM 92025895;93259007 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eedf3854adefb8062f3151fea072bb07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530473/ERR3530473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530473/ERR3530473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530473/756621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530473/756621.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530473/ERR3530473_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530473/ERR3530473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530473/756621.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530473/756621.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88601228;89805802 ERS3755799 ERX3548776 GENOMIC 270127369 2019-09-19 756621 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530473/756621.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530473/756621.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530473 756621 ERR3530474 308605 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530474 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530474 c8882f2b06865cf953fd1af91dec8b6e;f0e06ab4d955988ced5c9d84797fbf7d 1313 206095898 89ff0ef0fdb215d5456904cbf6da8b1b;46c165bcb8e5a69b7ecd65636ebf3070 SAMEA5786185 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530474/ERR3530474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530474/ERR3530474_2.fastq.gz 2273212 WGS 308605 RANDOM 149767124;152263361 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c196a624224b2032f531b42197dba2e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530474/ERR3530474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530474/ERR3530474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530474/308605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530474/308605.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530474/ERR3530474_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530474/ERR3530474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530474/308605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530474/308605.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143846456;146335453 ERS3756327 ERX3549304 GENOMIC 451032492 2019-09-19 308605 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530474/308605.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530474/308605.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530474 308605 ERR3530475 717902 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530475 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530475 7cba2b8cdcbb8e171dd268e2ab7897fd;9934731f316c6e0a8254e6fa07eaff89 1313 191406562 ec8da48c2d32c293ec14e2079a95abd4;2d7508147ceb20b4dc69500c541ea811 SAMEA5786022 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530475/ERR3530475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530475/ERR3530475_2.fastq.gz 2297144 WGS 717902 RANDOM 141744267;143821711 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3a437e056050d3d8d5e71139d5b5cbec ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530475/ERR3530475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530475/ERR3530475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530475/717902.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530475/717902.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530475/ERR3530475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530475/ERR3530475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530475/717902.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530475/717902.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135727886;137792772 ERS3756164 ERX3549141 GENOMIC 457098449 2019-09-19 717902 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530475/717902.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530475/717902.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530475 717902 ERR3530476 753479 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530476 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530476 c48e36d3463efdb08a2e7b2f3b39b0d1;807e2c34397edc239a7b2c6db7ac841a 1313 74110213 225dae9bf9bb5c7729db0a870a578359;2f6de40c67d2527ee70058de2103ec2c SAMEA5785713 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530476/ERR3530476_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530476/ERR3530476_2.fastq.gz 809649 WGS 753479 RANDOM 53433665;55045748 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f8a1721366cb56da6dfbcd0875ff7268 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530476/ERR3530476_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530476/ERR3530476_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530476/753479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530476/753479.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530476/ERR3530476_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530476/ERR3530476_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530476/753479.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530476/753479.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 51413884;53026333 ERS3755856 ERX3548833 GENOMIC 159972930 2019-09-19 753479 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530476/753479.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530476/753479.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530476 753479 ERR3530477 720200 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530477 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530477 c44b291f80a064c6f5030aaae8811f90;13292383852f7cbc72706bd5682b906d 1313 265258968 5c9f34a12cbea94263915b6c4ee0d1a3;1016ebddd4c275d8f9d0a8c7930c21f0 SAMEA5785935 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530477/ERR3530477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530477/ERR3530477_2.fastq.gz 3004972 WGS 720200 RANDOM 194882175;195394451 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9da6584b3f299d9abd04a1156a7bc3f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530477/ERR3530477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530477/ERR3530477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530477/720200.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530477/720200.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530477/ERR3530477_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530477/ERR3530477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530477/720200.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530477/720200.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 186818006;187336619 ERS3756077 ERX3549054 GENOMIC 595369883 2019-09-19 720200 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530477/720200.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530477/720200.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530477 720200 ERR3530479 308600 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530479 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530479 0265640ee01aa62d8492f594a54c6d9d;f50d64157949a7f7461764865945e885 1313 176231174 b52dcc7bce5a94373f2ab251aa29c68e;6677d8c50a3074324660bf795575b623 SAMEA5786190 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530479/ERR3530479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530479/ERR3530479_2.fastq.gz 1935728 WGS 308600 RANDOM 128289354;130155004 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 47efc7fb6b938fef6ef5c805ae83d334 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530479/ERR3530479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530479/ERR3530479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530479/308600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530479/308600.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530479/ERR3530479_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530479/ERR3530479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530479/308600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530479/308600.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123158588;125002639 ERS3756332 ERX3549309 GENOMIC 383872849 2019-09-19 308600 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530479/308600.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530479/308600.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530479 308600 ERR3530481 308625 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530481 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530481 fca08d0f662893dc7e3d5cdf4225f3c9;e9ec665554a020c50ee027f8e453623a 1313 178591047 85c946e6bca79cbe38ac4674ce75baa7;d4deadfd60ddfa2be33afcac00eb7983 SAMEA5786169 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530481/ERR3530481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530481/ERR3530481_2.fastq.gz 1962549 WGS 308625 RANDOM 129441024;132562406 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 084fad9354b87a5d5b37d04cd1dfbaae ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530481/ERR3530481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530481/ERR3530481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530481/308625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530481/308625.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530481/ERR3530481_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530481/ERR3530481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530481/308625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530481/308625.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124274429;127375979 ERS3756311 ERX3549288 GENOMIC 389953382 2019-09-19 308625 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530481/308625.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530481/308625.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530481 308625 ERR3530480 308624 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530480 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530480 b91d242a4d6e4f20e93864f645236c12;306befc2c11f1dd063479e8e013e7ffe 1313 211719998 9938f1423d415efacb72b860bc1d4195;ed23acf10a6350c3eae45487a7eade8b SAMEA5786170 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530480/ERR3530480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530480/ERR3530480_2.fastq.gz 2338998 WGS 308624 RANDOM 153707570;156354849 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 73e8a04964110ebd3432a68f2ae83a2f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530480/ERR3530480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530480/ERR3530480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530480/308624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530480/308624.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530480/ERR3530480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530480/ERR3530480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530480/308624.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530480/308624.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 147681877;150322260 ERS3756312 ERX3549289 GENOMIC 463292151 2019-09-19 308624 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530480/308624.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530480/308624.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530480 308624 ERR3530482 753449 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530482 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530482 b538b882b0e4af0a14bca9b8aca9f8d9;65554dc5ffafef509b6da5ca871538df 1313 93953075 965093a4f516d2d64518be61502fcf25;2fdab3af4b89291772d8e26a879017d0 SAMEA5785741 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530482/ERR3530482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530482/ERR3530482_2.fastq.gz 1049967 WGS 753449 RANDOM 69558146;69047629 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3a3f841dd65dad3f21ceccfd81d25d29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530482/ERR3530482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530482/ERR3530482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530482/753449.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530482/753449.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530482/ERR3530482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530482/ERR3530482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530482/753449.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530482/753449.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66888443;66379574 ERS3755884 ERX3548861 GENOMIC 208875598 2019-09-19 753449 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530482/753449.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530482/753449.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530482 753449 ERR3530483 759531 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530483 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530483 056789a07602e7f8db611901cf3d5a8c;9a5d35d416bfe95c954a4e1d2a774a7e 1313 174932210 d7f75bea0234efeb91ebee3b2491168c;f94281755c0d75173c0b8d10c1c4e5d1 SAMEA5785476 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530483/ERR3530483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530483/ERR3530483_2.fastq.gz 2055310 WGS 759531 RANDOM 127421917;132450525 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0673f75a9b84ab6ec612bcd6092045da ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530483/ERR3530483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530483/ERR3530483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530483/759531.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530483/759531.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530483/ERR3530483_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530483/ERR3530483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530483/759531.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530483/759531.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 121973504;126998080 ERS3755619 ERX3548596 GENOMIC 408219936 2019-09-19 759531 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530483/759531.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530483/759531.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530483 759531 ERR3530484 756645 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530484 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530484 0a7207f7caade4df22dfac60c9e78de6;4ada58ad3a2d55fe9e66e0e58c942bf3 1313 167190096 5c37eeba8b12b1a2ebb30ffdfe29b09f;de15a0cca6fc6f3bf4f8d38088a08ada SAMEA5785633 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530484/ERR3530484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530484/ERR3530484_2.fastq.gz 1810156 WGS 756645 RANDOM 121591259;123671245 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 35fb4f8225e1b753223ca0518bb07a0f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530484/ERR3530484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530484/ERR3530484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530484/756645.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530484/756645.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530484/ERR3530484_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530484/ERR3530484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530484/756645.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530484/756645.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116831388;118879348 ERS3755776 ERX3548753 GENOMIC 360744832 2019-09-19 756645 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530484/756645.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530484/756645.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530484 756645 ERR3530535 757970 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530535 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530535 d8a06b2b931306fd8044fc905fefd21a;97660ea376b5f7f065b401dbebdfc988 1313 94846979 3ad90d2396d43af500a0cac4ecd67662;7aed985da99a182e77ceb1b942c4c4a4 SAMEA5785560 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530535/ERR3530535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530535/ERR3530535_2.fastq.gz 1141106 WGS 757970 RANDOM 70235017;71912671 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 861195b569030a0a3776bd3977c04258 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530535/ERR3530535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530535/ERR3530535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530535/757970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530535/757970.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530535/ERR3530535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530535/ERR3530535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530535/757970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530535/757970.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 67323879;68996219 ERS3755703 ERX3548680 GENOMIC 227097207 2019-09-19 757970 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530535/757970.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530535/757970.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530535 757970 ERR3530478 717864 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530478 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530478 da54e88337b158266a1d7fad5b03ca2e;030c3ffc75fe2b35a6253b799edadfe0 1313 132463653 4b05dfcbb5db563bee1ab52094624474;5e1a54aaf94ace966090e538594a6a19 SAMEA5786040 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530478/ERR3530478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530478/ERR3530478_2.fastq.gz 1558371 WGS 717864 RANDOM 96004688;101189856 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7a9919deddcba0e3b3b0f3ac5a457c2c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530478/ERR3530478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530478/ERR3530478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530478/717864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530478/717864.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530478/ERR3530478_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530478/ERR3530478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530478/717864.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530478/717864.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91966175;97140274 ERS3756182 ERX3549159 GENOMIC 309720401 2019-09-19 717864 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530478/717864.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530478/717864.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530478 717864 ERR3530489 720219 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530489 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530489 70145846a1d3d61f3205d3373e2eca8d;d76ecab21eabbd1bd964a48ef3923106 1313 149706918 236f8dec4779f346942af1e64967d97a;6e16e6da6dc8b26bf7b981dd48dbd060 SAMEA5785915 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530489/ERR3530489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530489/ERR3530489_2.fastq.gz 1662157 WGS 720219 RANDOM 109070573;110801681 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5a3965eee6751d1e2fc4cc74fbfe695d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530489/ERR3530489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530489/ERR3530489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530489/720219.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530489/720219.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530489/ERR3530489_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530489/ERR3530489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530489/720219.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530489/720219.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104670559;106378906 ERS3756058 ERX3549035 GENOMIC 330464325 2019-09-19 720219 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530489/720219.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530489/720219.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530489 720219 ERR3530486 759521 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530486 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530486 89f6c8d40e2ac454a291f39a76847252;c06132272a5e773b0de09a64a5fd552a 1313 181904755 e4aba8623675b4b66b4df6fac69a5227;fd24dea5427d78f4e0662a380ab50664 SAMEA5785486 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530486/ERR3530486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530486/ERR3530486_2.fastq.gz 2161243 WGS 759521 RANDOM 133614865;137139892 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ca00b0dd211129fdcadc00d68f1b67c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530486/ERR3530486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530486/ERR3530486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530486/759521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530486/759521.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530486/ERR3530486_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530486/ERR3530486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530486/759521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530486/759521.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127942784;131457673 ERS3755629 ERX3548606 GENOMIC 429820163 2019-09-19 759521 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530486/759521.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530486/759521.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530486 759521 ERR3530487 308585 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530487 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530487 59c25a698daa601db0a504d69b3dc602;aaa24f327cc0d8fa7122bcd788d95b45 1313 196269531 9a2d005258382530e45ea0a9f6ad37dc;e96858b417ec20bb728448c8925c0193 SAMEA5786203 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530487/ERR3530487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530487/ERR3530487_2.fastq.gz 2157144 WGS 308585 RANDOM 141917572;145336264 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 678e884deb3daaeee619cb76cd0b8f0f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530487/ERR3530487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530487/ERR3530487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530487/308585.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530487/308585.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530487/ERR3530487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530487/ERR3530487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530487/308585.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530487/308585.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136268635;139667963 ERS3756345 ERX3549322 GENOMIC 426864582 2019-09-19 308585 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530487/308585.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530487/308585.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530487 308585 ERR3530490 308635 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530490 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530490 3c37f74eda881b9f0fe82f70df2bc49f;cb022c13c5bc34cdf45cbee3c320b219 1313 252605589 e6439859177935c634f3866ef8383c19;3129ef5da65c3637907cda5fc6e2584c SAMEA5786159 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530490/ERR3530490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530490/ERR3530490_2.fastq.gz 2792470 WGS 308635 RANDOM 182763292;186617677 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9e19234f3f3ff8644e5c74bec65135c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530490/ERR3530490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530490/ERR3530490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530490/308635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530490/308635.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530490/ERR3530490_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530490/ERR3530490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530490/308635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530490/308635.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 175482201;179325028 ERS3756301 ERX3549278 GENOMIC 551029817 2019-09-19 308635 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530490/308635.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530490/308635.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530490 308635 ERR3530488 308561 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530488 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530488 5d91d2c651109608f0c09e7524ab2aeb;41eeb435217b6a8fb22ef8e011a32ebb 1313 199309212 018b6cfd7836e12f091e2ad874795f0e;3fe5c6efb34be08e10447136757b204c SAMEA5786226 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530488/ERR3530488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530488/ERR3530488_2.fastq.gz 2210821 WGS 308561 RANDOM 145273966;147186847 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e45e7f1187ffb2b9e8cf205f6ca02c04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530488/ERR3530488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530488/ERR3530488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530488/308561.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530488/308561.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530488/ERR3530488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530488/ERR3530488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530488/308561.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530488/308561.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139528632;141430106 ERS3756368 ERX3549345 GENOMIC 437608053 2019-09-19 308561 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530488/308561.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530488/308561.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530488 308561 ERR3530491 756635 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530491 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530491 e69f1ce404d6abaaf2a3b228b4650f9b;c896cf681c964d3b12047ea3396c415f 1313 161253292 dacad15fca546c926c13bd133a3f4c41;81521720f0f6d7c7e5e52fb25d5cb2c2 SAMEA5785642 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530491/ERR3530491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530491/ERR3530491_2.fastq.gz 1741878 WGS 756635 RANDOM 116967065;119125656 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f5c0b33f204b4cf8ddafc058068caa91 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530491/ERR3530491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530491/ERR3530491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530491/756635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530491/756635.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530491/ERR3530491_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530491/ERR3530491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530491/756635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530491/756635.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112357215;114475950 ERS3755785 ERX3548762 GENOMIC 346864809 2019-09-19 756635 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530491/756635.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530491/756635.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530491 756635 ERR3530493 717942 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530493 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530493 e444a58137a19c9f2a4d02cb4cf5e747;25c3d36ae0cdee22f9915cb5ba9880c1 1313 146766128 8b94063a886786557e095cb40ee146a9;9ac8729bc1069b5fead1e9c06a96a7aa SAMEA5785998 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530493/ERR3530493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530493/ERR3530493_2.fastq.gz 1781831 WGS 717942 RANDOM 109444786;110582608 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 194cae24cb6da6503e02b20cd18e74b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530493/ERR3530493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530493/ERR3530493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530493/717942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530493/717942.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530493/ERR3530493_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530493/ERR3530493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530493/717942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530493/717942.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104662048;105789296 ERS3756140 ERX3549117 GENOMIC 355043902 2019-09-19 717942 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530493/717942.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530493/717942.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530493 717942 ERR3530492 308596 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530492 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530492 a53e2eb5a721c2fd42948e3db9d04823;2cd6706993bf69128968a7cdb3b6434b 1313 183839542 4ec450202c6f167293dcc9ad5df67f28;5e3d50af54a6c1e5e54852bcea04d1ed SAMEA5786193 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530492/ERR3530492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530492/ERR3530492_2.fastq.gz 2024242 WGS 308596 RANDOM 133265868;136001926 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 48011f384d2da297145d55ec4e52797d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530492/ERR3530492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530492/ERR3530492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530492/308596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530492/308596.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530492/ERR3530492_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530492/ERR3530492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530492/308596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530492/308596.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127900193;130623686 ERS3756335 ERX3549312 GENOMIC 399937899 2019-09-19 308596 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530492/308596.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530492/308596.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530492 308596 ERR3530494 308579 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530494 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530494 640ebb1f566d318e09a37ce95edd7c9b;873d390f6d3067e1d2ced6cf7e3ed102 1313 184243385 47d570115a3b028e09e27bcf71f8331d;2a9699ea9d9e08175919c93078dae068 SAMEA5786208 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530494/ERR3530494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530494/ERR3530494_2.fastq.gz 2012634 WGS 308579 RANDOM 132902515;136548767 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4048d47695375c0b6b0ee24db61f4e32 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530494/ERR3530494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530494/ERR3530494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530494/308579.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530494/308579.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530494/ERR3530494_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530494/ERR3530494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530494/308579.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530494/308579.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127576804;131203245 ERS3756350 ERX3549327 GENOMIC 398296509 2019-09-19 308579 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530494/308579.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530494/308579.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530494 308579 ERR3530495 753475 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530495 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530495 ccf4599a868bbd76c31ddd8973699b52;de12c049545e124f4c7837c17c6ccb8e 1313 90320096 831596ff361536b7b8ac4e85cf250a30;1ef7d9871b34838bd3e909696371041a SAMEA5785717 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530495/ERR3530495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530495/ERR3530495_2.fastq.gz 991884 WGS 753475 RANDOM 65792835;66809766 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0719339f53156839cf9022a18b203195 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530495/ERR3530495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530495/ERR3530495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530495/753475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530495/753475.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530495/ERR3530495_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530495/ERR3530495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530495/753475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530495/753475.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 63289667;64302833 ERS3755860 ERX3548837 GENOMIC 197650215 2019-09-19 753475 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530495/753475.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530495/753475.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530495 753475 ERR3530500 660179 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530500 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530500 d8baa2ee1466ad0c699b83ae42082daf;1d2639b205eaa21de4dad172fd402e66 1313 696552391 192a462b049934bf151108c1176e4ec8;54b1bb14bffd1cf0f87a8ab7f2b9679a SAMEA5786075 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530500/ERR3530500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530500/ERR3530500_2.fastq.gz 8783502 WGS 660179 RANDOM 499530391;526827978 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 26118b04120ddbc0a60335c9226c2c34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530500/ERR3530500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530500/ERR3530500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530500/660179.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530500/660179.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530500/ERR3530500_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530500/ERR3530500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530500/660179.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530500/660179.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 474207349;501591517 ERS3756217 ERX3549194 GENOMIC 1582625015 2019-09-19 660179 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530500/660179.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530500/660179.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530500 660179 ERR3530497 717947 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530497 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530497 1c2f7a5e7cb930a2010a08814fe7e87a;1499f13f456c3952d71dabd2e68a1cce 1313 171875793 b3c4f1bbba009d09a6501517e9a83ddb;c714c591377e3dea5711d415151eadc4 SAMEA5785993 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530497/ERR3530497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530497/ERR3530497_2.fastq.gz 2003317 WGS 717947 RANDOM 125472518;129064484 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 91c20f8c151b752d23d5e8bc2042c56f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530497/ERR3530497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530497/ERR3530497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530497/717947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530497/717947.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530497/ERR3530497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530497/ERR3530497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530497/717947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530497/717947.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120129418;123714802 ERS3756135 ERX3549112 GENOMIC 394492385 2019-09-19 717947 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530497/717947.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530497/717947.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530497 717947 ERR3530499 304262 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530499 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530499 7314675be4ba19f0eed99ef5f97abb66;8b0a2fbcb1b856812d860a77ec08ef74 1313 161824597 e741333356057c439be361efc9249e1f;72d24cd8e547b70697cb593b63839075 SAMEA5786261 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530499/ERR3530499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530499/ERR3530499_2.fastq.gz 1864772 WGS 304262 RANDOM 118976546;120741368 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 235033ab47ee97a7a20132db3277f70c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530499/ERR3530499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530499/ERR3530499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530499/304262.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530499/304262.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530499/ERR3530499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530499/ERR3530499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530499/304262.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530499/304262.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114069703;115830547 ERS3756403 ERX3549380 GENOMIC 371215718 2019-09-19 304262 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530499/304262.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530499/304262.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530499 304262 ERR3530498 720253 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530498 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530498 fec498bba64b27e275c899ae551e7043;e7039e5c113c39636227b88441faffed 1313 223758210 d3149d8da5708c30157891b1557e5064;68aa8dc65419827e78737fe0a7e6351b SAMEA5785881 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530498/ERR3530498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530498/ERR3530498_2.fastq.gz 2517440 WGS 720253 RANDOM 164259940;164245467 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4584d3e420b219c249d0f226b0e76e8f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530498/ERR3530498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530498/ERR3530498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530498/720253.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530498/720253.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530498/ERR3530498_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530498/ERR3530498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530498/720253.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530498/720253.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 157763941;157746364 ERS3756024 ERX3549001 GENOMIC 498324689 2019-09-19 720253 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530498/720253.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530498/720253.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530498 720253 ERR3530496 720975 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530496 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530496 17ba7f43ac0b3a434e475ab6b6e1cb23;be068501a7365b4afaaa573c8d40aaff 1313 316736021 9a3e3bf2cd210528fedbc84b37d38bd2;eef37d528321313e9cc44a5ddc196686 SAMEA5785833 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530496/ERR3530496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530496/ERR3530496_2.fastq.gz 3286120 WGS 720975 RANDOM 224693350;232014096 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1a42b39af9f2a813a923a59d6416eec4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530496/ERR3530496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530496/ERR3530496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530496/720975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530496/720975.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530496/ERR3530496_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530496/ERR3530496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530496/720975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530496/720975.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 215722560;222943973 ERS3755976 ERX3548953 GENOMIC 647512710 2019-09-19 720975 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530496/720975.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530496/720975.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530496 720975 ERR3530501 757988 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530501 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530501 710fcdd569d0d06e6dd48ab3d78bacb3;0d3c120b708b0689e6650c24b9eb1b91 1313 145691167 dff4559b178a4432bf4ed85043277eee;8c9cc9d760a17f4fcb5698f582df14ef SAMEA5785542 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530501/ERR3530501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530501/ERR3530501_2.fastq.gz 1758193 WGS 757988 RANDOM 107503389;110850414 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 66a0faa904a50291a793e91d48e8d179 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530501/ERR3530501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530501/ERR3530501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530501/757988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530501/757988.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530501/ERR3530501_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530501/ERR3530501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530501/757988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530501/757988.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102830031;106167848 ERS3755685 ERX3548662 GENOMIC 350035414 2019-09-19 757988 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530501/757988.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530501/757988.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530501 757988 ERR3530505 759552 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530505 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530505 0bcdcb8710ce530a96abcd1578e93eba;ede2386df5849cc00368e5feb58da3d6 1313 157221249 bc12a74f86eebcf4b1dea25cb9d786dc;1147270d343cc9787fd31fb0b9fa5e46 SAMEA5785455 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530505/ERR3530505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530505/ERR3530505_2.fastq.gz 1864855 WGS 759552 RANDOM 114358235;119253687 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d6064b858c077c18bbff1e4b8d2d05c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530505/ERR3530505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530505/ERR3530505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530505/759552.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530505/759552.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530505/ERR3530505_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530505/ERR3530505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530505/759552.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530505/759552.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109371553;114271551 ERS3755598 ERX3548575 GENOMIC 365799478 2019-09-19 759552 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530505/759552.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530505/759552.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530505 759552 ERR3530503 717926 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530503 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530503 5cf290766ed81f4c32c14fafdc8e6771;daef81df4f1499fba4b883f619683ec6 1313 110209700 1792a973d1611499fcfe32fa54b3d3b2;65e149dd5dceed92ee51314133d46253 SAMEA5786010 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530503/ERR3530503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530503/ERR3530503_2.fastq.gz 1293604 WGS 717926 RANDOM 80885210;83279577 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cf855efa1e5d14cd3316d6822430eddc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530503/ERR3530503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530503/ERR3530503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530503/717926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530503/717926.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530503/ERR3530503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530503/ERR3530503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530503/717926.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530503/717926.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 77613744;79997383 ERS3756152 ERX3549129 GENOMIC 257885816 2019-09-19 717926 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530503/717926.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530503/717926.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530503 717926 ERR3530555 758023 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530555 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530555 5ede205b4cda56a77e9422dc67207fef;1ca2ff775296d980619143e1e2f97633 1313 97818919 f188d38f282d6de0d8c4de541ff469eb;3f919935a89ea7e607e3cd192172ec2b SAMEA5785508 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530555/ERR3530555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530555/ERR3530555_2.fastq.gz 1167861 WGS 758023 RANDOM 71296038;74680163 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eba5f07636b270de024c48724fd54703 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530555/ERR3530555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530555/ERR3530555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530555/758023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530555/758023.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530555/ERR3530555_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530555/ERR3530555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530555/758023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530555/758023.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 68312767;71688306 ERS3755651 ERX3548628 GENOMIC 231882538 2019-09-19 758023 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530555/758023.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530555/758023.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530555 758023 ERR3530504 308583 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530504 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530504 3bf15c8a9071f9894e5f18c9e4499ba6;f63c8cfeefd71fa34e9400cfe8faa07a 1313 153793976 5906754650a310e4a825daf9f1a2471c;38a32afd29fb0b7bf25bad10f1d43a9c SAMEA5786205 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530504/ERR3530504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530504/ERR3530504_2.fastq.gz 1709703 WGS 308583 RANDOM 111953508;114055268 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8ceb2f546c1e8509a6fc0c230cb65574 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530504/ERR3530504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530504/ERR3530504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530504/308583.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530504/308583.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530504/ERR3530504_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530504/ERR3530504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530504/308583.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530504/308583.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 107424278;109514655 ERS3756347 ERX3549324 GENOMIC 335504551 2019-09-19 308583 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530504/308583.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530504/308583.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530504 308583 ERR3530506 753448 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530506 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530506 c76c7d94ca773e54000dac7d7d0bfd0e;670e3e4fdb386bd12d97d34c2bbc348d 1313 74204459 dda9f1c0ac59e9affd4dc5fcddbba777;ac9aa60daf10774deb4d3541834a12f7 SAMEA5785742 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530506/ERR3530506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530506/ERR3530506_2.fastq.gz 845271 WGS 753448 RANDOM 55282811;54157203 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f512d6efad2f33c6f95b56e216761f89 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530506/ERR3530506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530506/ERR3530506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530506/753448.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530506/753448.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530506/ERR3530506_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530506/ERR3530506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530506/753448.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530506/753448.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 53156464;52043799 ERS3755885 ERX3548862 GENOMIC 163529286 2019-09-19 753448 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530506/753448.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530506/753448.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530506 753448 ERR3530508 717914 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530508 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530508 cb388c677e2aef0a2a8176a5d1fb47cf;c04cd3e8566a937a5a198098330dc5e5 1313 93197906 c019624b729da8f4432bf550b00c8ae9;195336955938739ac002a870edb7f103 SAMEA5786016 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530508/ERR3530508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530508/ERR3530508_2.fastq.gz 1081264 WGS 717914 RANDOM 68082794;70524999 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 30891bb0345df05f0c757f7b9935f9be ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530508/ERR3530508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530508/ERR3530508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530508/717914.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530508/717914.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530508/ERR3530508_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530508/ERR3530508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530508/717914.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530508/717914.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 65327923;67754842 ERS3756158 ERX3549135 GENOMIC 215841989 2019-09-19 717914 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530508/717914.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530508/717914.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530508 717914 ERR3530507 300868 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530507 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530507 7791bb5c5a3e09dcf3e400cfe5b68e08;3afb7747d75321e34fe062a73a5564ed 1313 238940868 07604fbee0b991d4ac6802824262df32;db92f8d01e4fcbf0fea6e5495cb269c6 SAMEA5786272 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530507/ERR3530507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530507/ERR3530507_2.fastq.gz 2822787 WGS 300868 RANDOM 173104018;175258183 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4a3102e23e86af3b1dc50810b30a0133 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530507/ERR3530507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530507/ERR3530507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530507/300868.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530507/300868.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530507/ERR3530507_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530507/ERR3530507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530507/300868.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530507/300868.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 165920361;168052981 ERS3756414 ERX3549391 GENOMIC 557959230 2019-09-19 300868 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530507/300868.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530507/300868.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530507 300868 ERR3530509 657386 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530509 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530509 99663863f4e148a64303b8e3b4c26ca6;44c56242153db3a81afd2f7db755b4e0 1313 214145643 d64a49ffe3f657c7cff145ae1748f6ac;3b54a5b54a79deb2b187de1016303743 SAMEA5786087 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530509/ERR3530509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530509/ERR3530509_2.fastq.gz 2360170 WGS 657386 RANDOM 155833763;157651833 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 99d24cc7cb4982cb78554e35a75769b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530509/ERR3530509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530509/ERR3530509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530509/657386.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530509/657386.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530509/ERR3530509_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530509/ERR3530509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530509/657386.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530509/657386.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 149826607;151641711 ERS3756229 ERX3549206 GENOMIC 467299491 2019-09-19 657386 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530509/657386.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530509/657386.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530509 657386 ERR3530510 720967 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530510 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530510 818def98be0b73bda9346b3134fb7a5e;a7c80b7b6a67279c871bfa16f0c458d7 1313 295904156 c4bb926c861c1fe3df4ac1ecf634d046;b6bab8da210720da109dd3be40fe97c0 SAMEA5785841 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530510/ERR3530510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530510/ERR3530510_2.fastq.gz 3088580 WGS 720967 RANDOM 213481480;214782766 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c8707668d6ac7d23ca0a900a1ccba48f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530510/ERR3530510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530510/ERR3530510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530510/720967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530510/720967.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530510/ERR3530510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530510/ERR3530510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530510/720967.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530510/720967.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 205249212;206516542 ERS3755984 ERX3548961 GENOMIC 613068293 2019-09-19 720967 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530510/720967.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530510/720967.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530510 720967 ERR3530511 756594 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530511 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530511 8b599d8d2b80f9ea86dc2ed0dd519a19;2ca26df0c4f9ced02a4352fa8d24a690 1313 196446386 59265801bfe14102a9581e75bcece75f;4b495144fd0fb0f94dcea7ac50d1e279 SAMEA5785683 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530511/ERR3530511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530511/ERR3530511_2.fastq.gz 2100961 WGS 756594 RANDOM 140552524;145898041 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3409d1a848d7c5d0985ac16756d9223a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530511/ERR3530511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530511/ERR3530511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530511/756594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530511/756594.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530511/ERR3530511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530511/ERR3530511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530511/756594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530511/756594.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135029434;140311708 ERS3755826 ERX3548803 GENOMIC 418206859 2019-09-19 756594 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530511/756594.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530511/756594.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530511 756594 ERR3530514 758013 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530514 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530514 91bd17403d355672f1eae2a6bfe82213;a2b412f8e56e42743f7437df7b473cf9 1313 122837764 3232391cc920c5c4115a0ce46d6cdbcf;ffa4e84c36c5e744c47d67ac8738b558 SAMEA5785518 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530514/ERR3530514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530514/ERR3530514_2.fastq.gz 1488967 WGS 758013 RANDOM 89826384;93792274 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 27201ce93454575a93b9ec06c58036ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530514/ERR3530514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530514/ERR3530514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530514/758013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530514/758013.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530514/ERR3530514_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530514/ERR3530514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530514/758013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530514/758013.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85956900;89914405 ERS3755661 ERX3548638 GENOMIC 292613576 2019-09-19 758013 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530514/758013.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530514/758013.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530514 758013 ERR3530558 757982 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530558 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530558 b614de9049a471b0d55622e0713c0128;024d09ccee6b276448448708fc50a1e2 1313 156821926 b6e32dea3831b4e9b0a308c82ba56b0e;faf605dc8434b83d7cd19036e971fd34 SAMEA5785548 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530558/ERR3530558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530558/ERR3530558_2.fastq.gz 1917178 WGS 757982 RANDOM 115976240;118893972 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ce130d2f045b555b1467ce0fe2557462 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530558/ERR3530558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530558/ERR3530558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530558/757982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530558/757982.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530558/ERR3530558_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530558/ERR3530558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530558/757982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530558/757982.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110836456;113757444 ERS3755691 ERX3548668 GENOMIC 377745770 2019-09-19 757982 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530558/757982.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530558/757982.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530558 757982 ERR3530512 757938 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530512 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530512 3a216dd6db41d301213c32ef74e21a1a;368719f7bc51e73190b35752861ebe37 1313 173261809 1e866c468b9786d274c269deb562d1f7;e68101302263fd9ede158600333fbf91 SAMEA5785590 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530512/ERR3530512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530512/ERR3530512_2.fastq.gz 2081054 WGS 757938 RANDOM 126175009;132580200 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6b75d4617371eebd3e331e7d145a842c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530512/ERR3530512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530512/ERR3530512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530512/757938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530512/757938.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530512/ERR3530512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530512/ERR3530512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530512/757938.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530512/757938.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120621028;127020969 ERS3755733 ERX3548710 GENOMIC 414343884 2019-09-19 757938 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530512/757938.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530512/757938.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530512 757938 ERR3530515 763050 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530515 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530515 6a70d3b68071c699408f21cd36a2fd69;d17683ec6f78eff6745dbb153c7aea05 1313 58888846 f5379eb43ecc49b36bc38bc67e0243ed;9b94e8c7d509b9592a3ae231262fffab SAMEA5785433 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530515/ERR3530515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530515/ERR3530515_2.fastq.gz 626880 WGS 763050 RANDOM 43432865;42679787 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6851e8d9a29caeeaeac076c1496a3e31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530515/ERR3530515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530515/ERR3530515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530515/763050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530515/763050.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530515/ERR3530515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530515/ERR3530515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530515/763050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530515/763050.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 42065859;41312883 ERS3755576 ERX3548553 GENOMIC 124914994 2019-09-19 763050 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530515/763050.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530515/763050.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530515 763050 ERR3530516 755703 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530516 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530516 6601e0b4240790d6cde61bca90b9bbd0;3ff2564540b8a815b830044a56ad80d4 1313 92757457 47a8b9e975fc5a6a98056750b2dfb29d;9bc4d6b1606f787af81512f282691228 SAMEA5785688 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530516/ERR3530516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530516/ERR3530516_2.fastq.gz 1055541 WGS 755703 RANDOM 67187423;69822750 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ce82eacbcf0c797102697f3296a1fc63 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530516/ERR3530516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530516/ERR3530516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530516/755703.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530516/755703.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530516/ERR3530516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530516/ERR3530516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530516/755703.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530516/755703.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 64507954;67131016 ERS3755831 ERX3548808 GENOMIC 210169367 2019-09-19 755703 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530516/755703.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530516/755703.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530516 755703 ERR3530517 756631 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530517 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530517 04b2190fc60ab1ac6be5afba50923df1;6e4d580014de96a84c7147a9e0570a99 1313 200347024 021865c3b46b0528f427430d34555e1a;bd785a0951621d80b38cee56534c303f SAMEA5785646 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530517/ERR3530517_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530517/ERR3530517_2.fastq.gz 2173381 WGS 756631 RANDOM 146303197;146945234 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d1871702a243f37641efb7148edb7635 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530517/ERR3530517_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530517/ERR3530517_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530517/756631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530517/756631.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530517/ERR3530517_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530517/ERR3530517_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530517/756631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530517/756631.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140618648;141246411 ERS3755789 ERX3548766 GENOMIC 432375599 2019-09-19 756631 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530517/756631.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530517/756631.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530517 756631 ERR3530518 665062 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530518 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530518 635b97f210fd5f30795494c3b0cc8098;8ffa81b5a4eb096f91c73335c394a4d2 1313 170825731 161abc39d086111275bf8f86b93ce0a3;512dbec438fea6434eccf50fbc4742c9 SAMEA5786072 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530518/ERR3530518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530518/ERR3530518_2.fastq.gz 1842855 WGS 665062 RANDOM 123127857;125520197 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c24b0b08520b45456bc01cf59c198ecd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530518/ERR3530518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530518/ERR3530518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530518/665062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530518/665062.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530518/ERR3530518_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530518/ERR3530518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530518/665062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530518/665062.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118180026;120555814 ERS3756214 ERX3549191 GENOMIC 365572008 2019-09-19 665062 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530518/665062.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530518/665062.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530518 665062 ERR3530519 756639 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530519 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530519 089ac8ce6d867e41c3df320dfe1e7f54;5bd8cf4fa55a1132a5a2c37c069567f9 1313 126990430 833659acdb43c26bd979abc100c2d2fb;b98e6c7a25bc5b43dd66b0ac5cb7447a SAMEA5785639 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530519/ERR3530519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530519/ERR3530519_2.fastq.gz 1366609 WGS 756639 RANDOM 92235844;93667977 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ba4178869f504e70ffbc3c90e5bc534b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530519/ERR3530519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530519/ERR3530519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530519/756639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530519/756639.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530519/ERR3530519_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530519/ERR3530519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530519/756639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530519/756639.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88817298;90213416 ERS3755782 ERX3548759 GENOMIC 272602808 2019-09-19 756639 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530519/756639.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530519/756639.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530519 756639 ERR3530520 717832 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530520 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530520 f56d320a9c3ef4263f77f014e60b7519;ea375c968977be94b8afceb70d99edf6 1313 137691470 efeef4c2bb9c6b85320efe9b031cbc99;c2cc46c37d23e8115625345bb14caea5 SAMEA5786051 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530520/ERR3530520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530520/ERR3530520_2.fastq.gz 1638064 WGS 717832 RANDOM 101278844;103875208 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 40b79659d0da36e7b066d6380496d6f4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530520/ERR3530520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530520/ERR3530520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530520/717832.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530520/717832.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530520/ERR3530520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530520/ERR3530520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530520/717832.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530520/717832.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 96912480;99501163 ERS3756193 ERX3549170 GENOMIC 323056885 2019-09-19 717832 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530520/717832.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530520/717832.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530520 717832 ERR3530521 753432 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530521 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530521 7326aea263e60349b665ab20bb3162e4;e0e52ec69f76a48eeb4cbe130551ad28 1313 134819945 7cf2bf1d437a084c89f5fa1555c255ec;8911a5755219e527b01b18d60a3d77bc SAMEA5785758 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530521/ERR3530521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530521/ERR3530521_2.fastq.gz 1450802 WGS 753432 RANDOM 94394114;101536303 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 27d09243424bdcb098dab54fd1e991fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530521/ERR3530521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530521/ERR3530521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530521/753432.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530521/753432.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530521/ERR3530521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530521/ERR3530521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530521/753432.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530521/753432.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90677327;97781569 ERS3755901 ERX3548878 GENOMIC 287935910 2019-09-19 753432 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530521/753432.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530521/753432.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530521 753432 ERR3530587 753441 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530587 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530587 bc9b50cf9d4226db1793b11fc8f8d42d;7b4ed9ba8bbaef3d6a477d8ce6a20a9a 1313 93323131 386fa520fb426b19cce668eb5075c586;e03f72ad0eb8f84729947f5ddfbeae4f SAMEA5785749 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530587/ERR3530587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530587/ERR3530587_2.fastq.gz 1038497 WGS 753441 RANDOM 68824144;68563662 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dbc6cdb081d08ece832ceaf359f3badd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530587/ERR3530587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530587/ERR3530587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530587/753441.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530587/753441.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530587/ERR3530587_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530587/ERR3530587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530587/753441.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530587/753441.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66173704;65921676 ERS3755892 ERX3548869 GENOMIC 206244614 2019-09-19 753441 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530587/753441.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530587/753441.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530587 753441 ERR3530524 720941 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530524 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530524 67767f67f855db931ef30477b46c6180;7784d6bbdc43d850d3e7c29e151ea75d 1313 295446152 554c45196810ab9719a09a68544d90fe;32876559b121a3cb68c87e6b76c9a217 SAMEA5785867 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530524/ERR3530524_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530524/ERR3530524_2.fastq.gz 3047509 WGS 720941 RANDOM 210427433;214983655 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b7976769c433c5cd74151bcad5436387 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530524/ERR3530524_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530524/ERR3530524_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530524/720941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530524/720941.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530524/ERR3530524_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530524/ERR3530524_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530524/720941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530524/720941.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 202246652;206717522 ERS3756010 ERX3548987 GENOMIC 604411434 2019-09-19 720941 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530524/720941.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530524/720941.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530524 720941 ERR3530523 756641 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530523 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530523 26f27d506cc498bdbaf97c6bfc12c1b5;d37ea20307d64df89c9ee9e79392d5a3 1313 137041017 c931747aa7e7d330a81bb4d0b3e507b8;0eb6c8cbfa8cfaa9fb73ce62164a4922 SAMEA5785637 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530523/ERR3530523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530523/ERR3530523_2.fastq.gz 1473779 WGS 756641 RANDOM 99708586;100981969 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 33108f1f9e4f321f1321ab46ad256e76 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530523/ERR3530523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530523/ERR3530523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530523/756641.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530523/756641.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530523/ERR3530523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530523/ERR3530523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530523/756641.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530523/756641.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 95968377;97204958 ERS3755780 ERX3548757 GENOMIC 293714735 2019-09-19 756641 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530523/756641.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530523/756641.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530523 756641 ERR3530525 757954 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530525 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530525 9fd5fb348a5d061505af21a412f2c619;7fc023e186b7e5fb9d31fff128146c32 1313 102083486 3f4f79b0651f9e6505ec300c8b6e1f52;57ccc2f34ec6dd4a195f3352fa761476 SAMEA5785576 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530525/ERR3530525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530525/ERR3530525_2.fastq.gz 1206820 WGS 757954 RANDOM 73354320;78661913 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7b7f9e94fe03f73b8905927f4e6b7e7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530525/ERR3530525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530525/ERR3530525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530525/757954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530525/757954.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530525/ERR3530525_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530525/ERR3530525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530525/757954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530525/757954.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70299154;75604543 ERS3755719 ERX3548696 GENOMIC 239891196 2019-09-19 757954 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530525/757954.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530525/757954.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530525 757954 ERR3530526 651026 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530526 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530526 0cf59d1e5083fc808773fde936a7af91;ae083b3938aacfb618beea3ced6d50d6 1313 128445361 52073ceb1673ea6f9bcfae3d7c7453ad;215c6b1ba11f8a48b46173a79d52593f SAMEA5786121 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530526/ERR3530526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530526/ERR3530526_2.fastq.gz 1409062 WGS 651026 RANDOM 93588311;95398113 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 027804df453e0e36fca1592df1afc6a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530526/ERR3530526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530526/ERR3530526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530526/651026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530526/651026.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530526/ERR3530526_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530526/ERR3530526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530526/651026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530526/651026.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90057717;91842746 ERS3756263 ERX3549240 GENOMIC 281554400 2019-09-19 651026 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530526/651026.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530526/651026.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530526 651026 ERR3530527 720940 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530527 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530527 50f92405ad87145c46faba0b11a881d4;feaafad845653769f11ddfd6575c61e0 1313 333755824 5e08187e682962ccdd5ecee347871e48;fd05339fa59d57b6f561fdf0ad0a2026 SAMEA5785868 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530527/ERR3530527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530527/ERR3530527_2.fastq.gz 3446310 WGS 720940 RANDOM 237683400;243591017 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b41f8e4dcbcb01e2e8a22d0df6ae8ec7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530527/ERR3530527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530527/ERR3530527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530527/720940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530527/720940.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530527/ERR3530527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530527/ERR3530527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530527/720940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530527/720940.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 228038639;233872636 ERS3756011 ERX3548988 GENOMIC 683579109 2019-09-19 720940 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530527/720940.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530527/720940.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530527 720940 ERR3530611 758022 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530611 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530611 358cbc331394673ec9a3ef94bddb33af;a619491108b0775242f8e499e49d3364 1313 147143779 74a3cf88194f36bc4df1f1ccc2ca4432;37a2c940335b14d242314306207a7392 SAMEA5785509 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530611/ERR3530611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530611/ERR3530611_2.fastq.gz 1770392 WGS 758022 RANDOM 107604332;112529812 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. de249c2b48c0134592145be7914d765f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530611/ERR3530611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530611/ERR3530611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530611/758022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530611/758022.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530611/ERR3530611_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530611/ERR3530611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530611/758022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530611/758022.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102893314;107817833 ERS3755652 ERX3548629 GENOMIC 352028331 2019-09-19 758022 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530611/758022.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530611/758022.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530611 758022 ERR3530528 756623 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530528 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530528 d45a1338df7f9cbee051c773c7dae569;5311d97f214f3f167379617c5dd9de1e 1313 190729318 2d687bb36cec6a8989ba0ab693e13017;034bea5ec4d17ee90e8c80e979d5b894 SAMEA5785654 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530528/ERR3530528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530528/ERR3530528_2.fastq.gz 2071253 WGS 756623 RANDOM 138690695;140502288 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ca1f1633b0f023ca1d094188bfce9330 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530528/ERR3530528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530528/ERR3530528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530528/756623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530528/756623.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530528/ERR3530528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530528/ERR3530528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530528/756623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530528/756623.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 133312462;135091625 ERS3755797 ERX3548774 GENOMIC 412242086 2019-09-19 756623 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530528/756623.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530528/756623.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530528 756623 ERR3530530 721011 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530530 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530530 cc1e212a473b35f10ccf23941c217ea4;9012cec4a3586040441c3a9d283bb7f3 1313 124104114 7ca746d07aaf930dbfa36c8a4d9f0181;50b9b8176919f439433d33fa6e870951 SAMEA5785798 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530530/ERR3530530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530530/ERR3530530_2.fastq.gz 1311365 WGS 721011 RANDOM 89883616;90544272 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0d959f66ff0aeefd083683915bf49e3c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530530/ERR3530530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530530/ERR3530530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530530/721011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530530/721011.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530530/ERR3530530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530530/ERR3530530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530530/721011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530530/721011.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86558400;87209585 ERS3755941 ERX3548918 GENOMIC 259220019 2019-09-19 721011 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530530/721011.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530530/721011.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530530 721011 ERR3530531 717975 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530531 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530531 9d4a64e5541b2275a2c0504e85de0d91;aad2b98ea68a5c0479852281ef454892 1313 125859509 c716b46a9f3d2be25921644119e6dd16;e178e31494e1288ef60be58d313a8daa SAMEA5785966 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530531/ERR3530531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530531/ERR3530531_2.fastq.gz 1455176 WGS 717975 RANDOM 91984406;94692242 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 434640303d13a48750968ed8a3bf059f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530531/ERR3530531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530531/ERR3530531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530531/717975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530531/717975.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530531/ERR3530531_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530531/ERR3530531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530531/717975.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530531/717975.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88191470;90889238 ERS3756108 ERX3549085 GENOMIC 289256671 2019-09-19 717975 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530531/717975.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530531/717975.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530531 717975 ERR3530532 304297 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530532 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530532 988ae5bd2de688c80c1e13ab75ff22e3;58094ee672379804e0616495788ffce1 1313 184086271 f82465c15f6db30d96616b2dc0016043;943f2813d63625982b6d14e19e02741a SAMEA5786231 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530532/ERR3530532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530532/ERR3530532_2.fastq.gz 2148883 WGS 304297 RANDOM 135127998;137277781 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 20b3aded1ecbaba97f4d1654abc68b83 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530532/ERR3530532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530532/ERR3530532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530532/304297.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530532/304297.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530532/ERR3530532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530532/ERR3530532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530532/304297.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530532/304297.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129494663;131632505 ERS3756373 ERX3549350 GENOMIC 425903186 2019-09-19 304297 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530532/304297.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530532/304297.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530532 304297 ERR3530534 308627 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530534 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530534 366d6ef9b7adf0292334043efa116e57;12c825f1c8c80090c4ed22130e57a557 1313 185566039 7949788efe0d6e22a7b085a559a4a656;73b02c3c64677ba751cf3f7628b53728 SAMEA5786167 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530534/ERR3530534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530534/ERR3530534_2.fastq.gz 2042057 WGS 308627 RANDOM 134600519;137343510 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9d0b835be70e0819d0e5285f42b87314 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530534/ERR3530534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530534/ERR3530534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530534/308627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530534/308627.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530534/ERR3530534_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530534/ERR3530534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530534/308627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530534/308627.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129212261;131942815 ERS3756309 ERX3549286 GENOMIC 404540089 2019-09-19 308627 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530534/308627.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530534/308627.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530534 308627 ERR3530632 755702 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530632 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530632 be3c3d62482f2214657fb9ccfca67e78;1a745f1a570ecef27abfd8c9330c833c 1313 106638192 34375321fef2e70656d5e5dcd61db047;96cbe0b3c12c9f8d8dfc139329306071 SAMEA5785689 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530632/ERR3530632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530632/ERR3530632_2.fastq.gz 1219893 WGS 755702 RANDOM 77214491;80413901 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 25dd209766809d01f3e6d761d6c7c3f9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530632/ERR3530632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530632/ERR3530632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530632/755702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530632/755702.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530632/ERR3530632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530632/ERR3530632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530632/755702.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530632/755702.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74125149;77319138 ERS3755832 ERX3548809 GENOMIC 242927134 2019-09-19 755702 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530632/755702.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530632/755702.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530632 755702 ERR3530634 753478 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530634 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530634 0301915cf32093363b953a853a990fa5;4a3440d1ff29866e12a946046f6bafae 1313 135278059 7f561eab26fef1ec35e13d768ccd1c2e;39e44f41b773338ebfe7f6a7e836f51c SAMEA5785714 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530634/ERR3530634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530634/ERR3530634_2.fastq.gz 1475328 WGS 753478 RANDOM 96894090;100745245 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5263254476a1efb58dceee26fbc10c5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530634/ERR3530634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530634/ERR3530634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530634/753478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530634/753478.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530634/ERR3530634_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530634/ERR3530634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530634/753478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530634/753478.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93079203;96919399 ERS3755857 ERX3548834 GENOMIC 292594882 2019-09-19 753478 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530634/753478.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530634/753478.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530634 753478 ERR3530539 651030 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530539 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530539 8ab3926e47b91899505f5a53f9506674;744640038eef6dff2201c1dcb3ec0a97 1313 164359754 31ce301b967027187391dddd76232b00;703422d41b5c3b2a4b98a4b8a61b8f9b SAMEA5786117 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530539/ERR3530539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530539/ERR3530539_2.fastq.gz 1834059 WGS 651030 RANDOM 119916381;122694570 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5ad300c8c7c1d879e4e4025d70d49325 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530539/ERR3530539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530539/ERR3530539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530539/651030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530539/651030.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530539/ERR3530539_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530539/ERR3530539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530539/651030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530539/651030.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 115082274;117850248 ERS3756259 ERX3549236 GENOMIC 365634734 2019-09-19 651030 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530539/651030.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530539/651030.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530539 651030 ERR3530537 731070 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530537 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530537 efeaabf620113f6901c534e76bf9fa43;d6ce066678f9c8750ad400af6f1341dd 1313 147594285 a6cfdb9abc0e3b6da94098bc683122ab;bc2f44a58582e5636a10545045b804a0 SAMEA5785782 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530537/ERR3530537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530537/ERR3530537_2.fastq.gz 1563474 WGS 731070 RANDOM 105695088;109220414 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3578f0f1b3643a9bff55f2b640f9fe4d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530537/ERR3530537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530537/ERR3530537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530537/731070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530537/731070.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530537/ERR3530537_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530537/ERR3530537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530537/731070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530537/731070.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101676621;105141434 ERS3755925 ERX3548902 GENOMIC 311810722 2019-09-19 731070 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530537/731070.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530537/731070.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530537 731070 ERR3530536 721007 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530536 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530536 17053f5da0a2842ae56e99572a0a350a;ce04032883e6ef45fca40b8b5d27edd5 1313 198604299 807bd372b37000606699a7ebf7a6ab2f;eb43f9fc877114ffa72f016468d43f85 SAMEA5785802 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530536/ERR3530536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530536/ERR3530536_2.fastq.gz 2067261 WGS 721007 RANDOM 142208843;144878049 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 26db9549d5ca1d46c672267c069792bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530536/ERR3530536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530536/ERR3530536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530536/721007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530536/721007.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530536/ERR3530536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530536/ERR3530536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530536/721007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530536/721007.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136802301;139430521 ERS3755945 ERX3548922 GENOMIC 409013878 2019-09-19 721007 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530536/721007.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530536/721007.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530536 721007 ERR3530540 720956 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530540 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530540 3be5776b312d9a63b2f8bd4daa8a7ecc;321d976346eff039490db545b01e6b9a 1313 174685213 deb35da5c01a9418066d9e6617dc1b42;8bccfefa394d27286dc70366d8f955cd SAMEA5785852 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530540/ERR3530540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530540/ERR3530540_2.fastq.gz 1804373 WGS 720956 RANDOM 125664010;126937435 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bee7d817b2ff6fe24d057587cd88bc26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530540/ERR3530540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530540/ERR3530540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530540/720956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530540/720956.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530540/ERR3530540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530540/ERR3530540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530540/720956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530540/720956.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120882628;122121065 ERS3755995 ERX3548972 GENOMIC 357900308 2019-09-19 720956 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530540/720956.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530540/720956.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530540 720956 ERR3530538 758019 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530538 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530538 b53be05650f0e4afb9b87c8b55a6542d;5d682356fc7d686a957fdd122adbae5b 1313 78119765 a84a3ad6ec9dab86780d822b0610df5a;7e416edcafd47ca01d1112ce0bab19ca SAMEA5785512 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530538/ERR3530538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530538/ERR3530538_2.fastq.gz 933756 WGS 758019 RANDOM 57117657;59343255 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a32f0391cfc28aac80ab6fe65dab8dc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530538/ERR3530538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530538/ERR3530538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530538/758019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530538/758019.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530538/ERR3530538_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530538/ERR3530538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530538/758019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530538/758019.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 54725476;56944075 ERS3755655 ERX3548632 GENOMIC 183185344 2019-09-19 758019 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530538/758019.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530538/758019.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530538 758019 ERR3530541 756651 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530541 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530541 ae5c9f3a1531ce2a75928cb1f1f65da9;e379155b99f8023200c7c97d7e5177f2 1313 132056115 3b329d7defc98e739f2297fed8e42e31;1d145c0df886329dfb366018695561ac SAMEA5785627 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530541/ERR3530541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530541/ERR3530541_2.fastq.gz 1429575 WGS 756651 RANDOM 95569463;97944844 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 96cb6e9dd4c61812d6254b6f00f44a65 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530541/ERR3530541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530541/ERR3530541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530541/756651.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530541/756651.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530541/ERR3530541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530541/ERR3530541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530541/756651.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530541/756651.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91924158;94262737 ERS3755770 ERX3548747 GENOMIC 284392994 2019-09-19 756651 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530541/756651.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530541/756651.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530541 756651 ERR3530542 731067 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530542 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530542 f3a6db78543b95c9de87c2a753513ad7;ec02c88f85627fabc719fe4b124c1b79 1313 277433980 c8d0aa6bc8239befd3b17ddbe588d7da;935d7f996359f09f1a696acc25ec384f SAMEA5785784 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530542/ERR3530542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530542/ERR3530542_2.fastq.gz 2973592 WGS 731067 RANDOM 200461581;204779119 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9783fd904f47f34d08bd64517c6efa7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530542/ERR3530542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530542/ERR3530542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530542/731067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530542/731067.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530542/ERR3530542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530542/ERR3530542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530542/731067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530542/731067.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 192725079;196995388 ERS3755927 ERX3548904 GENOMIC 593046357 2019-09-19 731067 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530542/731067.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530542/731067.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530542 731067 ERR3530543 759517 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530543 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530543 6dca2f104187d5003ce5db27c63231f1;fd9c3779af94abb510e64042b05cb732 1313 159572774 2c4bca23c9b892d41edf624d7547c879;7078e4042fc60eaa723964cb5c1ad468 SAMEA5785490 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530543/ERR3530543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530543/ERR3530543_2.fastq.gz 1881113 WGS 759517 RANDOM 117143943;120275650 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c0a393327cd5dd74d93f0d44fb644ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530543/ERR3530543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530543/ERR3530543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530543/759517.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530543/759517.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530543/ERR3530543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530543/ERR3530543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530543/759517.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530543/759517.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112117002;115239121 ERS3755633 ERX3548610 GENOMIC 373443650 2019-09-19 759517 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530543/759517.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530543/759517.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530543 759517 ERR3530545 318630 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530545 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530545 16fd9c7b6b20418d85d4c93ac2c5cb8f;5636a2990d25fc1bca713a81314d41a3 1313 160578680 79a1b094dcf42b949fbab41276ba89fe;6dc1e8515024b931b27af7ef6322a97b SAMEA5786129 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530545/ERR3530545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530545/ERR3530545_2.fastq.gz 1704696 WGS 318630 RANDOM 115231193;116666674 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 60ee7ae6902fc38428f7e881486446aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530545/ERR3530545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530545/ERR3530545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530545/318630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530545/318630.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530545/ERR3530545_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530545/ERR3530545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530545/318630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530545/318630.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110683626;112107378 ERS3756271 ERX3549248 GENOMIC 328449310 2019-09-19 318630 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530545/318630.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530545/318630.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530545 318630 ERR3530544 720217 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530544 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530544 5a3b1a20f3acf3e6294cf7b0606bc441;783561f7978ca1e29b2257406dec426b 1313 236015687 d95d74ec6cf1238033b9ca75365cf9d8;865198b0375f84eecb596fbe29895b65 SAMEA5785917 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530544/ERR3530544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530544/ERR3530544_2.fastq.gz 2619018 WGS 720217 RANDOM 170783818;174047982 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c77465a071c90ab691aa57c73ec40295 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530544/ERR3530544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530544/ERR3530544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530544/720217.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530544/720217.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530544/ERR3530544_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530544/ERR3530544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530544/720217.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530544/720217.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 164007346;167251133 ERS3756060 ERX3549037 GENOMIC 519774748 2019-09-19 720217 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530544/720217.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530544/720217.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530544 720217 ERR3530546 300855 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530546 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530546 9c261fe40ec51cb005c8b7fab669590a;dcf9a1168930a3e0b693ca36e4a0f764 1313 129350141 38262ff0e499673fea42c22d030f57fc;257f2394956f22ce1529a1d52d785d1d SAMEA5786285 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530546/ERR3530546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530546/ERR3530546_2.fastq.gz 1527735 WGS 300855 RANDOM 93697772;95502622 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 15639faa0ac00ed1e678d5005c83282a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530546/ERR3530546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530546/ERR3530546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530546/300855.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530546/300855.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530546/ERR3530546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530546/ERR3530546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530546/300855.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530546/300855.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89924061;91696938 ERS3756427 ERX3549404 GENOMIC 302862675 2019-09-19 300855 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530546/300855.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530546/300855.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530546 300855 ERR3530547 720254 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530547 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530547 780723eae620774890f640642a94d77f;437abac1f6f0b0a970cf78938d6881bf 1313 201038983 baf1a2b252e438df1dd5eea9cd1c887e;09ca14d2bce8f7bb8b663f5828ab6661 SAMEA5785880 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530547/ERR3530547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530547/ERR3530547_2.fastq.gz 2232166 WGS 720254 RANDOM 146279266;148419894 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d02200c63d7d10472172248706f29f34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530547/ERR3530547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530547/ERR3530547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530547/720254.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530547/720254.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530547/ERR3530547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530547/ERR3530547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530547/720254.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530547/720254.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140462809;142592057 ERS3756023 ERX3549000 GENOMIC 442927673 2019-09-19 720254 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530547/720254.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530547/720254.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530547 720254 ERR3530548 757961 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530548 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530548 e06ebea8793e626c2d1bf3b8c62754df;73d765b5c3d64f17e93fa54e28bd476b 1313 114357443 b24bd3d0d0f9cdf4adf891a9f037ba6f;10e2af9846330928b43e908da4ca3482 SAMEA5785569 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530548/ERR3530548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530548/ERR3530548_2.fastq.gz 1391652 WGS 757961 RANDOM 84621537;86809240 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6535225fef36afa11e8f07ef9cdd9fc6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530548/ERR3530548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530548/ERR3530548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530548/757961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530548/757961.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530548/ERR3530548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530548/ERR3530548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530548/757961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530548/757961.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81047307;83222224 ERS3755712 ERX3548689 GENOMIC 276357863 2019-09-19 757961 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530548/757961.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530548/757961.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530548 757961 ERR3530550 720273 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530550 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530550 23ee36adeaff2b6780263450aa50337a;1507e515b19827eeb6d25e22c1746899 1313 127282047 96648728c4861af3c3481d6d4964b704;e32fc799f2be4dd64540502ea0c171d6 SAMEA5785869 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530550/ERR3530550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530550/ERR3530550_2.fastq.gz 1420149 WGS 720273 RANDOM 91866445;94667070 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 39f30208c09b1b516a6d97cd3210a3ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530550/ERR3530550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530550/ERR3530550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530550/720273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530550/720273.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530550/ERR3530550_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530550/ERR3530550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530550/720273.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530550/720273.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88211376;91002261 ERS3756012 ERX3548989 GENOMIC 280103925 2019-09-19 720273 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530550/720273.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530550/720273.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530550 720273 ERR3530549 756602 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530549 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530549 398206e38ed6377854204fdb3fd59ae9;d40acb264134b6282652d3a3e2a88b11 1313 121844490 4a52920f9444a094803bf4a7cbd1ca26;96cb14a140ee18105383360cca74a8b0 SAMEA5785675 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530549/ERR3530549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530549/ERR3530549_2.fastq.gz 1307457 WGS 756602 RANDOM 87530514;90500371 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ae9017a668c69fc41aba3a795f692909 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530549/ERR3530549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530549/ERR3530549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530549/756602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530549/756602.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530549/ERR3530549_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530549/ERR3530549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530549/756602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530549/756602.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84242132;87176027 ERS3755818 ERX3548795 GENOMIC 259895917 2019-09-19 756602 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530549/756602.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530549/756602.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530549 756602 ERR3530551 717928 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530551 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530551 20d2821f10b2fb56ba9fe80e266d419a;7b17eec63344236be6594ea9205b4b31 1313 102008059 bd59fee20e528b67e8d0ebe69b7bbba9;0d78ae68334ee63546ed8eca8b159bdb SAMEA5786009 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530551/ERR3530551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530551/ERR3530551_2.fastq.gz 1188566 WGS 717928 RANDOM 74209506;77421447 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1dcd44c07e502945b7705cd96fdeb2b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530551/ERR3530551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530551/ERR3530551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530551/717928.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530551/717928.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530551/ERR3530551_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530551/ERR3530551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530551/717928.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530551/717928.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71183330;74380941 ERS3756151 ERX3549128 GENOMIC 236789268 2019-09-19 717928 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530551/717928.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530551/717928.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530551 717928 ERR3530552 757997 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530552 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530552 a8a658f1a42e9274954d0b9c67c0291e;0d20deabd001b022bfd5d3c6c82e78ee 1313 149322641 dbb4f4c10227d7c98f62f6f684a35104;db85303e9098b30ab56719860cfc7c7d SAMEA5785533 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530552/ERR3530552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530552/ERR3530552_2.fastq.gz 1812472 WGS 757997 RANDOM 110124883;113778746 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 019e2203f1eebebc4e777e9e29b5ae21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530552/ERR3530552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530552/ERR3530552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530552/757997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530552/757997.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530552/ERR3530552_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530552/ERR3530552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530552/757997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530552/757997.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105269162;108931998 ERS3755676 ERX3548653 GENOMIC 360137076 2019-09-19 757997 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530552/757997.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530552/757997.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530552 757997 ERR3530553 720188 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530553 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530553 cb14045b6f683338c364c00737eabeb8;ccc2d567468ec0b5c68b76863ac9caea 1313 151256328 dc5912cedd0aa8e3d5747081fc3c5188;19b8f0006220148ef359d4a0e4b9741d SAMEA5785947 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530553/ERR3530553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530553/ERR3530553_2.fastq.gz 1703196 WGS 720188 RANDOM 110870664;111896724 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 347e73ce2c23f3f9ceecc2b555c6d75b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530553/ERR3530553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530553/ERR3530553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530553/720188.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530553/720188.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530553/ERR3530553_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530553/ERR3530553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530553/720188.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530553/720188.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106322505;107334731 ERS3756089 ERX3549066 GENOMIC 336441303 2019-09-19 720188 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530553/720188.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530553/720188.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530553 720188 ERR3530554 720980 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530554 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530554 ab774500585148d15421edfed3a1de3b;e0f56a72b4ffadbc59fe69d6d07c6992 1313 324282200 9b8a3d398e5ff5dbb85bd2ed0a58839e;23438b1419451523a2f48b09659cbfad SAMEA5785828 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530554/ERR3530554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530554/ERR3530554_2.fastq.gz 3402768 WGS 720980 RANDOM 234181347;236223482 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 94d551f6ad85b99ee61849bf1c51202f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530554/ERR3530554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530554/ERR3530554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530554/720980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530554/720980.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530554/ERR3530554_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530554/ERR3530554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530554/720980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530554/720980.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 224725444;226744717 ERS3755971 ERX3548948 GENOMIC 674184622 2019-09-19 720980 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530554/720980.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530554/720980.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530554 720980 ERR3530639 720207 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530639 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530639 0a4d4e0777ce75825d79e8c5923fbe5e;0f7c6d888557115fe3f0eb8151c55bcb 1313 213899824 8869a38c52f1a0a6fddb40e43e8f0378;d76f3c06864e9feec62be3199d43d90d SAMEA5785928 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530639/ERR3530639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530639/ERR3530639_2.fastq.gz 2381810 WGS 720207 RANDOM 154131785;158929675 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dea56ac5075e4d12b8a9a9f060821554 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530639/ERR3530639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530639/ERR3530639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530639/720207.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530639/720207.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530639/ERR3530639_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530639/ERR3530639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530639/720207.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530639/720207.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 147943277;152731868 ERS3756070 ERX3549047 GENOMIC 471855160 2019-09-19 720207 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530639/720207.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530639/720207.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530639 720207 ERR3530556 721014 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530556 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530556 5797c4a114ea2e91c62d16be85293117;62353a702170b31384663d1f99953604 1313 262210986 fad0a432e4d8f91dfa3cc87110b88b00;511aeb6f4cca225c6445c048ee413f12 SAMEA5785795 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530556/ERR3530556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530556/ERR3530556_2.fastq.gz 2755986 WGS 721014 RANDOM 188516564;190622969 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0f34c4c67b2d180b2a835ac772566127 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530556/ERR3530556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530556/ERR3530556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530556/721014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530556/721014.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530556/ERR3530556_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530556/ERR3530556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530556/721014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530556/721014.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 181355277;183437631 ERS3755938 ERX3548915 GENOMIC 545815627 2019-09-19 721014 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530556/721014.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530556/721014.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530556 721014 ERR3530557 304272 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530557 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530557 983fc2eb60a702d4aa9defd39193248e;916656c14b0c5f41fca4a8ada8374006 1313 190419549 dd2179c7f4965e98a1b176383b92907f;af524225c78d52d4550fc497bbe99dc1 SAMEA5786252 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530557/ERR3530557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530557/ERR3530557_2.fastq.gz 2182955 WGS 304272 RANDOM 138629801;141822594 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 64df244039a84dc7a256377e40af33e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530557/ERR3530557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530557/ERR3530557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530557/304272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530557/304272.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530557/ERR3530557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530557/ERR3530557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530557/304272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530557/304272.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 132964593;136143525 ERS3756394 ERX3549371 GENOMIC 433432310 2019-09-19 304272 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530557/304272.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530557/304272.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530557 304272 ERR3530560 720226 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530560 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530560 eff410f850cce8cf2bae2f7e7486f1fb;3595836792aa8d397a212b98b7ad3c77 1313 296286273 003420986ccdfbfebacdaf3339681870;e1c8726f34c2376ae426af355bfcd943 SAMEA5785908 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530560/ERR3530560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530560/ERR3530560_2.fastq.gz 3368700 WGS 720226 RANDOM 218114748;218255243 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 832d90c7ad48cf033d15c91373418f47 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530560/ERR3530560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530560/ERR3530560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530560/720226.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530560/720226.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530560/ERR3530560_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530560/ERR3530560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530560/720226.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530560/720226.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 208656041;208801704 ERS3756051 ERX3549028 GENOMIC 662003392 2019-09-19 720226 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530560/720226.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530560/720226.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530560 720226 ERR3530559 652824 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530559 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530559 c44c64f9c91565e13d831ed3625aef5f;e3c49cafe6957be099db23cc2361b5c8 1313 141767203 44956069dbe085c3a0683a109b5450ac;8e38198a042205aa11384e0fc1f96c4d SAMEA5786099 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530559/ERR3530559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530559/ERR3530559_2.fastq.gz 1572586 WGS 652824 RANDOM 103315964;105620530 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 496199f2133be77c07e00e8581fd85d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530559/ERR3530559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530559/ERR3530559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530559/652824.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530559/652824.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530559/ERR3530559_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530559/ERR3530559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530559/652824.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530559/652824.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99246574;101534940 ERS3756241 ERX3549218 GENOMIC 314143714 2019-09-19 652824 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530559/652824.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530559/652824.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530559 652824 ERR3530641 760590 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530641 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530641 5fdf0f4823abcce3b30d85e262cd2061;545ff416b19411f2071f29bb4ffb98ff 1313 121414207 601e34d8851942e8a020bbb4ea7f2322;a5394d87b63123ddc2e44b03e33ab863 SAMEA5785447 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530641/ERR3530641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530641/ERR3530641_2.fastq.gz 1301749 WGS 760590 RANDOM 87052908;90484412 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6b94d7d0b681ec7c62ff4f03db54c04f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530641/ERR3530641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530641/ERR3530641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530641/760590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530641/760590.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530641/ERR3530641_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530641/ERR3530641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530641/760590.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530641/760590.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83806956;87194611 ERS3755590 ERX3548567 GENOMIC 259631514 2019-09-19 760590 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530641/760590.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530641/760590.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530641 760590 ERR3530562 720951 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530562 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530562 eb79b29c4be365c1be9be032b389601f;2fc43c989b13e02010322c34f53d297a 1313 248417844 f367d6dd40e6fdfbca6b9b6c630bf673;ef61e4aed342f2f5f696c9925069eee5 SAMEA5785857 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530562/ERR3530562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530562/ERR3530562_2.fastq.gz 2577104 WGS 720951 RANDOM 178051249;180134170 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 68cfbb3ad313b252a511d555453f0f1d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530562/ERR3530562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530562/ERR3530562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530562/720951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530562/720951.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530562/ERR3530562_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530562/ERR3530562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530562/720951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530562/720951.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 171469581;173521469 ERS3756000 ERX3548977 GENOMIC 511748067 2019-09-19 720951 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530562/720951.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530562/720951.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530562 720951 ERR3530561 720198 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530561 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530561 113880d73c125e44abf03db6ad146a12;7e18b783e6cb1fdd049ecb90de17fa1f 1313 101373593 6f14033ac90669d1e469e8571bf78ba1;20db1e704ec89f9172947d38c9797b85 SAMEA5785937 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530561/ERR3530561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530561/ERR3530561_2.fastq.gz 1107016 WGS 720198 RANDOM 73047863;75309352 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3a19f99b38defdc4719d55c76787c393 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530561/ERR3530561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530561/ERR3530561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530561/720198.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530561/720198.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530561/ERR3530561_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530561/ERR3530561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530561/720198.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530561/720198.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70224120;72477129 ERS3756079 ERX3549056 GENOMIC 219258705 2019-09-19 720198 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530561/720198.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530561/720198.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530561 720198 ERR3530564 308582 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530564 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530564 0ed75a4f219cb4b81f8f541f20cc971b;4524c2371ca2fedfda355a76a5374747 1313 227446483 93e91ceef9b6ab904062e69b0ccd2a9e;e0ac50995bb375aef9d80c29db764004 SAMEA5786206 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530564/ERR3530564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530564/ERR3530564_2.fastq.gz 2529675 WGS 308582 RANDOM 164975912;167767458 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a04fe00cf470053bc211afdbcf244a94 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530564/ERR3530564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530564/ERR3530564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530564/308582.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530564/308582.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530564/ERR3530564_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530564/ERR3530564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530564/308582.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530564/308582.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 158464439;161257436 ERS3756348 ERX3549325 GENOMIC 496642087 2019-09-19 308582 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530564/308582.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530564/308582.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530564 308582 ERR3530563 717940 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530563 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530563 5c4a9adb955d66fc22ac35607b29475b;1936c9c0fe6c3c6e1315f3f691aedbe9 1313 175562501 8030de1663d5afd03fd5bbc03a83881f;6e976b96fcee9497d0999c7ca41eebd9 SAMEA5786000 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530563/ERR3530563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530563/ERR3530563_2.fastq.gz 2080000 WGS 717940 RANDOM 128623970;132747700 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7359f785fdc19b53284888a2a7678d8d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530563/ERR3530563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530563/ERR3530563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530563/717940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530563/717940.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530563/ERR3530563_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530563/ERR3530563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530563/717940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530563/717940.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123092229;127202989 ERS3756142 ERX3549119 GENOMIC 413958176 2019-09-19 717940 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530563/717940.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530563/717940.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530563 717940 ERR3530565 720195 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530565 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530565 c165db84e0d94748f60bc94d86749533;eceb3896bf2dc2fc13d30f5ae9176c7f 1313 134752972 b4ffc605831c6cc2cf728e94df9ee3bc;1f830e6a786bbcf6128b4e9ccb47b7f4 SAMEA5785940 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530565/ERR3530565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530565/ERR3530565_2.fastq.gz 1538205 WGS 720195 RANDOM 99195615;99333260 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5c6579aad7452c8ff22358efc211b9f4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530565/ERR3530565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530565/ERR3530565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530565/720195.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530565/720195.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530565/ERR3530565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530565/ERR3530565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530565/720195.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530565/720195.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 95159116;95294712 ERS3756082 ERX3549059 GENOMIC 299837151 2019-09-19 720195 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530565/720195.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530565/720195.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530565 720195 ERR3530566 308633 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530566 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530566 46170fbf83cbc2e1484c8481e86b66f0;faaee546b91c39918ea29f1d05e0ce29 1313 234798555 db3f09c5e84deadebd5edc981645fd43;9d2b55ab99d41ea9e601e8d447d9eab1 SAMEA5786161 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530566/ERR3530566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530566/ERR3530566_2.fastq.gz 2589272 WGS 308633 RANDOM 169925420;173682072 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5118acee33746f3b6d7799f22180477a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530566/ERR3530566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530566/ERR3530566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530566/308633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530566/308633.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530566/ERR3530566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530566/ERR3530566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530566/308633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530566/308633.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 163302067;167051083 ERS3756303 ERX3549280 GENOMIC 513135326 2019-09-19 308633 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530566/308633.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530566/308633.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530566 308633 ERR3530567 720241 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530567 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530567 46040162ba77a7ac41da5bae8f3bc623;8b0b093096ee37c5483f5798655bc3ce 1313 212521751 5ed685b550eab83a20aed95412d10604;b43025cb3b5eb0c92140c9a88f21994c SAMEA5785893 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530567/ERR3530567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530567/ERR3530567_2.fastq.gz 2338802 WGS 720241 RANDOM 150810972;159009539 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ae5faa73fe9d0c5f1916f6b34ff63c80 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530567/ERR3530567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530567/ERR3530567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530567/720241.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530567/720241.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530567/ERR3530567_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530567/ERR3530567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530567/720241.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530567/720241.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 144746536;152926134 ERS3756036 ERX3549013 GENOMIC 462600857 2019-09-19 720241 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530567/720241.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530567/720241.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530567 720241 ERR3530569 720239 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530569 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530569 cfe3d88d0bcaaaaede6cf47bc248d43d;f3773323763e6dff32edb6b56349fcf6 1313 150614725 8375f8f013b073df445f99137646c292;9c4690fcf7e3bbe468e1500d3ae92329 SAMEA5785895 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530569/ERR3530569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530569/ERR3530569_2.fastq.gz 1679669 WGS 720239 RANDOM 109143582;111959730 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 514be0605c3cc0692814de38caad07ab ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530569/ERR3530569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530569/ERR3530569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530569/720239.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530569/720239.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530569/ERR3530569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530569/ERR3530569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530569/720239.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530569/720239.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104649790;107453854 ERS3756038 ERX3549015 GENOMIC 330820491 2019-09-19 720239 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530569/720239.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530569/720239.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530569 720239 ERR3530570 756617 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530570 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530570 b41b968cfe4e067aa4d026898bdbd466;46a4a734a54129b58aa1b0a96b08842f 1313 203470914 639ddb9e2e24354bbfbdd88fefa42b23;a13cf7552461a70c26769634908b7fcb SAMEA5785660 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530570/ERR3530570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530570/ERR3530570_2.fastq.gz 2206115 WGS 756617 RANDOM 148258121;149701070 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f06fc20f7535ee2373db7790a4399364 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530570/ERR3530570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530570/ERR3530570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530570/756617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530570/756617.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530570/ERR3530570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530570/ERR3530570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530570/756617.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530570/756617.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 142559467;143980712 ERS3755803 ERX3548780 GENOMIC 440044899 2019-09-19 756617 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530570/756617.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530570/756617.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530570 756617 ERR3530568 720993 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530568 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530568 97eedb8a6553ec5f9e0008c662596ba1;9bd146aded0d6e86a1aa51d9f2601b94 1313 84121544 344b4f1b7b994efe38c6c62aa17af956;07af428f50e92e6a0439b7e25c911b72 SAMEA5785816 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530568/ERR3530568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530568/ERR3530568_2.fastq.gz 886540 WGS 720993 RANDOM 60400788;61045631 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a538538af66e2baf899d0e8b0fd0f1e0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530568/ERR3530568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530568/ERR3530568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530568/720993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530568/720993.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530568/ERR3530568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530568/ERR3530568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530568/720993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530568/720993.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 58180444;58814902 ERS3755959 ERX3548936 GENOMIC 171311434 2019-09-19 720993 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530568/720993.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530568/720993.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530568 720993 ERR3530571 758021 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530571 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530571 9ccd93be53465e2fd8c84d393e5b874c;4d9954af67423bb38a907066b08961f2 1313 170897218 10ba05c089e60ac91031e0b8eda8fe58;a116f66b52799125d96cce574567793a SAMEA5785510 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530571/ERR3530571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530571/ERR3530571_2.fastq.gz 2060731 WGS 758021 RANDOM 125220426;130200078 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 20754580badad744d531d00e3b2925b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530571/ERR3530571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530571/ERR3530571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530571/758021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530571/758021.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530571/ERR3530571_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530571/ERR3530571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530571/758021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530571/758021.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119783587;124758318 ERS3755653 ERX3548630 GENOMIC 409891980 2019-09-19 758021 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530571/758021.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530571/758021.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530571 758021 ERR3530572 308595 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530572 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530572 0c5a0e42b25b0f2b8b5267ff9dfc8faa;260395eaa1068bd54a1f7eacf15d4bb8 1313 112261055 bf0da332191f87948d8ee035b828a38e;083cde6a7aebaf06692b7af8b5a0881b SAMEA5786194 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530572/ERR3530572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530572/ERR3530572_2.fastq.gz 1227186 WGS 308595 RANDOM 81619467;83061081 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8fd0d38211a9be297952c990e4feafd4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530572/ERR3530572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530572/ERR3530572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530572/308595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530572/308595.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530572/ERR3530572_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530572/ERR3530572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530572/308595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530572/308595.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78525317;79954803 ERS3756336 ERX3549313 GENOMIC 243806566 2019-09-19 308595 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530572/308595.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530572/308595.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530572 308595 ERR3530574 720205 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530574 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530574 b27228775e3508a2b413cc191e3b69ef;cb88ce883ccdb76d47e31c9d7f49bee0 1313 225549089 4f0937188420688e70576d2c309fd684;0667aba17048d05730254055f2f29e83 SAMEA5785930 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530574/ERR3530574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530574/ERR3530574_2.fastq.gz 2507348 WGS 720205 RANDOM 164394025;165928192 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 50832fe3ad421ea3af8c2e4de242ccf1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530574/ERR3530574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530574/ERR3530574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530574/720205.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530574/720205.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530574/ERR3530574_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530574/ERR3530574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530574/720205.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530574/720205.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 157935015;159465506 ERS3756072 ERX3549049 GENOMIC 498193680 2019-09-19 720205 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530574/720205.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530574/720205.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530574 720205 ERR3530573 717978 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530573 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530573 83baae58b2a7994fbc47224fe0fed08f;231bbffd3131334895299176baf5d9fc 1313 115434448 68c56b7e1a65cc684e1adc92e4d50f01;99ba4b77aff2d034141777fe29c4ddea SAMEA5785963 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530573/ERR3530573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530573/ERR3530573_2.fastq.gz 1368650 WGS 717978 RANDOM 85609166;86782509 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1c5a52930760c60176931a7db09d4a0b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530573/ERR3530573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530573/ERR3530573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530573/717978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530573/717978.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530573/ERR3530573_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530573/ERR3530573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530573/717978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530573/717978.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82098819;83255739 ERS3756105 ERX3549082 GENOMIC 273259905 2019-09-19 717978 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530573/717978.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530573/717978.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530573 717978 ERR3530575 717830 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530575 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530575 bf1391519790b5074984edcb83ec0832;8459243ba1ffb1cddaac89c036de7570 1313 160173041 157b1f6756442cc0e41908965b629aee;40b8c9fee43aae9051bac4045eeb6f27 SAMEA5786052 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530575/ERR3530575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530575/ERR3530575_2.fastq.gz 1889577 WGS 717830 RANDOM 117470579;121223630 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b052d21afcc3614c28611823e466cff0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530575/ERR3530575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530575/ERR3530575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530575/717830.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530575/717830.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530575/ERR3530575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530575/ERR3530575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530575/717830.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530575/717830.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112416874;116159909 ERS3756194 ERX3549171 GENOMIC 376749984 2019-09-19 717830 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530575/717830.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530575/717830.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530575 717830 ERR3530576 756683 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530576 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530576 89f184e302281cc7c271646d25fdf43c;35ae2b24ef8a4260956317b81e8aab76 1313 136213510 6626175a20d447f427fb0474ade3a5d7;b43d26b146854026ab85d5628a13ee8e SAMEA5785595 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530576/ERR3530576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530576/ERR3530576_2.fastq.gz 1467082 WGS 756683 RANDOM 98025889;101284401 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f37c061b662340517fc6cf414b572dce ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530576/ERR3530576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530576/ERR3530576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530576/756683.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530576/756683.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530576/ERR3530576_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530576/ERR3530576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530576/756683.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530576/756683.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94292364;97489785 ERS3755738 ERX3548715 GENOMIC 291920032 2019-09-19 756683 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530576/756683.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530576/756683.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530576 756683 ERR3530577 308622 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530577 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530577 595ee3c0e25e5a90dceacbb81ae1368a;010c24f952ff3d3bafecb1a68d4293e6 1313 200864718 9a2efa5da827eaf727a9c02ba1e74e9d;8c5cbc43ba02429acedb1be35844cb9a SAMEA5786172 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530577/ERR3530577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530577/ERR3530577_2.fastq.gz 2196099 WGS 308622 RANDOM 145023187;148622099 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8b285c2eec559f35a53001ff09f61d36 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530577/ERR3530577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530577/ERR3530577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530577/308622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530577/308622.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530577/ERR3530577_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530577/ERR3530577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530577/308622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530577/308622.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139299857;142877003 ERS3756314 ERX3549291 GENOMIC 434791957 2019-09-19 308622 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530577/308622.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530577/308622.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530577 308622 ERR3530578 720227 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530578 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530578 518aa2f64a705916c6ab75f598df9c74;49fcef7a3ff57f3fd2d08bd2a5ec430b 1313 110116660 ea31047649ba10f51ea193b60b264292;c2341cb7eb1f8ae5d709f56df74b7512 SAMEA5785907 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530578/ERR3530578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530578/ERR3530578_2.fastq.gz 1237488 WGS 720227 RANDOM 80860290;81385709 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 46488fc0b07dcfc98c772d32813b027e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530578/ERR3530578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530578/ERR3530578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530578/720227.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530578/720227.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530578/ERR3530578_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530578/ERR3530578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530578/720227.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530578/720227.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 77705005;78225906 ERS3756050 ERX3549027 GENOMIC 245668933 2019-09-19 720227 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530578/720227.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530578/720227.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530578 720227 ERR3530579 756679 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530579 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530579 ddadda9947e06529de851031b9c4114f;d5269b7e8925a6d0082a35ca86aa897c 1313 158647582 d47012baa0d8c5ce8fe1f7bbc3af4640;da690ffb7900e3e4aaf98324584ee8cf SAMEA5785599 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530579/ERR3530579_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530579/ERR3530579_2.fastq.gz 1698417 WGS 756679 RANDOM 113845175;117979796 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 890331f4b1c38520f991ea4a70904247 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530579/ERR3530579_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530579/ERR3530579_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530579/756679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530579/756679.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530579/ERR3530579_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530579/ERR3530579_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530579/756679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530579/756679.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109404645;113465162 ERS3755742 ERX3548719 GENOMIC 338408792 2019-09-19 756679 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530579/756679.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530579/756679.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530579 756679 ERR3530580 755704 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530580 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530580 f48f9797b012411ea24d99ebae2b3947;509f046f08b7d91f570a26d229fe4005 1313 204824126 0a8416de83cc3a593544a72709ac8d7a;d2b2e0d809b211425bc822345cabe81d SAMEA5785687 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530580/ERR3530580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530580/ERR3530580_2.fastq.gz 2359812 WGS 755704 RANDOM 146771992;153346884 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 20c2244b07e21270c494cfa30842e893 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530580/ERR3530580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530580/ERR3530580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530580/755704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530580/755704.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530580/ERR3530580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530580/ERR3530580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530580/755704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530580/755704.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140579887;147161063 ERS3755830 ERX3548807 GENOMIC 458005535 2019-09-19 755704 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530580/755704.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530580/755704.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530580 755704 ERR3530581 720234 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530581 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530581 d72acb81b3cf80051168ad0cc26ee554;7d5f3bb184fa26d08a3d7c37461d7d36 1313 117012953 38faa17d8f7e4525f873662bd6988c81;419542eede1346e656ca66e708136247 SAMEA5785900 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530581/ERR3530581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530581/ERR3530581_2.fastq.gz 1280998 WGS 720234 RANDOM 82559173;88236083 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 823d7c8e635742c80c913a2cce92390f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530581/ERR3530581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530581/ERR3530581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530581/720234.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530581/720234.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530581/ERR3530581_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530581/ERR3530581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530581/720234.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530581/720234.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79311484;84960778 ERS3756043 ERX3549020 GENOMIC 254265836 2019-09-19 720234 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530581/720234.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530581/720234.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530581 720234 ERR3530582 757957 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530582 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530582 2806cfb4a5ac742090b7c9e9a20e21a1;92c83562435e1eca82113644b2b523da 1313 57591440 a9885cb9be928ce76d84536abeb97f29;5bc9d6045c2f110c9c6017db036ce4c3 SAMEA5785573 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530582/ERR3530582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530582/ERR3530582_2.fastq.gz 681216 WGS 757957 RANDOM 41304611;44542434 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fe2a21e047d12c9e9b9b9efac3dd0717 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530582/ERR3530582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530582/ERR3530582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530582/757957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530582/757957.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530582/ERR3530582_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530582/ERR3530582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530582/757957.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530582/757957.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 39593679;42830068 ERS3755716 ERX3548693 GENOMIC 134906744 2019-09-19 757957 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530582/757957.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530582/757957.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530582 757957 ERR3530583 289707 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530583 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530583 2ad547d2f331899fe3ef090489831dc2;b692b37a4d23cb865070781a41c40f74 1313 305878656 7b710a28bcba533f068461ec8c1cb506;7dd72d6550be1f2ed4d824c5133ba082 SAMEA5786304 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530583/ERR3530583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530583/ERR3530583_2.fastq.gz 3250008 WGS 289707 RANDOM 213413129;221674866 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5c77064e828616d931f69942fb8304f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530583/ERR3530583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530583/ERR3530583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530583/289707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530583/289707.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530583/ERR3530583_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530583/ERR3530583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530583/289707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530583/289707.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 204872672;213145560 ERS3756446 ERX3549423 GENOMIC 635434549 2019-09-19 289707 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530583/289707.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530583/289707.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530583 289707 ERR3530584 308564 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530584 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530584 042235d84af0f6c3cd3a18eceb0acc7d;e570f68a85795c41021bb4708f23d588 1313 177326172 6d60288c18fdf0247776b3139a299e16;d746b2ff4f7759935809bab46f34c7f7 SAMEA5786223 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530584/ERR3530584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530584/ERR3530584_2.fastq.gz 1959724 WGS 308564 RANDOM 129065462;131157732 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d38e68d052c105a04d6dc291cd57ea7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530584/ERR3530584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530584/ERR3530584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530584/308564.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530584/308564.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530584/ERR3530584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530584/ERR3530584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530584/308564.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530584/308564.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123871303;125950522 ERS3756365 ERX3549342 GENOMIC 387456377 2019-09-19 308564 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530584/308564.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530584/308564.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530584 308564 ERR3530585 757984 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530585 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530585 4682c25bf9fc808bcbe2c1434a804d73;d2e6ec2aec6fab45574071bfd7de37e2 1313 150387936 2d4efa95ba0d86932015238550a2e60e;af2d9e268c65764b13f96675d46e7358 SAMEA5785546 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530585/ERR3530585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530585/ERR3530585_2.fastq.gz 1801102 WGS 757984 RANDOM 110137052;114812659 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 31e2b20447a38ef6c4319d0405595e1d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530585/ERR3530585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530585/ERR3530585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530585/757984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530585/757984.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530585/ERR3530585_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530585/ERR3530585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530585/757984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530585/757984.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105307692;109987454 ERS3755689 ERX3548666 GENOMIC 357982521 2019-09-19 757984 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530585/757984.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530585/757984.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530585 757984 ERR3530590 300873 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530590 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530590 05fdaab824412650a162357f8ec7b0b9;ac3802e3e17afbb12e715a130fbffc80 1313 142707559 4eb3d6b394ff7475b3face89ff94fffb;edfe46f15d93e3ce8405a4e5980b4d97 SAMEA5786269 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530590/ERR3530590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530590/ERR3530590_2.fastq.gz 1680310 WGS 300873 RANDOM 103587800;105137108 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2fd1bec195395eada7396622b5f17576 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530590/ERR3530590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530590/ERR3530590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530590/300873.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530590/300873.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530590/ERR3530590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530590/ERR3530590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530590/300873.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530590/300873.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99340885;100864900 ERS3756411 ERX3549388 GENOMIC 332513810 2019-09-19 300873 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530590/300873.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530590/300873.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530590 300873 ERR3530667 753439 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530667 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530667 8ccce27033cf7bb55f715648043e1a5d;cfc957369e62f8599e426fff8a82e59c 1313 115722645 b2b8020f639f11106153d0201104b7cc;971486a3867fbd85cbb0f6f63b67cbb4 SAMEA5785751 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530667/ERR3530667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530667/ERR3530667_2.fastq.gz 1273830 WGS 753439 RANDOM 84320673;85407056 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dda949282a1b2f8f420c1458ed0439e5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530667/ERR3530667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530667/ERR3530667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530667/753439.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530667/753439.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530667/ERR3530667_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530667/ERR3530667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530667/753439.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530667/753439.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81089894;82176773 ERS3755894 ERX3548871 GENOMIC 254095709 2019-09-19 753439 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530667/753439.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530667/753439.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530667 753439 ERR3530588 756652 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530588 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530588 fc0f3b39481bb0a5ee48c3b78f2eb2da;857d3a92a39e7b2cb652b801f228546f 1313 181555373 5dd86770873e71fd1024487497f65ebe;41335b46a61af3a71f8f6c03ea53cde9 SAMEA5785626 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530588/ERR3530588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530588/ERR3530588_2.fastq.gz 1936251 WGS 756652 RANDOM 130592205;134437408 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 460e9ec63fbb28a9e56d2c63ba7a6037 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530588/ERR3530588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530588/ERR3530588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530588/756652.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530588/756652.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530588/ERR3530588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530588/ERR3530588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530588/756652.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530588/756652.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125470656;129267523 ERS3755769 ERX3548746 GENOMIC 385987363 2019-09-19 756652 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530588/756652.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530588/756652.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530588 756652 ERR3530589 717886 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530589 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530589 27458da4abf702ca022647395cdc7caf;d401bbe103371c59a9b19cd579699957 1313 224766354 a96beae541a84f115d300ad1630f42a6;6788cccf9ea0ac83962f3e41db8e99dc SAMEA5786030 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530589/ERR3530589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530589/ERR3530589_2.fastq.gz 2705026 WGS 717886 RANDOM 166676354;168587614 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 33afbc2b40d9a395c8c9c63ea3650d5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530589/ERR3530589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530589/ERR3530589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530589/717886.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530589/717886.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530589/ERR3530589_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530589/ERR3530589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530589/717886.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530589/717886.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 159618438;161510083 ERS3756172 ERX3549149 GENOMIC 536717018 2019-09-19 717886 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530589/717886.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530589/717886.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530589 717886 ERR3530668 758025 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530668 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530668 e3acdaea63d8085f334d895393ae088a;0fcefead1798df7213aacf25d168dc65 1313 109749066 5b534296e9939af14061723702bd2724;26de468f2aff8787dd87f087a4f85f26 SAMEA5785506 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530668/ERR3530668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530668/ERR3530668_2.fastq.gz 1333637 WGS 758025 RANDOM 80510320;83582743 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ea1f1967c360ccda84f733d1b5b4cfca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530668/ERR3530668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530668/ERR3530668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530668/758025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530668/758025.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530668/ERR3530668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530668/ERR3530668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530668/758025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530668/758025.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 77100057;80161193 ERS3755649 ERX3548626 GENOMIC 263295065 2019-09-19 758025 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530668/758025.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530668/758025.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530668 758025 ERR3530591 670261 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530591 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530591 7c874ef68a2e92cd55ccd11dd66d2c90;626e78cf70112cc703b93d40489d13d8 1313 201157881 cd29729638a6395720f5b4d59db768f9;ae508f2f57a8e3e19daad05a6d09ff6d SAMEA5786061 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530591/ERR3530591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530591/ERR3530591_2.fastq.gz 2388868 WGS 670261 RANDOM 148546307;150708584 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2a7a29663ccbb552d6f4d7714fe82446 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530591/ERR3530591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530591/ERR3530591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530591/670261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530591/670261.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530591/ERR3530591_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530591/ERR3530591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530591/670261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530591/670261.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 142354719;144522180 ERS3756203 ERX3549180 GENOMIC 474679750 2019-09-19 670261 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530591/670261.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530591/670261.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530591 670261 ERR3530594 763049 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530594 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530594 79645ba32dbad4e16c42a2ca98435e43;ad7681eccffa6ef4a39e79fbd57b6a4b 1313 79573524 904dd45e1a334c25650ea83149c4b6c4;d40935e9b0b69dcfd978d04ba4b54c57 SAMEA5785434 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530594/ERR3530594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530594/ERR3530594_2.fastq.gz 856083 WGS 763049 RANDOM 58950597;57595851 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bd9583e36aae2675016226f3a762af9b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530594/ERR3530594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530594/ERR3530594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530594/763049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530594/763049.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530594/ERR3530594_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530594/ERR3530594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530594/763049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530594/763049.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57077614;55727320 ERS3755577 ERX3548554 GENOMIC 170494905 2019-09-19 763049 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530594/763049.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530594/763049.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530594 763049 ERR3530592 756668 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530592 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530592 1a3e6902566044cdf52dfeb429556f45;e0c3c308c4adf91167a7ddf12d120723 1313 165521264 aac3aa37e0b2eebaeb0eea2eb010c820;8c98e219509b477aed37811b63ac8436 SAMEA5785610 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530592/ERR3530592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530592/ERR3530592_2.fastq.gz 1782562 WGS 756668 RANDOM 119041936;123060594 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d830a45ea4fd021c303178d322c04413 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530592/ERR3530592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530592/ERR3530592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530592/756668.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530592/756668.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530592/ERR3530592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530592/ERR3530592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530592/756668.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530592/756668.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114345216;118307594 ERS3755753 ERX3548730 GENOMIC 353995015 2019-09-19 756668 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530592/756668.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530592/756668.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530592 756668 ERR3530593 721008 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530593 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530593 2b24b8cc78c5844a57d63ee89e50556c;8c52eb5efc7f71da52208d992e938e40 1313 258382007 c643933f5caeae1a93f5a4ebdae5ab16;28af2294449fb08a416e20b668e1ebaf SAMEA5785801 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530593/ERR3530593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530593/ERR3530593_2.fastq.gz 2691852 WGS 721008 RANDOM 185065195;187757370 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 64e91e6a4311aa26946783787822c8d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530593/ERR3530593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530593/ERR3530593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530593/721008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530593/721008.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530593/ERR3530593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530593/ERR3530593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530593/721008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530593/721008.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 178123593;180781587 ERS3755944 ERX3548921 GENOMIC 532701795 2019-09-19 721008 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530593/721008.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530593/721008.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530593 721008 ERR3530595 753496 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530595 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530595 b2f538965c72a3896c7c6269924be86d;0d2d9f30faccaa1bc0192ad4f69687b3 1313 168261767 dd27180044e4387245a9f501111986c1;eab63f46a72963c32492b52942f1f5d7 SAMEA5785696 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530595/ERR3530595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530595/ERR3530595_2.fastq.gz 1860044 WGS 753496 RANDOM 122873913;123898615 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f9cf205715a1ad9735b3e4a7717a5189 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530595/ERR3530595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530595/ERR3530595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530595/753496.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530595/753496.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530595/ERR3530595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530595/ERR3530595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530595/753496.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530595/753496.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117893514;118945046 ERS3755839 ERX3548816 GENOMIC 366343114 2019-09-19 753496 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530595/753496.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530595/753496.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530595 753496 ERR3530596 308566 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530596 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530596 80987a1c5d115d0e166b85435eb817eb;58c395fbd3c181003635b93801e7150c 1313 189526996 283b8da289d3ceb92159487e5158b037;d7419bb9a68aab8ac5267d6806bdef5f SAMEA5786221 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530596/ERR3530596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530596/ERR3530596_2.fastq.gz 2108219 WGS 308566 RANDOM 138241642;139567906 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9d74d64bef4605a984cb167d2cd439ca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530596/ERR3530596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530596/ERR3530596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530596/308566.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530596/308566.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530596/ERR3530596_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530596/ERR3530596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530596/308566.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530596/308566.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 132695671;134016616 ERS3756363 ERX3549340 GENOMIC 411880538 2019-09-19 308566 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530596/308566.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530596/308566.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530596 308566 ERR3530599 300841 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530599 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530599 09888897f732334a869ca2c03b701f6a;fbd7ec3fd03406b0fe357f9a64ac23af 1313 124812548 e18e392f6237e24a10444e50d01598ff;0b16c0fe1fcfca3af9a3d91fa0c43c10 SAMEA5786298 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530599/ERR3530599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530599/ERR3530599_2.fastq.gz 1467488 WGS 300841 RANDOM 90579436;91610935 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 894e2dea35bb77bba5096cc961ffb4b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530599/ERR3530599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530599/ERR3530599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530599/300841.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530599/300841.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530599/ERR3530599_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530599/ERR3530599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530599/300841.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530599/300841.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86978883;87983064 ERS3756440 ERX3549417 GENOMIC 289617535 2019-09-19 300841 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530599/300841.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530599/300841.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530599 300841 ERR3530597 717965 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530597 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530597 fbb92526ec4997238172611a2aa5f234;41ae611cdf957ea57d93a625b86ea64b 1313 168610214 de7465aa8e00e6ba22c16fd25b52e4b7;81abec5f73aa84a0e570ec3a42782b4d SAMEA5785976 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530597/ERR3530597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530597/ERR3530597_2.fastq.gz 1983523 WGS 717965 RANDOM 124453632;125990060 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c7d4490f79a28b9a3b9564e4b8c2d285 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530597/ERR3530597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530597/ERR3530597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530597/717965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530597/717965.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530597/ERR3530597_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530597/ERR3530597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530597/717965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530597/717965.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119129947;120655910 ERS3756118 ERX3549095 GENOMIC 392609400 2019-09-19 717965 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530597/717965.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530597/717965.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530597 717965 ERR3530598 720272 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530598 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530598 63b3051db15eb3622277f32105c5f135;f9883495bb1d04328893ac62905acc4d 1313 154096804 2de5dae846b015eedc3be90acb9a37e6;1c407a4149f959532eb19fd18de46f67 SAMEA5785870 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530598/ERR3530598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530598/ERR3530598_2.fastq.gz 1719276 WGS 720272 RANDOM 111287673;114555431 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9a6270b86597b70f0f1e48d0c1d0ac98 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530598/ERR3530598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530598/ERR3530598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530598/720272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530598/720272.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530598/ERR3530598_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530598/ERR3530598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530598/720272.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530598/720272.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106698351;109949044 ERS3756013 ERX3548990 GENOMIC 336918053 2019-09-19 720272 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530598/720272.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530598/720272.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530598 720272 ERR3530600 753414 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530600 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530600 a085ac46a85637ac399770ed4ddbed5f;9e5f686b6b24f11b51ea78624805c5f8 1313 188098130 6a5636ae724880352db3e74204138343;b880b29b7e1dccf6224d7a52a6d4595a SAMEA5785776 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530600/ERR3530600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530600/ERR3530600_2.fastq.gz 2058154 WGS 753414 RANDOM 134953143;139311563 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ba734ddc14c16e0650f329b06b96296f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530600/ERR3530600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530600/ERR3530600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530600/753414.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530600/753414.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530600/ERR3530600_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530600/ERR3530600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530600/753414.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530600/753414.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129472130;133833729 ERS3755919 ERX3548896 GENOMIC 405401111 2019-09-19 753414 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530600/753414.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530600/753414.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530600 753414 ERR3530601 318635 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530601 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530601 0dc285cdda6426e80f3f3dbfbc05bebb;4857b9229180b46c8cca5df30a491271 1313 184084889 2462e3eef191c61ad6228116b6954186;db44e7b5d404326d17d0dd85a70816d2 SAMEA5786124 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530601/ERR3530601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530601/ERR3530601_2.fastq.gz 1941976 WGS 318635 RANDOM 131633306;133610327 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b0f2f67b048d15870eacd798db0cd960 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530601/ERR3530601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530601/ERR3530601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530601/318635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530601/318635.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530601/ERR3530601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530601/ERR3530601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530601/318635.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530601/318635.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 126484247;128449590 ERS3756266 ERX3549243 GENOMIC 376587183 2019-09-19 318635 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530601/318635.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530601/318635.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530601 318635 ERR3530602 756600 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530602 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530602 5b1334de191deeadce974811e76a05f9;85350ac913b2fee5836837ea01f2d0cd 1313 113587193 a1bdd975f92996dd058d7953ed91c14d;03837cf6c4e7d8f1f902358dde0c1653 SAMEA5785677 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530602/ERR3530602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530602/ERR3530602_2.fastq.gz 1219327 WGS 756600 RANDOM 81615261;84225083 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5daff08cba16a0cf5258054f7f523d48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530602/ERR3530602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530602/ERR3530602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530602/756600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530602/756600.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530602/ERR3530602_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530602/ERR3530602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530602/756600.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530602/756600.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78573917;81150548 ERS3755820 ERX3548797 GENOMIC 242613864 2019-09-19 756600 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530602/756600.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530602/756600.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530602 756600 ERR3530603 304266 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530603 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530603 c4add96210c2f288209b160e9888f858;cfda63cdd162f2edf86b0c2377e67776 1313 186396668 1118d58be66f0413a4fe4d71325dd021;72f0653738e7fe9f0e3cb02766082466 SAMEA5786258 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530603/ERR3530603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530603/ERR3530603_2.fastq.gz 2198697 WGS 304266 RANDOM 137488962;138212785 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5896770a3561380b0ad2e656c67b3630 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530603/ERR3530603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530603/ERR3530603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530603/304266.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530603/304266.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530603/ERR3530603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530603/ERR3530603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530603/304266.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530603/304266.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 131771359;132485510 ERS3756400 ERX3549377 GENOMIC 429656001 2019-09-19 304266 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530603/304266.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530603/304266.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530603 304266 ERR3530605 720223 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530605 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530605 1008fdef5e75cdf43290e7477d8b121f;650577f771a688479a791ead5a02b524 1313 85608531 d9833f4fd75caa90d610b4e45b41663b;ebfdeea0c0298791606c0b310000757d SAMEA5785911 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530605/ERR3530605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530605/ERR3530605_2.fastq.gz 954420 WGS 720223 RANDOM 62650962;63283407 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5a23b6838b1f9ba66f0f28e3f13f57ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530605/ERR3530605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530605/ERR3530605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530605/720223.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530605/720223.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530605/ERR3530605_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530605/ERR3530605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530605/720223.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530605/720223.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60213868;60840010 ERS3756054 ERX3549031 GENOMIC 189059669 2019-09-19 720223 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530605/720223.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530605/720223.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530605 720223 ERR3530604 717934 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530604 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530604 59d04148290dfe016684199c93a8591e;6905102e47cb8198dbca84a759561e82 1313 100413448 98df8ea853f869c1712f80856f7fb20c;41dcdf184c52d802ee898ef3a1571d58 SAMEA5786006 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530604/ERR3530604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530604/ERR3530604_2.fastq.gz 1178121 WGS 717934 RANDOM 73429026;76236190 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3e0a09935ecbe10ae046f39f5b05ef2b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530604/ERR3530604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530604/ERR3530604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530604/717934.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530604/717934.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530604/ERR3530604_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530604/ERR3530604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530604/717934.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530604/717934.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70440382;73232070 ERS3756148 ERX3549125 GENOMIC 235294515 2019-09-19 717934 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530604/717934.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530604/717934.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530604 717934 ERR3530606 308634 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530606 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530606 2c35368907ae84ef01554ae373036583;39b5501ed451851ff70e871062607678 1313 51895400 bb86e650318353217b6bf6f05cdef7f7;568c7766ea8a31a557b094a571580adc SAMEA5786160 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530606/ERR3530606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530606/ERR3530606_2.fastq.gz 574657 WGS 308634 RANDOM 37683771;38407440 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6687a8aea8e96bb36b457418c614133e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530606/ERR3530606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530606/ERR3530606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530606/308634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530606/308634.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530606/ERR3530606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530606/ERR3530606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530606/308634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530606/308634.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 36258694;36972281 ERS3756302 ERX3549279 GENOMIC 111397695 2019-09-19 308634 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530606/308634.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530606/308634.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530606 308634 ERR3530607 759547 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530607 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530607 224d18b6a95098ee9c9fe4dd83822558;787907f100b904ababc53be20ffb5fbb 1313 157557019 5a1dcb6d3f6ec9ab8a197ef3603c1443;0a312d738deda97f5dc9a0571771b1f4 SAMEA5785460 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530607/ERR3530607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530607/ERR3530607_2.fastq.gz 1864257 WGS 759547 RANDOM 114391997;119656685 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. db83389abdb32f4de96e4bba04f779a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530607/ERR3530607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530607/ERR3530607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530607/759547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530607/759547.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530607/ERR3530607_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530607/ERR3530607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530607/759547.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530607/759547.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109418159;114679420 ERS3755603 ERX3548580 GENOMIC 366664842 2019-09-19 759547 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530607/759547.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530607/759547.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530607 759547 ERR3530608 308632 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530608 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530608 bea4fd968c22ff44f716fbd2ec007d55;dd64ce5d1ad7eaf7b3957f63b5bac311 1313 210367289 18ca1bcd925e9e45d4855b736f2a277c;89f6576079c03cada3c3738877bab647 SAMEA5786162 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530608/ERR3530608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530608/ERR3530608_2.fastq.gz 2325717 WGS 308632 RANDOM 152334234;155538623 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e4be55656a1895a18be6147ba8feada9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530608/ERR3530608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530608/ERR3530608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530608/308632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530608/308632.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530608/ERR3530608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530608/ERR3530608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530608/308632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530608/308632.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 146335495;149532142 ERS3756304 ERX3549281 GENOMIC 458667709 2019-09-19 308632 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530608/308632.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530608/308632.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530608 308632 ERR3530609 670259 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530609 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530609 7f1249bddc76d63dfc54d5fd2b2c6cf7;ad33d6836f89f36cc1b4a1e7a46675fd 1313 147755897 fbba20769eafdc4fc0242f321faf6305;ed6d4c3ce822fd29e78faba1112996c6 SAMEA5786062 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530609/ERR3530609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530609/ERR3530609_2.fastq.gz 1734676 WGS 670259 RANDOM 108699860;111288696 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. df1b0859e9b28a61df6c3d1e23402ac3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530609/ERR3530609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530609/ERR3530609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530609/670259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530609/670259.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530609/ERR3530609_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530609/ERR3530609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530609/670259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530609/670259.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104101021;106679361 ERS3756204 ERX3549181 GENOMIC 345131506 2019-09-19 670259 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530609/670259.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530609/670259.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530609 670259 ERR3530610 717968 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530610 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530610 bb862869bb173da69244401e5939f229;ae26510e4e53605765d300f314a35b77 1313 142345094 c983f8d79d4f8f0b5270d744f2d3e196;0e115a97a1ac0b3626fb48ac93a65921 SAMEA5785973 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530610/ERR3530610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530610/ERR3530610_2.fastq.gz 1686214 WGS 717968 RANDOM 104772469;107747600 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. aa203e67fae7dcb17c07ed4f8075ef8a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530610/ERR3530610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530610/ERR3530610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530610/717968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530610/717968.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530610/ERR3530610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530610/ERR3530610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530610/717968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530610/717968.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100256471;103226148 ERS3756115 ERX3549092 GENOMIC 335909646 2019-09-19 717968 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530610/717968.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530610/717968.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530610 717968 ERR3530671 753433 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530671 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530671 6add5b5b7d9da09911374f8819c0d9df;b4b97e78cad8f915e9c2158920dba368 1313 97489355 bdf730ad02f678153b4a9c6604738bfc;fd92f38ee509f1b893292464325c62f3 SAMEA5785757 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530671/ERR3530671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530671/ERR3530671_2.fastq.gz 1047977 WGS 753433 RANDOM 68322932;73353870 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8a59c737be69dd7635559ad84eeb6686 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530671/ERR3530671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530671/ERR3530671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530671/753433.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530671/753433.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530671/ERR3530671_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530671/ERR3530671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530671/753433.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530671/753433.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 65669830;70673942 ERS3755900 ERX3548877 GENOMIC 207760609 2019-09-19 753433 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530671/753433.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530671/753433.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530671 753433 ERR3530612 720987 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530612 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530612 f4713cb97c2b6df796f759c1bba6be9d;0fc7e6449e052648411baf3301646f3d 1313 191814757 1da4a4cfeba127f95994b6f377c47dd7;c30768e6f4c89ff9cd86aa8d1363fe04 SAMEA5785821 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530612/ERR3530612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530612/ERR3530612_2.fastq.gz 2022366 WGS 720987 RANDOM 138074221;139363482 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cc9897d5a854dfceed3c872acc6b6162 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530612/ERR3530612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530612/ERR3530612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530612/720987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530612/720987.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530612/ERR3530612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530612/ERR3530612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530612/720987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530612/720987.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 132711820;133988462 ERS3755964 ERX3548941 GENOMIC 395107194 2019-09-19 720987 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530612/720987.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530612/720987.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530612 720987 ERR3530613 720946 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530613 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530613 34d7c64dea3801e8747bfbd9a7703943;37c5d00506157c09bdb9a6bf627761b0 1313 60958334 eec69ee7c9afc87897aacb7c3214e4fe;d03682968de94c1b9f7dabfdfa3bc444 SAMEA5785862 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530613/ERR3530613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530613/ERR3530613_2.fastq.gz 646200 WGS 720946 RANDOM 44083765;44388661 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6f65880df7ec151e6c79a37e0b469f28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530613/ERR3530613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530613/ERR3530613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530613/720946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530613/720946.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530613/ERR3530613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530613/ERR3530613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530613/720946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530613/720946.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 42463482;42762727 ERS3756005 ERX3548982 GENOMIC 125013684 2019-09-19 720946 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530613/720946.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530613/720946.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530613 720946 ERR3530614 756629 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530614 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530614 2a53b048da03c0c08e5c5d37df4e7cd4;0eb408651e8d3dc69815542590055d99 1313 225807228 a276dbd334106bc9138d4be9a242d5e8;7d3f7281ba3f951e64b65088219d64ef SAMEA5785648 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530614/ERR3530614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530614/ERR3530614_2.fastq.gz 2463902 WGS 756629 RANDOM 164779127;165905559 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c85ce0cf5bf6abfd3952528eb4ac3764 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530614/ERR3530614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530614/ERR3530614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530614/756629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530614/756629.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530614/ERR3530614_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530614/ERR3530614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530614/756629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530614/756629.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 158499903;159616729 ERS3755791 ERX3548768 GENOMIC 490842387 2019-09-19 756629 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530614/756629.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530614/756629.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530614 756629 ERR3530615 756634 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530615 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530615 f1eaa984ec9df4f574cf6af07c3588fb;39897714173916ee90467c30bc954537 1313 114992483 7b561b38e9cb82788780628a7880ef3e;187ba1801d1e32db88c2f4af80208257 SAMEA5785643 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530615/ERR3530615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530615/ERR3530615_2.fastq.gz 1230226 WGS 756634 RANDOM 83227262;84759316 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cb0fccfd4531345a119e300b42df1396 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530615/ERR3530615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530615/ERR3530615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530615/756634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530615/756634.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530615/ERR3530615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530615/ERR3530615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530615/756634.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530615/756634.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80151779;81646519 ERS3755786 ERX3548763 GENOMIC 245137053 2019-09-19 756634 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530615/756634.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530615/756634.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530615 756634 ERR3530616 756658 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530616 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530616 c5e4d5f2f1fdad7cbd2229bac3cd0f97;e235e4cb62981cad8fd4d8a91450170c 1313 131412270 3e35494c51c95da06a63660b824f0a83;1a61b61d450ea5d22f190322107cdf1d SAMEA5785620 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530616/ERR3530616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530616/ERR3530616_2.fastq.gz 1423721 WGS 756658 RANDOM 95634988;96864720 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ecb53d5c0b3996bd0964513f497268e5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530616/ERR3530616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530616/ERR3530616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530616/756658.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530616/756658.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530616/ERR3530616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530616/ERR3530616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530616/756658.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530616/756658.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92029141;93223784 ERS3755763 ERX3548740 GENOMIC 283082550 2019-09-19 756658 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530616/756658.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530616/756658.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530616 756658 ERR3530617 720984 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530617 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530617 1cae864748b758f749821b34177bf3ba;4589f249b4cb18508e67e06b8cddac62 1313 142167339 5d91703a52682734ca01a44aaec3cddd;10b1c497502f4bd893cb633b4b54abcc SAMEA5785824 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530617/ERR3530617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530617/ERR3530617_2.fastq.gz 1485171 WGS 720984 RANDOM 101796247;103656773 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c2bd9014ce520f706f8926388e7226af ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530617/ERR3530617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530617/ERR3530617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530617/720984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530617/720984.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530617/ERR3530617_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530617/ERR3530617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530617/720984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530617/720984.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97949086;99777477 ERS3755967 ERX3548944 GENOMIC 291122505 2019-09-19 720984 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530617/720984.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530617/720984.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530617 720984 ERR3530618 300845 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530618 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530618 eb0346d1839f5f91bd6c5e2731398701;aeb0f7a30233e2b2e075d05d19b07ddc 1313 165616696 d496051d5134a5fd65363189b0b6bd7e;c6ae7cb751be33ce2a04f61604cc346b SAMEA5786295 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530618/ERR3530618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530618/ERR3530618_2.fastq.gz 1939856 WGS 300845 RANDOM 119124558;122410111 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b9779b46156de65e5450669b935b8075 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530618/ERR3530618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530618/ERR3530618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530618/300845.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530618/300845.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530618/ERR3530618_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530618/ERR3530618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530618/300845.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530618/300845.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114195093;117440972 ERS3756437 ERX3549414 GENOMIC 382539116 2019-09-19 300845 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530618/300845.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530618/300845.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530618 300845 ERR3530620 756609 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530620 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530620 8e601b7454787b86c1acc9ce83739d20;79e141079834148f5a1fb0e990c7f68a 1313 121581084 9a9e6c43c0002842e0da4feebfb9bd57;5565211148bbc243a9d02431ae245351 SAMEA5785668 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530620/ERR3530620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530620/ERR3530620_2.fastq.gz 1277444 WGS 756609 RANDOM 85852800;90505326 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d940812a463f7945bddcb48f2460889e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530620/ERR3530620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530620/ERR3530620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530620/756609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530620/756609.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530620/ERR3530620_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530620/ERR3530620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530620/756609.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530620/756609.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82678215;87237228 ERS3755811 ERX3548788 GENOMIC 253918978 2019-09-19 756609 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530620/756609.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530620/756609.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530620 756609 ERR3530619 720221 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530619 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530619 e92a589e82b6380c02da93f7cf0c6fc9;926a6dc9fe3d6e2bb0119168dac3488c 1313 328300057 8e668665791ef3230795fb342573f408;5b63d2911e460b6062b0d40794045891 SAMEA5785913 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530619/ERR3530619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530619/ERR3530619_2.fastq.gz 3708210 WGS 720221 RANDOM 241210043;242392340 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3d0b2a759d2d1ab353a849a323c0f025 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530619/ERR3530619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530619/ERR3530619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530619/720221.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530619/720221.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530619/ERR3530619_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530619/ERR3530619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530619/720221.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530619/720221.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 230608923;231800350 ERS3756056 ERX3549033 GENOMIC 732565080 2019-09-19 720221 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530619/720221.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530619/720221.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530619 720221 ERR3530621 757978 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530621 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530621 d35f450b31197d95148020cf2ff9b81c;42b8541fdbe1d6e4a094296bf68e4660 1313 130395674 a4f3c9b98ac02e942509464926ec399d;48ac7707199820824cfe142fe6a4aeb7 SAMEA5785552 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530621/ERR3530621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530621/ERR3530621_2.fastq.gz 1573131 WGS 757978 RANDOM 96188417;99044900 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bd7a9d7ec23c3a8e9451b0266bb5a8da ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530621/ERR3530621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530621/ERR3530621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530621/757978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530621/757978.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530621/ERR3530621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530621/ERR3530621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530621/757978.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530621/757978.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92047957;94895797 ERS3755695 ERX3548672 GENOMIC 312930726 2019-09-19 757978 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530621/757978.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530621/757978.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530621 757978 ERR3530622 308612 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530622 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530622 a63e806f2b385ae72fcdb2ef5252376c;e281f92ddfc95bebdf5c42bdc08f64d0 1313 154389750 b8a087a95bd97023047d61347a80b756;fbbe0b7f56811c9044d3b564d3beb8a8 SAMEA5786179 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530622/ERR3530622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530622/ERR3530622_2.fastq.gz 1682436 WGS 308612 RANDOM 111449266;114569367 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3824caa236ca9c6ff85abd7a8ccca922 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530622/ERR3530622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530622/ERR3530622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530622/308612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530622/308612.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530622/ERR3530622_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530622/ERR3530622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530622/308612.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530622/308612.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 107004343;110093176 ERS3756321 ERX3549298 GENOMIC 333120634 2019-09-19 308612 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530622/308612.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530622/308612.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530622 308612 ERR3530623 720228 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530623 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530623 f61b266b1e941cb0b0a518785ebb9492;fa4df7f6adcc69a5b10f630f461936b7 1313 132307260 ba9b6539279cb526da8b97d5ded8f2ac;bbe0ed614160f774634f4e55f1df4442 SAMEA5785906 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530623/ERR3530623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530623/ERR3530623_2.fastq.gz 1490819 WGS 720228 RANDOM 97144317;97892119 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 76e5bb1209bbcea548e9d0fe41101f64 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530623/ERR3530623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530623/ERR3530623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530623/720228.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530623/720228.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530623/ERR3530623_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530623/ERR3530623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530623/720228.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530623/720228.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93243733;93981092 ERS3756049 ERX3549026 GENOMIC 295970958 2019-09-19 720228 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530623/720228.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530623/720228.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530623 720228 ERR3530625 756637 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530625 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530625 819e51a59e8ac0b692a2a6e77eca838f;3320a4a699cdf9ad869bbc712ee59d8d 1313 136025740 2c86f551d92bc65148d248008e193bef;eb9b98bd68b5e4434eee3aec46862f96 SAMEA5785640 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530625/ERR3530625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530625/ERR3530625_2.fastq.gz 1470338 WGS 756637 RANDOM 99197917;100228648 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c2fe5f12bc007ee80263b8a3300280b2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530625/ERR3530625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530625/ERR3530625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530625/756637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530625/756637.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530625/ERR3530625_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530625/ERR3530625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530625/756637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530625/756637.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 95464547;96462966 ERS3755783 ERX3548760 GENOMIC 293222485 2019-09-19 756637 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530625/756637.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530625/756637.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530625 756637 ERR3530624 759530 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530624 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530624 119e4b9e3a2d461dbae37a5740dd82d7;f3624059def3e4f9ec6f2a2cfe5cfa5f 1313 142138054 919456a970e34ee2a7f0079b25fbccb2;28e1b0d6684f83144552a8932695dc19 SAMEA5785477 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530624/ERR3530624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530624/ERR3530624_2.fastq.gz 1677029 WGS 759530 RANDOM 104732003;106917532 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c90fad48f3cdd45ce95d6106da0cd1f5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530624/ERR3530624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530624/ERR3530624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530624/759530.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530624/759530.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530624/ERR3530624_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530624/ERR3530624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530624/759530.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530624/759530.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100216869;102393425 ERS3755620 ERX3548597 GENOMIC 332589201 2019-09-19 759530 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530624/759530.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530624/759530.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530624 759530 ERR3530626 720965 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530626 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530626 a16e3f56e704e76219f3c30d2f5e2acf;1d61c9cc1adc37f36dbfd541b8591369 1313 374422958 f6e836fb6ceb3f2443987f5f5eece8a3;95acb85c8035edcd703fb9a0f628058f SAMEA5785843 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530626/ERR3530626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530626/ERR3530626_2.fastq.gz 3934161 WGS 720965 RANDOM 270987312;272608983 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 64cf751a1afa0521c43dcb8f17e7cdab ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530626/ERR3530626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530626/ERR3530626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530626/720965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530626/720965.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530626/ERR3530626_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530626/ERR3530626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530626/720965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530626/720965.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 259783601;261392465 ERS3755986 ERX3548963 GENOMIC 777036495 2019-09-19 720965 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530626/720965.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530626/720965.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530626 720965 ERR3530627 717898 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530627 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530627 4e82f1a96e455d8a21f5191cd0565bdc;985ae3a0ebbffb1170a9a3139fdb8e2d 1313 151359203 b9a439f060b8ccb36f00d408e8fb2d4e;e8a4b7c672838a5f14c282105d4a1bca SAMEA5786024 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530627/ERR3530627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530627/ERR3530627_2.fastq.gz 1775085 WGS 717898 RANDOM 110922838;114383275 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a931ef15fb5fe0a0c7160e0a1b3d6025 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530627/ERR3530627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530627/ERR3530627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530627/717898.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530627/717898.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530627/ERR3530627_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530627/ERR3530627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530627/717898.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530627/717898.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106187621;109640399 ERS3756166 ERX3549143 GENOMIC 353713142 2019-09-19 717898 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530627/717898.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530627/717898.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530627 717898 ERR3530628 759505 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530628 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530628 0c9e986231ab0914749aeebf36cbb6b9;67c49af7d0d52c93dae0e73cfa8446ef 1313 168878058 1effdab5586a939dbd17eab8b831561a;a2c92c9bc46e21889a6b357f6bc8361e SAMEA5785502 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530628/ERR3530628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530628/ERR3530628_2.fastq.gz 2009304 WGS 759505 RANDOM 124496937;127349656 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9e111eb37397c74a901ee802415ef1ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530628/ERR3530628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530628/ERR3530628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530628/759505.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530628/759505.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530628/ERR3530628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530628/ERR3530628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530628/759505.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530628/759505.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119186970;122034598 ERS3755645 ERX3548622 GENOMIC 399936275 2019-09-19 759505 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530628/759505.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530628/759505.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530628 759505 ERR3530630 304270 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530630 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530630 9b3cd21a70f3d0f705ad4a1a798b1a3e;58a4d4159d7840fcb1b79b5f04ac1b3f 1313 168953640 d2a057f6526ad6fb9075a3cae2366216;f848c107e296a71117f5fab2941aceac SAMEA5786254 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530630/ERR3530630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530630/ERR3530630_2.fastq.gz 1955611 WGS 304270 RANDOM 124245088;126091965 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 36410c280bc55e205cd8d9f421f5ed00 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530630/ERR3530630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530630/ERR3530630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530630/304270.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530630/304270.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530630/ERR3530630_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530630/ERR3530630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530630/304270.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530630/304270.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119093567;120927414 ERS3756396 ERX3549373 GENOMIC 389251263 2019-09-19 304270 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530630/304270.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530630/304270.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530630 304270 ERR3530629 300861 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530629 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530629 14b07060c4bc6667e6010204f46feb6f;613e0a2b2ee1af417d4f927a36abbdb4 1313 187468697 bc981857492a24df5540e468e5cf2403;60eb1e0c546e01495f53180848b3bbc5 SAMEA5786279 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530629/ERR3530629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530629/ERR3530629_2.fastq.gz 2205796 WGS 300861 RANDOM 134497940;138512546 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. de0b4ae31c2dcfe51f06335784915467 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530629/ERR3530629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530629/ERR3530629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530629/300861.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530629/300861.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530629/ERR3530629_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530629/ERR3530629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530629/300861.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530629/300861.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 128970198;132941892 ERS3756421 ERX3549398 GENOMIC 435180706 2019-09-19 300861 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530629/300861.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530629/300861.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530629 300861 ERR3530631 308571 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530631 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530631 33638cdb5ec2df60eddc8ae45d1c0ca2;381f1159f3c14a6aa7e14f1ebbf563b7 1313 200824022 ea4bf44aeac273969b32ad1842150eef;0a805d1164f431bce669137259e53b40 SAMEA5786216 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530631/ERR3530631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530631/ERR3530631_2.fastq.gz 2214075 WGS 308571 RANDOM 146199724;147841398 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9894bd9d37a019c66378df5dea59d47 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530631/ERR3530631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530631/ERR3530631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530631/308571.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530631/308571.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530631/ERR3530631_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530631/ERR3530631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530631/308571.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530631/308571.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140472705;142102422 ERS3756358 ERX3549335 GENOMIC 438639232 2019-09-19 308571 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530631/308571.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530631/308571.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530631 308571 ERR3530672 753454 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530672 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530672 df51b40718c5411ddcfc8be61ab1dc75;0bc14d26e4cae05fee7caae679790980 1313 131583141 ce25216b56c1dea2b4bf62c5a5803fb3;67d1b1ac8ab7f5ba53b881985e25f9bb SAMEA5785736 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530672/ERR3530672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530672/ERR3530672_2.fastq.gz 1450300 WGS 753454 RANDOM 95919456;96938097 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 71d46cda63b8fb17c08c89baf58e9127 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530672/ERR3530672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530672/ERR3530672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530672/753454.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530672/753454.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530672/ERR3530672_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530672/ERR3530672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530672/753454.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530672/753454.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92190855;93207648 ERS3755879 ERX3548856 GENOMIC 288344413 2019-09-19 753454 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530672/753454.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530672/753454.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530672 753454 ERR3530633 308575 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530633 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530633 3f738d02aa9ce91fc0999aeab640ab76;4f2b485fcdc20f9fbdab6f5436f2568f 1313 205488733 af22c523003a18518a62730ca96d1412;4fe07aaea382e65e61758521452241a7 SAMEA5786212 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530633/ERR3530633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530633/ERR3530633_2.fastq.gz 2267278 WGS 308575 RANDOM 149140009;151629180 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 422668f5672912e7c835f105a9f8c10c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530633/ERR3530633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530633/ERR3530633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530633/308575.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530633/308575.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530633/ERR3530633_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530633/ERR3530633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530633/308575.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530633/308575.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143279975;145759234 ERS3756354 ERX3549331 GENOMIC 448387897 2019-09-19 308575 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530633/308575.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530633/308575.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530633 308575 ERR3530674 757964 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530674 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530674 53dd20f19ed80787e4212eb26201a699;1cd32284f23514b5adfe5742b6a63456 1313 75499089 2ff22ea4776702083dc113d68d1b76f3;27bedbad5f453e0cd624ec3f4c208d05 SAMEA5785566 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530674/ERR3530674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530674/ERR3530674_2.fastq.gz 873260 WGS 757964 RANDOM 54602203;57694267 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7f64b8480cc2ae233c4842b47e53e81d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530674/ERR3530674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530674/ERR3530674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530674/757964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530674/757964.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530674/ERR3530674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530674/ERR3530674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530674/757964.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530674/757964.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 52405302;55504327 ERS3755709 ERX3548686 GENOMIC 173937289 2019-09-19 757964 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530674/757964.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530674/757964.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530674 757964 ERR3530635 755707 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530635 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530635 e72d41d880f32f914a7976deee04dcc1;94faf01a43e3672c9bc30a408e91798a 1313 161400459 dc24c255779d7e887343d137d6582c62;82f6dbbdc16d06fbab8f6ed11fcf800b SAMEA5785684 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530635/ERR3530635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530635/ERR3530635_2.fastq.gz 1862330 WGS 755707 RANDOM 117515580;121190710 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 46ae87567b79eeb86289e4a6b72309ca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530635/ERR3530635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530635/ERR3530635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530635/755707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530635/755707.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530635/ERR3530635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530635/ERR3530635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530635/755707.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530635/755707.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112532602;116214552 ERS3755827 ERX3548804 GENOMIC 369735150 2019-09-19 755707 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530635/755707.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530635/755707.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530635 755707 ERR3530691 757944 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530691 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530691 e4a173e73f56e5c102c5eff9ab18ab9e;7ce9a7e78aff8b42010b1b7162f3983c 1313 81960404 fecf55ff4433a95b1fbfe65acdb0ec85;8e70cb566f8e6f4bf5589d57e813034e SAMEA5785584 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530691/ERR3530691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530691/ERR3530691_2.fastq.gz 979747 WGS 757944 RANDOM 59644600;62921531 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c0c19103f6b64478b341eb015750766c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530691/ERR3530691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530691/ERR3530691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530691/757944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530691/757944.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530691/ERR3530691_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530691/ERR3530691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530691/757944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530691/757944.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57167132;60439089 ERS3755727 ERX3548704 GENOMIC 195053141 2019-09-19 757944 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530691/757944.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530691/757944.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530691 757944 ERR3530636 717892 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530636 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530636 35fc408c29b337cf6a3c19187cc22a4a;6609a5c754f02b19c113e236a9b2c43a 1313 146734772 e8bc0a96c0d6119c906cf88f8eab76ff;f26fbc08896c6befad0f6ae4fca80c8b SAMEA5786027 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530636/ERR3530636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530636/ERR3530636_2.fastq.gz 1761529 WGS 717892 RANDOM 109535659;110420070 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4381c253f5bd2da176d75d7e752f7bdb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530636/ERR3530636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530636/ERR3530636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530636/717892.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530636/717892.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530636/ERR3530636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530636/ERR3530636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530636/717892.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530636/717892.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104830380;105704533 ERS3756169 ERX3549146 GENOMIC 351451943 2019-09-19 717892 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530636/717892.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530636/717892.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530636 717892 ERR3530640 665061 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530640 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530640 d5de0334f82d7a968f7a549c898febb3;9be3c5b6a44bb663618e9f963f50f476 1313 130011830 5a78ec418c1748f7bb2bc4d2055750a4;e0898e56e6db2a6e7fced266b417b0e5 SAMEA5786073 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530640/ERR3530640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530640/ERR3530640_2.fastq.gz 1399537 WGS 665061 RANDOM 93920714;95276427 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c4df66ba16130538cd720bf317b9fd82 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530640/ERR3530640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530640/ERR3530640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530640/665061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530640/665061.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530640/ERR3530640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530640/ERR3530640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530640/665061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530640/665061.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90303311;91649420 ERS3756215 ERX3549192 GENOMIC 277611425 2019-09-19 665061 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530640/665061.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530640/665061.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530640 665061 ERR3530637 757948 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530637 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530637 135d189add39d368ec5005783b3f7573;6a3b9ddbbb42e26ad3106fb8fbd3cd45 1313 128664922 9856a75a0bb10407f778ca4ecf141a24;7d7b294fb0cb040ce42595dd1db296c3 SAMEA5785581 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530637/ERR3530637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530637/ERR3530637_2.fastq.gz 1537067 WGS 757948 RANDOM 93509406;98731318 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e06c699bdefb1bbb45509a93a6d7bedb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530637/ERR3530637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530637/ERR3530637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530637/757948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530637/757948.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530637/ERR3530637_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530637/ERR3530637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530637/757948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530637/757948.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89510373;94724091 ERS3755724 ERX3548701 GENOMIC 306451785 2019-09-19 757948 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530637/757948.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530637/757948.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530637 757948 ERR3530638 720973 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530638 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530638 3fbebf9e308f9db3442c2c0adee65c3e;a4db1e64e33034ea5fba2656ac2a5eeb 1313 88769938 5438878fbe79be3c95acf950247ca1e0;2b1e333f8ae5613aed96c3adb7ab4b9d SAMEA5785835 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530638/ERR3530638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530638/ERR3530638_2.fastq.gz 930436 WGS 720973 RANDOM 63999220;64647155 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 59a1febc837a5d006e53e6141d127607 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530638/ERR3530638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530638/ERR3530638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530638/720973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530638/720973.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530638/ERR3530638_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530638/ERR3530638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530638/720973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530638/720973.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 61662273;62298852 ERS3755978 ERX3548955 GENOMIC 182501130 2019-09-19 720973 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530638/720973.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530638/720973.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530638 720973 ERR3530708 756667 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530708 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530708 f2ba6551734a3a0a9d5f7b7a4faa0174;0b1fab5bfcb72ac1cc931416c0bbf362 1313 129174776 e95f7e635876061fdc8b1bd85dcd6653;479042f91d871287ce371e06d2f46cb6 SAMEA5785611 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530708/ERR3530708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530708/ERR3530708_2.fastq.gz 1382767 WGS 756667 RANDOM 92679291;95902060 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 448e1194f9bb9d59f6325a2f534498a8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530708/ERR3530708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530708/ERR3530708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530708/756667.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530708/756667.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530708/ERR3530708_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530708/ERR3530708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530708/756667.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530708/756667.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89194434;92362123 ERS3755754 ERX3548731 GENOMIC 274992126 2019-09-19 756667 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530708/756667.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530708/756667.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530708 756667 ERR3530645 717842 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530645 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530645 06c915766dbf62b701324dd9e00b539c;d4e26f68364bf9d2b0f53c0165f3329a 1313 108677301 3a84175103da2c4b02e9ddcc6db9e291;2670e47b6c7759d7f75b567c3967b85d SAMEA5786048 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530645/ERR3530645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530645/ERR3530645_2.fastq.gz 1279753 WGS 717842 RANDOM 79613615;82304373 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c153a26f2e25ab682c550555de5b5d9e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530645/ERR3530645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530645/ERR3530645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530645/717842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530645/717842.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530645/ERR3530645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530645/ERR3530645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530645/717842.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530645/717842.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 76318034;79005916 ERS3756190 ERX3549167 GENOMIC 255184032 2019-09-19 717842 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530645/717842.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530645/717842.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530645 717842 ERR3530644 657388 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530644 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530644 46faa2edadb1ddd2acbfc6882fd26b72;7469e34782409fe9610f26ac9be221bf 1313 220423425 645496f5b5b4acdc30e744c67d14b3b1;84b77230da0e4bc7ef853350c97726cb SAMEA5786085 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530644/ERR3530644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530644/ERR3530644_2.fastq.gz 2426698 WGS 657388 RANDOM 160883947;162348547 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. af49ef404008a1e1344f1a6407104921 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530644/ERR3530644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530644/ERR3530644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530644/657388.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530644/657388.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530644/ERR3530644_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530644/ERR3530644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530644/657388.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530644/657388.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 154702068;156163560 ERS3756227 ERX3549204 GENOMIC 481963660 2019-09-19 657388 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530644/657388.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530644/657388.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530644 657388 ERR3530642 289704 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530642 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530642 13ab00367c1c1a4beafcb8d1c55cb7dc;ce0ec0b28d2c38011f130d10ff61ff60 1313 200303312 faf62eb3cffd9f1bff7a7b7d40a02a8d;42c38cf2493a2ff9ca5b5399ffde9c3a SAMEA5786306 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530642/ERR3530642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530642/ERR3530642_2.fastq.gz 2202410 WGS 289704 RANDOM 142688125;144330683 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 32e3eeb42aef87761b52419155be7307 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530642/ERR3530642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530642/ERR3530642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530642/289704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530642/289704.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530642/ERR3530642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530642/ERR3530642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530642/289704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530642/289704.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137184266;138817398 ERS3756448 ERX3549425 GENOMIC 432185919 2019-09-19 289704 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530642/289704.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530642/289704.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530642 289704 ERR3530643 304292 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530643 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530643 e853f56043d697b866c05c69bd926324;04c76445664373e14459c81a4ffe9296 1313 96667481 344ab0036e9bf1c0ab93c509213ed61d;6a8679481754884382ebbf0160ce9001 SAMEA5786235 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530643/ERR3530643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530643/ERR3530643_2.fastq.gz 1125735 WGS 304292 RANDOM 71101876;72275879 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 24b624ad33c84a006847572d30aa150f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530643/ERR3530643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530643/ERR3530643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530643/304292.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530643/304292.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530643/ERR3530643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530643/ERR3530643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530643/304292.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530643/304292.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 68254916;69423840 ERS3756377 ERX3549354 GENOMIC 222895903 2019-09-19 304292 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530643/304292.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530643/304292.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530643 304292 ERR3530646 759523 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530646 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530646 9ecd6fe67af106cfa91c1f18a457deb6;274dd4f46a9a6288f37a51bdcdd12397 1313 169382005 d5441556989792d63a82e69b1bec5c9f;9c8723ed43c85c6336f0c9e7a5245f15 SAMEA5785484 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530646/ERR3530646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530646/ERR3530646_2.fastq.gz 2005423 WGS 759523 RANDOM 124137644;127943062 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a8825a1ee8611002f020cd44db426224 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530646/ERR3530646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530646/ERR3530646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530646/759523.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530646/759523.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530646/ERR3530646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530646/ERR3530646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530646/759523.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530646/759523.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118821021;122608278 ERS3755627 ERX3548604 GENOMIC 398177775 2019-09-19 759523 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530646/759523.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530646/759523.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530646 759523 ERR3530648 721016 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530648 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530648 958c4b379c4e254f5f8e71c17a5c4ff2;976cefcf6d2fba6a1d5cf3748f0330b6 1313 353854438 042ce00457d0261bf3a11c37088d8611;5d58fec5248690eb7d87d6d1f2e9cfc8 SAMEA5785793 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530648/ERR3530648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530648/ERR3530648_2.fastq.gz 3738820 WGS 721016 RANDOM 256484122;257876854 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 077a2f885096c525ce0217516cf7a1a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530648/ERR3530648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530648/ERR3530648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530648/721016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530648/721016.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530648/ERR3530648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530648/ERR3530648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530648/721016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530648/721016.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 245784851;247173151 ERS3755936 ERX3548913 GENOMIC 738650330 2019-09-19 721016 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530648/721016.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530648/721016.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530648 721016 ERR3530647 758004 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530647 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530647 653b5e730a112dc9d859841a6d103a4d;96cade7af4d00d86d55711e2ee1e6469 1313 148280981 c4933678b5ff818290d3e50e4542b0fc;fdb64578fab01d7ccf2cb504b0720152 SAMEA5785527 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530647/ERR3530647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530647/ERR3530647_2.fastq.gz 1788191 WGS 758004 RANDOM 109385456;112859503 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a7afc6451f698e097dc39dc2c7ddb035 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530647/ERR3530647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530647/ERR3530647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530647/758004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530647/758004.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530647/ERR3530647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530647/ERR3530647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530647/758004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530647/758004.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104582563;108050504 ERS3755670 ERX3548647 GENOMIC 356679553 2019-09-19 758004 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530647/758004.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530647/758004.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530647 758004 ERR3530649 720963 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530649 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530649 c8c510cef2e444a020d15d364af95442;8f60318bc18e07a0063285de438d6ae7 1313 128352002 4801144ca1c8f9cf8250f6a31ca5130a;63b079fa1027ed49db39e731634e2ecd SAMEA5785845 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530649/ERR3530649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530649/ERR3530649_2.fastq.gz 1317599 WGS 720963 RANDOM 90625805;93841508 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b00764b2dcc2f755343ea62cf548ee08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530649/ERR3530649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530649/ERR3530649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530649/720963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530649/720963.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530649/ERR3530649_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530649/ERR3530649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530649/720963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530649/720963.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87314046;90464999 ERS3755988 ERX3548965 GENOMIC 260118125 2019-09-19 720963 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530649/720963.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530649/720963.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530649 720963 ERR3530650 300862 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530650 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530650 7ed5e34b887197ef18743f4138b627cf;1c07c8d694daed44c141b11407f0704b 1313 149816264 deb02868e8bb68a2171b87c827310531;2ca1a48f62d3fc5bb0b9cf0f72ab8c25 SAMEA5786278 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530650/ERR3530650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530650/ERR3530650_2.fastq.gz 1790129 WGS 300862 RANDOM 108929503;109870363 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 39cda5d3b43115390eb3035d899c4816 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530650/ERR3530650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530650/ERR3530650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530650/300862.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530650/300862.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530650/ERR3530650_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530650/ERR3530650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530650/300862.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530650/300862.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104354981;105279569 ERS3756420 ERX3549397 GENOMIC 349269793 2019-09-19 300862 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530650/300862.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530650/300862.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530650 300862 ERR3530651 300877 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530651 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530651 93938b9637723889f77c884d1258929a;f18feb31eb952645d2caad58e79615a6 1313 182228023 6c6152c940f27b7c267a67aaf538a4e5;f2964f0940bff91d7b4b6954907a1b53 SAMEA5786266 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530651/ERR3530651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530651/ERR3530651_2.fastq.gz 2153099 WGS 300877 RANDOM 132110996;133800135 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d459ae7ca8ac3861508a18563923e764 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530651/ERR3530651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530651/ERR3530651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530651/300877.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530651/300877.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530651/ERR3530651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530651/ERR3530651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530651/300877.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530651/300877.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 126709911;128384185 ERS3756408 ERX3549385 GENOMIC 425807246 2019-09-19 300877 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530651/300877.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530651/300877.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530651 300877 ERR3530652 720970 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530652 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530652 cc8cb27382c5f1571b007c78bd5ae530;f666c1c8b32e4a546705edc72e9877b2 1313 58804472 74c87ab837c4d12371ac290132143b48;bba0de05f4fa0e83c2dee14113137e40 SAMEA5785838 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530652/ERR3530652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530652/ERR3530652_2.fastq.gz 622302 WGS 720970 RANDOM 42577041;42841888 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fbdd77a4cd00b03f64a8f6b98da386a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530652/ERR3530652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530652/ERR3530652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530652/720970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530652/720970.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530652/ERR3530652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530652/ERR3530652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530652/720970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530652/720970.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 41039291;41298943 ERS3755981 ERX3548958 GENOMIC 121003571 2019-09-19 720970 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530652/720970.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530652/720970.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530652 720970 ERR3530653 757998 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530653 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530653 9d6d256cd195bfca7de6a0ef716ec38a;d1077cdb207e741587c2e2c50247fe62 1313 144747453 1656881ed803c6d3768f94af42e2d460;01076ee750ea31590db8de8ee3c9db55 SAMEA5785532 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530653/ERR3530653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530653/ERR3530653_2.fastq.gz 1744594 WGS 757998 RANDOM 106044840;110628267 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 22b74a2a80a6c313059622a7a03c0e34 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530653/ERR3530653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530653/ERR3530653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530653/757998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530653/757998.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530653/ERR3530653_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530653/ERR3530653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530653/757998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530653/757998.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101380120;105968658 ERS3755675 ERX3548652 GENOMIC 345848470 2019-09-19 757998 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530653/757998.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530653/757998.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530653 757998 ERR3530654 757940 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530654 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530654 fe9fd3c7f49d467b2bafa790daa0ce97;4ef0a211f0770478f58d580b20897567 1313 207517930 700acfa8e95f986cabfded4b9f3cbf63;adbdd1f9a77a693da3a96ff9bd543a2d SAMEA5785588 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530654/ERR3530654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530654/ERR3530654_2.fastq.gz 2475249 WGS 757940 RANDOM 150622155;158197689 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2f50351bfcc970a3d73cf969f578dff4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530654/ERR3530654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530654/ERR3530654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530654/757940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530654/757940.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530654/ERR3530654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530654/ERR3530654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530654/757940.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530654/757940.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 144176200;151727471 ERS3755731 ERX3548708 GENOMIC 492480601 2019-09-19 757940 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530654/757940.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530654/757940.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530654 757940 ERR3530655 720243 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530655 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530655 d7b9c9c07179640c3347c786d77f36b9;86aea0396dccdc98d3084684cac8469f 1313 108368036 09aa0c1f39c68f920f2e6d71d849c8ea;741bf58da6b6d410b339917beb2955c4 SAMEA5785891 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530655/ERR3530655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530655/ERR3530655_2.fastq.gz 1206136 WGS 720243 RANDOM 78462531;80617579 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b4bccbcfabf4190d034f9e0f750ae6c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530655/ERR3530655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530655/ERR3530655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530655/720243.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530655/720243.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530655/ERR3530655_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530655/ERR3530655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530655/720243.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530655/720243.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75399020;77543393 ERS3756034 ERX3549011 GENOMIC 238445897 2019-09-19 720243 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530655/720243.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530655/720243.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530655 720243 ERR3530656 759519 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530656 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530656 63672945ee8ccbe76d77e7cf3e1236ff;1aa24ccb47c8e74d7892756200814f4d 1313 196188734 3f3311a69593026f3d7523d715d5a490;ded4f72116e4b3f491addcc3cc10bf8a SAMEA5785488 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530656/ERR3530656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530656/ERR3530656_2.fastq.gz 2304182 WGS 759519 RANDOM 143148681;148107457 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4887b6894ae91c545261512c1f7b752c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530656/ERR3530656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530656/ERR3530656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530656/759519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530656/759519.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530656/ERR3530656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530656/ERR3530656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530656/759519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530656/759519.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137158639;142101083 ERS3755631 ERX3548608 GENOMIC 459540682 2019-09-19 759519 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530656/759519.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530656/759519.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530656 759519 ERR3530658 300863 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530658 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530658 d9959a898a1f8be80bf590bc2a463168;be1ed83948a47535bf7fff186c39d64c 1313 78125216 e8449a421280e46932bb6989375ad957;4075967421e94bbd58dd6435338b44b5 SAMEA5786277 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530658/ERR3530658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530658/ERR3530658_2.fastq.gz 932612 WGS 300863 RANDOM 56984204;57436271 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6989c5b2d71d1c9c749cd9f569c5aefc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530658/ERR3530658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530658/ERR3530658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530658/300863.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530658/300863.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530658/ERR3530658_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530658/ERR3530658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530658/300863.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530658/300863.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 54733636;55170514 ERS3756419 ERX3549396 GENOMIC 182427310 2019-09-19 300863 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530658/300863.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530658/300863.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530658 300863 ERR3530657 665063 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530657 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530657 f7459c977e380f848abff9363cdc5d8d;2f6a7a45ddd02779419d24dc00d89a7f 1313 152899560 ead52fef0fc01774c4335632e93636fe;67e7aa52d603069edfbcd56f8840adee SAMEA5786071 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530657/ERR3530657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530657/ERR3530657_2.fastq.gz 1649140 WGS 665063 RANDOM 110240708;112266744 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d0e395b52e532bfdc59b83ff4d156bac ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530657/ERR3530657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530657/ERR3530657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530657/665063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530657/665063.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530657/ERR3530657_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530657/ERR3530657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530657/665063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530657/665063.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105852107;107864150 ERS3756213 ERX3549190 GENOMIC 327091793 2019-09-19 665063 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530657/665063.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530657/665063.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530657 665063 ERR3530659 721731 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530659 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530659 3ab8423bd86a15b5fc5a4c8d88b1230e;866925b8688a2a552d6cebb44708b1d0 1313 114452156 cb34aec41653766fed5a26f921672685;9794be804e29b70a635e24f3337983e5 SAMEA5785787 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530659/ERR3530659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530659/ERR3530659_2.fastq.gz 1198331 WGS 721731 RANDOM 81106434;83734382 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 50821dc5824dd8500923ff0e1a6fc273 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530659/ERR3530659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530659/ERR3530659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530659/721731.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530659/721731.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530659/ERR3530659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530659/ERR3530659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530659/721731.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530659/721731.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78138856;80761787 ERS3755930 ERX3548907 GENOMIC 235387853 2019-09-19 721731 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530659/721731.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530659/721731.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530659 721731 ERR3530660 756671 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530660 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530660 408c023e9d3e87d81da7c983b42a7907;b0c214817c0af75ec0240f6778dedb9e 1313 207468063 c07fd5366ca062d7723bef00cd9a7f9d;6306276fa2b341e46606017fecaa53d3 SAMEA5785607 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530660/ERR3530660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530660/ERR3530660_2.fastq.gz 2245875 WGS 756671 RANDOM 150177243;153281689 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fa3ffa696e09cf5ca0fc7721783d3700 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530660/ERR3530660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530660/ERR3530660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530660/756671.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530660/756671.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530660/ERR3530660_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530660/ERR3530660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530660/756671.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530660/756671.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 144413376;147482440 ERS3755750 ERX3548727 GENOMIC 447152621 2019-09-19 756671 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530660/756671.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530660/756671.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530660 756671 ERR3530661 717983 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530661 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530661 b29897dc6fea1a8ae01bc8f79885e704;dbc3e5e3796f34fb37100eb01c7891d8 1313 97734503 e0916daa0af206901511c9af10068c1e;0d4766ab5e964e5a03d6a2fa8f8b4639 SAMEA5785960 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530661/ERR3530661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530661/ERR3530661_2.fastq.gz 1141587 WGS 717983 RANDOM 72071987;73008484 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 618091925dcccbabae43c59a7c2bdaa8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530661/ERR3530661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530661/ERR3530661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530661/717983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530661/717983.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530661/ERR3530661_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530661/ERR3530661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530661/717983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530661/717983.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 69149617;70075847 ERS3756102 ERX3549079 GENOMIC 224681605 2019-09-19 717983 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530661/717983.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530661/717983.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530661 717983 ERR3530662 720944 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530662 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530662 c0132adddc26aa1e95ee3c19db9c3932;b14f8f2201a719138099add3ac4a2a23 1313 214055744 a37167276511ab3e1f25912fdcb67aff;93dd057ce14ee4416523882b3f42ab19 SAMEA5785864 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530662/ERR3530662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530662/ERR3530662_2.fastq.gz 2241342 WGS 720944 RANDOM 153996370;155463211 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. aae38396d586e5a34fa70100d45db952 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530662/ERR3530662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530662/ERR3530662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530662/720944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530662/720944.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530662/ERR3530662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530662/ERR3530662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530662/720944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530662/720944.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 148190853;149634838 ERS3756007 ERX3548984 GENOMIC 442279937 2019-09-19 720944 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530662/720944.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530662/720944.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530662 720944 ERR3530663 657384 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530663 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530663 85053318c572e471244bb747917c0366;602b3fddb49cd4164e9742877de4f301 1313 156853711 bb647df48f1487118021aea35c62bf42;284ed599e17d8517c6e32ac172aa7d2f SAMEA5786089 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530663/ERR3530663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530663/ERR3530663_2.fastq.gz 1722296 WGS 657384 RANDOM 113572347;116162396 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 975cdef1bd0fdecf75329e3aaff0073d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530663/ERR3530663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530663/ERR3530663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530663/657384.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530663/657384.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530663/ERR3530663_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530663/ERR3530663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530663/657384.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530663/657384.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109038377;111616373 ERS3756231 ERX3549208 GENOMIC 337978385 2019-09-19 657384 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530663/657384.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530663/657384.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530663 657384 ERR3530664 760598 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530664 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530664 af2bd9946ee7f1b3c95f6b4d23a00e0d;f6c525b0323c2d076c2dd5a602aba39e 1313 105314861 590060ef9f52c35bed688d25890d6c84;e0cac279bc80e52b3272cb0cd48239cd SAMEA5785439 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530664/ERR3530664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530664/ERR3530664_2.fastq.gz 1136691 WGS 760598 RANDOM 76219927;78269616 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 201a6351c3adc31d9491042ef71a52ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530664/ERR3530664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530664/ERR3530664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530664/760598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530664/760598.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530664/ERR3530664_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530664/ERR3530664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530664/760598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530664/760598.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 73376699;75395254 ERS3755582 ERX3548559 GENOMIC 226863375 2019-09-19 760598 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530664/760598.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530664/760598.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530664 760598 ERR3530665 756626 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530665 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530665 e98afc6ad6ded6841da3d55054966807;c84c86e0c26aa317a3011f48efa90a85 1313 92323492 84b216fea3432fe9b12a5222d1c222e5;e69b1533fe960bda300ab5134ec5a8ec SAMEA5785651 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530665/ERR3530665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530665/ERR3530665_2.fastq.gz 998266 WGS 756626 RANDOM 67466169;68058391 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 22774903b63e290448365864cb90e818 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530665/ERR3530665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530665/ERR3530665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530665/756626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530665/756626.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530665/ERR3530665_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530665/ERR3530665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530665/756626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530665/756626.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 64961248;65532642 ERS3755794 ERX3548771 GENOMIC 198432365 2019-09-19 756626 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530665/756626.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530665/756626.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530665 756626 ERR3530666 308639 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530666 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530666 9c28d8b0436794e8ec50a2f5bd50eb02;b0d3c30db8acefc6da786c87e21c431a 1313 158251162 5ef7fbd84d779c0639a682c04771dea4;a73c1aa754c499dc64bdffdfeb283963 SAMEA5786155 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530666/ERR3530666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530666/ERR3530666_2.fastq.gz 1746424 WGS 308639 RANDOM 115527492;117094030 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dac2a4ee4f14304dea18d1030bd9565f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530666/ERR3530666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530666/ERR3530666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530666/308639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530666/308639.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530666/ERR3530666_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530666/ERR3530666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530666/308639.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530666/308639.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110922312;112469034 ERS3756297 ERX3549274 GENOMIC 346725938 2019-09-19 308639 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530666/308639.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530666/308639.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530666 308639 ERR3530722 753429 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530722 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530722 3b61629b5e7eea8e9429e38d0c33b5db;4f21fa8a42b2c6c8dc33675f43d364fc 1313 83094308 8e2a1f620e12795af8087a3daf425559;42f5f5fc41aec922bf3a5e669ac616aa SAMEA5785761 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530722/ERR3530722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530722/ERR3530722_2.fastq.gz 896411 WGS 753429 RANDOM 58380997;62540602 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 71a2fe391fa0c35af501517061534510 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530722/ERR3530722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530722/ERR3530722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530722/753429.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530722/753429.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530722/ERR3530722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530722/ERR3530722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530722/753429.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530722/753429.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56133339;60274703 ERS3755904 ERX3548881 GENOMIC 177433841 2019-09-19 753429 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530722/753429.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530722/753429.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530722 753429 ERR3530733 753460 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530733 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530733 56c711bdb00681d3bf20c3b0bd4b7994;b5a87f2b2c797adf0eb8fcfc9d057252 1313 80358657 47defeebf12e87340114472a75d90202;d750111ffc31c24a758452efce637d97 SAMEA5785730 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530733/ERR3530733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530733/ERR3530733_2.fastq.gz 888029 WGS 753460 RANDOM 58605479;59432853 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bf935950fc2b6863dc16acb61ca80d20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530733/ERR3530733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530733/ERR3530733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530733/753460.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530733/753460.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530733/ERR3530733_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530733/ERR3530733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530733/753460.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530733/753460.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56381539;57210680 ERS3755873 ERX3548850 GENOMIC 176011591 2019-09-19 753460 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530733/753460.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530733/753460.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530733 753460 ERR3530670 657385 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530670 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530670 8eaa13d20a266c07b24ac47f31f3968b;da8aee3e646c665cce81b5af4ac08488 1313 185031778 85e7681b0507e8bfb6f52e33c0364083;bc0ad6ff180d60bb69c7656049f03abd SAMEA5786088 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530670/ERR3530670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530670/ERR3530670_2.fastq.gz 2045237 WGS 657385 RANDOM 135270767;136305628 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5616689c4847c13e11f8198b88ee75b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530670/ERR3530670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530670/ERR3530670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530670/657385.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530670/657385.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530670/ERR3530670_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530670/ERR3530670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530670/657385.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530670/657385.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129956432;130988407 ERS3756230 ERX3549207 GENOMIC 402772032 2019-09-19 657385 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530670/657385.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530670/657385.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530670 657385 ERR3530669 311488 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530669 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530669 85c6aee92f1df270ee8dbc9ca32d650e;8c4c4342749c0b37a973272fca53656c 1313 160602394 84bad2b80acc8a34bdb92392f45e7f04;b4969fe5a9bd3aa1065bc0d91c79bea3 SAMEA5786136 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530669/ERR3530669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530669/ERR3530669_2.fastq.gz 1793406 WGS 311488 RANDOM 117127467;118115785 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6d0030047c1ab89e1e07a60a4b708f65 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530669/ERR3530669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530669/ERR3530669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530669/311488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530669/311488.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530669/ERR3530669_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530669/ERR3530669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530669/311488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530669/311488.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112273361;113263741 ERS3756278 ERX3549255 GENOMIC 352348912 2019-09-19 311488 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530669/311488.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530669/311488.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530669 311488 ERR3530737 753437 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530737 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530737 f9f8345975179be84c2bc61100e4921b;791ecb34042882c3708abe678b3bb4d3 1313 99229488 0d2749397872c98035cde392ad28eb21;19e2da6ef403a3b8811b6cd8c45fdba1 SAMEA5785753 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530737/ERR3530737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530737/ERR3530737_2.fastq.gz 1097323 WGS 753437 RANDOM 72731962;73103685 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 622afd680084ca78dba1902a823c8c86 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530737/ERR3530737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530737/ERR3530737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530737/753437.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530737/753437.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530737/ERR3530737_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530737/ERR3530737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530737/753437.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530737/753437.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 69942115;70313689 ERS3755896 ERX3548873 GENOMIC 218835692 2019-09-19 753437 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530737/753437.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530737/753437.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530737 753437 ERR3530742 753480 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530742 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530742 09684c45639d2e06f7f478a885461648;979a31fe06e8e8127f066ce908d92451 1313 95944052 6e7146f4509d66f3ae3c1405ac988fd7;69f61cdb49bd9059a9a3968dc4da3d9a SAMEA5785712 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530742/ERR3530742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530742/ERR3530742_2.fastq.gz 1044696 WGS 753480 RANDOM 68776949;71525227 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 600d0c1fd55b5cb96e72cffd75a33086 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530742/ERR3530742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530742/ERR3530742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530742/753480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530742/753480.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530742/ERR3530742_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530742/ERR3530742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530742/753480.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530742/753480.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66120668;68853623 ERS3755855 ERX3548832 GENOMIC 207668156 2019-09-19 753480 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530742/753480.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530742/753480.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530742 753480 ERR3530673 667370 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530673 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530673 90cfeedc7fa5304efc9fc6ba656a901a;f46c0a21e20a9943e21253205f376603 1313 99425373 1d24d016d3f132eded02f84bb188aff8;65378c9c07dfede2efd3cc1c68250fc2 SAMEA5786068 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530673/ERR3530673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530673/ERR3530673_2.fastq.gz 1051818 WGS 667370 RANDOM 70571618;73881034 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6b402ac93cbbe1d554df00df57f7d30b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530673/ERR3530673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530673/ERR3530673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530673/667370.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530673/667370.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530673/ERR3530673_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530673/ERR3530673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530673/667370.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530673/667370.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 67919106;71163696 ERS3756210 ERX3549187 GENOMIC 207072186 2019-09-19 667370 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530673/667370.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530673/667370.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530673 667370 ERR3530675 720981 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530675 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530675 d0d6b8850eb07c0cc7d7f6d5441c0f0c;4db195142c9fca5c3bcdab604a8f0e18 1313 320672609 7d417347c11ecb07754ffce83d94b76c;d1ea8014fb19a56cb7438234e6f66694 SAMEA5785827 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530675/ERR3530675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530675/ERR3530675_2.fastq.gz 3330505 WGS 720981 RANDOM 229461741;234060054 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 21611caebbc76bb08dcb8946b3244c16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530675/ERR3530675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530675/ERR3530675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530675/720981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530675/720981.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530675/ERR3530675_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530675/ERR3530675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530675/720981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530675/720981.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 220283046;224819272 ERS3755970 ERX3548947 GENOMIC 659800275 2019-09-19 720981 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530675/720981.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530675/720981.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530675 720981 ERR3530746 760588 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530746 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530746 9461f586a901788f304c40543fae3b33;1728f8c265f4c7db4b6e4f5b2758cd92 1313 135234839 5aa7b3a6dd982e5459233070121ef5a8;39232962c941245bcdc5fec8389855c2 SAMEA5785449 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530746/ERR3530746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530746/ERR3530746_2.fastq.gz 1454983 WGS 760588 RANDOM 97252083;100748741 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9ef430a1a13c949d66b6dfa12c970a39 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530746/ERR3530746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530746/ERR3530746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530746/760588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530746/760588.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530746/ERR3530746_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530746/ERR3530746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530746/760588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530746/760588.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93564166;97009412 ERS3755592 ERX3548569 GENOMIC 289963696 2019-09-19 760588 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530746/760588.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530746/760588.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530746 760588 ERR3530677 753453 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530677 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530677 998b34a312173257f513c3b2ce807e30;c4c3de18cf74e76a33cee8ce8315e984 1313 123692869 e9be41c35f380a870a5aa2aef134d5ae;d95c3358728fb89f7f326639f5f964f8 SAMEA5785737 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530677/ERR3530677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530677/ERR3530677_2.fastq.gz 1366840 WGS 753453 RANDOM 90212166;91342507 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fe3e3f3597c0665286f10e29ba61510a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530677/ERR3530677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530677/ERR3530677_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530677/753453.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530677/753453.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530677/ERR3530677_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530677/ERR3530677_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530677/753453.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530677/753453.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86725018;87854022 ERS3755880 ERX3548857 GENOMIC 272275727 2019-09-19 753453 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530677/753453.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530677/753453.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530677 753453 ERR3530678 757985 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530678 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530678 008d71d340b0294bc4946e6e1e1f3c13;4c8319ffd106743d9776c44ccc919703 1313 200681106 e00c02d5ff9fa0996602f939c10760b5;3340c12525ff7c3836fb2e4bad507bfe SAMEA5785545 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530678/ERR3530678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530678/ERR3530678_2.fastq.gz 2452456 WGS 757985 RANDOM 147716970;152744637 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 90b187e6a270da1da04a4615d9407bf5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530678/ERR3530678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530678/ERR3530678_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530678/757985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530678/757985.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530678/ERR3530678_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530678/ERR3530678_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530678/757985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530678/757985.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 141350711;146365220 ERS3755688 ERX3548665 GENOMIC 487207073 2019-09-19 757985 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530678/757985.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530678/757985.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530678 757985 ERR3530757 753440 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530757 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530757 044df9898ead1eb8eabb9427b0b506ad;9ed889e74ff4effe9b316470b9b75ef5 1313 78665320 68b410b1bd7b5601f195fb984c7996e1;06e6ef4f4c10aa90968872cbf14c923e SAMEA5785750 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530757/ERR3530757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530757/ERR3530757_2.fastq.gz 841313 WGS 753440 RANDOM 56561241;58178540 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d16d2b85fa4d04afbc8a04475eca1ba8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530757/ERR3530757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530757/ERR3530757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530757/753440.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530757/753440.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530757/ERR3530757_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530757/ERR3530757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530757/753440.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530757/753440.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 54461839;56068720 ERS3755893 ERX3548870 GENOMIC 167595234 2019-09-19 753440 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530757/753440.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530757/753440.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530757 753440 ERR3530679 757945 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530679 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530679 b10bc0ec43ee21303dbb7c8b6f347a7f;a5fe7dd55923e3e6c8d6639bf26c532f 1313 104748668 2e0a35f7738c0cf1565de673a3c3f652;f56d64441ec12dd425494a1690993718 SAMEA5785583 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530679/ERR3530679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530679/ERR3530679_2.fastq.gz 1267170 WGS 757945 RANDOM 76637084;80037614 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5d35f26658a2d990d4989c26aa299ec6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530679/ERR3530679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530679/ERR3530679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530679/757945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530679/757945.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530679/ERR3530679_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530679/ERR3530679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530679/757945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530679/757945.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 73408842;76811432 ERS3755726 ERX3548703 GENOMIC 251703202 2019-09-19 757945 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530679/757945.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530679/757945.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530679 757945 ERR3530680 757951 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530680 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530680 5960b363d0e7cdabb3116599715c2e43;255463b7195e2e724faf1a58d521c0d5 1313 52116282 e80843eaee3179aa1d403727a5231c2c;a680ed4dce51f22f10cf40c19e1e53ce SAMEA5785579 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530680/ERR3530680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530680/ERR3530680_2.fastq.gz 628577 WGS 757951 RANDOM 38320338;39684685 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ed203067d898e9a5b140de0e1a374564 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530680/ERR3530680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530680/ERR3530680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530680/757951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530680/757951.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530680/ERR3530680_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530680/ERR3530680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530680/757951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530680/757951.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 36727928;38096249 ERS3755722 ERX3548699 GENOMIC 123232526 2019-09-19 757951 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530680/757951.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530680/757951.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530680 757951 ERR3530681 308560 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530681 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530681 5fa6062035d491b9b98ff879aea76c45;f7d08df76ef4daab440410047a640fc1 1313 184402048 fe4326b577e2105131f0da4284611d36;f2e79683eac02f14677b2ffe30acea6c SAMEA5786227 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530681/ERR3530681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530681/ERR3530681_2.fastq.gz 2043913 WGS 308560 RANDOM 134327623;136268990 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 839efa290c667b1ac561d933a088ff28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530681/ERR3530681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530681/ERR3530681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530681/308560.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530681/308560.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530681/ERR3530681_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530681/ERR3530681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530681/308560.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530681/308560.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 128959811;130887739 ERS3756369 ERX3549346 GENOMIC 404359614 2019-09-19 308560 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530681/308560.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530681/308560.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530681 308560 ERR3530682 293064 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530682 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530682 06cb285573cf6c00d01d303df8ce73dc;382c622a9b575aa77b1d7b587f480388 1313 194421844 25a8480e78cc4498f930f3d68e6ec858;61d8bc17231a629f37c9cd9a7d52266f SAMEA5786299 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530682/ERR3530682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530682/ERR3530682_2.fastq.gz 2195043 WGS 293064 RANDOM 138586025;141218610 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ac610db3d038a760cef9516f29335121 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530682/ERR3530682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530682/ERR3530682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530682/293064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530682/293064.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530682/ERR3530682_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530682/ERR3530682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530682/293064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530682/293064.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 133080282;135675144 ERS3756441 ERX3549418 GENOMIC 430168267 2019-09-19 293064 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530682/293064.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530682/293064.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530682 293064 ERR3530683 720215 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530683 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530683 bb3fe2bf08eefe339431d5bc9ec3e778;1bdf4387b9ddec5d4ac42e20861b892b 1313 140498089 6d48a812e3536d2ddda1d6a111d105c6;8ba4d67c715406c6e9e0e74897ac34ed SAMEA5785920 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530683/ERR3530683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530683/ERR3530683_2.fastq.gz 1593111 WGS 720215 RANDOM 103453964;104068474 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e14cf26fa5ee5f386629b5e905b5a944 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530683/ERR3530683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530683/ERR3530683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530683/720215.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530683/720215.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530683/ERR3530683_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530683/ERR3530683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530683/720215.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530683/720215.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99226023;99840193 ERS3756062 ERX3549039 GENOMIC 316276186 2019-09-19 720215 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530683/720215.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530683/720215.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530683 720215 ERR3530684 759526 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530684 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530684 ce39155ea83883a3c755d5f811271ab7;c43b3d9e484ac9bfa5f552d68ffdcde0 1313 204005305 6787f450019c7b38d6a9135efc1fb992;069844bff60214047e504ee70039ed54 SAMEA5785481 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530684/ERR3530684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530684/ERR3530684_2.fastq.gz 2420965 WGS 759526 RANDOM 149536185;153584519 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0f3df2fbf56b4026e4781694a5a7abba ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530684/ERR3530684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530684/ERR3530684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530684/759526.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530684/759526.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530684/ERR3530684_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530684/ERR3530684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530684/759526.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530684/759526.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143302677;147331391 ERS3755624 ERX3548601 GENOMIC 481637275 2019-09-19 759526 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530684/759526.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530684/759526.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530684 759526 ERR3530685 304284 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530685 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530685 d3291a9d4a861e5dbc75d7d171984297;ad8c2911819cbe17c6d3617c197cba09 1313 137621134 318a52559afb642bc518fdc0d41ddc4e;628b1652b83f65db140df6236c96dfd6 SAMEA5786242 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530685/ERR3530685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530685/ERR3530685_2.fastq.gz 1589656 WGS 304284 RANDOM 101012063;102754134 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3cae49fee93713257ce1ee19133289f7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530685/ERR3530685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530685/ERR3530685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530685/304284.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530685/304284.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530685/ERR3530685_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530685/ERR3530685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530685/304284.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530685/304284.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 96878331;98614183 ERS3756384 ERX3549361 GENOMIC 315303710 2019-09-19 304284 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530685/304284.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530685/304284.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530685 304284 ERR3530686 757942 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530686 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530686 9903ec4f5a4d1e3792641086c1a3b8fc;3930f32e26700edc6e5e5596cd68f293 1313 180961254 e7f72bfee0973bf45c7b95c5e6c4eebb;df4e18d7af3b94eae40dc37a6dd1ff3d SAMEA5785586 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530686/ERR3530686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530686/ERR3530686_2.fastq.gz 2182280 WGS 757942 RANDOM 132098398;138119098 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5734976a4767a9cc1b2694eee236bcca ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530686/ERR3530686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530686/ERR3530686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530686/757942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530686/757942.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530686/ERR3530686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530686/ERR3530686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530686/757942.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530686/757942.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 126333525;132349756 ERS3755729 ERX3548706 GENOMIC 434346105 2019-09-19 757942 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530686/757942.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530686/757942.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530686 757942 ERR3530688 720996 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530688 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530688 f239d2448856d567e1aa73c25d6e8d34;82ee141bf70dfd465f054243056a3b36 1313 253149379 780c1862e50c546f31b0be0da3ee93d2;9cc13ed033051a922a6f6a4ee3ba7353 SAMEA5785813 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530688/ERR3530688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530688/ERR3530688_2.fastq.gz 2619706 WGS 720996 RANDOM 181068644;183660849 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ddc03de82e99e0eb82bb5e5e3d1a7efb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530688/ERR3530688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530688/ERR3530688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530688/720996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530688/720996.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530688/ERR3530688_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530688/ERR3530688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530688/720996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530688/720996.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 174373717;176921725 ERS3755956 ERX3548933 GENOMIC 519741999 2019-09-19 720996 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530688/720996.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530688/720996.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530688 720996 ERR3530690 300859 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530690 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530690 015b1cd675deed729172c145b0111bab;b1a5a256f66ec49691279bb913baa0cd 1313 128616719 821f9fb47244d24fcab810004e215443;80aa17cb57402b86d6886655e1b02f10 SAMEA5786281 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530690/ERR3530690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530690/ERR3530690_2.fastq.gz 1524375 WGS 300859 RANDOM 93373746;94865707 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8f320097e6ea142d9c5db3c478957bbd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530690/ERR3530690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530690/ERR3530690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530690/300859.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530690/300859.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530690/ERR3530690_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530690/ERR3530690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530690/300859.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530690/300859.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89594461;91057540 ERS3756423 ERX3549400 GENOMIC 301509665 2019-09-19 300859 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530690/300859.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530690/300859.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530690 300859 ERR3530689 720997 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530689 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530689 6f0adbefe21de93c283afb8c8561721c;10ecbd75d965b6069dc933c949653d89 1313 146693201 11529f7d9d357417d96367330c353c43;c9a7e2ea17dcb093f2be7538fd7046a0 SAMEA5785812 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530689/ERR3530689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530689/ERR3530689_2.fastq.gz 1514868 WGS 720997 RANDOM 105381810;106579691 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 10231e47fc56f4b4768050bb0faa31d2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530689/ERR3530689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530689/ERR3530689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530689/720997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530689/720997.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530689/ERR3530689_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530689/ERR3530689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530689/720997.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530689/720997.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101472634;102627679 ERS3755955 ERX3548932 GENOMIC 300958677 2019-09-19 720997 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530689/720997.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530689/720997.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530689 720997 ERR3530687 717880 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530687 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530687 87dda73323f98bf0854894d924885e60;884b7709f4b44d4dab1820b218d4ee46 1313 168238340 3b4f2c7aabdd89d98d6a63a12ba1ae49;fe65de52beb9146a21eaddbf0014eda6 SAMEA5786033 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530687/ERR3530687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530687/ERR3530687_2.fastq.gz 2034239 WGS 717880 RANDOM 125819181;125961036 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 04ff686cb435526c0290d272cd4e61fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530687/ERR3530687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530687/ERR3530687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530687/717880.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530687/717880.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530687/ERR3530687_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530687/ERR3530687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530687/717880.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530687/717880.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120402099;120532986 ERS3756175 ERX3549152 GENOMIC 403266901 2019-09-19 717880 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530687/717880.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530687/717880.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530687 717880 ERR3530762 759511 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530762 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530762 45132a30b264bcfbfbe15f3751523bd8;7f786a6756bc72c2e0bdc4f85f7fe151 1313 160389817 4d389b64617b4b63c1dc987f11cdae8c;c79e43db7670fcf3ed9ec32561b942d2 SAMEA5785496 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530762/ERR3530762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530762/ERR3530762_2.fastq.gz 1892033 WGS 759511 RANDOM 117875788;121222211 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b121fa026089fb841cff827b2fddf4f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530762/ERR3530762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530762/ERR3530762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530762/759511.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530762/759511.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530762/ERR3530762_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530762/ERR3530762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530762/759511.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530762/759511.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112829913;116166282 ERS3755639 ERX3548616 GENOMIC 377349697 2019-09-19 759511 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530762/759511.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530762/759511.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530762 759511 ERR3530693 753416 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530693 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530693 6c6b078f1ae1e94a2641c1e9279350e0;05cd7bc87b2cae5c43b7a0e486ba654e 1313 110395643 e3f54f93b756b7079a80e3f6bddddc52;a1b900f3568b283fc39464f05c233386 SAMEA5785774 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530693/ERR3530693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530693/ERR3530693_2.fastq.gz 1199062 WGS 753416 RANDOM 79011834;82192561 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2b13c3a6878e93f46b7d3f550c749a72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530693/ERR3530693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530693/ERR3530693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530693/753416.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530693/753416.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530693/ERR3530693_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530693/ERR3530693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530693/753416.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530693/753416.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75955865;79122928 ERS3755917 ERX3548894 GENOMIC 237998436 2019-09-19 753416 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530693/753416.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530693/753416.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530693 753416 ERR3530695 757995 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530695 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530695 256a5c26443e1031bf6ec61f233b13cf;4f3bcc570049b65be9782ee02629f116 1313 151106591 53a4dfe102ed796da0edeab1c4fbdcab;5d95b279609dc6bbbdceb5c92fc1b575 SAMEA5785535 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530695/ERR3530695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530695/ERR3530695_2.fastq.gz 1829556 WGS 757995 RANDOM 111042047;115506286 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e8d4a194b90253c08d619331ab1b2aa8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530695/ERR3530695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530695/ERR3530695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530695/757995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530695/757995.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530695/ERR3530695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530695/ERR3530695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530695/757995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530695/757995.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106123188;110589560 ERS3755678 ERX3548655 GENOMIC 363469502 2019-09-19 757995 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530695/757995.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530695/757995.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530695 757995 ERR3530791 756677 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530791 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530791 67268f469e727c0529f7231fc37c198d;139c2ea0ef9f862811aacccad98adf24 1313 103424547 2c135976305ec70f2c2b6bd6f28e55c4;97c53406b0be09f397f3457974602777 SAMEA5785601 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530791/ERR3530791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530791/ERR3530791_2.fastq.gz 1105347 WGS 756677 RANDOM 74380251;76687184 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c0ae50a72c148fcd623d6a1027549351 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530791/ERR3530791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530791/ERR3530791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530791/756677.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530791/756677.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530791/ERR3530791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530791/ERR3530791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530791/756677.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530791/756677.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71615020;73878289 ERS3755744 ERX3548721 GENOMIC 219774848 2019-09-19 756677 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530791/756677.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530791/756677.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530791 756677 ERR3530692 717856 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530692 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530692 0ac4439bc0d94e619ceebb9f5aafdd46;3fc2e004b063b1593c47c07ba6e1eb1d 1313 114008298 5d77bf6569c55f6b00ce7ecd6200a98b;9077067a2159e8decfcee5def71a0b8b SAMEA5786042 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530692/ERR3530692_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530692/ERR3530692_2.fastq.gz 1328726 WGS 717856 RANDOM 82006540;87093544 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2a5ffd34daab47bd2e3fb5aa8c075c73 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530692/ERR3530692_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530692/ERR3530692_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530692/717856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530692/717856.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530692/ERR3530692_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530692/ERR3530692_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530692/717856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530692/717856.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78643624;83721213 ERS3756184 ERX3549161 GENOMIC 264647753 2019-09-19 717856 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530692/717856.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530692/717856.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530692 717856 ERR3530696 717979 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530696 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530696 e045e28e74bc7a3d4d65d155040caff4;fc450d3e9f325e8ebe4c14b83788c848 1313 117378230 39f1d2e5e624bd56e11abb789459b713;e0455d404758e4afdc416fb7a1fce936 SAMEA5785962 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530696/ERR3530696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530696/ERR3530696_2.fastq.gz 1355925 WGS 717979 RANDOM 85826750;87857307 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 765acc7c76f086984ce66834c6aca540 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530696/ERR3530696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530696/ERR3530696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530696/717979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530696/717979.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530696/ERR3530696_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530696/ERR3530696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530696/717979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530696/717979.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82332005;84354275 ERS3756104 ERX3549081 GENOMIC 268363398 2019-09-19 717979 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530696/717979.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530696/717979.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530696 717979 ERR3530697 717973 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530697 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530697 ff01fe5bbca84747a5cc4c05754cd820;5e1a601b7f8937f9b760e6a1febb1a98 1313 146215181 69f30befb198115fe82f7578ab37f912;4cc387238bfa5274ad430075add6deaf SAMEA5785968 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530697/ERR3530697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530697/ERR3530697_2.fastq.gz 1693459 WGS 717973 RANDOM 106927176;109964864 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. da499733d775bb94517fe89f8e2b5858 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530697/ERR3530697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530697/ERR3530697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530697/717973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530697/717973.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530697/ERR3530697_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530697/ERR3530697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530697/717973.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530697/717973.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102399223;105426969 ERS3756110 ERX3549087 GENOMIC 335956047 2019-09-19 717973 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530697/717973.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530697/717973.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530697 717973 ERR3530700 304269 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530700 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530700 8d3ae1fab8b6e4081417e4d3e1e26c9e;8fc78bc53729ffd12ae5f68cc47ddb20 1313 177550272 0249414d82cdf0e48a14d08a233cda88;5b99bef232b71a3a5e43e76f126ec392 SAMEA5786255 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530700/ERR3530700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530700/ERR3530700_2.fastq.gz 2066446 WGS 304269 RANDOM 130685917;132119513 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 78f7cefc12135647680f5961d79e3053 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530700/ERR3530700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530700/ERR3530700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530700/304269.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530700/304269.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530700/ERR3530700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530700/ERR3530700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530700/304269.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530700/304269.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125284223;126696094 ERS3756397 ERX3549374 GENOMIC 409111079 2019-09-19 304269 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530700/304269.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530700/304269.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530700 304269 ERR3530698 758024 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530698 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530698 d45b417c05d75651aff0d95b31f20273;6f748374a2c1f88e3301ed679a32c2b3 1313 132060083 8bb56c3f80efbcacc06d0c0ff9d4c57d;91d2c1fa01a0c1ba39de24a9cffd3f89 SAMEA5785507 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530698/ERR3530698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530698/ERR3530698_2.fastq.gz 1585538 WGS 758024 RANDOM 96654199;100630837 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 03609f394c09e72220735d49de5f8352 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530698/ERR3530698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530698/ERR3530698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530698/758024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530698/758024.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530698/ERR3530698_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530698/ERR3530698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530698/758024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530698/758024.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92497856;96464443 ERS3755650 ERX3548627 GENOMIC 314303364 2019-09-19 758024 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530698/758024.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530698/758024.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530698 758024 ERR3530699 720196 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530699 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530699 57de56bde6c723e2f46d0afa40502719;3805965fad381e6fc790379b3988351f 1313 212098749 77db41058eaf726e62bc2b6f1b7d0342;12ae404c91885f937b59cbb7e7b2452d SAMEA5785939 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530699/ERR3530699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530699/ERR3530699_2.fastq.gz 2387410 WGS 720196 RANDOM 154566774;155947900 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 90925581a89421133e4b7edb374cbd9d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530699/ERR3530699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530699/ERR3530699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530699/720196.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530699/720196.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530699/ERR3530699_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530699/ERR3530699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530699/720196.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530699/720196.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 148346503;149720791 ERS3756081 ERX3549058 GENOMIC 468664067 2019-09-19 720196 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530699/720196.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530699/720196.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530699 720196 ERR3530701 308569 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530701 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530701 86c6fc85ff05ce69973e9d3282c89825;196f246f1e2503341c464c1ddb9a90bb 1313 150106352 c40c7482b07148e20840ca7f5cf2f9df;95710dd087f1b41934ac0843bb936d86 SAMEA5786218 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530701/ERR3530701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530701/ERR3530701_2.fastq.gz 1657979 WGS 308569 RANDOM 109468289;111109373 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c3956a56cd5d06f7cbebc8994c87ecbe ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530701/ERR3530701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530701/ERR3530701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530701/308569.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530701/308569.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530701/ERR3530701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530701/ERR3530701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530701/308569.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530701/308569.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105119904;106739888 ERS3756360 ERX3549337 GENOMIC 328033712 2019-09-19 308569 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530701/308569.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530701/308569.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530701 308569 ERR3530702 757996 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530702 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530702 10cd202a6f8662b6795358bb7b8cdb39;df2b7ef938fc83d550e079f1b7b1c527 1313 163545671 5d01cc944a021bc75e97f930ca5896c8;7c9f370bcb8e3491fc241bd73cfc7e10 SAMEA5785534 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530702/ERR3530702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530702/ERR3530702_2.fastq.gz 1950010 WGS 757996 RANDOM 119057884;125268357 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ff0a0e63fc5daa6fd047bf593237b58c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530702/ERR3530702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530702/ERR3530702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530702/757996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530702/757996.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530702/ERR3530702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530702/ERR3530702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530702/757996.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530702/757996.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113833131;120047625 ERS3755677 ERX3548654 GENOMIC 388667717 2019-09-19 757996 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530702/757996.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530702/757996.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530702 757996 ERR3530703 731074 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530703 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530703 00a1331868bc96bb1e786bdd902ac2f1;054adc9097429b50024a20e18c71034f 1313 173824632 affdb6402859b2a9509e8a5db17c8255;5a0649bbc6eb57378670a8aeac60d017 SAMEA5785779 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530703/ERR3530703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530703/ERR3530703_2.fastq.gz 1857439 WGS 731074 RANDOM 125246181;128665876 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2712f8f128df12cfa9990271b3b94059 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530703/ERR3530703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530703/ERR3530703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530703/731074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530703/731074.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530703/ERR3530703_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530703/ERR3530703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530703/731074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530703/731074.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120395222;123780201 ERS3755922 ERX3548899 GENOMIC 370630525 2019-09-19 731074 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530703/731074.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530703/731074.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530703 731074 ERR3530704 758017 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530704 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530704 991802d0eb06e473fba7202fe6fbcd2e;2e00ce5adf83c61a3352d255df4c4fc9 1313 112128822 e543373852ad846a400fcaec1a84541a;6f5a3ab2490181306b4018437dd7ff02 SAMEA5785514 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530704/ERR3530704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530704/ERR3530704_2.fastq.gz 1367867 WGS 758017 RANDOM 82690019;85178220 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7dbca1005c22e4c57abf7295c16404ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530704/ERR3530704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530704/ERR3530704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530704/758017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530704/758017.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530704/ERR3530704_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530704/ERR3530704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530704/758017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530704/758017.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79197878;81676569 ERS3755657 ERX3548634 GENOMIC 270111668 2019-09-19 758017 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530704/758017.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530704/758017.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530704 758017 ERR3530705 720199 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530705 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530705 5021e86efa7843192ce554a305c8802c;ece47ded0b8ec49a1416b965f36a323d 1313 86283925 fac67d7a45cc557ab896126d789e12db;9bfb1f308f8e20a814b4e1871cd99a5f SAMEA5785936 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530705/ERR3530705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530705/ERR3530705_2.fastq.gz 948290 WGS 720199 RANDOM 61282358;64934673 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9f3fe119772a8ed80b9df3850901a9cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530705/ERR3530705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530705/ERR3530705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530705/720199.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530705/720199.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530705/ERR3530705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530705/ERR3530705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530705/720199.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530705/720199.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 58880019;62508465 ERS3756078 ERX3549055 GENOMIC 187789254 2019-09-19 720199 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530705/720199.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530705/720199.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530705 720199 ERR3530706 318632 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530706 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530706 27bf3c6115a23eff860911877a74ea9f;4cf66b4522e6825332a27a9d3680368c 1313 222078415 c5ef952b4680e9cc91b0ca8f7a991b10;9552f878c8ee22c52d63ab6e8dcabb61 SAMEA5786127 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530706/ERR3530706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530706/ERR3530706_2.fastq.gz 2316137 WGS 318632 RANDOM 157525918;161507613 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 868b18c97a1682bb9ed0d13f415adeb0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530706/ERR3530706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530706/ERR3530706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530706/318632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530706/318632.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530706/ERR3530706_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530706/ERR3530706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530706/318632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530706/318632.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 151506874;155468399 ERS3756269 ERX3549246 GENOMIC 453240494 2019-09-19 318632 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530706/318632.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530706/318632.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530706 318632 ERR3530707 717834 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530707 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530707 3f1ad59445f1839ebe27bbbc69db4b2d;a7dd15ad0f338d44b03ff417aa83bcdb 1313 126299377 9c4a69b1104fa0cdd97f4161ca2f4fe1;7e980ddc213e59f8c52bda018f8cc660 SAMEA5786050 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530707/ERR3530707_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530707/ERR3530707_2.fastq.gz 1458511 WGS 717834 RANDOM 91211476;95965850 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fcf7418a4eeab5a9b1331f04cec96937 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530707/ERR3530707_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530707/ERR3530707_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530707/717834.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530707/717834.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530707/ERR3530707_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530707/ERR3530707_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530707/717834.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530707/717834.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87427798;92158523 ERS3756192 ERX3549169 GENOMIC 290915297 2019-09-19 717834 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530707/717834.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530707/717834.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530707 717834 ERR3530795 756630 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530795 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530795 d39383f2483c0a35963b7bdcba04a35b;23d60bc960aa2dd6186f44c36c9578a8 1313 202843494 6a3de4189948d84f10cf3a4e57c13c16;4ac5b7da2a8c06eca25fc9b9b56dbaf6 SAMEA5785647 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530795/ERR3530795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530795/ERR3530795_2.fastq.gz 2208624 WGS 756630 RANDOM 148029202;149242090 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6d5f18771c0d5bc45b9879b3eb008615 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530795/ERR3530795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530795/ERR3530795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530795/756630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530795/756630.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530795/ERR3530795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530795/ERR3530795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530795/756630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530795/756630.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 142354941;143551532 ERS3755790 ERX3548767 GENOMIC 439849669 2019-09-19 756630 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530795/756630.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530795/756630.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530795 756630 ERR3530710 756627 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530710 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530710 028c0aa8be00b2b1b80409cfbc8cdbeb;35751f01d16e5f3b4c1a750d354783e6 1313 192114041 186e4589580b2952bb8c2153dea3d676;8e82b672fb1d7798cebe46cc4d057640 SAMEA5785650 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530710/ERR3530710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530710/ERR3530710_2.fastq.gz 2096654 WGS 756627 RANDOM 140229375;141590425 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bdb8edfb6528534e58fc1cd32e611ff3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530710/ERR3530710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530710/ERR3530710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530710/756627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530710/756627.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530710/ERR3530710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530710/ERR3530710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530710/756627.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530710/756627.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 134757314;136099335 ERS3755793 ERX3548770 GENOMIC 417255123 2019-09-19 756627 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530710/756627.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530710/756627.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530710 756627 ERR3530709 720230 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530709 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530709 fbf4ac709e3de87b61ab13d0840da47b;b75103d8f8e23e82bcb83fd83af4d4db 1313 84728558 e48958a12910ad8c3bc00e345e19053c;dbec506267648443666a4bfe8e15c118 SAMEA5785904 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530709/ERR3530709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530709/ERR3530709_2.fastq.gz 957704 WGS 720230 RANDOM 62231722;62794570 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 41b1cd4c5c9f43d3e8d8e8eb88a31667 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530709/ERR3530709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530709/ERR3530709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530709/720230.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530709/720230.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530709/ERR3530709_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530709/ERR3530709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530709/720230.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530709/720230.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 59777252;60333365 ERS3756047 ERX3549024 GENOMIC 189925172 2019-09-19 720230 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530709/720230.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530709/720230.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530709 720230 ERR3530711 756674 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530711 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530711 9b683f5e6beb4350220484c8699abccd;2d7855f7eb0b10af581ed647c08c40f7 1313 191519569 30d769b5e43df9867c6f0e88023eb48d;4a68bfc64391200305ae730691e63f52 SAMEA5785604 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530711/ERR3530711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530711/ERR3530711_2.fastq.gz 2081066 WGS 756674 RANDOM 139002336;141648754 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fa0ab8038b9770b2477c5ff51b422d33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530711/ERR3530711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530711/ERR3530711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530711/756674.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530711/756674.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530711/ERR3530711_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530711/ERR3530711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530711/756674.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530711/756674.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 133590184;136204450 ERS3755747 ERX3548724 GENOMIC 414350319 2019-09-19 756674 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530711/756674.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530711/756674.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530711 756674 ERR3530712 721009 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530712 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530712 9bada6a1713243ef8a12a14e5e5544f8;5a85b5552c6942521f7f504212fbf36a 1313 267329415 9b4107aeea9a5b6c5d69564dfe5d9fe2;29f9f9585d60add9723b5bc98fbd6181 SAMEA5785800 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530712/ERR3530712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530712/ERR3530712_2.fastq.gz 2783408 WGS 721009 RANDOM 190964100;194544273 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 928a89246f896a70f1d3693ae16dcd30 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530712/ERR3530712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530712/ERR3530712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530712/721009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530712/721009.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530712/ERR3530712_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530712/ERR3530712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530712/721009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530712/721009.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 183733798;187267338 ERS3755943 ERX3548920 GENOMIC 549881552 2019-09-19 721009 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530712/721009.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530712/721009.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530712 721009 ERR3530713 753427 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530713 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530713 b89e3f90c5a8ef0b20258e01966939c2;1f7d4cff3b4c485b0d142abb05a0fcaf 1313 88718666 5b3ee06345e82f81f94098d108d308a9;c0929f1f467a207385681161cbf7a20a SAMEA5785763 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530713/ERR3530713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530713/ERR3530713_2.fastq.gz 964705 WGS 753427 RANDOM 63726479;65858632 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5404f9d8dc4f04824fbb0bbf8507c99e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530713/ERR3530713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530713/ERR3530713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530713/753427.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530713/753427.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530713/ERR3530713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530713/ERR3530713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530713/753427.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530713/753427.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 61277775;63403695 ERS3755906 ERX3548883 GENOMIC 190931080 2019-09-19 753427 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530713/753427.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530713/753427.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530713 753427 ERR3530714 758020 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530714 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530714 9efe2cbc0633dc891dae448c299e3eb3;3d202ba7d53b73d6c21f8f7c36bc960e 1313 100749507 7832ceb0fa3e154043114aa18535710e;b5327c15605e636964a286a0a6ff33f1 SAMEA5785511 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530714/ERR3530714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530714/ERR3530714_2.fastq.gz 1204800 WGS 758020 RANDOM 73495301;76685964 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6cbe2b2db0527afb9e52c6914067ad27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530714/ERR3530714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530714/ERR3530714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530714/758020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530714/758020.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530714/ERR3530714_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530714/ERR3530714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530714/758020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530714/758020.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70436295;73619662 ERS3755654 ERX3548631 GENOMIC 237625299 2019-09-19 758020 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530714/758020.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530714/758020.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530714 758020 ERR3530715 731073 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530715 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530715 828d295b69083b7b64e37f5fd83820d5;a3220264ebcec29c8303fe9662e34ba0 1313 221649393 e7dc539467c0e45b75ddf3edb5a1269f;4908f5c2366a44ecfe8d583877e985ef SAMEA5785780 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530715/ERR3530715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530715/ERR3530715_2.fastq.gz 2373073 WGS 731073 RANDOM 159943135;163215307 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9ed9687bf0b5807e5d545c88a1a6401 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530715/ERR3530715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530715/ERR3530715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530715/731073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530715/731073.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530715/ERR3530715_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530715/ERR3530715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530715/731073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530715/731073.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 153912874;157151384 ERS3755923 ERX3548900 GENOMIC 473461314 2019-09-19 731073 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530715/731073.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530715/731073.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530715 731073 ERR3530716 720186 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530716 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530716 6fb19cb86bf914db110f522657fc26dd;fdb328220a1f8eba0ee196c9b3e7c0ce 1313 87819079 75c9fddb1c0500c30ee129f572485621;c571c9dfbecd3610a7a70dc41558043a SAMEA5785949 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530716/ERR3530716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530716/ERR3530716_2.fastq.gz 973393 WGS 720186 RANDOM 62509201;65854377 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8e7d6fe161c672699e45193b2a99a5a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530716/ERR3530716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530716/ERR3530716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530716/720186.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530716/720186.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530716/ERR3530716_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530716/ERR3530716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530716/720186.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530716/720186.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60023387;63356514 ERS3756091 ERX3549068 GENOMIC 189614207 2019-09-19 720186 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530716/720186.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530716/720186.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530716 720186 ERR3530717 756663 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530717 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530717 a7215cbd0fbc2b78115e5e82dddbfb75;ff8037fcbb36be87d0a917a4f02c0f90 1313 162979791 2d210e0e7916c39da9ba56090b348fa9;7d15315121fd01d9028a21223147be84 SAMEA5785615 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530717/ERR3530717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530717/ERR3530717_2.fastq.gz 1762097 WGS 756663 RANDOM 118660102;120214112 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f0259581a606c89a5b668f42c67590c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530717/ERR3530717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530717/ERR3530717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530717/756663.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530717/756663.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530717/ERR3530717_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530717/ERR3530717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530717/756663.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530717/756663.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114008293;115530045 ERS3755758 ERX3548735 GENOMIC 351268891 2019-09-19 756663 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530717/756663.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530717/756663.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530717 756663 ERR3530718 717988 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530718 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530718 7133d225af617d090023ac0fa3503860;2a09e03766c77016442d6e178ff1c321 1313 165823699 e1e0101e28f2b8d165b4a9e2a9b312c4;d718cc0727afe6211e79829734bdf6a0 SAMEA5785956 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530718/ERR3530718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530718/ERR3530718_2.fastq.gz 1929509 WGS 717988 RANDOM 121705062;123290578 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7bf73f435a6d21da47ab884d4ca571e1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530718/ERR3530718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530718/ERR3530718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530718/717988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530718/717988.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530718/ERR3530718_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530718/ERR3530718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530718/717988.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530718/717988.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116544960;118114489 ERS3756098 ERX3549075 GENOMIC 381261042 2019-09-19 717988 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530718/717988.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530718/717988.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530718 717988 ERR3530719 760592 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530719 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530719 63be1f64f6af01538ed6358ec5daa803;2d1e38be47e41f9db2c03f9d2187ec94 1313 137062115 234247acfd366c9fadd803d9a3774ec0;bcf230a5babbf7cc7bc2c34dba770e71 SAMEA5785445 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530719/ERR3530719_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530719/ERR3530719_2.fastq.gz 1473386 WGS 760592 RANDOM 98385827;102211489 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e6226a8d71b5472b9834cb2d284671c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530719/ERR3530719_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530719/ERR3530719_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530719/760592.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530719/760592.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530719/ERR3530719_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530719/ERR3530719_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530719/760592.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530719/760592.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94668659;98441591 ERS3755588 ERX3548565 GENOMIC 293903176 2019-09-19 760592 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530719/760592.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530719/760592.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530719 760592 ERR3530720 720982 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530720 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530720 bae8db9b6de90d5044aacd7d8d04f5e0;93d6c3d6f4faec21d31f736aeab27a04 1313 168885345 f5c923ec33e06d82b440166989192792;5cb23665e6a65131b8ca011f4cec64b1 SAMEA5785826 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530720/ERR3530720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530720/ERR3530720_2.fastq.gz 1748842 WGS 720982 RANDOM 120723649;123189097 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f3c7a6e64d62168e0f5896a720ad4a99 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530720/ERR3530720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530720/ERR3530720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530720/720982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530720/720982.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530720/ERR3530720_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530720/ERR3530720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530720/720982.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530720/720982.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116077210;118497546 ERS3755969 ERX3548946 GENOMIC 344144475 2019-09-19 720982 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530720/720982.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530720/720982.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530720 720982 ERR3530721 717896 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530721 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530721 9e78e4495eee716ff0afd3db1c666d2b;938cb0d8556a914db26ad8350dee6ad9 1313 156147945 762fccb5ee5cb9a872fb9e9da7f54336;1923e305d852571d745d744c4fd73a3a SAMEA5786025 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530721/ERR3530721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530721/ERR3530721_2.fastq.gz 1871226 WGS 717896 RANDOM 115937338;117433147 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 355509806337dd247a4cd1477eff605e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530721/ERR3530721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530721/ERR3530721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530721/717896.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530721/717896.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530721/ERR3530721_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530721/ERR3530721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530721/717896.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530721/717896.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110930409;112419958 ERS3756167 ERX3549144 GENOMIC 371914958 2019-09-19 717896 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530721/717896.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530721/717896.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530721 717896 ERR3530813 759533 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530813 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530813 6702f95faedc1ae8c426735240eee7fd;c196c261774320af163a91975585dce6 1313 167962842 84633e821c771431a80acb6cebe9dbcd;3ed833bcd3ec03f44eece7ad03e9bbe1 SAMEA5785474 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530813/ERR3530813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530813/ERR3530813_2.fastq.gz 1964593 WGS 759533 RANDOM 122123578;127350379 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4d0710d9d9043abd3230cd3636babdc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530813/ERR3530813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530813/ERR3530813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530813/759533.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530813/759533.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530813/ERR3530813_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530813/ERR3530813_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530813/759533.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530813/759533.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116881760;122101067 ERS3755617 ERX3548594 GENOMIC 390946618 2019-09-19 759533 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530813/759533.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530813/759533.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530813 759533 ERR3530723 308576 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530723 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530723 c50763242c39ea68144c23d8eb4647cf;43638991f28d67e40bdc844fd23e0aa1 1313 151579856 7786ffaee53a1641257a613859249b33;c76371281ad05d4aa76a1707fbdfb362 SAMEA5786211 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530723/ERR3530723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530723/ERR3530723_2.fastq.gz 1660672 WGS 308576 RANDOM 110040309;112190562 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fbd5a971e11ec994cf4239a4b6bb3c4d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530723/ERR3530723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530723/ERR3530723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530723/308576.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530723/308576.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530723/ERR3530723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530723/ERR3530723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530723/308576.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530723/308576.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105683423;107809751 ERS3756353 ERX3549330 GENOMIC 328748309 2019-09-19 308576 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530723/308576.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530723/308576.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530723 308576 ERR3530724 717970 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530724 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530724 0f95e23dd26695e33f199f8c86e9845f;2e02528e20902014fd3703911e8092c4 1313 145877469 1237466010a7d0aa5de723780f9fb5e8;33a170aac065c1a82d909a4b617fd5e1 SAMEA5785971 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530724/ERR3530724_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530724/ERR3530724_2.fastq.gz 1726845 WGS 717970 RANDOM 107870225;110015230 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4e7695b1c624ebdba2f844e725997090 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530724/ERR3530724_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530724/ERR3530724_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530724/717970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530724/717970.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530724/ERR3530724_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530724/ERR3530724_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530724/717970.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530724/717970.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 103237359;105381189 ERS3756113 ERX3549090 GENOMIC 343869962 2019-09-19 717970 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530724/717970.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530724/717970.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530724 717970 ERR3530725 720968 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530725 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530725 f2a60899572c176538a09b7b17ff52e8;a03327de0b284f30871525f8cfe18afd 1313 185460199 eb2dfaad2e5c465c0f43545a27bbb87d;d0287eabb62c5aa0533f8303eb7de41e SAMEA5785840 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530725/ERR3530725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530725/ERR3530725_2.fastq.gz 1919819 WGS 720968 RANDOM 132862776;135024821 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eb9290140c07e906c735bef8578017bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530725/ERR3530725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530725/ERR3530725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530725/720968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530725/720968.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530725/ERR3530725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530725/ERR3530725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530725/720968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530725/720968.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127861465;129979820 ERS3755983 ERX3548960 GENOMIC 380615450 2019-09-19 720968 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530725/720968.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530725/720968.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530725 720968 ERR3530726 311473 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530726 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530726 ae1011fa3be9c7ef3a5cc824cdcf74b0;03e5ab366f9aa457836b23837751047e 1313 238942667 a0298e6e615b5d31e614789c6bfe0e8c;ea988bf790790b091fee999c39cd9d37 SAMEA5786151 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530726/ERR3530726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530726/ERR3530726_2.fastq.gz 2685574 WGS 311473 RANDOM 173675655;175882353 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8d792fa225aa44e2cc2a0626e70e923f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530726/ERR3530726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530726/ERR3530726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530726/311473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530726/311473.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530726/ERR3530726_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530726/ERR3530726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530726/311473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530726/311473.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 166597376;168821284 ERS3756293 ERX3549270 GENOMIC 530821894 2019-09-19 311473 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530726/311473.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530726/311473.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530726 311473 ERR3530727 717930 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530727 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530727 ad3302916b821ada4236519219f9e011;0f40e3ef12b0b677c2d3e6f8ee6cd2b6 1313 106034304 4a1cb507f2baad954e0aaae089907f0c;8c12eacb6a1e8fc3938493d36c424ba5 SAMEA5786008 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530727/ERR3530727_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530727/ERR3530727_2.fastq.gz 1247569 WGS 717930 RANDOM 77854540;80190889 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b470cf47b5e314476f11799d144f9980 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530727/ERR3530727_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530727/ERR3530727_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530727/717930.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530727/717930.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530727/ERR3530727_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530727/ERR3530727_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530727/717930.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530727/717930.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74697794;77018873 ERS3756150 ERX3549127 GENOMIC 249066893 2019-09-19 717930 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530727/717930.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530727/717930.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530727 717930 ERR3530728 717960 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530728 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530728 023807a804b61d8745b5547debdd8321;3ea6db56b9a14c815ab3f2f7f71d8d27 1313 128315474 3bd1d3b64dbd458372a99db1bcac5a44;b30d2c459d1a290074d3c5c7036bf118 SAMEA5785980 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530728/ERR3530728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530728/ERR3530728_2.fastq.gz 1520309 WGS 717960 RANDOM 94650591;96995057 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 169a5563b2e4a62fdf1e8d161a5dea3e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530728/ERR3530728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530728/ERR3530728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530728/717960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530728/717960.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530728/ERR3530728_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530728/ERR3530728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530728/717960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530728/717960.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90666773;93001780 ERS3756122 ERX3549099 GENOMIC 303431758 2019-09-19 717960 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530728/717960.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530728/717960.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530728 717960 ERR3530729 753442 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530729 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530729 c71240dd78ec5c3b7c1c737c1ce3ac96;1af31adc0034bfe92eab462ca5410de7 1313 104584689 cd29b6b7b2a5c7fe97b719cc85b4460a;5486d6bb2c31fdfb6f2e33ed59a823da SAMEA5785748 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530729/ERR3530729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530729/ERR3530729_2.fastq.gz 1170017 WGS 753442 RANDOM 77142995;76636551 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. acd9722670618c5a3598940c1ce999c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530729/ERR3530729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530729/ERR3530729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530729/753442.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530729/753442.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530729/ERR3530729_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530729/ERR3530729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530729/753442.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530729/753442.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 74197217;73705384 ERS3755891 ERX3548868 GENOMIC 231852927 2019-09-19 753442 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530729/753442.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530729/753442.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530729 753442 ERR3530730 300856 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530730 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530730 98db00b1390033528e32fc0f5b12289d;1786a5fac6f1899b17d845d82a330d5f 1313 59759185 1ec875e7bb8c182c8b1fc8b74f91b3a5;cd21e80495d40c50a8fd4610dd16e168 SAMEA5786284 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530730/ERR3530730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530730/ERR3530730_2.fastq.gz 695395 WGS 300856 RANDOM 42769449;44500493 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c23e2c773255d3c2052db7e56e49045 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530730/ERR3530730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530730/ERR3530730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530730/300856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530730/300856.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530730/ERR3530730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530730/ERR3530730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530730/300856.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530730/300856.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 41113489;42806200 ERS3756426 ERX3549403 GENOMIC 136812464 2019-09-19 300856 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530730/300856.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530730/300856.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530730 300856 ERR3530731 311475 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530731 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530731 9580b2d0da5c867ab8af96759d31b306;14adf18072adbd237bfc0e4439348aa1 1313 301817696 49beda05f2408d35ae08638008f234c0;072a50a096329fb17aacd1ecea611167 SAMEA5786149 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530731/ERR3530731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530731/ERR3530731_2.fastq.gz 3398358 WGS 311475 RANDOM 220403337;222069814 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 701ebe796431bff5a598e536c8997d48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530731/ERR3530731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530731/ERR3530731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530731/311475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530731/311475.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530731/ERR3530731_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530731/ERR3530731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530731/311475.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530731/311475.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 210801052;212489782 ERS3756291 ERX3549268 GENOMIC 670061122 2019-09-19 311475 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530731/311475.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530731/311475.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530731 311475 ERR3530732 756662 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530732 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530732 8a2ae1ddd95d45d8f5d77e8bca66f0e7;07ab636219a5132f33c37f42e98dc6a6 1313 121355633 f18d07e1a87912e45d1f03b9ea8a639d;e3cba473ed3a7b0081007c750f917adb SAMEA5785616 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530732/ERR3530732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530732/ERR3530732_2.fastq.gz 1315078 WGS 756662 RANDOM 88224574;89700267 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 12246d296d4d9ef3467650cedad12409 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530732/ERR3530732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530732/ERR3530732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530732/756662.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530732/756662.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530732/ERR3530732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530732/ERR3530732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530732/756662.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530732/756662.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84921121;86365641 ERS3755759 ERX3548736 GENOMIC 262040376 2019-09-19 756662 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530732/756662.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530732/756662.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530732 756662 ERR3530818 758002 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530818 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530818 2dcea310bb08cb8080ee8254b745b8d4;4fd6fd6379dde3c3732c533d11858400 1313 172148079 acaf6a3ecef4a0c49650d2ae5aa15de1;c1f837d04096f291238a4b3176bbe378 SAMEA5785529 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530818/ERR3530818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530818/ERR3530818_2.fastq.gz 2105101 WGS 758002 RANDOM 127858802;130278193 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 59f7504e11c7a5235aa925d6d4d83920 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530818/ERR3530818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530818/ERR3530818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530818/758002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530818/758002.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530818/ERR3530818_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530818/ERR3530818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530818/758002.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530818/758002.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122276645;124685359 ERS3755672 ERX3548649 GENOMIC 417798723 2019-09-19 758002 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530818/758002.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530818/758002.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530818 758002 ERR3530734 308568 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530734 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530734 dbca81d8aa7248fdbeebc2d51333309f;3e710588e082e347aaefad84476be9ab 1313 145521634 4c58171d022879b839efdab4ff93f418;3931f9bdbe5ef7b18c349bb58a695691 SAMEA5786219 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530734/ERR3530734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530734/ERR3530734_2.fastq.gz 1614624 WGS 308568 RANDOM 106076031;107722887 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 69658b65a96fed58d666f168b6936396 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530734/ERR3530734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530734/ERR3530734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530734/308568.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530734/308568.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530734/ERR3530734_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530734/ERR3530734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530734/308568.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530734/308568.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101836501;103463058 ERS3756361 ERX3549338 GENOMIC 317831104 2019-09-19 308568 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530734/308568.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530734/308568.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530734 308568 ERR3530735 304271 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530735 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530735 a6b14ed79b8ca18d6726e42f49bc6a2a;38fa8efa8ceb315f5c727151180c2276 1313 191374985 cbd0288fba23f6731100e04bc45ea812;b8a4b88c525b88ec2c858372c1bf230c SAMEA5786253 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530735/ERR3530735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530735/ERR3530735_2.fastq.gz 2223283 WGS 304271 RANDOM 140990586;142169745 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 99a02ca770157467cb3edc549a9902c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530735/ERR3530735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530735/ERR3530735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530735/304271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530735/304271.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530735/ERR3530735_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530735/ERR3530735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530735/304271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530735/304271.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135233220;136389347 ERS3756395 ERX3549372 GENOMIC 441636834 2019-09-19 304271 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530735/304271.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530735/304271.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530735 304271 ERR3530736 717950 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530736 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530736 0335778e9b42c2a8e663e0ab50bbd4a5;b4456378cbcdd4b0e026637ac7e3c963 1313 116470414 5b7e3d290c13dd089cb2222c6b5a5ba0;8cdee56d5746ee9af0540eecf1e3f836 SAMEA5785990 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530736/ERR3530736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530736/ERR3530736_2.fastq.gz 1383719 WGS 717950 RANDOM 86173461;87830257 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3b401a1e9a08f7ffd82acd603dfe81bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530736/ERR3530736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530736/ERR3530736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530736/717950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530736/717950.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530736/ERR3530736_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530736/ERR3530736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530736/717950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530736/717950.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82614142;84256071 ERS3756132 ERX3549109 GENOMIC 276474277 2019-09-19 717950 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530736/717950.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530736/717950.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530736 717950 ERR3530740 759522 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530740 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530740 ebd4d9de4bcdbc0947748018c3f734e0;551fc7b495371813e052b50f3675d3d5 1313 193173766 09b822a7a2ec2b5e18d3e9c3bac355e5;a1c71f8a3e2019609f3ef7347b273905 SAMEA5785485 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530740/ERR3530740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530740/ERR3530740_2.fastq.gz 2286817 WGS 759522 RANDOM 141942439;144976906 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cea07fcf8dc3b41fd2fa9fecdd5caf1b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530740/ERR3530740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530740/ERR3530740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530740/759522.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530740/759522.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530740/ERR3530740_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530740/ERR3530740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530740/759522.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530740/759522.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135955057;138970333 ERS3755628 ERX3548605 GENOMIC 453475198 2019-09-19 759522 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530740/759522.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530740/759522.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530740 759522 ERR3530824 720948 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530824 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530824 91e2bc254a9a259761e80bf22805c647;f580c5548fc011250b992546a310eaa9 1313 87533015 5c3419e0a95affb81b1605ee0f363649;0b4fbdc6222870d98187070155a4e138 SAMEA5785860 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530824/ERR3530824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530824/ERR3530824_2.fastq.gz 902513 WGS 720948 RANDOM 61973980;64126690 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bb4a98584c6b099f0a489fe0d23563f1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530824/ERR3530824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530824/ERR3530824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530824/720948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530824/720948.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530824/ERR3530824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530824/ERR3530824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530824/720948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530824/720948.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 59728962;61837987 ERS3756003 ERX3548980 GENOMIC 177540935 2019-09-19 720948 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530824/720948.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530824/720948.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530824 720948 ERR3530738 313925 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530738 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530738 0c2c8382f9f13d3033def9358efa2de3;a90456de2976bdd7ef644234138ffcdc 1313 134788409 a3fa46eb1dcb7b04696a4cb8c7a1641d;cd518535def959ff7594ca60778fe0b9 SAMEA5786132 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530738/ERR3530738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530738/ERR3530738_2.fastq.gz 1477636 WGS 313925 RANDOM 97112069;99225575 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 634947d39e007df6a6b724654a19aea8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530738/ERR3530738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530738/ERR3530738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530738/313925.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530738/313925.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530738/ERR3530738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530738/ERR3530738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530738/313925.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530738/313925.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93229598;95346355 ERS3756274 ERX3549251 GENOMIC 288674723 2019-09-19 313925 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530738/313925.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530738/313925.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530738 313925 ERR3530739 720193 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530739 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530739 f98326c3cb0fadcfc950d8b4ffa66936;ce8aafb63ce86d0488d9d145e822ed17 1313 163511033 285d662837e7fdf7a67b8152a6987bee;797df52f009cc0048e84d59fb4b773c8 SAMEA5785942 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530739/ERR3530739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530739/ERR3530739_2.fastq.gz 1814208 WGS 720193 RANDOM 118824626;121316493 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 38e22ec7fe9ebbd5072277fe1af85460 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530739/ERR3530739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530739/ERR3530739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530739/720193.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530739/720193.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530739/ERR3530739_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530739/ERR3530739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530739/720193.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530739/720193.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114033279;116495749 ERS3756084 ERX3549061 GENOMIC 360942834 2019-09-19 720193 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530739/720193.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530739/720193.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530739 720193 ERR3530741 667374 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530741 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530741 0ccde1c462843ba342ea70a93578e615;3c8a280f9a530f5eac25e237dddce9a9 1313 179853161 6b29ae2d1191181197003bc3830a8af8;196cc14c7dc1de7177db2355382126f9 SAMEA5786064 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530741/ERR3530741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530741/ERR3530741_2.fastq.gz 1897645 WGS 667374 RANDOM 127541324;133828718 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 12614244f3edcefbcd494801ff26d72d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530741/ERR3530741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530741/ERR3530741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530741/667374.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530741/667374.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530741/ERR3530741_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530741/ERR3530741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530741/667374.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530741/667374.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122545223;128726570 ERS3756206 ERX3549183 GENOMIC 376214000 2019-09-19 667374 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530741/667374.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530741/667374.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530741 667374 ERR3530858 756636 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530858 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530858 fc80b5994e67a245aeeef188da0a1756;52bb01de159f797d9a717469664dd2d5 1313 182664345 c357731e4a17a704116b3ce9e471b19d;949aeabfd934ee9220b0355fae282754 SAMEA5785641 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530858/ERR3530858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530858/ERR3530858_2.fastq.gz 1978245 WGS 756636 RANDOM 132866660;134803192 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8723fff10332897520a04faf0ca4d422 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530858/ERR3530858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530858/ERR3530858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530858/756636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530858/756636.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530858/ERR3530858_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530858/ERR3530858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530858/756636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530858/756636.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127697770;129607270 ERS3755784 ERX3548761 GENOMIC 394389734 2019-09-19 756636 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530858/756636.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530858/756636.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530858 756636 ERR3530828 756655 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530828 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530828 19486f79a95e7071ed944b5d8d0a78c6;d2bfe81e8f781dfb15271841982d0b60 1313 169316584 61c6e00882f2f816a9d86153432db96d;d413766f7a0e1d132c34f8ffd839dc0c SAMEA5785623 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530828/ERR3530828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530828/ERR3530828_2.fastq.gz 1815988 WGS 756655 RANDOM 122338223;125409309 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9d2ec5de30c94b58a1d268225fa06bc1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530828/ERR3530828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530828/ERR3530828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530828/756655.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530828/756655.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530828/ERR3530828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530828/ERR3530828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530828/756655.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530828/756655.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117541040;120566003 ERS3755766 ERX3548743 GENOMIC 361622341 2019-09-19 756655 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530828/756655.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530828/756655.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530828 756655 ERR3530745 753444 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530745 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530745 05edac34c95485f27a0ee1b16f90eede;bba9bde30a6bddabd9fb492a6878af73 1313 117318475 0ca88150a8b516eece75c5e00a86b142;0436be3387f7a58954ae4ee39eac86cc SAMEA5785746 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530745/ERR3530745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530745/ERR3530745_2.fastq.gz 1322054 WGS 753444 RANDOM 86972202;85940337 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 49d722e0ccba418149c50357a6f2062a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530745/ERR3530745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530745/ERR3530745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530745/753444.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530745/753444.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530745/ERR3530745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530745/ERR3530745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530745/753444.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530745/753444.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83635663;82611759 ERS3755889 ERX3548866 GENOMIC 261114701 2019-09-19 753444 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530745/753444.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530745/753444.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530745 753444 ERR3530743 757943 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530743 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530743 dde9b742003eda297ce773e68d7078fa;5f08c990df90126527a48d8ccfb52343 1313 71245035 061d6871f41e6aeb090264de300cd994;1655a391cc43f638c037f555a3b922f7 SAMEA5785585 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530743/ERR3530743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530743/ERR3530743_2.fastq.gz 850140 WGS 757943 RANDOM 52060477;54308378 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 89e0a8544a933647466abf11be841bc9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530743/ERR3530743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530743/ERR3530743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530743/757943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530743/757943.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530743/ERR3530743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530743/ERR3530743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530743/757943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530743/757943.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 49888876;52133930 ERS3755728 ERX3548705 GENOMIC 168270563 2019-09-19 757943 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530743/757943.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530743/757943.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530743 757943 ERR3530859 757986 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530859 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530859 be63586062f8b2659df977a6fb6dd6e4;b00b3b20f75ce849cb66d56cc130dc48 1313 204095304 3c73ec32f6ec7eb74eac4c06e098bd5b;fc2175ebabdc6efdc4724a769e260fc7 SAMEA5785544 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530859/ERR3530859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530859/ERR3530859_2.fastq.gz 2474381 WGS 757986 RANDOM 149776348;154839497 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 92ea722c50468587944c364f3925d6a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530859/ERR3530859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530859/ERR3530859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530859/757986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530859/757986.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530859/ERR3530859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530859/ERR3530859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530859/757986.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530859/757986.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143368982;148415146 ERS3755687 ERX3548664 GENOMIC 489981003 2019-09-19 757986 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530859/757986.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530859/757986.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530859 757986 ERR3530747 717963 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530747 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530747 7a00e97cdb05b4d482eb82b7dc971700;0874784dd3af29657819cd9e1757d940 1313 158218074 ad1e7298d8cb9831749dff1a8ec04b77;ce170f9db5f1c117c4bb22b5ad3ca967 SAMEA5785977 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530747/ERR3530747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530747/ERR3530747_2.fastq.gz 1858837 WGS 717963 RANDOM 116596964;118714132 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ef07321d33e50c6ddd9012886e65abd0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530747/ERR3530747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530747/ERR3530747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530747/717963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530747/717963.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530747/ERR3530747_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530747/ERR3530747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530747/717963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530747/717963.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111597522;113704116 ERS3756119 ERX3549096 GENOMIC 368426414 2019-09-19 717963 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530747/717963.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530747/717963.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530747 717963 ERR3530748 652828 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530748 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530748 e888bd71b64341d252ec9fd2c5f84b47;deaa53cba9d6862d6a2945250be5e3ca 1313 111773471 9f08eafb7d3fbe6ff5b7e5ef5b88053e;02a53b7c4500d69d675248a81ae8d43c SAMEA5786096 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530748/ERR3530748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530748/ERR3530748_2.fastq.gz 1227892 WGS 652828 RANDOM 79879746;84585042 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 23b65139002e3e01552efc3bd62af953 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530748/ERR3530748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530748/ERR3530748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530748/652828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530748/652828.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530748/ERR3530748_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530748/ERR3530748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530748/652828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530748/652828.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 76814164;81491489 ERS3756238 ERX3549215 GENOMIC 244931410 2019-09-19 652828 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530748/652828.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530748/652828.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530748 652828 ERR3530749 720250 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530749 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530749 311ef0ad874a172b11d174e10cac667d;a6c3487ccca5992584cea0805bf87d11 1313 212464846 806c8fb2169315982c8283585592d834;37f0f9f3f5c1eff39487d8bc10af6cfd SAMEA5785884 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530749/ERR3530749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530749/ERR3530749_2.fastq.gz 2391934 WGS 720250 RANDOM 155912276;156182432 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 410d5b903ca1466b447cac75d8fe245e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530749/ERR3530749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530749/ERR3530749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530749/720250.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530749/720250.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530749/ERR3530749_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530749/ERR3530749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530749/720250.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530749/720250.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 149712895;149980758 ERS3756027 ERX3549004 GENOMIC 475305252 2019-09-19 720250 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530749/720250.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530749/720250.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530749 720250 ERR3530750 720259 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530750 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530750 ff470059495050e8379b4501c99c7115;2f08c53627d95991882fa3b465950e86 1313 188968321 1e7396b740f355c7f061fd4fa3e07d50;c722dff1be016d129c30cca89ce94ef3 SAMEA5785875 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530750/ERR3530750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530750/ERR3530750_2.fastq.gz 2077367 WGS 720259 RANDOM 135840508;140388821 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e7256fa824b02e23d2d76974af457f63 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530750/ERR3530750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530750/ERR3530750_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530750/720259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530750/720259.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530750/ERR3530750_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530750/ERR3530750_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530750/720259.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530750/720259.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130330933;134861355 ERS3756018 ERX3548995 GENOMIC 411270025 2019-09-19 720259 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530750/720259.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530750/720259.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530750 720259 ERR3530751 756665 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530751 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530751 2aaeafe191cdab0b7cc4c05764e95dfc;3125be8c2e99e5b6b2ba26c1521c952d 1313 108770012 a538a4914dec4247ae442a84be08335d;a9cfd49ea92087ad8d27346de3c3691a SAMEA5785613 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530751/ERR3530751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530751/ERR3530751_2.fastq.gz 1175853 WGS 756665 RANDOM 79357592;80093299 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f1a7a2e0aadcc7d17e82bb04a11ee540 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530751/ERR3530751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530751/ERR3530751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530751/756665.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530751/756665.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530751/ERR3530751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530751/ERR3530751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530751/756665.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530751/756665.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 76389321;77097784 ERS3755756 ERX3548733 GENOMIC 233708546 2019-09-19 756665 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530751/756665.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530751/756665.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530751 756665 ERR3530752 720185 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530752 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530752 c2f47bc0af1ca225e7f281c985687ae3;364d4927d4629dd518f74fa57b4acbb0 1313 198962777 11fe612e680e27217e6d12e9ff3d08f6;e25d9e18ee9d3c4358d7bac9d8a5e63c SAMEA5785950 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530752/ERR3530752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530752/ERR3530752_2.fastq.gz 2255621 WGS 720185 RANDOM 145117400;146637759 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6d10d0eb7fd173543c04556f179e8151 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530752/ERR3530752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530752/ERR3530752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530752/720185.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530752/720185.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530752/ERR3530752_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530752/ERR3530752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530752/720185.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530752/720185.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139216262;140733174 ERS3756092 ERX3549069 GENOMIC 439554716 2019-09-19 720185 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530752/720185.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530752/720185.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530752 720185 ERR3530753 753477 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530753 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530753 9975653afb4c1527908e45d24ff1ba88;edd9db3f26b7c07422b7b88d39bafc8d 1313 72722380 1d39b51ed3f5711b3b95422f8e4a4c9b;018f117c7baf48742d6af158b39411b5 SAMEA5785715 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530753/ERR3530753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530753/ERR3530753_2.fastq.gz 794776 WGS 753477 RANDOM 52912282;53805026 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 58b26575610eeecdb3020e5b39cfed48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530753/ERR3530753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530753/ERR3530753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530753/753477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530753/753477.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530753/ERR3530753_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530753/ERR3530753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530753/753477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530753/753477.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 50927330;51813968 ERS3755858 ERX3548835 GENOMIC 158267276 2019-09-19 753477 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530753/753477.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530753/753477.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530753 753477 ERR3530754 657302 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530754 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530754 e41ef062665f1e90ca37fabb27a624ce;042576cb0eb17e17892319f5307a25b6 1313 138019660 6cb21b399a67975258768b74bc33ca12;178921245e9fc8cf9710c22b3147aed4 SAMEA5786090 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530754/ERR3530754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530754/ERR3530754_2.fastq.gz 1749137 WGS 657302 RANDOM 102705256;105807648 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ef5cf7678fdd9a63e6373ad68ff10854 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530754/ERR3530754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530754/ERR3530754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530754/657302.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530754/657302.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530754/ERR3530754_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530754/ERR3530754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530754/657302.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530754/657302.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98061259;101135285 ERS3756232 ERX3549209 GENOMIC 347190225 2019-09-19 657302 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530754/657302.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530754/657302.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530754 657302 ERR3530755 651036 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530755 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530755 053a3c9b5cb2e6abec3821afcd6c8408;e7577b0d400fe16ef2b1a409fa5f8fae 1313 251087313 3303ccc013c631daadc5e99988273115;997b9bfb2f50576c4170c07694d9b9e0 SAMEA5786112 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530755/ERR3530755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530755/ERR3530755_2.fastq.gz 2797726 WGS 651036 RANDOM 182574952;187151058 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cd24e129a5050a9b7461906acc769b5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530755/ERR3530755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530755/ERR3530755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530755/651036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530755/651036.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530755/ERR3530755_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530755/ERR3530755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530755/651036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530755/651036.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 175346045;179913067 ERS3756254 ERX3549231 GENOMIC 558956714 2019-09-19 651036 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530755/651036.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530755/651036.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530755 651036 ERR3530756 720220 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530756 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530756 af99071f5df4282d7e835cb578ab38d8;580278c9149962ebd8507f302c210d8a 1313 254271234 fbc409c2e07ae6282871622677614992;65b16dae466a1ef1b4934cdc78eec3b2 SAMEA5785914 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530756/ERR3530756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530756/ERR3530756_2.fastq.gz 2854870 WGS 720220 RANDOM 185450547;187479670 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ca73979f02d02fd187ca0a1f917dc87a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530756/ERR3530756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530756/ERR3530756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530756/720220.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530756/720220.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530756/ERR3530756_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530756/ERR3530756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530756/720220.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530756/720220.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 177895626;179913454 ERS3756057 ERX3549034 GENOMIC 564878218 2019-09-19 720220 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530756/720220.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530756/720220.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530756 720220 ERR3530872 760595 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530872 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530872 0b6276617bad812c893bc6edccd03b9d;1c048ae82fc6424ee023862e3d4b6615 1313 140871368 a51ad3abfaa67f45903008b6094464df;a29c606ed21dfd2eff899a1d465db57c SAMEA5785442 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530872/ERR3530872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530872/ERR3530872_2.fastq.gz 1537594 WGS 760595 RANDOM 102272027;104654131 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 988491b1241ee5bc47df376cea6aa734 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530872/ERR3530872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530872/ERR3530872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530872/760595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530872/760595.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530872/ERR3530872_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530872/ERR3530872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530872/760595.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530872/760595.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98336612;100687427 ERS3755585 ERX3548562 GENOMIC 306315847 2019-09-19 760595 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530872/760595.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530872/760595.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530872 760595 ERR3530758 756659 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530758 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530758 951454b40b446cbfa181f0187ad538f9;a30fadc9f11afb61016cd4bdd7aa2398 1313 158116652 17f5ba8dca668a42b3ece6ca74e483a0;a9811d897b03f5c20659416d9a3a040f SAMEA5785619 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530758/ERR3530758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530758/ERR3530758_2.fastq.gz 1731938 WGS 756659 RANDOM 115635971;116874229 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 068ead6f96f0386a414aabc35f211fc0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530758/ERR3530758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530758/ERR3530758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530758/756659.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530758/756659.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530758/ERR3530758_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530758/ERR3530758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530758/756659.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530758/756659.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111075317;112282419 ERS3755762 ERX3548739 GENOMIC 343701255 2019-09-19 756659 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530758/756659.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530758/756659.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530758 756659 ERR3530759 759518 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530759 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530759 ffffb6805954a0c2d32089d975f936c4;97d872007cf26a602a38477ecd01c278 1313 205161518 83893b5a74877ff6ff33d7c2acfc983d;8fec9b8d2825a788c082c0a9e4e59be0 SAMEA5785489 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530759/ERR3530759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530759/ERR3530759_2.fastq.gz 2422191 WGS 759518 RANDOM 149825609;154677453 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 436425324d9ea5bc1ba0aa970ab9a7bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530759/ERR3530759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530759/ERR3530759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530759/759518.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530759/759518.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530759/ERR3530759_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530759/ERR3530759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530759/759518.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530759/759518.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143540490;148362293 ERS3755632 ERX3548609 GENOMIC 482288802 2019-09-19 759518 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530759/759518.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530759/759518.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530759 759518 ERR3530760 757999 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530760 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530760 5430d4e1db562aaa1a7666b3ed68e234;95cdac31a7d575510f4a76633e6c49fa 1313 91499467 e454e2fa3cf391acea9285e794408e12;b20718f505e1c1b63f1581f954b7e1ed SAMEA5785531 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530760/ERR3530760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530760/ERR3530760_2.fastq.gz 1106440 WGS 757999 RANDOM 67131884;69386291 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2d69351778d0885c96a6a0b71c57a90d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530760/ERR3530760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530760/ERR3530760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530760/757999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530760/757999.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530760/ERR3530760_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530760/ERR3530760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530760/757999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530760/757999.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 64247007;66505940 ERS3755674 ERX3548651 GENOMIC 214194561 2019-09-19 757999 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530760/757999.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530760/757999.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530760 757999 ERR3530761 759542 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530761 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530761 dd348efb9b9a8887d5c1c7166ad52edb;249dfa3d1095bb1f83bd5c5c26f119a7 1313 168164686 693faa298cf4ac41844f5e780a1926f3;1235e6be73ca97a8c8568e5905734774 SAMEA5785465 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530761/ERR3530761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530761/ERR3530761_2.fastq.gz 1994970 WGS 759542 RANDOM 123508996;127158729 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 927b11d858be22b69e7bf37798a2faa4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530761/ERR3530761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530761/ERR3530761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530761/759542.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530761/759542.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530761/ERR3530761_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530761/ERR3530761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530761/759542.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530761/759542.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118186136;121826194 ERS3755608 ERX3548585 GENOMIC 397906440 2019-09-19 759542 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530761/759542.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530761/759542.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530761 759542 ERR3530875 720211 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530875 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530875 343cb8bd5baf1f70ad8c4558f19c2248;eb207c28148f153b83c6df7f0d1c673c 1313 105118947 ba1ea1be00157b5c571f39e09b5fc8aa;86c22138a03343b0fcd0126593f82424 SAMEA5785924 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530875/ERR3530875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530875/ERR3530875_2.fastq.gz 1140978 WGS 720211 RANDOM 74373969;78696386 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4063b2176905523ca8c06bb6cdea5424 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530875/ERR3530875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530875/ERR3530875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530875/720211.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530875/720211.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530875/ERR3530875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530875/ERR3530875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530875/720211.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530875/720211.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71470532;75745724 ERS3756066 ERX3549043 GENOMIC 226486592 2019-09-19 720211 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530875/720211.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530875/720211.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530875 720211 ERR3530763 756616 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530763 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530763 de35159169910235046fecdcab0b6a67;edd74585c82731ed8c0096105aa6ea87 1313 156996728 437672a8f00a691a888ef8bf697106f4;2a5d84e30b7fa08574baef3e8770ab25 SAMEA5785661 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530763/ERR3530763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530763/ERR3530763_2.fastq.gz 1700845 WGS 756616 RANDOM 114855628;115306167 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9632d5215ab5ad36513a3d404e853d5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530763/ERR3530763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530763/ERR3530763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530763/756616.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530763/756616.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530763/ERR3530763_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530763/ERR3530763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530763/756616.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530763/756616.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110361211;110787969 ERS3755804 ERX3548781 GENOMIC 337539113 2019-09-19 756616 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530763/756616.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530763/756616.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530763 756616 ERR3530764 720248 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530764 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530764 b55a763749d90f18906a80131ac2f2b8;8a02efcaf21d79b0e0e4326cc0820b92 1313 205950048 c237e9519d9ea0d253687be886aee433;44eaad490695f2720449e5ad77e66bf5 SAMEA5785886 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530764/ERR3530764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530764/ERR3530764_2.fastq.gz 2301473 WGS 720248 RANDOM 148908384;152371968 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a5827a7a02e050657668f68738239e9e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530764/ERR3530764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530764/ERR3530764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530764/720248.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530764/720248.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530764/ERR3530764_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530764/ERR3530764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530764/720248.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530764/720248.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 142907115;146381171 ERS3756029 ERX3549006 GENOMIC 450110726 2019-09-19 720248 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530764/720248.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530764/720248.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530764 720248 ERR3530765 759527 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530765 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530765 13e10ef0147f717dd9db29e0b51445d7;33b883d658b04224743bf422df40c7dd 1313 148964838 bd41a7114927d208c84970e99f3dd874;66abba4dbf2fdf8b6ec0a758953c7cc4 SAMEA5785480 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530765/ERR3530765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530765/ERR3530765_2.fastq.gz 1745769 WGS 759527 RANDOM 109159807;112745818 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0dd49c384b2430efdb2d2729033c76bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530765/ERR3530765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530765/ERR3530765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530765/759527.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530765/759527.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530765/ERR3530765_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530765/ERR3530765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530765/759527.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530765/759527.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104530620;108111975 ERS3755623 ERX3548600 GENOMIC 348549826 2019-09-19 759527 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530765/759527.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530765/759527.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530765 759527 ERR3530766 717949 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530766 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530766 33857d7c421eb84b9d53d9a67facfd95;a59d4c100c7396887fe56d654aee60b0 1313 158584229 8b6eefeca4745a02f80690ddf3a2e652;96b183b204eb213ab64e1267c6869afb SAMEA5785991 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530766/ERR3530766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530766/ERR3530766_2.fastq.gz 1838717 WGS 717949 RANDOM 116137711;118981875 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1cde26d9342df17b1cb328a1a0a8a8ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530766/ERR3530766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530766/ERR3530766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530766/717949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530766/717949.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530766/ERR3530766_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530766/ERR3530766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530766/717949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530766/717949.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111229366;114064592 ERS3756133 ERX3549110 GENOMIC 364111603 2019-09-19 717949 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530766/717949.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530766/717949.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530766 717949 ERR3530767 753500 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530767 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530767 8644ecea9b166f73d9fd8dd62daae167;f0ddf572b31995f45584b6989d132df6 1313 87142016 e7d64d6f701d8aba72f96b868a939d7a;5727bd6331f588e976476ce5ba0ec4d7 SAMEA5785694 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530767/ERR3530767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530767/ERR3530767_2.fastq.gz 948069 WGS 753500 RANDOM 62731809;64861523 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6e13c66103a50f4ebd8c239a66ee5a16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530767/ERR3530767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530767/ERR3530767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530767/753500.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530767/753500.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530767/ERR3530767_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530767/ERR3530767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530767/753500.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530767/753500.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60324356;62443304 ERS3755837 ERX3548814 GENOMIC 188401809 2019-09-19 753500 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530767/753500.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530767/753500.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530767 753500 ERR3530768 757968 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530768 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530768 69dee0f5de7cc23e2778aec894bcadc6;f5aab15d4b59d5716e94adc821ddad76 1313 110442268 215aef17b683de824a21f4fd2140e75f;eb7c737756f4427d3aa1e23b7d963b12 SAMEA5785562 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530768/ERR3530768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530768/ERR3530768_2.fastq.gz 1352041 WGS 757968 RANDOM 81862260;83816128 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eb877844821a6d2a3b804fcc954ff8a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530768/ERR3530768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530768/ERR3530768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530768/757968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530768/757968.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530768/ERR3530768_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530768/ERR3530768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530768/757968.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530768/757968.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78401219;80344608 ERS3755705 ERX3548682 GENOMIC 267308622 2019-09-19 757968 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530768/757968.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530768/757968.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530768 757968 ERR3530769 717953 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530769 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530769 7479f7ec0e42fae4e4ecf24cf576efb9;7a14ab93ea854137bbc14683f62ddf20 1313 255995580 aec9ae5571e206d3c3544169eaa59c44;346096422715881cc5a5deb657bcdcc5 SAMEA5785987 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530769/ERR3530769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530769/ERR3530769_2.fastq.gz 2998224 WGS 717953 RANDOM 186346914;191845378 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 71ab028da15df9037f53d456bf8a50aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530769/ERR3530769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530769/ERR3530769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530769/717953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530769/717953.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530769/ERR3530769_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530769/ERR3530769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530769/717953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530769/717953.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 178237879;183711802 ERS3756129 ERX3549106 GENOMIC 586023676 2019-09-19 717953 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530769/717953.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530769/717953.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530769 717953 ERR3530770 720955 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530770 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530770 1065045a6da23565606ce93fdbdc3c66;a70aa695c031d5355a12b58f2062399b 1313 308761473 f49f65435f0c130a34faf1b403c731e7;26a9c9ca521f1c8036e44cf6cda5a1ec SAMEA5785853 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530770/ERR3530770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530770/ERR3530770_2.fastq.gz 3222330 WGS 720955 RANDOM 222101120;224735301 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2a153d83aafe197cf86990d7681ff2cd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530770/ERR3530770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530770/ERR3530770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530770/720955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530770/720955.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530770/ERR3530770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530770/ERR3530770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530770/720955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530770/720955.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 213332207;215926663 ERS3755996 ERX3548973 GENOMIC 639343966 2019-09-19 720955 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530770/720955.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530770/720955.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530770 720955 ERR3530771 651722 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530771 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530771 07b6ee7808e3b78675c619db3c6a0e8e;cc4547a5050cca329cb9020a4b6d47bc 1313 179743879 3b55610d1208ba3382521ee96d289982;2b30ec1b6d74565f31123a0e532f7378 SAMEA5786104 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530771/ERR3530771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530771/ERR3530771_2.fastq.gz 2107003 WGS 651722 RANDOM 133288524;133958954 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 94e08cdf23dec841ec3cda76641a594b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530771/ERR3530771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530771/ERR3530771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530771/651722.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530771/651722.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530771/ERR3530771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530771/ERR3530771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530771/651722.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530771/651722.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127712648;128380314 ERS3756246 ERX3549223 GENOMIC 420797988 2019-09-19 651722 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530771/651722.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530771/651722.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530771 651722 ERR3530772 651035 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530772 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530772 2d88e7c9ddf7a0a56f8262a699581ae2;66c0bc66717048efb05553d2a18ae839 1313 175632607 456b127d00c7734fd91c465cbcec466c;087aa7818c490a3fd054677fef8627e6 SAMEA5786113 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530772/ERR3530772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530772/ERR3530772_2.fastq.gz 1942406 WGS 651035 RANDOM 128325383;130528903 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 05ca3a50838804d3d7b9a5d1014ab179 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530772/ERR3530772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530772/ERR3530772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530772/651035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530772/651035.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530772/ERR3530772_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530772/ERR3530772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530772/651035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530772/651035.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123235867;125431911 ERS3756255 ERX3549232 GENOMIC 388052586 2019-09-19 651035 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530772/651035.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530772/651035.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530772 651035 ERR3530773 756680 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530773 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530773 ef5bfc99e6de44aecf1d578ec3b74386;0c7606f4fc512f8b727a7521353317a4 1313 144775290 b63175a75ca295f829f7f8090cb6692e;d2537679e1b1c95e2b4d008a80fc09d9 SAMEA5785598 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530773/ERR3530773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530773/ERR3530773_2.fastq.gz 1550130 WGS 756680 RANDOM 104046229;107438554 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. af08a4378a2c2a4f6bd97788663ca76a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530773/ERR3530773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530773/ERR3530773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530773/756680.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530773/756680.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530773/ERR3530773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530773/ERR3530773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530773/756680.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530773/756680.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100032360;103363332 ERS3755741 ERX3548718 GENOMIC 308305899 2019-09-19 756680 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530773/756680.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530773/756680.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530773 756680 ERR3530774 756646 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530774 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530774 9f449f9b8616c65332362fbba1eb1e84;e37232b144ddd474270ec0852613026d 1313 166531120 2e7a36bbe00811d56e57b9046f78a80f;7039193c823a20ca9b648e34bfaed0c3 SAMEA5785632 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530774/ERR3530774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530774/ERR3530774_2.fastq.gz 1793005 WGS 756646 RANDOM 121083501;123022472 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1af3675aee4036aece33482c4dff44bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530774/ERR3530774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530774/ERR3530774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530774/756646.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530774/756646.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530774/ERR3530774_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530774/ERR3530774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530774/756646.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530774/756646.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116321499;118231699 ERS3755775 ERX3548752 GENOMIC 357842280 2019-09-19 756646 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530774/756646.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530774/756646.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530774 756646 ERR3530775 308604 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530775 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530775 36d51fb65987c5c5bd4a5d1e3558e461;170d7970bbc5010a362aeea5f9df34d9 1313 155982299 0a65ecb44faa05f114dabb9b927f22ec;d076a562b2006fa636fc59c85df5e071 SAMEA5786186 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530775/ERR3530775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530775/ERR3530775_2.fastq.gz 1710084 WGS 308604 RANDOM 113452261;115358608 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1cb6c6590a583db86967702e6b9411dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530775/ERR3530775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530775/ERR3530775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530775/308604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530775/308604.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530775/ERR3530775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530775/ERR3530775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530775/308604.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530775/308604.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 108896963;110780448 ERS3756328 ERX3549305 GENOMIC 339246277 2019-09-19 308604 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530775/308604.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530775/308604.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530775 308604 ERR3530776 720258 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530776 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530776 eedafe0b34d3f12b41ae6ea05364ca7e;a2e3bbbe911d2d544b541a89806972fe 1313 116334812 a887aab9cc149673468754faa1c87190;51e0df1dc1d2a23212e02d87277f36ad SAMEA5785876 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530776/ERR3530776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530776/ERR3530776_2.fastq.gz 1286664 WGS 720258 RANDOM 84284830;86403984 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e8b54d38fd8e6501afe9421c280c29d8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530776/ERR3530776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530776/ERR3530776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530776/720258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530776/720258.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530776/ERR3530776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530776/ERR3530776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530776/720258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530776/720258.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80999258;83106216 ERS3756019 ERX3548996 GENOMIC 255287154 2019-09-19 720258 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530776/720258.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530776/720258.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530776 720258 ERR3530777 304282 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530777 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530777 e12a84a81884bf24a47be6b8abc78973;0cdfb657dcfc5595a4d34f661c4aa9aa 1313 140906107 8d361ec5d467f0a853192c978ffbac62;e850a32a378db841f068af85e3ec9eda SAMEA5786244 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530777/ERR3530777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530777/ERR3530777_2.fastq.gz 1634537 WGS 304282 RANDOM 103455907;105196275 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5a1cd722151c7e6d76500fde7a77c6f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530777/ERR3530777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530777/ERR3530777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530777/304282.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530777/304282.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530777/ERR3530777_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530777/ERR3530777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530777/304282.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530777/304282.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99196904;100930757 ERS3756386 ERX3549363 GENOMIC 323922714 2019-09-19 304282 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530777/304282.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530777/304282.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530777 304282 ERR3530778 720947 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530778 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530778 47d0e24ad3b6ece56481d6cdbddd8fae;6723a7a6d409b0df898a0e6dca27f9dc 1313 261103795 69b02681eb20dc15cc866598ef4664a9;682e4c690ab5b5950c103dd79944741d SAMEA5785861 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530778/ERR3530778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530778/ERR3530778_2.fastq.gz 2732839 WGS 720947 RANDOM 187224618;189285023 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0e2d3512145551af3db7ae3cf8613015 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530778/ERR3530778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530778/ERR3530778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530778/720947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530778/720947.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530778/ERR3530778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530778/ERR3530778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530778/720947.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530778/720947.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 180124871;182162101 ERS3756004 ERX3548981 GENOMIC 537457727 2019-09-19 720947 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530778/720947.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530778/720947.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530778 720947 ERR3530779 759509 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530779 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530779 b78b9476b8b9f52e7f394f6cfa5ccbde;4267750314aff9cb1262dc369a5dbe26 1313 190574648 ffd1deceb03eda1a43446c01f984d107;4624f627a53f1a93c483d8762bd0fc86 SAMEA5785498 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530779/ERR3530779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530779/ERR3530779_2.fastq.gz 2255088 WGS 759509 RANDOM 140361321;143301511 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e6e9cffab4f9fad19d81669dd858e6bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530779/ERR3530779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530779/ERR3530779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530779/759509.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530779/759509.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530779/ERR3530779_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530779/ERR3530779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530779/759509.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530779/759509.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 134506170;137427710 ERS3755641 ERX3548618 GENOMIC 449219463 2019-09-19 759509 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530779/759509.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530779/759509.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530779 759509 ERR3530780 651028 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530780 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530780 c3f53f48e9950251bf03c8567ad50bb9;d0dab6265675d1507b49115a70cf1b59 1313 250800415 57b36c615df5c127470dcd7978ef5ee7;f4626ec09456b4afa7340c143015f04a SAMEA5786119 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530780/ERR3530780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530780/ERR3530780_2.fastq.gz 2766675 WGS 651028 RANDOM 181726589;186544369 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 64d792016b07c43590666e542afe8099 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530780/ERR3530780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530780/ERR3530780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530780/651028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530780/651028.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530780/ERR3530780_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530780/ERR3530780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530780/651028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530780/651028.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 174628616;179423336 ERS3756261 ERX3549238 GENOMIC 552916993 2019-09-19 651028 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530780/651028.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530780/651028.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530780 651028 ERR3530781 759508 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530781 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530781 d59c12f6baa94b2fcb55eb828c37a3e8;ad30abb203a252f60ca3a50e61b513db 1313 180574066 35d928f73aa5754cb4bae614f9b5ace6;5d0d997100b6f1f48ccda5d7e5e01339 SAMEA5785499 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530781/ERR3530781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530781/ERR3530781_2.fastq.gz 2135779 WGS 759508 RANDOM 132785289;135783766 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8f1bd59bf03338ab4abd61503efba18c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530781/ERR3530781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530781/ERR3530781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530781/759508.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530781/759508.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530781/ERR3530781_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530781/ERR3530781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530781/759508.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530781/759508.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127155181;130129178 ERS3755642 ERX3548619 GENOMIC 425405693 2019-09-19 759508 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530781/759508.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530781/759508.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530781 759508 ERR3530782 717918 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530782 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530782 6686759a42bca4471cb3fb49d70c3edd;b1d34ae7f592325252ea826681a597d4 1313 155044513 49579b64e59bdc7633c59091544a4396;ad53644bea392468c8db5568e82e7db2 SAMEA5786014 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530782/ERR3530782_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530782/ERR3530782_2.fastq.gz 1843362 WGS 717918 RANDOM 114791422;116906374 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 37fbac57364738c7109fb18fc898f094 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530782/ERR3530782_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530782/ERR3530782_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530782/717918.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530782/717918.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530782/ERR3530782_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530782/ERR3530782_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530782/717918.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530782/717918.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109864833;111972905 ERS3756156 ERX3549133 GENOMIC 367822764 2019-09-19 717918 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530782/717918.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530782/717918.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530782 717918 ERR3530783 759534 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530783 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530783 00eb5c134ea0be3fbd966fa538c5863c;50b8734fc799e3f2f2cab8a50c2416c8 1313 187939207 fba4427eabb831935b34b5a0ffd02986;0e80d2558e51f58d0b150c04fa373109 SAMEA5785473 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530783/ERR3530783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530783/ERR3530783_2.fastq.gz 2214283 WGS 759534 RANDOM 136507351;142588336 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 54f9085c1f2328d479a0bb0573c6e950 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530783/ERR3530783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530783/ERR3530783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530783/759534.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530783/759534.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530783/ERR3530783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530783/ERR3530783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530783/759534.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530783/759534.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130683165;136750276 ERS3755616 ERX3548593 GENOMIC 440875181 2019-09-19 759534 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530783/759534.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530783/759534.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530783 759534 ERR3530784 720245 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530784 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530784 b341e33fd39a5b1fc89c732dc3fcab84;113e245da5c5083ca04cc1a246ce3fa3 1313 221049745 95bcebbc0137161b2ccc98e5fde1b656;c183a08796cd474c442a95c680f47f76 SAMEA5785889 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530784/ERR3530784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530784/ERR3530784_2.fastq.gz 2460908 WGS 720245 RANDOM 160114610;163776773 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8396a7e36ca5d90994360ebaaf305332 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530784/ERR3530784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530784/ERR3530784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530784/720245.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530784/720245.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530784/ERR3530784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530784/ERR3530784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530784/720245.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530784/720245.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 153775706;157421187 ERS3756032 ERX3549009 GENOMIC 489107337 2019-09-19 720245 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530784/720245.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530784/720245.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530784 720245 ERR3530785 753458 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530785 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530785 82f7fddd6e1bb7dac0bfad3ad654d67a;c1f8cb5690995aa5affb7cdf62aaa159 1313 40657397 f1ba6c15ad86476aba336ebbd6f54aee;69c41e3da70e83c86bb7e357edbdecf8 SAMEA5785732 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530785/ERR3530785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530785/ERR3530785_2.fastq.gz 440250 WGS 753458 RANDOM 29287754;30209077 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7f3912968582b5c58f426590af164113 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530785/ERR3530785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530785/ERR3530785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530785/753458.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530785/753458.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530785/ERR3530785_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530785/ERR3530785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530785/753458.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530785/753458.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 28193557;29107328 ERS3755875 ERX3548852 GENOMIC 86919192 2019-09-19 753458 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530785/753458.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530785/753458.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530785 753458 ERR3530790 721013 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530790 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530790 a5d7a068cde618cfb1c0c6c33759447f;0a5a0d7017e57a1b01013736aa20c0b6 1313 264264222 ea9709678a18a4d33ac61e50159a3518;230f22bc637c0e504070fe63c3ba0120 SAMEA5785796 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530790/ERR3530790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530790/ERR3530790_2.fastq.gz 2776441 WGS 721013 RANDOM 190437734;191954332 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 149c9ce6736a89ae5e03e304458ea393 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530790/ERR3530790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530790/ERR3530790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530790/721013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530790/721013.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530790/ERR3530790_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530790/ERR3530790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530790/721013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530790/721013.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 183214556;184706541 ERS3755939 ERX3548916 GENOMIC 549527438 2019-09-19 721013 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530790/721013.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530790/721013.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530790 721013 ERR3530787 753456 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530787 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530787 a76a393a688056be0dd0cf663bdd4934;9abe47af46a5c2fbf8e77045239169c4 1313 41601050 c3049a7b7e630391b487b0c9a2f89aa0;fd425c98406bb6808412e0bb00f2e1e2 SAMEA5785734 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530787/ERR3530787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530787/ERR3530787_2.fastq.gz 449271 WGS 753456 RANDOM 29855889;31042496 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 01736976cad445b244537522e704970a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530787/ERR3530787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530787/ERR3530787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530787/753456.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530787/753456.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530787/ERR3530787_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530787/ERR3530787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530787/753456.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530787/753456.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 28751894;29929010 ERS3755877 ERX3548854 GENOMIC 89250147 2019-09-19 753456 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530787/753456.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530787/753456.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530787 753456 ERR3530788 758014 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530788 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530788 76f074faf6bc7f8608f8027bf7127fcc;2627b0f3700b1d39c787a759a580ce14 1313 88148160 f238334d965851905d448bdfac33fb60;a5a834adc0c996c0da325a70382629ea SAMEA5785517 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530788/ERR3530788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530788/ERR3530788_2.fastq.gz 1080158 WGS 758014 RANDOM 65400053;66592094 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2d68ddf1ef0b1de2c8e5065b653ee71c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530788/ERR3530788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530788/ERR3530788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530788/758014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530788/758014.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530788/ERR3530788_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530788/ERR3530788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530788/758014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530788/758014.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 62594509;63779207 ERS3755660 ERX3548637 GENOMIC 210194777 2019-09-19 758014 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530788/758014.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530788/758014.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530788 758014 ERR3530786 717992 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530786 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530786 766b6072913f60270259d7a1cbae1398;e4569d5be822daf8bd7e2c0fdd210d3a 1313 142919921 50718dbb53147d495524152e7aa972aa;f0dddfa2e648470c724a98b5f06fc6c7 SAMEA5785953 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530786/ERR3530786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530786/ERR3530786_2.fastq.gz 1687942 WGS 717992 RANDOM 105737377;106769391 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 628ac11663229f6251ab6b1b0b8d8389 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530786/ERR3530786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530786/ERR3530786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530786/717992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530786/717992.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530786/ERR3530786_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530786/ERR3530786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530786/717992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530786/717992.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101196765;102221920 ERS3756095 ERX3549072 GENOMIC 331134584 2019-09-19 717992 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530786/717992.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530786/717992.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530786 717992 ERR3530789 721018 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530789 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530789 b0d1ebf8b7d872b24c3ca6d0b8e07680;6df7043a94a7b4f660b99886e877873d 1313 88567403 c4499371981794836bc1eb1b2861cf8e;e481723d50df2f809a6808022a6456df SAMEA5785791 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530789/ERR3530789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530789/ERR3530789_2.fastq.gz 930387 WGS 721018 RANDOM 63632012;64431156 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 556def1dec7d244d5dece21d4c5d922f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530789/ERR3530789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530789/ERR3530789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530789/721018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530789/721018.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530789/ERR3530789_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530789/ERR3530789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530789/721018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530789/721018.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 61272759;62060594 ERS3755934 ERX3548911 GENOMIC 180420207 2019-09-19 721018 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530789/721018.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530789/721018.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530789 721018 ERR3530793 759516 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530793 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530793 cd9016b80a09ed35747e7c0ac3815c69;8ff25e4aaf9bd67d2e5897d982a4c27f 1313 151552755 b6f7a1ab99f8a88c8a9e13886ec36b91;f11149af82c9ab78d418a0393cb9f910 SAMEA5785491 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530793/ERR3530793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530793/ERR3530793_2.fastq.gz 1797961 WGS 759516 RANDOM 111402120;114450676 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 48bc738e71952959fe2ef23b0ea4ba21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530793/ERR3530793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530793/ERR3530793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530793/759516.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530793/759516.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530793/ERR3530793_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530793/ERR3530793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530793/759516.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530793/759516.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106581261;109623962 ERS3755634 ERX3548611 GENOMIC 356919020 2019-09-19 759516 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530793/759516.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530793/759516.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530793 759516 ERR3530792 667373 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530792 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530792 b4f86a55e9ceac57b25fcf242b5d3994;c82ab419079c007f2dc88e69e13547f6 1313 182173876 056be08c177dcb9e132bdf6b1b7b246c;453fd0a70190a6f111ff4d0c6c74e747 SAMEA5786065 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530792/ERR3530792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530792/ERR3530792_2.fastq.gz 1920361 WGS 667373 RANDOM 129523503;135257493 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9fe15bd2f4c6c0c8853590b86144dc60 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530792/ERR3530792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530792/ERR3530792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530792/667373.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530792/667373.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530792/ERR3530792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530792/ERR3530792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530792/667373.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530792/667373.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124475653;130117068 ERS3756207 ERX3549184 GENOMIC 381106289 2019-09-19 667373 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530792/667373.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530792/667373.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530792 667373 ERR3530885 760591 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530885 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530885 74b1259bbf9bcd20c762074f0c38458d;325192dd4e0259cb1591c45dc2f2cfcb 1313 98342190 2bcd60f73c1e960601b140ff5d47b3ec;9099f6decc5f8e690cacaaf679a0916c SAMEA5785446 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530885/ERR3530885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530885/ERR3530885_2.fastq.gz 1043590 WGS 760591 RANDOM 70532238;73043530 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bfddb35a79be08d1e00fb307ce9d562d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530885/ERR3530885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530885/ERR3530885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530885/760591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530885/760591.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530885/ERR3530885_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530885/ERR3530885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530885/760591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530885/760591.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 67926224;70389865 ERS3755589 ERX3548566 GENOMIC 208128519 2019-09-19 760591 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530885/760591.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530885/760591.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530885 760591 ERR3530915 756606 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530915 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530915 50a2a66740cd7ab482269c1c0cdfc9c8;36305e82d9138e67be41a638137b9e35 1313 151358544 322875a5ea360264fbc7e7c698469338;7a43ac83c975f8478e6421b6bbf1d687 SAMEA5785671 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530915/ERR3530915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530915/ERR3530915_2.fastq.gz 1624397 WGS 756606 RANDOM 109228961;112081470 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b10290323a292174645e64f693663b5e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530915/ERR3530915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530915/ERR3530915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530915/756606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530915/756606.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530915/ERR3530915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530915/ERR3530915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530915/756606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530915/756606.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104978903;107783680 ERS3755814 ERX3548791 GENOMIC 322686985 2019-09-19 756606 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530915/756606.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530915/756606.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530915 756606 ERR3530923 753443 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530923 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530923 53d7917d9b151ec4c9e330dd689f0fe3;8bc8a7eacd99913e7ec817f4d8d29de9 1313 121557698 cbe1c82625afc09f1cfded54e0040c91;e10ad8d44583a4b335d383901b1a9f08 SAMEA5785747 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530923/ERR3530923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530923/ERR3530923_2.fastq.gz 1353103 WGS 753443 RANDOM 89840918;88896675 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 27170330b1b2eec60de4a0314b0ca5f1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530923/ERR3530923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530923/ERR3530923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530923/753443.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530923/753443.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530923/ERR3530923_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530923/ERR3530923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530923/753443.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530923/753443.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86378762;85448020 ERS3755890 ERX3548867 GENOMIC 268624470 2019-09-19 753443 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530923/753443.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530923/753443.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530923 753443 ERR3530796 756673 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530796 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530796 86c36c1c1c79ddc27b62281110045551;96dcaafaa9cfd8fe1dbcc48b89f9095a 1313 139904863 3088c490a0e1a7a5bfa42891636f6312;7897e78bd67f0ffdeb57046036551e23 SAMEA5785605 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530796/ERR3530796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530796/ERR3530796_2.fastq.gz 1501568 WGS 756673 RANDOM 101158306;103147725 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8ae9423d65ba1c93731539bfe8a1216f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530796/ERR3530796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530796/ERR3530796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530796/756673.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530796/756673.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530796/ERR3530796_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530796/ERR3530796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530796/756673.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530796/756673.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97328539;99267991 ERS3755748 ERX3548725 GENOMIC 298836841 2019-09-19 756673 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530796/756673.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530796/756673.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530796 756673 ERR3530797 308584 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530797 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530797 606f60b30dd05826329ea00649e1cf21;ec977b73b80a525d6eb939f23217c7f5 1313 225653400 46a384659ce89739bfc1332713065cb6;dbcec4b88af834c80948e6e4bbeb8469 SAMEA5786204 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530797/ERR3530797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530797/ERR3530797_2.fastq.gz 2486498 WGS 308584 RANDOM 163723395;166563407 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fc5afac3699f4342b2216c836b603579 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530797/ERR3530797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530797/ERR3530797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530797/308584.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530797/308584.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530797/ERR3530797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530797/ERR3530797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530797/308584.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530797/308584.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 157350562;160186646 ERS3756346 ERX3549323 GENOMIC 493066370 2019-09-19 308584 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530797/308584.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530797/308584.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530797 308584 ERR3530798 753426 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530798 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530798 e5e50bad13f686bb3739f9909db18e77;a45b2e2b7afb80b0d6dcb50fc66aa59b 1313 116437446 db4cb4a43ff7b31e3138aa502230be4c;6e1dec04862d83af6adc40cee6509833 SAMEA5785764 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530798/ERR3530798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530798/ERR3530798_2.fastq.gz 1278646 WGS 753426 RANDOM 83702373;86321342 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 771feee60817c68b75bd6bbd74394c79 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530798/ERR3530798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530798/ERR3530798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530798/753426.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530798/753426.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530798/ERR3530798_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530798/ERR3530798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530798/753426.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530798/753426.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80475885;83103478 ERS3755907 ERX3548884 GENOMIC 251505058 2019-09-19 753426 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530798/753426.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530798/753426.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530798 753426 ERR3530800 300872 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530800 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530800 1a8fe6d32410a09edbaed33e5998b081;1407306c0d6f8a96322d85645ca5fdbc 1313 165802005 3cbb7b2f191fe9cf33a76ebdd867572f;a7347794af986df41a647455556a1ba6 SAMEA5786270 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530800/ERR3530800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530800/ERR3530800_2.fastq.gz 1930183 WGS 300872 RANDOM 118474191;123123080 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c2185975346cc6d618a38156ac0b98af ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530800/ERR3530800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530800/ERR3530800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530800/300872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530800/300872.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530800/ERR3530800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530800/ERR3530800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530800/300872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530800/300872.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113583411;118185685 ERS3756412 ERX3549389 GENOMIC 380994672 2019-09-19 300872 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530800/300872.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530800/300872.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530800 300872 ERR3530799 651029 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530799 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530799 80caa75698922118d31f0ab9ac600746;adc07ec6d783cf900e1c4d6ad83757ca 1313 197469996 9e09059ac60659c1d3614b307fcde1eb;9fea9f78f015dbe1df13505bc9a0a4c6 SAMEA5786118 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530799/ERR3530799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530799/ERR3530799_2.fastq.gz 2191531 WGS 651029 RANDOM 143742965;146779668 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b365a0f6027734b660a6e5f9fbc7062c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530799/ERR3530799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530799/ERR3530799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530799/651029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530799/651029.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530799/ERR3530799_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530799/ERR3530799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530799/651029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530799/651029.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 138082890;141107540 ERS3756260 ERX3549237 GENOMIC 437715889 2019-09-19 651029 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530799/651029.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530799/651029.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530799 651029 ERR3530801 721019 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530801 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530801 e51df74a50e426790c29eb60df4d05fe;9c983d5bc5276460da47b3bdb3e593c3 1313 74767332 6ec5aeb535268786505518ba0f57f8fc;7f0a5c3ea3ab7bcbcccb76f1c4729576 SAMEA5785790 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530801/ERR3530801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530801/ERR3530801_2.fastq.gz 774357 WGS 721019 RANDOM 53769157;54669685 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e2ee004409cec5f83b56fc16642f1265 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530801/ERR3530801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530801/ERR3530801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530801/721019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530801/721019.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530801/ERR3530801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530801/ERR3530801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530801/721019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530801/721019.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 51839318;52718970 ERS3755933 ERX3548910 GENOMIC 153700119 2019-09-19 721019 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530801/721019.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530801/721019.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530801 721019 ERR3530803 717876 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530803 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530803 cc1625a8c8408f9e6bea833efd0cbcf7;75a8a820ea169b8e2f80db46ce2f06ec 1313 166881176 904947ae142d72754097658aef7ed5d8;2a8a3fecb494122b8facca9c47df25d3 SAMEA5786035 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530803/ERR3530803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530803/ERR3530803_2.fastq.gz 1995955 WGS 717876 RANDOM 123728337;125612208 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3e9bac8e839c1c966b2cd260d24153ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530803/ERR3530803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530803/ERR3530803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530803/717876.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530803/717876.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530803/ERR3530803_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530803/ERR3530803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530803/717876.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530803/717876.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118394338;120268385 ERS3756177 ERX3549154 GENOMIC 397001674 2019-09-19 717876 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530803/717876.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530803/717876.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530803 717876 ERR3530802 300853 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530802 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530802 4d82e011d8cccd42c7b88b85e19394dd;25627792e952c7006ef89599ecaf86f4 1313 109544091 92f3925da8d324b7f00f1f30cc69d26b;d434d18b6e6f02c0fa86382ca2f93afa SAMEA5786287 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530802/ERR3530802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530802/ERR3530802_2.fastq.gz 1284418 WGS 300853 RANDOM 78935648;80846391 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ec69c3869d38abc4527a5b993d7a206f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530802/ERR3530802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530802/ERR3530802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530802/300853.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530802/300853.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530802/ERR3530802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530802/ERR3530802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530802/300853.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530802/300853.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75834006;77711219 ERS3756429 ERX3549406 GENOMIC 252282472 2019-09-19 300853 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530802/300853.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530802/300853.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530802 300853 ERR3530805 311481 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530805 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530805 17d9b395574005c1fe0f3c57bf149ad2;0e2c65fe4d2d234597c2c68d2a57d9d9 1313 201555771 098bdc1133fb7af92a253e8aa7c7dd03;5df6464889d8b75cca2d5a33117c6b4e SAMEA5786143 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530805/ERR3530805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530805/ERR3530805_2.fastq.gz 2247687 WGS 311481 RANDOM 146177198;148226715 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bc8ff4226bf73ae9b6ea34bcb48cc442 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530805/ERR3530805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530805/ERR3530805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530805/311481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530805/311481.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530805/ERR3530805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530805/ERR3530805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530805/311481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530805/311481.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140221942;142281095 ERS3756285 ERX3549262 GENOMIC 442521620 2019-09-19 311481 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530805/311481.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530805/311481.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530805 311481 ERR3530804 720979 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530804 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530804 d4db6f773aafde25e332699923dff72c;47d8f46a10c31923ad3cf95417f1397a 1313 351546050 2fa71614858edd7afb8905049c012983;77959e8adc6f2de61abd7617915793f0 SAMEA5785829 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530804/ERR3530804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530804/ERR3530804_2.fastq.gz 3626616 WGS 720979 RANDOM 250564993;256536373 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2eae933cb1718975c3283d50c318b7da ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530804/ERR3530804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530804/ERR3530804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530804/720979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530804/720979.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530804/ERR3530804_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530804/ERR3530804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530804/720979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530804/720979.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 240297908;246192166 ERS3755972 ERX3548949 GENOMIC 719463433 2019-09-19 720979 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530804/720979.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530804/720979.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530804 720979 ERR3530806 308597 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530806 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530806 7a69d4c9f5780ce3998d00e56c45a60c;04a7170c06db0a73f9afbdbad791a0c8 1313 201323577 dfc444f5a9d9bb78618644db23a210c8;da58850a832b246918df25e40523dc65 SAMEA5786192 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530806/ERR3530806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530806/ERR3530806_2.fastq.gz 2228970 WGS 308597 RANDOM 146624668;148056752 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 771b52ad95b03fb531ef1b529d853a33 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530806/ERR3530806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530806/ERR3530806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530806/308597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530806/308597.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530806/ERR3530806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530806/ERR3530806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530806/308597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530806/308597.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 140838396;142254415 ERS3756334 ERX3549311 GENOMIC 440260235 2019-09-19 308597 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530806/308597.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530806/308597.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530806 308597 ERR3530942 756669 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530942 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530942 6fefef137a03d554b5aca0dc1e5f8b8c;9e79362cb69bf1fc01b9039bfa09d770 1313 148293581 03e903505a46e0916dc7b5385f847d4f;6b651ea4a472a29f8d996873e0f7f043 SAMEA5785609 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530942/ERR3530942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530942/ERR3530942_2.fastq.gz 1591220 WGS 756669 RANDOM 106407575;110301471 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1de7bd0eb41a4dbc71b4494b1d1e070e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530942/ERR3530942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530942/ERR3530942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530942/756669.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530942/756669.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530942/ERR3530942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530942/ERR3530942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530942/756669.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530942/756669.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102280041;106102042 ERS3755752 ERX3548729 GENOMIC 316394208 2019-09-19 756669 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530942/756669.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530942/756669.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530942 756669 ERR3530944 756678 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530944 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530944 65f7086d1fef6aebfe6f530ecfbe9cb8;cd2171036eb5cf3c91afea7d440e06aa 1313 127084897 e1b8c63ec8dd2fe590b68c7f7f845df5;6d6175811aad739dd43bc2f2b66f8a56 SAMEA5785600 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530944/ERR3530944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530944/ERR3530944_2.fastq.gz 1363712 WGS 756678 RANDOM 91523802;94178981 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e27057a34f635be13c0aa325a063d907 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530944/ERR3530944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530944/ERR3530944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530944/756678.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530944/756678.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530944/ERR3530944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530944/ERR3530944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530944/756678.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530944/756678.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88082670;90693204 ERS3755743 ERX3548720 GENOMIC 271171232 2019-09-19 756678 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530944/756678.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530944/756678.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530944 756678 ERR3530809 717955 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530809 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530809 26694208870335bdfc924b6b1c1e6367;31dacf9146f8747b1083d61f9faa09e9 1313 149746609 84b3286b565096b97146f03df6be5760;e8c8d94a4da2baf97812d48d9f90c57d SAMEA5785985 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530809/ERR3530809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530809/ERR3530809_2.fastq.gz 1788917 WGS 717955 RANDOM 111096863;112106402 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 23e31f646d1d13e1cffae9edaa33d0c7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530809/ERR3530809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530809/ERR3530809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530809/717955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530809/717955.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530809/ERR3530809_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530809/ERR3530809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530809/717955.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530809/717955.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106272854;107279265 ERS3756127 ERX3549104 GENOMIC 350720123 2019-09-19 717955 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530809/717955.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530809/717955.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530809 717955 ERR3530810 667368 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530810 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530810 77c31846a97aab29ef385c93baf0225d;f3870a2657e16905215d77ac01ede357 1313 218561351 53a08e8807cb660cb09f115d750d417f;dd3b2be7b7918ebbd8ce39ed877ce188 SAMEA5786069 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530810/ERR3530810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530810/ERR3530810_2.fastq.gz 2341453 WGS 667368 RANDOM 157696643;160945093 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b4c950d9cfaab58ff5db9621ae786f7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530810/ERR3530810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530810/ERR3530810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530810/667368.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530810/667368.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530810/ERR3530810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530810/ERR3530810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530810/667368.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530810/667368.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 151705456;154915342 ERS3756211 ERX3549188 GENOMIC 465582212 2019-09-19 667368 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530810/667368.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530810/667368.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530810 667368 ERR3530811 756682 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530811 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530811 2471bc85994e1d382673b4b990acdce2;7e5d7a9d1bf9e7c2c93aeaf415c4e028 1313 197787434 9c8cddaf3c69085ce04ac551541a47dd;93ac9c153b713246b92bc20198bc610c SAMEA5785596 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530811/ERR3530811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530811/ERR3530811_2.fastq.gz 2126492 WGS 756682 RANDOM 142130822;146429319 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d4598938254feee065bc3ebf61246a88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530811/ERR3530811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530811/ERR3530811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530811/756682.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530811/756682.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530811/ERR3530811_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530811/ERR3530811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530811/756682.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530811/756682.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136595436;140839733 ERS3755739 ERX3548716 GENOMIC 422723036 2019-09-19 756682 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530811/756682.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530811/756682.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530811 756682 ERR3530812 758012 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530812 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530812 912e5acef53bab18917a1cfc9f9d6842;cddce1d3219cdefe2ad179780d724309 1313 116503807 06c6599d32499db3d1c87ad77b24652a;226d301f107c8674e16b39ad9398460f SAMEA5785519 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530812/ERR3530812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530812/ERR3530812_2.fastq.gz 1402093 WGS 758012 RANDOM 85092664;89247280 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4d4e654aba77febbe1f8a61fcdffe0eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530812/ERR3530812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530812/ERR3530812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530812/758012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530812/758012.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530812/ERR3530812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530812/ERR3530812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530812/758012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530812/758012.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81501199;85646829 ERS3755662 ERX3548639 GENOMIC 278791756 2019-09-19 758012 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530812/758012.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530812/758012.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530812 758012 ERR3530951 753424 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530951 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530951 87a15d71a116e4661a09c0cbd381565a;03d88a9fbf409a0d66fe8557a1e36582 1313 79962551 05c94c97f7fcc5f838356eff094704f8;0ce3ed322e23742373c2d2c9a53ef6ef SAMEA5785766 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530951/ERR3530951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530951/ERR3530951_2.fastq.gz 872201 WGS 753424 RANDOM 57484760;59484820 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fd32c8693c7318de3cf940f41b204598 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530951/ERR3530951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530951/ERR3530951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530951/753424.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530951/753424.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530951/ERR3530951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530951/ERR3530951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530951/753424.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530951/753424.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 55301738;57298739 ERS3755909 ERX3548886 GENOMIC 172464261 2019-09-19 753424 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530951/753424.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530951/753424.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530951 753424 ERR3530814 720255 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530814 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530814 d20b4f61a2ef4e9509debaa6a6f67979;f15a707ad630a3d04e6ea5df4aca6f2c 1313 115216826 5e9b5ed5ddb1c5bd111744db71ea2827;ba6d185ff01ca9c5b793fefa0b29c6cb SAMEA5785879 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530814/ERR3530814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530814/ERR3530814_2.fastq.gz 1279650 WGS 720255 RANDOM 83819179;85490092 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4021ee3d8e016224b42914c0a4aa3f45 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530814/ERR3530814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530814/ERR3530814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530814/720255.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530814/720255.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530814/ERR3530814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530814/ERR3530814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530814/720255.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530814/720255.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80551739;82219486 ERS3756022 ERX3548999 GENOMIC 254251625 2019-09-19 720255 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530814/720255.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530814/720255.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530814 720255 ERR3530815 756620 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530815 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530815 1f538155d1ff56490223731080a4edbb;bf4df7c668a8dd82b08b3cc8a53c9f84 1313 177859759 47aa98af9b18113f920d4a09be42d384;b22834d0d0872b2aedd4337c61339ca4 SAMEA5785657 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530815/ERR3530815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530815/ERR3530815_2.fastq.gz 1928781 WGS 756620 RANDOM 129440121;131191730 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. df95d7d99aa2a550eea552bfa714f6dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530815/ERR3530815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530815/ERR3530815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530815/756620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530815/756620.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530815/ERR3530815_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530815/ERR3530815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530815/756620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530815/756620.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124356202;126081375 ERS3755800 ERX3548777 GENOMIC 383866537 2019-09-19 756620 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530815/756620.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530815/756620.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530815 756620 ERR3530816 651546 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530816 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530816 d9f79213c4f0c488ab2526e327152463;67096cd231e190ae70d293ceb809559b 1313 187285229 e0ec3f02841a0c26d58002b5fcce26a4;8a47a396c9286dee42d512554d5e1949 SAMEA5786107 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530816/ERR3530816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530816/ERR3530816_2.fastq.gz 2219722 WGS 651546 RANDOM 136020632;142688722 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b1537622911536b999962cff69a9e1fd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530816/ERR3530816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530816/ERR3530816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530816/651546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530816/651546.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530816/ERR3530816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530816/ERR3530816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530816/651546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530816/651546.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130184642;136846015 ERS3756249 ERX3549226 GENOMIC 442942346 2019-09-19 651546 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530816/651546.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530816/651546.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530816 651546 ERR3530819 753461 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530819 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530819 86107020872025a8915d47f431106a6b;7d5fb56e6a9a2c05aecc29fb3b72d45b 1313 120524934 e596f2b4fbac784384a38ede17eba14d;1da6de0c68d6235a2ed3ec76d085592b SAMEA5785729 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530819/ERR3530819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530819/ERR3530819_2.fastq.gz 1330805 WGS 753461 RANDOM 87747248;88792274 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 634f48d4c1107784a6035a736354c3df ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530819/ERR3530819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530819/ERR3530819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530819/753461.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530819/753461.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530819/ERR3530819_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530819/ERR3530819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530819/753461.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530819/753461.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84388241;85437867 ERS3755872 ERX3548849 GENOMIC 262039637 2019-09-19 753461 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530819/753461.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530819/753461.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530819 753461 ERR3530817 753464 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530817 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530817 85af559f09ae84d2ad2ab7285b207ef0;cd2eba3e4c28994138c416ef93651798 1313 351123019 ea6557a1bd1e52edb781101e5738760c;a05a8d22f61c32b746e35660c26c6cb5 SAMEA5785726 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530817/ERR3530817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530817/ERR3530817_2.fastq.gz 3814759 WGS 753464 RANDOM 250219970;261841519 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 33ba001594189f1e1317cc4ee65c904c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530817/ERR3530817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530817/ERR3530817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530817/753464.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530817/753464.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530817/ERR3530817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530817/ERR3530817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530817/753464.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530817/753464.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 239498394;251128616 ERS3755869 ERX3548846 GENOMIC 758535338 2019-09-19 753464 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530817/753464.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530817/753464.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530817 753464 ERR3530956 756608 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530956 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530956 31005081260a2bb20e6de7619490d85f;43f8999776aa04ada1da4245868c8a44 1313 125107228 626696ce5c703d375971ff26fb62ab27;37cb358626949fe068267b8d3460ec82 SAMEA5785669 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530956/ERR3530956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530956/ERR3530956_2.fastq.gz 1325408 WGS 756608 RANDOM 88276368;93343297 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c57bf514e1ab3f536374362717336060 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530956/ERR3530956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530956/ERR3530956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530956/756608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530956/756608.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530956/ERR3530956_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530956/ERR3530956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530956/756608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530956/756608.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84955635;89938158 ERS3755812 ERX3548789 GENOMIC 263146546 2019-09-19 756608 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530956/756608.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530956/756608.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530956 756608 ERR3530820 728419 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530820 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530820 c7b3eda3465053a293bf5d1ce3d1346d;230ababfc8de35824a91e052a2b0512e 1313 114352777 2cc9a093e3b1d0078df7452870f747d1;7699e8ac7b55dc265adafe7aeef4cbce SAMEA5785785 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530820/ERR3530820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530820/ERR3530820_2.fastq.gz 1227433 WGS 728419 RANDOM 83019530;84293377 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7b224629623138045c7a590c6e16a532 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530820/ERR3530820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530820/ERR3530820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530820/728419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530820/728419.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530820/ERR3530820_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530820/ERR3530820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530820/728419.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530820/728419.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79969475;81230369 ERS3755928 ERX3548905 GENOMIC 243931027 2019-09-19 728419 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530820/728419.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530820/728419.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530820 728419 ERR3530821 717860 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530821 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530821 e0b5395e5021cf90d4d9d858f2d7308d;78283f443f5fca06e7ae5e0acc04d61c 1313 126736004 845a6bc497d2792dbaf73b8744da42c7;f8e1df88bfe7adb3b06008458d7bde0c SAMEA5786041 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530821/ERR3530821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530821/ERR3530821_2.fastq.gz 1483623 WGS 717860 RANDOM 92798106;95633321 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 828bcca4c390a92dd4fa9ddfdd8041f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530821/ERR3530821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530821/ERR3530821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530821/717860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530821/717860.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530821/ERR3530821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530821/ERR3530821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530821/717860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530821/717860.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88956485;91777809 ERS3756183 ERX3549160 GENOMIC 296000153 2019-09-19 717860 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530821/717860.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530821/717860.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530821 717860 ERR3530822 300851 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530822 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530822 73e9ce60b6d701814938e21bb59f6bbe;033101e8ae862c4a4c10d2326a23df53 1313 103445156 85872f712dab308c286a1ea31860308a;0e73d3d4cd084c90c4031d9f71842fa2 SAMEA5786289 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530822/ERR3530822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530822/ERR3530822_2.fastq.gz 1210238 WGS 300851 RANDOM 75076938;76073528 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e08a4f351987ed1d0d325a934180bca1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530822/ERR3530822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530822/ERR3530822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530822/300851.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530822/300851.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530822/ERR3530822_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530822/ERR3530822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530822/300851.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530822/300851.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 72176352;73151660 ERS3756431 ERX3549408 GENOMIC 239816012 2019-09-19 300851 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530822/300851.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530822/300851.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530822 300851 ERR3530823 720960 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530823 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530823 54ad6866c805e3d72c0484f185dfbbeb;f66bfaaaa85e402176c30a830cbba7e7 1313 114391492 e6df5ffa675094f51a0db2d691e67bad;9e55bb533e0af9fa9556297b7a2db5b4 SAMEA5785848 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530823/ERR3530823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530823/ERR3530823_2.fastq.gz 1193140 WGS 720960 RANDOM 82499070;83355602 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8d8baf55ac245b9353fd300f1dbdd4a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530823/ERR3530823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530823/ERR3530823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530823/720960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530823/720960.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530823/ERR3530823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530823/ERR3530823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530823/720960.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530823/720960.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79511938;80349242 ERS3755991 ERX3548968 GENOMIC 236465006 2019-09-19 720960 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530823/720960.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530823/720960.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530823 720960 ERR3530966 720971 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530966 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530966 d400f7117c119c4b0901963ce37e9562;727a7631e64e1ee13d4bf06d76ed4b71 1313 244437680 a5efa8c01680ef1fe17cf58e120cbd69;5f27f472a33821901615d43fc6f78a50 SAMEA5785837 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530966/ERR3530966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530966/ERR3530966_2.fastq.gz 2552885 WGS 720971 RANDOM 175523082;177367515 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 400a0e86debb4dd500309c8074db8023 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530966/ERR3530966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530966/ERR3530966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530966/720971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530966/720971.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530966/ERR3530966_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530966/ERR3530966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530966/720971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530966/720971.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 168984771;170806591 ERS3755980 ERX3548957 GENOMIC 505469321 2019-09-19 720971 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530966/720971.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530966/720971.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530966 720971 ERR3530825 756676 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530825 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530825 3465ce7b33e430efd16a962d123b16aa;073296870773226869665e6902c8042b 1313 174933132 e8fb1a38894ad8e1bdb2e7a540881c02;592c5469adfeddf4610baf9a4f855735 SAMEA5785602 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530825/ERR3530825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530825/ERR3530825_2.fastq.gz 1868852 WGS 756676 RANDOM 126037611;129530793 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 13d348521102a2cd578defe460d7c8e8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530825/ERR3530825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530825/ERR3530825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530825/756676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530825/756676.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530825/ERR3530825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530825/ERR3530825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530825/756676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530825/756676.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 121082141;124519172 ERS3755745 ERX3548722 GENOMIC 372266141 2019-09-19 756676 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530825/756676.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530825/756676.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530825 756676 ERR3530826 758000 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530826 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530826 c9f6202778ab452bd68d886711b852d9;5e04711200d4701a50b272b85e86c4f4 1313 140528385 59fb7bb28e499248e119321e9b6323c8;3734d72a5b9963cb1588b8b85f3aa6a8 SAMEA5785530 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530826/ERR3530826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530826/ERR3530826_2.fastq.gz 1705180 WGS 758000 RANDOM 104010977;106557882 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5f993d0dc8ed778f31c6b41029d578a5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530826/ERR3530826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530826/ERR3530826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530826/758000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530826/758000.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530826/ERR3530826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530826/ERR3530826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530826/758000.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530826/758000.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99460267;101996800 ERS3755673 ERX3548650 GENOMIC 337200240 2019-09-19 758000 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530826/758000.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530826/758000.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530826 758000 ERR3530827 308628 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530827 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530827 ac0f2730da44fbe0de96dc836012344c;cef3434afa38362de3132a94a7337fb7 1313 184441984 a31abdd3954155a6c2aa175df03478af;e410fdf65829b945b743ae65ff3b2f56 SAMEA5786166 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530827/ERR3530827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530827/ERR3530827_2.fastq.gz 2050915 WGS 308628 RANDOM 134141862;136362284 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0c04dbc13e5a0ec154d34e1a210f8020 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530827/ERR3530827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530827/ERR3530827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530827/308628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530827/308628.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530827/ERR3530827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530827/ERR3530827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530827/308628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530827/308628.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 128753618;130967254 ERS3756308 ERX3549285 GENOMIC 403045840 2019-09-19 308628 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530827/308628.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530827/308628.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530827 308628 ERR3530969 720190 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530969 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530969 6cfc761d3a1c9968cc3224ef761156f3;83103a27acfe31e3c26913e7de80690f 1313 196477796 031f5492ecd8d067be5f950406809094;4dcd6e21ec9d5dfd4fe6b233d5139ae4 SAMEA5785945 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530969/ERR3530969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530969/ERR3530969_2.fastq.gz 2216704 WGS 720190 RANDOM 144249811;144755255 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3aa2f80532f80c2c959b6fba39396fc3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530969/ERR3530969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530969/ERR3530969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530969/720190.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530969/720190.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530969/ERR3530969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530969/ERR3530969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530969/720190.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530969/720190.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 138450212;138949945 ERS3756087 ERX3549064 GENOMIC 438633458 2019-09-19 720190 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530969/720190.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530969/720190.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530969 720190 ERR3530829 760602 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530829 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530829 40e8999c3d293110057312e847953a24;c6197d8f72ff41eb48d6c3b1b89e4647 1313 173419598 6cf728e8bdb33996c669c9b8ef3a75be;49fd2b26e70952c76a903bac13498564 SAMEA5785435 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530829/ERR3530829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530829/ERR3530829_2.fastq.gz 1878397 WGS 760602 RANDOM 124439503;129643945 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 195896ed29ff2c3b67405d915ac56757 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530829/ERR3530829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530829/ERR3530829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530829/760602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530829/760602.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530829/ERR3530829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530829/ERR3530829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530829/760602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530829/760602.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119549170;124700653 ERS3755578 ERX3548555 GENOMIC 373782182 2019-09-19 760602 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530829/760602.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530829/760602.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530829 760602 ERR3530830 717958 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530830 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530830 2850f0ae1deeddcf79d382dc60252846;5e93ff4682b18f0532ab73a59d48ec8e 1313 167526916 0e245c52467cda6fcb47ea28cc7c5504;a797bc083b406870905c36433d4cf6d4 SAMEA5785982 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530830/ERR3530830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530830/ERR3530830_2.fastq.gz 2011773 WGS 717958 RANDOM 124330641;125860238 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0f10b96528a4ff88bb8b65a738a265ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530830/ERR3530830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530830/ERR3530830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530830/717958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530830/717958.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530830/ERR3530830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530830/ERR3530830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530830/717958.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530830/717958.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118963176;120490461 ERS3756124 ERX3549101 GENOMIC 398800686 2019-09-19 717958 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530830/717958.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530830/717958.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530830 717958 ERR3530831 720246 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530831 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530831 de01e2ff27f770b0a9da3704e835ff4f;0aeb586986b66d0066c8129e4dd5cd05 1313 133210457 91290956ccd50c8add3e54c4c2a6c030;6373ba319b6a48689ffbd4ccee1a839f SAMEA5785888 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530831/ERR3530831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530831/ERR3530831_2.fastq.gz 1463449 WGS 720246 RANDOM 95642726;99220060 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 877827f02015fee8b5c262f9f883d7a5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530831/ERR3530831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530831/ERR3530831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530831/720246.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530831/720246.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530831/ERR3530831_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530831/ERR3530831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530831/720246.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530831/720246.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91847305;95402417 ERS3756031 ERX3549008 GENOMIC 290193646 2019-09-19 720246 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530831/720246.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530831/720246.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530831 720246 ERR3530833 757962 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530833 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530833 b81016e6eea8aa60113067b4e822d915;c5abbd5afb1c95d0ffeb9a4d9328183f 1313 86084646 47aa37d6894407b50ebe222d23b60817;3cd2104436f3c4a38ef24bca2e13b1ad SAMEA5785568 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530833/ERR3530833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530833/ERR3530833_2.fastq.gz 1030432 WGS 757962 RANDOM 63563773;65360313 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e32d1648112326f46c8c6f73f97a931d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530833/ERR3530833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530833/ERR3530833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530833/757962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530833/757962.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530833/ERR3530833_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530833/ERR3530833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530833/757962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530833/757962.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60935826;62735687 ERS3755711 ERX3548688 GENOMIC 205016910 2019-09-19 757962 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530833/757962.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530833/757962.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530833 757962 ERR3530834 300848 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530834 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530834 99f44fd7604a3686e09b04221542ab6b;d1bbc34b12c25723f846ab3725febe4e 1313 128733146 ac999ddc2081996d7f4d14d0e7b3fb2f;e3841085cccf2a919197e0de44c03270 SAMEA5786292 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530834/ERR3530834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530834/ERR3530834_2.fastq.gz 1482370 WGS 300848 RANDOM 91813283;95611893 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3f861200a9ab10af2516e67a3bc70b59 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530834/ERR3530834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530834/ERR3530834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530834/300848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530834/300848.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530834/ERR3530834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530834/ERR3530834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530834/300848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530834/300848.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88181397;91927370 ERS3756434 ERX3549411 GENOMIC 292854980 2019-09-19 300848 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530834/300848.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530834/300848.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530834 300848 ERR3530832 758016 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530832 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530832 2a25479e0f4fba314cbebceccdc986ff;a1637ad433a536bf9dd98388f612ff5a 1313 93540419 ef171f6448e19ddf18ddde65c57a218a;56c734ff769054c26219087e85cc9776 SAMEA5785515 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530832/ERR3530832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530832/ERR3530832_2.fastq.gz 1129897 WGS 758016 RANDOM 68909607;70929077 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 42f9183cee50b7055cc1714219412359 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530832/ERR3530832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530832/ERR3530832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530832/758016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530832/758016.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530832/ERR3530832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530832/ERR3530832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530832/758016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530832/758016.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66034634;68050699 ERS3755658 ERX3548635 GENOMIC 221942515 2019-09-19 758016 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530832/758016.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530832/758016.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530832 758016 ERR3530971 758006 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530971 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530971 91b0c27f99fb298ea04ecd6256b8c6ee;769229cdd5672b513eec69667b711ed8 1313 87663493 8bebee0517bd3f51794d1492a7752552;f223d0d8ac18b733356b7b37bb85adc7 SAMEA5785525 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530971/ERR3530971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530971/ERR3530971_2.fastq.gz 1031934 WGS 758006 RANDOM 64054061;66535810 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3aa958838624ba5368fbc3ef9cfeb269 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530971/ERR3530971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530971/ERR3530971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530971/758006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530971/758006.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530971/ERR3530971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530971/ERR3530971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530971/758006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530971/758006.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 61396876;63874363 ERS3755668 ERX3548645 GENOMIC 204086495 2019-09-19 758006 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530971/758006.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530971/758006.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530971 758006 ERR3530839 720998 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530839 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530839 88f05db2b8db2687dec4d9036a395c4c;2c8a1d7713dea2a8a90d6e8e09ffc22b 1313 363730570 cf95342b00032358f9c7707926ded122;7c1cb028233f69999c4c8e66c4cb1e6d SAMEA5785811 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530839/ERR3530839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530839/ERR3530839_2.fastq.gz 3809546 WGS 720998 RANDOM 262705018;264766952 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ba7c75a19c5e0d19bc1e7844b7251993 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530839/ERR3530839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530839/ERR3530839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530839/720998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530839/720998.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530839/ERR3530839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530839/ERR3530839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530839/720998.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530839/720998.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 251880970;253920932 ERS3755954 ERX3548931 GENOMIC 755407165 2019-09-19 720998 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530839/720998.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530839/720998.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530839 720998 ERR3530837 755706 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530837 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530837 bceeb9db606eb6fabe4feace9a8e4365;fa067bfb92107414df2e3a75f16c83e9 1313 164533460 e10a8f09ae2f396ec0fe27efe4f29a1f;f1932f0e2ca60bee9e72fde5dc9e71ce SAMEA5785685 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530837/ERR3530837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530837/ERR3530837_2.fastq.gz 1902615 WGS 755706 RANDOM 119617720;123847499 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9b86606fda3418c4c507abe86c718bef ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530837/ERR3530837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530837/ERR3530837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530837/755706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530837/755706.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530837/ERR3530837_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530837/ERR3530837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530837/755706.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530837/755706.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114555945;118794365 ERS3755828 ERX3548805 GENOMIC 377338655 2019-09-19 755706 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530837/755706.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530837/755706.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530837 755706 ERR3530840 717912 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530840 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530840 1d0cb5b26a932e3d9c29c1e3c8cde3f3;9a0acb29dfaa490ad4c85cf707ea1bf7 1313 169404397 10491c5b97797496a37a403405586c1b;7453b906f096c897f112154edab44528 SAMEA5786017 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530840/ERR3530840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530840/ERR3530840_2.fastq.gz 2045451 WGS 717912 RANDOM 125299930;127054596 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8792de5797d082c626361ab9d2f316f8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530840/ERR3530840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530840/ERR3530840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530840/717912.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530840/717912.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530840/ERR3530840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530840/ERR3530840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530840/717912.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530840/717912.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119800550;121548006 ERS3756159 ERX3549136 GENOMIC 397982782 2019-09-19 717912 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530840/717912.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530840/717912.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530840 717912 ERR3530838 717872 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530838 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530838 e911e093ce74adc2e17c2d27622aa663;70a17a01ae874cd3acdf751d91f7174a 1313 101514313 f8d52b11010b7231ea186865777dbbc4;b0afdbe1ca6694a878bd63db19ca5c7c SAMEA5786037 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530838/ERR3530838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530838/ERR3530838_2.fastq.gz 1201960 WGS 717872 RANDOM 74903180;76592058 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f33b434df66538b85963ba511347e914 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530838/ERR3530838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530838/ERR3530838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530838/717872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530838/717872.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530838/ERR3530838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530838/ERR3530838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530838/717872.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530838/717872.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71838482;73515213 ERS3756179 ERX3549156 GENOMIC 240033819 2019-09-19 717872 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530838/717872.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530838/717872.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530838 717872 ERR3530836 753489 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530836 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530836 aa579428d978f61fa032e310a5e12e63;6f95235cea07f3d9839f7bfd92c50918 1313 126378083 87cefc015c4d83e61053870514293510;966524351697966e8f0830bbd42928d8 SAMEA5785703 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530836/ERR3530836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530836/ERR3530836_2.fastq.gz 1396921 WGS 753489 RANDOM 92683241;93153716 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2d161ee9953732060f5fd70dbdb7c66a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530836/ERR3530836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530836/ERR3530836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530836/753489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530836/753489.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530836/ERR3530836_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530836/ERR3530836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530836/753489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530836/753489.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89154711;89625651 ERS3755846 ERX3548823 GENOMIC 278313334 2019-09-19 753489 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530836/753489.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530836/753489.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530836 753489 ERR3530843 720983 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530843 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530843 da56183ec0f523c5f7f8c4061b5a932e;8c5e2ea0aa21f644477d5248e53d0368 1313 163941781 39f3b07787cb2d487a75945ddf0d459f;cdf998de00913f39cc02bea5f9964afa SAMEA5785825 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530843/ERR3530843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530843/ERR3530843_2.fastq.gz 1702626 WGS 720983 RANDOM 117455701;119822466 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 78dbd5ca2a614efc834977171c15ab05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530843/ERR3530843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530843/ERR3530843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530843/720983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530843/720983.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530843/ERR3530843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530843/ERR3530843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530843/720983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530843/720983.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112945510;115274442 ERS3755968 ERX3548945 GENOMIC 337287553 2019-09-19 720983 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530843/720983.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530843/720983.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530843 720983 ERR3530842 304265 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530842 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530842 694443abb97f4a2ea3fae51f64f397a7;c785652502ece01239a420b11f838338 1313 144163436 b893510aeaf068abd917d59ee329f890;7e6505d9505da5cc10320c9461c18961 SAMEA5786259 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530842/ERR3530842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530842/ERR3530842_2.fastq.gz 1667714 WGS 304265 RANDOM 106460557;107402773 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bb842376701426ea9d2fbd072da187c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530842/ERR3530842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530842/ERR3530842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530842/304265.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530842/304265.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530842/ERR3530842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530842/ERR3530842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530842/304265.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530842/304265.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102105649;103030489 ERS3756401 ERX3549378 GENOMIC 332294970 2019-09-19 304265 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530842/304265.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530842/304265.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530842 304265 ERR3530841 660130 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530841 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530841 36d308842235a09883d208e0ba9ad7f7;2c2791fcdcd67a44ffd63da38928cc6b 1313 158191590 1edbb96a879af00f65b7bf1bfdd07158;8988f88bf177990ebac265ceecb04a96 SAMEA5786078 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530841/ERR3530841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530841/ERR3530841_2.fastq.gz 1831969 WGS 660130 RANDOM 114411178;120315694 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bfced2878b91e33e236d963b47c8e5c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530841/ERR3530841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530841/ERR3530841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530841/660130.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530841/660130.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530841/ERR3530841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530841/ERR3530841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530841/660130.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530841/660130.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109515159;115421421 ERS3756220 ERX3549197 GENOMIC 365598394 2019-09-19 660130 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530841/660130.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530841/660130.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530841 660130 ERR3530845 717977 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530845 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530845 e702209958174b5dacca2a7fb578d447;f1bb62f2b598a7c9e3d3ff5cc04c08f8 1313 116853585 b96aef15b8a22abb4ba5a96f87cd14d2;e5cb24ea2fdc143b78999122b7b66064 SAMEA5785964 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530845/ERR3530845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530845/ERR3530845_2.fastq.gz 1333114 WGS 717977 RANDOM 84303701;87915244 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9f153d5ba1c2cddfb5be520c7476b3fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530845/ERR3530845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530845/ERR3530845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530845/717977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530845/717977.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530845/ERR3530845_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530845/ERR3530845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530845/717977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530845/717977.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80870547;84470951 ERS3756106 ERX3549083 GENOMIC 263372286 2019-09-19 717977 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530845/717977.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530845/717977.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530845 717977 ERR3530844 753436 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530844 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530844 545b56037ec703d205c44774296a5eb9;d2cd4d343abd925dec244c9846f5292f 1313 40646934 ce2c930a526aa9b952907bea9cff582b;e54f933327301e7bf18c9905548f84d4 SAMEA5785754 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530844/ERR3530844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530844/ERR3530844_2.fastq.gz 463951 WGS 753436 RANDOM 30234771;29757704 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d28bad5b1861af66a5d4960f21f963bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530844/ERR3530844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530844/ERR3530844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530844/753436.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530844/753436.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530844/ERR3530844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530844/ERR3530844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530844/753436.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530844/753436.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 29079067;28615227 ERS3755897 ERX3548874 GENOMIC 89261904 2019-09-19 753436 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530844/753436.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530844/753436.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530844 753436 ERR3530846 308606 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530846 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530846 1d389320b917a6c730ac68e6a2dee9e7;a483918dba89cd24c8d926bc00b1ffd0 1313 169205999 28a5dcf71eae7212f93682538bef788a;6d1dbf427f6737ce249356866e4a6429 SAMEA5786184 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530846/ERR3530846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530846/ERR3530846_2.fastq.gz 1860922 WGS 308606 RANDOM 123104378;125283375 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ab279baa91c49d28482e1b820fe83ad9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530846/ERR3530846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530846/ERR3530846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530846/308606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530846/308606.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530846/ERR3530846_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530846/ERR3530846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530846/308606.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530846/308606.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118136236;120298409 ERS3756326 ERX3549303 GENOMIC 369252049 2019-09-19 308606 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530846/308606.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530846/308606.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530846 308606 ERR3530847 756615 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530847 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530847 697960bb9a05638f82980130f60b2a5c;b6c1e8751e5bd1aa44ab2fdca66ee18f 1313 162958455 5ded639411fc701701853c1175c67cff;f4c8c0463806371a212bc053a654e236 SAMEA5785662 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530847/ERR3530847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530847/ERR3530847_2.fastq.gz 1769939 WGS 756615 RANDOM 118793986;120205335 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 865f7a7d2124d3cb3e55e37664c4472e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530847/ERR3530847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530847/ERR3530847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530847/756615.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530847/756615.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530847/ERR3530847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530847/ERR3530847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530847/756615.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530847/756615.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114147294;115530902 ERS3755805 ERX3548782 GENOMIC 352608353 2019-09-19 756615 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530847/756615.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530847/756615.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530847 756615 ERR3530849 308599 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530849 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530849 7fb9bca63e0aa132851e4f7c7f450899;461b5dd14e1fe6f73297ed010a93f553 1313 336494668 c2e172291281730fe94d144accbd52db;4c91778a33385fe111d33bd79c94f806 SAMEA5786191 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530849/ERR3530849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530849/ERR3530849_2.fastq.gz 3816186 WGS 308599 RANDOM 244081905;247617434 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f3fb431e0d21ac3c533899cdb5a4785a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530849/ERR3530849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530849/ERR3530849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530849/308599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530849/308599.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530849/ERR3530849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530849/ERR3530849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530849/308599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530849/308599.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 233176022;236720414 ERS3756333 ERX3549310 GENOMIC 726589898 2019-09-19 308599 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530849/308599.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530849/308599.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530849 308599 ERR3530848 753450 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530848 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530848 ef9d4817947d94f12b5a5bee42271672;0ded40e295d3bcdef025cb8229e11c98 1313 146578521 b8ef956ffb27824eaa2f35f91359c04c;9fd57538539d87a18e78d13ee7d30935 SAMEA5785740 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530848/ERR3530848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530848/ERR3530848_2.fastq.gz 1637651 WGS 753450 RANDOM 108674031;107532713 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c0d4b36bcfd150f8ec60246127949f26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530848/ERR3530848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530848/ERR3530848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530848/753450.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530848/753450.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530848/ERR3530848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530848/ERR3530848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530848/753450.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530848/753450.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104409417;103277621 ERS3755883 ERX3548860 GENOMIC 325930173 2019-09-19 753450 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530848/753450.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530848/753450.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530848 753450 ERR3530850 717948 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530850 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530850 736b84a8f5c7745a80ec610d8341df87;cf90982051b481eef5c4964027ebb18b 1313 149533305 7d4934bdbc8f6f8b4b18aa01548ce38e;9b996a4087c42d33bc2d9748297b9d95 SAMEA5785992 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530850/ERR3530850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530850/ERR3530850_2.fastq.gz 1794963 WGS 717948 RANDOM 110896433;113068570 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5acb25865dcb524c0f19f0b8d4b410ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530850/ERR3530850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530850/ERR3530850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530850/717948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530850/717948.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530850/ERR3530850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530850/ERR3530850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530850/717948.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530850/717948.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106074972;108239309 ERS3756134 ERX3549111 GENOMIC 358355418 2019-09-19 717948 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530850/717948.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530850/717948.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530850 717948 ERR3530851 720264 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530851 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530851 e6160d2bb7ab20bf82ed976a177f45cd;bbf63d06a81bb7765ebba2caa122be91 1313 70732652 8e8e80cee7a89e888e05e563f91ecde4;337342f34511dc84d1e6f61bcb524e6b SAMEA5785873 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530851/ERR3530851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530851/ERR3530851_2.fastq.gz 785148 WGS 720264 RANDOM 51021620;52707521 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dda28dc29f99ef6df9e67c68da76183e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530851/ERR3530851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530851/ERR3530851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530851/720264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530851/720264.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530851/ERR3530851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530851/ERR3530851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530851/720264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530851/720264.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 49052378;50730140 ERS3756016 ERX3548993 GENOMIC 153955030 2019-09-19 720264 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530851/720264.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530851/720264.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530851 720264 ERR3530852 756625 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530852 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530852 bd76ca40ec26469ae3c80dca4c9e6821;0feeb58a957349a9737eaadae8cd2a80 1313 122120495 e1ca591da04105687b522e93472caacd;4d784cf2c05fab87a3fab7e43c8860dc SAMEA5785652 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530852/ERR3530852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530852/ERR3530852_2.fastq.gz 1290218 WGS 756625 RANDOM 86485429;90972619 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3c4092b319ead5548febca4faa0ee31a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530852/ERR3530852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530852/ERR3530852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530852/756625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530852/756625.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530852/ERR3530852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530852/ERR3530852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530852/756625.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530852/756625.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83247876;87652405 ERS3755795 ERX3548772 GENOMIC 256245987 2019-09-19 756625 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530852/756625.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530852/756625.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530852 756625 ERR3530854 717870 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530854 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530854 72a802772fb2c76a6e09b75d2b5168f1;e32607c38ba2fe111f37b05ec28715f9 1313 183634065 1361eb8a81c8067ac64dc20374b2e1fc;d98e858ae592d555a1a622a4c9d282dc SAMEA5786038 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530854/ERR3530854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530854/ERR3530854_2.fastq.gz 2168827 WGS 717870 RANDOM 135731658;137559169 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6726336941ea2d2f7ae7cd14f9f1e961 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530854/ERR3530854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530854/ERR3530854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530854/717870.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530854/717870.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530854/ERR3530854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530854/ERR3530854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530854/717870.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530854/717870.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130053425;131871038 ERS3756180 ERX3549157 GENOMIC 432070965 2019-09-19 717870 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530854/717870.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530854/717870.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530854 717870 ERR3530855 304264 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530855 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530855 a826c4aeedd60047e9a458c14c5bd222;41ea7fda2c7cdb25c18bf15673ca5e26 1313 156531352 a8575c7de3f691b6e804bf338e325919;d732989ca2d35c6b087b36501ee0ad60 SAMEA5786260 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530855/ERR3530855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530855/ERR3530855_2.fastq.gz 1807296 WGS 304264 RANDOM 114752791;116897266 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 64d8a46cc104bf6269ecf70321cfd6c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530855/ERR3530855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530855/ERR3530855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530855/304264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530855/304264.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530855/ERR3530855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530855/ERR3530855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530855/304264.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530855/304264.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109964092;112102630 ERS3756402 ERX3549379 GENOMIC 358274903 2019-09-19 304264 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530855/304264.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530855/304264.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530855 304264 ERR3530983 757979 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530983 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530983 c16fd1c3655ee96004dc541977df499e;c25f6ea8303b91a4bcd70e08beec6140 1313 166142906 3fb1217eca3695085d624f3e97d0bc06;81f3276e469f4432d6642e0dc668868c SAMEA5785551 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530983/ERR3530983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530983/ERR3530983_2.fastq.gz 1995060 WGS 757979 RANDOM 121758587;126488131 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ecf50fd656c1d49ca63a4472bf738460 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530983/ERR3530983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530983/ERR3530983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530983/757979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530983/757979.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530983/ERR3530983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530983/ERR3530983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530983/757979.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530983/757979.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116416678;121137636 ERS3755694 ERX3548671 GENOMIC 397465509 2019-09-19 757979 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530983/757979.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530983/757979.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530983 757979 ERR3530856 720268 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530856 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530856 226084f2964f08806d25e27a5dc02e4d;d817da9d14ff74beb84bd2b6efe934b1 1313 74333499 62b8a2a7f52dfe760e540c1f13009010;b05b9c87789f0961217a0622cb5097a3 SAMEA5785872 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530856/ERR3530856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530856/ERR3530856_2.fastq.gz 833042 WGS 720268 RANDOM 53803435;55342428 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 371d74358e4adedf6357525f370fddc5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530856/ERR3530856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530856/ERR3530856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530856/720268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530856/720268.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530856/ERR3530856_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530856/ERR3530856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530856/720268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530856/720268.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 51711631;53248248 ERS3756015 ERX3548992 GENOMIC 162288101 2019-09-19 720268 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530856/720268.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530856/720268.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530856 720268 ERR3530857 304278 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530857 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530857 62d258312431a5254f04d87c26a1bb64;31e85bbf8959cba299929bc9425be982 1313 140608137 b87edf3bbf5485cefcdc646d64deeeda;1302fe9b66b73677cae746515cc3c0b5 SAMEA5786247 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530857/ERR3530857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530857/ERR3530857_2.fastq.gz 1627508 WGS 304278 RANDOM 103571940;104888530 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6fa65b1d014f81239779ab0a0134d075 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530857/ERR3530857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530857/ERR3530857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530857/304278.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530857/304278.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530857/ERR3530857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530857/ERR3530857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530857/304278.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530857/304278.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99347814;100653153 ERS3756389 ERX3549366 GENOMIC 322610824 2019-09-19 304278 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530857/304278.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530857/304278.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530857 304278 ERR3530996 759545 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530996 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530996 df9ec50bdf10ebcf4e33b01d16802da9;85c5d08ecfa3ec29b231f235abfa16c3 1313 139683447 f6f36600c40e27772988e03767f0acde;15a5c1ce0e2aa9478ea4d7eaf55e8eee SAMEA5785462 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530996/ERR3530996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530996/ERR3530996_2.fastq.gz 1660354 WGS 759545 RANDOM 102825841;105520369 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 77389b709e528f449c8b6024f14f0bc7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530996/ERR3530996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530996/ERR3530996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530996/759545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530996/759545.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530996/ERR3530996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530996/ERR3530996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530996/759545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530996/759545.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98415950;101102116 ERS3755605 ERX3548582 GENOMIC 330562140 2019-09-19 759545 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530996/759545.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530996/759545.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530996 759545 ERR3530998 760597 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530998 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530998 580d366d5bb850403ce05232c4a5cbdb;f519e5e2fd53aa14c7a9592e36b9c810 1313 142990008 db77b8fe87f8557456e1f5f0828fdaf1;aece779a6dde5bea269ecf6cba50a72a SAMEA5785440 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530998/ERR3530998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530998/ERR3530998_2.fastq.gz 1554678 WGS 760597 RANDOM 103477869;106393851 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5cff2505e274e412e3c59d4cc24ceb71 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530998/ERR3530998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530998/ERR3530998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530998/760597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530998/760597.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530998/ERR3530998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530998/ERR3530998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530998/760597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530998/760597.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99483603;102357801 ERS3755583 ERX3548560 GENOMIC 310170316 2019-09-19 760597 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530998/760597.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530998/760597.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530998 760597 ERR3531001 758026 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531001 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531001 6a6ea0572b89f9632678e9e0df4a2034;ae52d2b4ed870d6ce007742390604700 1313 145156082 4642a74905927cb50bfe22d8c659e9de;43a2f0fd16d2cd52d5515280538a90ed SAMEA5785505 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531001/ERR3531001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531001/ERR3531001_2.fastq.gz 1765029 WGS 758026 RANDOM 106198022;110526479 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4ff175f8fa5223bc12d5028c181b492e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531001/ERR3531001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531001/ERR3531001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531001/758026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531001/758026.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531001/ERR3531001_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531001/ERR3531001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531001/758026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531001/758026.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101478364;105804449 ERS3755648 ERX3548625 GENOMIC 345674116 2019-09-19 758026 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531001/758026.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531001/758026.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531001 758026 ERR3530861 717904 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530861 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530861 b15d17a5264e87b5c558102c6e13958b;2e39ad3533db5a52ef7b7d8810e1aa03 1313 152003072 525b6fb138d81f2d643ae0617636cf97;95d54363695d05fa40b2fe9e5e6fc453 SAMEA5786021 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530861/ERR3530861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530861/ERR3530861_2.fastq.gz 1818436 WGS 717904 RANDOM 112817764;114359979 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ef1ce6dd292cd3bccc9331ab5055ee7b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530861/ERR3530861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530861/ERR3530861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530861/717904.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530861/717904.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530861/ERR3530861_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530861/ERR3530861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530861/717904.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530861/717904.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 107939964;109473709 ERS3756163 ERX3549140 GENOMIC 360918272 2019-09-19 717904 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530861/717904.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530861/717904.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530861 717904 ERR3531002 757980 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531002 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531002 345eb2f94e95b6d85deb695e666fddd8;0837fdda8392ecacd5417e0ca73e41d9 1313 119849855 913e469f10f079abdba2a075d8667a54;2531d0895241241276db2ac90ece38f6 SAMEA5785550 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531002/ERR3531002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531002/ERR3531002_2.fastq.gz 1448812 WGS 757980 RANDOM 88393070;91041509 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d07f51c25af884c06f0275453fb9dc44 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531002/ERR3531002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531002/ERR3531002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531002/757980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531002/757980.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531002/ERR3531002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531002/ERR3531002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531002/757980.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531002/757980.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84621542;87262097 ERS3755693 ERX3548670 GENOMIC 287473583 2019-09-19 757980 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531002/757980.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531002/757980.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531002 757980 ERR3530863 652823 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530863 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530863 a98b53de90207dc285ae049b282a5666;abeb906a731997d9808174ab529e711b 1313 135024461 ac535b76424630361f0bc8a22fed7da8;f6b482c3c335195a18b761a31456a568 SAMEA5786100 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530863/ERR3530863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530863/ERR3530863_2.fastq.gz 1524388 WGS 652823 RANDOM 98654680;101137733 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8097f1ce5b2bd741ea56c6f433e37d65 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530863/ERR3530863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530863/ERR3530863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530863/652823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530863/652823.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530863/ERR3530863_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530863/ERR3530863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530863/652823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530863/652823.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94731655;97206227 ERS3756242 ERX3549219 GENOMIC 304464302 2019-09-19 652823 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530863/652823.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530863/652823.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530863 652823 ERR3530865 293062 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530865 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530865 a19e06fb19dd351c2da5d504933096d4;8fa805564d98c3436a863049d698b9cd 1313 150686403 6f1ed30566cff099992849c1dec314fa;093a8449ba982a4b5d1b8351704446c3 SAMEA5786301 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530865/ERR3530865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530865/ERR3530865_2.fastq.gz 1642858 WGS 293062 RANDOM 105034941;110661053 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c92adad39524b72a04edffbfa0196fb0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530865/ERR3530865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530865/ERR3530865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530865/293062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530865/293062.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530865/ERR3530865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530865/ERR3530865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530865/293062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530865/293062.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100856728;106431596 ERS3756443 ERX3549420 GENOMIC 322501893 2019-09-19 293062 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530865/293062.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530865/293062.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530865 293062 ERR3530864 717962 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530864 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530864 0ac11119f6267021f63df06ee389aa2e;ad10979891151bc244d5f2411a2adb79 1313 164540958 165825547c04c005186279f41923b7c5;0717d4da638431513bd1b2f9e80c15f3 SAMEA5785978 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530864/ERR3530864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530864/ERR3530864_2.fastq.gz 1931794 WGS 717962 RANDOM 120206342;124515932 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 47624d9e6cc091d759138020060b832c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530864/ERR3530864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530864/ERR3530864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530864/717962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530864/717962.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530864/ERR3530864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530864/ERR3530864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530864/717962.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530864/717962.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 115036250;119341967 ERS3756120 ERX3549097 GENOMIC 384034721 2019-09-19 717962 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530864/717962.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530864/717962.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530864 717962 ERR3530866 760316 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530866 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530866 0b5b4c2747f1046da881125e3725d3ec;5850f1305fa15a7f6f6dbcd113fc7e91 1313 159903665 1a13a5767cca47b0302ca41ece63d90a;925d101a085e2fc2fe5cb14b5f5dfd94 SAMEA5785451 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530866/ERR3530866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530866/ERR3530866_2.fastq.gz 1897435 WGS 760316 RANDOM 117933679;120860031 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c266a05652c623bf73f629dcc4ab9309 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530866/ERR3530866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530866/ERR3530866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530866/760316.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530866/760316.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530866/ERR3530866_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530866/ERR3530866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530866/760316.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530866/760316.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112867481;115781149 ERS3755594 ERX3548571 GENOMIC 379133885 2019-09-19 760316 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530866/760316.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530866/760316.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530866 760316 ERR3530867 721001 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530867 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530867 9590b2b61b6dee1e5ee6e2c401d2f0a2;3b91a45a4e178a8a8ebb7f00acbbeca7 1313 242035728 c36ab767c28c608f097fd69aeea872fc;cd12ecfd80bcc9e5807487f6be51a0d3 SAMEA5785808 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530867/ERR3530867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530867/ERR3530867_2.fastq.gz 2522444 WGS 721001 RANDOM 174159089;175313517 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bf256b141f2db3e3c4bcc21f6a1c4a55 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530867/ERR3530867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530867/ERR3530867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530867/721001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530867/721001.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530867/ERR3530867_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530867/ERR3530867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530867/721001.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530867/721001.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 167679224;168811564 ERS3755951 ERX3548928 GENOMIC 500445118 2019-09-19 721001 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530867/721001.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530867/721001.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530867 721001 ERR3530868 720989 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530868 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530868 6f61329129604cca55291fd677c97321;43c4af76bc7edc32e87415cebc48d2d7 1313 181291372 1b6732348e87c91f7b35879c597ce3d4;811a064010066df3896dc65c42bba409 SAMEA5785819 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530868/ERR3530868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530868/ERR3530868_2.fastq.gz 1917510 WGS 720989 RANDOM 130990106;131825250 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. daaf274046790e7a998e2c17488021dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530868/ERR3530868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530868/ERR3530868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530868/720989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530868/720989.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530868/ERR3530868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530868/ERR3530868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530868/720989.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530868/720989.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125869675;126693687 ERS3755962 ERX3548939 GENOMIC 373671214 2019-09-19 720989 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530868/720989.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530868/720989.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530868 720989 ERR3530869 657300 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530869 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530869 0c2fa21858e99d1834ecff0696c8603b;9adf3144f0b5a6d1e25e7151b295b065 1313 145271008 34a3a2a26d76b84083849b5fe2290028;b2c982b5ed3ec9ea0780df00aa6369f3 SAMEA5786092 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530869/ERR3530869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530869/ERR3530869_2.fastq.gz 1839315 WGS 657300 RANDOM 107844296;111409890 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6a18eff67f021c1df02e466918f4c24e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530869/ERR3530869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530869/ERR3530869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530869/657300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530869/657300.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530869/ERR3530869_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530869/ERR3530869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530869/657300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530869/657300.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102955119;106494046 ERS3756234 ERX3549211 GENOMIC 363804416 2019-09-19 657300 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530869/657300.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530869/657300.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530869 657300 ERR3530870 652825 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530870 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530870 30316cf375ee752d75b02a73a63495c6;9d915c7263ea2f24b279966f9c2e10dd 1313 186365071 88c86d94e7757bede78d0cd4338fb5a7;13cc7dc82e2f1f870de0720c52e68624 SAMEA5786098 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530870/ERR3530870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530870/ERR3530870_2.fastq.gz 2094454 WGS 652825 RANDOM 135444027;139169750 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1fe6fda9c2e32ade27c274e8dc50e127 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530870/ERR3530870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530870/ERR3530870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530870/652825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530870/652825.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530870/ERR3530870_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530870/ERR3530870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530870/652825.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530870/652825.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129975735;133697615 ERS3756240 ERX3549217 GENOMIC 417989479 2019-09-19 652825 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530870/652825.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530870/652825.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530870 652825 ERR3531003 753472 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531003 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531003 af93c253ed6e0456516498c225485540;83d5952352a23e1934e021fae63c5d9d 1313 104695773 71c137dfbe6261a26113f6c6316a4202;a1d9530e93deaa235977074246b77212 SAMEA5785719 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531003/ERR3531003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531003/ERR3531003_2.fastq.gz 1157765 WGS 753472 RANDOM 76637445;77304562 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b28b8023b01e6d9c85d2581205f70890 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531003/ERR3531003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531003/ERR3531003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531003/753472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531003/753472.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531003/ERR3531003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531003/ERR3531003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531003/753472.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531003/753472.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 73729309;74391814 ERS3755862 ERX3548839 GENOMIC 230743481 2019-09-19 753472 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531003/753472.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531003/753472.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531003 753472 ERR3531017 756622 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531017 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531017 b70f8bea6e0ddb70592311e70cf558cb;a172a8be5ed92ee5de8f1c0c1c7fde13 1313 151603151 edddc96df8ec7f36d6d068879c5ce9cd;78abf00b324028a53c11d023b0bf9354 SAMEA5785655 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531017/ERR3531017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531017/ERR3531017_2.fastq.gz 1654945 WGS 756622 RANDOM 110636014;111610447 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4e65685f32a0532c411a4cbca3ef78df ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531017/ERR3531017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531017/ERR3531017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531017/756622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531017/756622.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531017/ERR3531017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531017/ERR3531017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531017/756622.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531017/756622.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106303504;107247363 ERS3755798 ERX3548775 GENOMIC 328807525 2019-09-19 756622 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531017/756622.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531017/756622.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531017 756622 ERR3530873 300866 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530873 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530873 df1c52df19b230f8e5e76a0a7e81f78f;7d80239e440dc783b3e097713322e118 1313 180973628 7c723e534d6df9619061b4ec9cb4c78d;f7a0bc208eed3419280892366bee6de3 SAMEA5786274 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530873/ERR3530873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530873/ERR3530873_2.fastq.gz 2134426 WGS 300866 RANDOM 131052329;133106567 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 42497aae7905ced682dc8814696340b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530873/ERR3530873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530873/ERR3530873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530873/300866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530873/300866.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530873/ERR3530873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530873/ERR3530873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530873/300866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530873/300866.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 125715944;127744302 ERS3756416 ERX3549393 GENOMIC 421832987 2019-09-19 300866 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530873/300866.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530873/300866.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530873 300866 ERR3530874 642768 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530874 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530874 a00e946f00fef289d788e086e091a46b;f481e4920cb4092f762205bab928dbc3 1313 84746182 e67a59151d8b4d555ede0eafec12ec08;c01ddd23e654bfc9c9cb763341eae809 SAMEA5786123 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530874/ERR3530874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530874/ERR3530874_2.fastq.gz 1049102 WGS 642768 RANDOM 62229850;65454405 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7e4481802d3402810a775afc9cc995bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530874/ERR3530874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530874/ERR3530874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530874/642768.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530874/642768.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530874/ERR3530874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530874/ERR3530874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530874/642768.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530874/642768.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 59561743;62763804 ERS3756265 ERX3549242 GENOMIC 209665973 2019-09-19 642768 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530874/642768.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530874/642768.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530874 642768 ERR3531029 753413 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531029 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531029 9163cc3993678ffa24d757e709404b1f;64834cbe81fd6daf3ee2c78a9bffb368 1313 172955557 e2dcd7bf369c21a0ab14537d14f16e59;4ef7d6d76a1b85487d66616a7194814b SAMEA5785777 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531029/ERR3531029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531029/ERR3531029_2.fastq.gz 1918193 WGS 753413 RANDOM 124558343;128029847 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cde5467697b323998c60528ab3b14649 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531029/ERR3531029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531029/ERR3531029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531029/753413.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531029/753413.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531029/ERR3531029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531029/ERR3531029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531029/753413.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531029/753413.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 119402206;122887062 ERS3755920 ERX3548897 GENOMIC 373235646 2019-09-19 753413 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531029/753413.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531029/753413.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531029 753413 ERR3530876 759536 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530876 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530876 fec8ca180c38c97b633f1cd63a88c46a;0af9fd3fa118fb6cbbba7eb9abe4dd23 1313 191258987 874344f39623ed5ae6c070054062cb82;ee153abf67d2b34ead31b84ddbaf46bf SAMEA5785471 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530876/ERR3530876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530876/ERR3530876_2.fastq.gz 2258139 WGS 759536 RANDOM 139558574;144538102 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. be3f77fa5f3301952683b534a17a5e24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530876/ERR3530876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530876/ERR3530876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530876/759536.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530876/759536.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530876/ERR3530876_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530876/ERR3530876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530876/759536.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530876/759536.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 133645338;138620973 ERS3755614 ERX3548591 GENOMIC 448254026 2019-09-19 759536 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530876/759536.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530876/759536.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530876 759536 ERR3530877 717984 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530877 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530877 c9acb8b403421ea1dd1f975783439dd4;f453d0ef10f5bc5bf7a2488310d3cb82 1313 111668170 f188cce5283fd04b87f5a0bc873ae576;5fd9fdd334ab7eb477dafba6f39fe830 SAMEA5785959 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530877/ERR3530877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530877/ERR3530877_2.fastq.gz 1305608 WGS 717984 RANDOM 82263870;83505087 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dfbdcdee6015f8aa4b1a849cb66d4eb6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530877/ERR3530877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530877/ERR3530877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530877/717984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530877/717984.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530877/ERR3530877_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530877/ERR3530877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530877/717984.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530877/717984.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78933537;80164290 ERS3756101 ERX3549078 GENOMIC 258561348 2019-09-19 717984 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530877/717984.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530877/717984.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530877 717984 ERR3530878 717922 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530878 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530878 d908dd1392e215836817de43446324d0;c4948ef69c8f52e3942ad372e502d7c5 1313 178352046 d86ad157a84bdf03c4e97ea25324cbcd;d95cd9b916b46c68349032a6da2f97ae SAMEA5786012 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530878/ERR3530878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530878/ERR3530878_2.fastq.gz 2127075 WGS 717922 RANDOM 132426722;133848028 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ff8fe964c600cf1d1f746a72a3b5c8f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530878/ERR3530878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530878/ERR3530878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530878/717922.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530878/717922.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530878/ERR3530878_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530878/ERR3530878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530878/717922.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530878/717922.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 126804960;128218643 ERS3756154 ERX3549131 GENOMIC 424800403 2019-09-19 717922 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530878/717922.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530878/717922.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530878 717922 ERR3530879 717888 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530879 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530879 272efc09ef5ee874740b1f5bd8a48dec;26f4be46ea4b6f85e6c053e40f616904 1313 143230223 e09faac0a770d7cc7b037f16678bb8a6;57cc767a0984eca4b03d5de0b11df510 SAMEA5786029 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530879/ERR3530879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530879/ERR3530879_2.fastq.gz 1707400 WGS 717888 RANDOM 106065319;108072908 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ff9df282c16a6f3063604e7c15546cf4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530879/ERR3530879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530879/ERR3530879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530879/717888.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530879/717888.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530879/ERR3530879_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530879/ERR3530879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530879/717888.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530879/717888.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101510927;103506312 ERS3756171 ERX3549148 GENOMIC 340738757 2019-09-19 717888 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530879/717888.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530879/717888.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530879 717888 ERR3530880 717961 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530880 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530880 9e7bc16df9fd57b9221352e37b989cad;21f3a6055487089ebfe9654f9006cdea 1313 158716171 48bd0dd295e871ec3da71cfde5e099e1;34de006a9cdb69afd85d4f3cfc5979df SAMEA5785979 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530880/ERR3530880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530880/ERR3530880_2.fastq.gz 1852717 WGS 717961 RANDOM 116778362;119125323 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9dcd9d79eb534149c0897925aee9f511 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530880/ERR3530880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530880/ERR3530880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530880/717961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530880/717961.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530880/ERR3530880_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530880/ERR3530880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530880/717961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530880/717961.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111805698;114141045 ERS3756121 ERX3549098 GENOMIC 369074905 2019-09-19 717961 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530880/717961.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530880/717961.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530880 717961 ERR3530881 756618 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530881 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530881 72b5aa7c14fe69476f832d0dccdf5a05;fc400fd78c9808cde211c84f16b0e3c4 1313 140365148 34bf23b6ccb7374fce614782829215ea;96a99f741fcde5d64abc31c5381514f4 SAMEA5785659 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530881/ERR3530881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530881/ERR3530881_2.fastq.gz 1518834 WGS 756618 RANDOM 102253368;103546815 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 37ea1f57f709fc7c52f15282eb9e2c19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530881/ERR3530881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530881/ERR3530881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530881/756618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530881/756618.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530881/ERR3530881_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530881/ERR3530881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530881/756618.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530881/756618.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98380284;99642135 ERS3755802 ERX3548779 GENOMIC 302466517 2019-09-19 756618 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530881/756618.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530881/756618.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530881 756618 ERR3530882 653572 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530882 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530882 bf6906bdd32c663567f7788483577e77;109fb6def0ac12216b9857c85b1a90b0 1313 153587842 866f1b4a8e5b18c8568c39f5acd27785;0aaf30e5a8f2e0c3660e2437f4882e0a SAMEA5786094 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530882/ERR3530882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530882/ERR3530882_2.fastq.gz 1569151 WGS 653572 RANDOM 108454199;113562988 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7a9c971f4a1b4e6c488051384245d122 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530882/ERR3530882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530882/ERR3530882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530882/653572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530882/653572.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530882/ERR3530882_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530882/ERR3530882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530882/653572.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530882/653572.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104299749;109371121 ERS3756236 ERX3549213 GENOMIC 312484188 2019-09-19 653572 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530882/653572.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530882/653572.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530882 653572 ERR3530883 308589 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530883 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530883 7166c8c4dde256b6f7209d520b084daf;e9a9cf899e0790f05eaf6b427a45ea63 1313 204920742 b8b4aecf56f4440d301c231ea93bf15d;1b565f48d09709040a06fb7aa5e10aec SAMEA5786199 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530883/ERR3530883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530883/ERR3530883_2.fastq.gz 2264295 WGS 308589 RANDOM 148896402;151727288 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c555ca3d6f53530b7fe061dec342f95b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530883/ERR3530883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530883/ERR3530883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530883/308589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530883/308589.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530883/ERR3530883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530883/ERR3530883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530883/308589.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530883/308589.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143018624;145843143 ERS3756341 ERX3549318 GENOMIC 449989124 2019-09-19 308589 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530883/308589.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530883/308589.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530883 308589 ERR3530884 720247 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530884 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530884 f7717fff3ad5c09bb093b3dcfbf18170;502ff57ba4cbca0845fde5d40d0495e4 1313 81311062 aecb0a79fc42f1ed381808512ff5540a;bf5481d6afeb7e6129bc3f5b0d970c5e SAMEA5785887 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530884/ERR3530884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530884/ERR3530884_2.fastq.gz 900411 WGS 720247 RANDOM 58814190;60609576 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9cee1f82f5d43f47c1acbf3316637ea0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530884/ERR3530884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530884/ERR3530884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530884/720247.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530884/720247.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530884/ERR3530884_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530884/ERR3530884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530884/720247.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530884/720247.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56550640;58330383 ERS3756030 ERX3549007 GENOMIC 178790924 2019-09-19 720247 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530884/720247.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530884/720247.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530884 720247 ERR3531033 757963 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531033 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531033 539804e03a9114016c4181335b84a551;883d97ea95544c2349a18027b4a75e72 1313 101446742 ae55f044bf9c4ebcb65489d8e8549bfd;f04f47254c265ff77ba43950fa94e782 SAMEA5785567 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531033/ERR3531033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531033/ERR3531033_2.fastq.gz 1230409 WGS 757963 RANDOM 74965287;77021474 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 49a35f339f7241bb5e0f5525f4663a6e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531033/ERR3531033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531033/ERR3531033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531033/757963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531033/757963.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531033/ERR3531033_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531033/ERR3531033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531033/757963.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531033/757963.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71818113;73868314 ERS3755710 ERX3548687 GENOMIC 244192463 2019-09-19 757963 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531033/757963.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531033/757963.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531033 757963 ERR3530886 753485 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530886 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530886 9d86b3b2f4c58a466336002fe3b08a34;bbd522aeb210d72b7843deb58d396598 1313 123684402 445e79b093804b493aaa743f346f9d21;06973c45fc1b6c04b19d4114b9f7cfdd SAMEA5785707 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530886/ERR3530886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530886/ERR3530886_2.fastq.gz 1370241 WGS 753485 RANDOM 90658179;91286663 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3727c981935bd2d50312f4f96a7e80ce ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530886/ERR3530886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530886/ERR3530886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530886/753485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530886/753485.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530886/ERR3530886_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530886/ERR3530886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530886/753485.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530886/753485.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87212428;87841205 ERS3755850 ERX3548827 GENOMIC 272840306 2019-09-19 753485 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530886/753485.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530886/753485.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530886 753485 ERR3530888 753463 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530888 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530888 8ddbc31877aac31ccf9ad5d1ff2664e4;3e4cab9abf6468c0ee6984e1860e614c 1313 111183869 06e22c1da7d8bea9d618806a8cf02156;9157de522aaeef082112f64163f99970 SAMEA5785727 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530888/ERR3530888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530888/ERR3530888_2.fastq.gz 1231226 WGS 753463 RANDOM 81477799;81781348 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 90559015640f37a0bf2bd8653d8edf97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530888/ERR3530888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530888/ERR3530888_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530888/753463.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530888/753463.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530888/ERR3530888_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530888/ERR3530888_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530888/753463.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530888/753463.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78349844;78653628 ERS3755870 ERX3548847 GENOMIC 244550630 2019-09-19 753463 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530888/753463.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530888/753463.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530888 753463 ERR3530887 652829 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530887 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530887 20751933bedd99424ea76a41d65b8d6a;597f7377c0b1ea0e609484b904a6581f 1313 106833997 e78df212654d70dd4fe25ead3704fec0;78550e2bf98a4f11e37f25e8aa8df170 SAMEA5786095 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530887/ERR3530887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530887/ERR3530887_2.fastq.gz 1176725 WGS 652829 RANDOM 76900758;80385542 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d4ed38ee81419ca830e0ec6e66377672 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530887/ERR3530887_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530887/ERR3530887_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530887/652829.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530887/652829.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530887/ERR3530887_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530887/ERR3530887_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530887/652829.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530887/652829.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 73961699;77427103 ERS3756237 ERX3549214 GENOMIC 235005830 2019-09-19 652829 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530887/652829.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530887/652829.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530887 652829 ERR3530889 760599 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530889 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530889 c20a14c9f26b43071b92a48a791974a5;b6e44fe910033be99ef7bfb170ab9e46 1313 134998579 f28c5673322148b5f65c23af52cb23ce;2593c28bef8b1d1e938e6db0262b2b01 SAMEA5785438 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530889/ERR3530889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530889/ERR3530889_2.fastq.gz 1471300 WGS 760599 RANDOM 98157143;100219886 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9731a61a1c3437a22b51f06dbe1483db ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530889/ERR3530889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530889/ERR3530889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530889/760599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530889/760599.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530889/ERR3530889_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530889/ERR3530889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530889/760599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530889/760599.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94424534;96457055 ERS3755581 ERX3548558 GENOMIC 293203640 2019-09-19 760599 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530889/760599.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530889/760599.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530889 760599 ERR3530890 720945 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530890 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530890 4c421f2a1a9a571911578b656cb22447;e40afbe1a011fe69528e441ee0de3cf0 1313 436788167 f22489231743ff225dd9be217c88f63b;c45fa9e30bd21e572e70776eb541a5c8 SAMEA5785863 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530890/ERR3530890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530890/ERR3530890_2.fastq.gz 4584402 WGS 720945 RANDOM 316227703;317675116 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0d22fdb28b361217195a33a77bec0af9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530890/ERR3530890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530890/ERR3530890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530890/720945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530890/720945.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530890/ERR3530890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530890/ERR3530890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530890/720945.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530890/720945.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 302948644;304383718 ERS3756006 ERX3548983 GENOMIC 909252385 2019-09-19 720945 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530890/720945.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530890/720945.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530890 720945 ERR3530891 759532 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530891 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530891 f705b73f270b95ba8ca3fb121c701468;7cc556f3a53be166b07cc9ecc1f1232d 1313 232016608 26807d16880139f4d2619a35fcfcd11c;393665e83735cda059996b67b91d272c SAMEA5785475 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530891/ERR3530891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530891/ERR3530891_2.fastq.gz 2769023 WGS 759532 RANDOM 169739438;175126360 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 933d59954b37aec9fb1e9908a1d05df6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530891/ERR3530891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530891/ERR3530891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530891/759532.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530891/759532.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530891/ERR3530891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530891/ERR3530891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530891/759532.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530891/759532.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 162465885;167831896 ERS3755618 ERX3548595 GENOMIC 549997710 2019-09-19 759532 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530891/759532.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530891/759532.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530891 759532 ERR3530893 311482 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530893 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530893 04af24c72c52d54f40fcc2631c2c61fa;b5e2f91e320769bb06f4157f6624d34a 1313 151134023 a7d6ad0a899682e7f5fc808a5df44587;28e9a2251c6cbea0e84b6864721450b1 SAMEA5786142 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530893/ERR3530893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530893/ERR3530893_2.fastq.gz 1680874 WGS 311482 RANDOM 109916265;111690486 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3ee187b8288e72908a42bcb56e42451f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530893/ERR3530893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530893/ERR3530893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530893/311482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530893/311482.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530893/ERR3530893_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530893/ERR3530893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530893/311482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530893/311482.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105383071;107162602 ERS3756284 ERX3549261 GENOMIC 331775311 2019-09-19 311482 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530893/311482.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530893/311482.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530893 311482 ERR3531044 753491 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531044 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531044 a330cc9bbd09ec3cf1e660b0b6d28c75;a906e01c6d82eea9925d04c7c2ea1ad9 1313 138929525 bf96ef4670a35a7911d875dcb7494d9f;0b54490c2563f06d9592d70d4cf9b5bc SAMEA5785701 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531044/ERR3531044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531044/ERR3531044_2.fastq.gz 1555278 WGS 753491 RANDOM 102226959;102177927 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 55fe98c75d1825f490232489819818fb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531044/ERR3531044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531044/ERR3531044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531044/753491.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531044/753491.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531044/ERR3531044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531044/ERR3531044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531044/753491.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531044/753491.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98158099;98120222 ERS3755844 ERX3548821 GENOMIC 306384901 2019-09-19 753491 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531044/753491.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531044/753491.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531044 753491 ERR3530895 759540 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530895 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530895 95d667c0512ad7fbe8e19cff7500b63a;5eb818b2cd59697f2ea66209ec3850f1 1313 204093121 757384bc6c2ab0326e5908ed60feb38a;16c118f9c7dfb1dbfdd061fb700c66cd SAMEA5785467 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530895/ERR3530895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530895/ERR3530895_2.fastq.gz 2430885 WGS 759540 RANDOM 149855549;153381447 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 082a8aa7dc7809ef96dcffa2138fb3ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530895/ERR3530895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530895/ERR3530895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530895/759540.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530895/759540.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530895/ERR3530895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530895/ERR3530895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530895/759540.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530895/759540.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 143570460;147067719 ERS3755610 ERX3548587 GENOMIC 481923770 2019-09-19 759540 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530895/759540.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530895/759540.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530895 759540 ERR3530894 300875 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530894 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530894 09b2d51d3e798cc38ce313e7cc37af8e;88b751fef9197baecc07ef0bfbe36d27 1313 111606514 2e9b7b2b08fe67d1539a2af267bd2534;a21758c5c0dd60d4ecbec27b144310df SAMEA5786267 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530894/ERR3530894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530894/ERR3530894_2.fastq.gz 1317405 WGS 300875 RANDOM 80899227;82355509 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 57e815862358f01eb80d581cfa0d561c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530894/ERR3530894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530894/ERR3530894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530894/300875.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530894/300875.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530894/ERR3530894_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530894/ERR3530894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530894/300875.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530894/300875.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 77716223;79144446 ERS3756409 ERX3549386 GENOMIC 260600584 2019-09-19 300875 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530894/300875.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530894/300875.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530894 300875 ERR3530896 311477 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530896 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530896 b90be81519c33e8baaf6f717014eabdf;4ac03d3df9dcfb2ef46f15b79ffecb8c 1313 137045501 4eab71f32d72cb026e8f54f8de064dab;37fb18b5c6664484c11aa6bbfb6272b5 SAMEA5786147 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530896/ERR3530896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530896/ERR3530896_2.fastq.gz 1535808 WGS 311477 RANDOM 100210500;100805494 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 641b6f040b69fd8d9f4a9f0bb4f24c78 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530896/ERR3530896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530896/ERR3530896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530896/311477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530896/311477.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530896/ERR3530896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530896/ERR3530896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530896/311477.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530896/311477.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 96134868;96743572 ERS3756289 ERX3549266 GENOMIC 301137322 2019-09-19 311477 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530896/311477.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530896/311477.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530896 311477 ERR3530897 717852 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530897 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530897 ba4c67ac0b4bbd0385a8521b2e78b708;3140785ab5cb0451fe2dab6e686867e6 1313 104306410 3ff9b0c230f0285b47cf73a3bd052327;62a3a768a838d42adf13e808b0c5190b SAMEA5786044 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530897/ERR3530897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530897/ERR3530897_2.fastq.gz 1203052 WGS 717852 RANDOM 74759810;79795524 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 456089de7d6a9e96acd4e303f154e729 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530897/ERR3530897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530897/ERR3530897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530897/717852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530897/717852.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530897/ERR3530897_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530897/ERR3530897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530897/717852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530897/717852.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71740629;76768925 ERS3756186 ERX3549163 GENOMIC 239205238 2019-09-19 717852 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530897/717852.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530897/717852.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530897 717852 ERR3530898 293063 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530898 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530898 8424905032d8723a7b6375ba70767477;8df40e2425a45af9ad31da60b0f53f25 1313 143009757 b1fe3ecf80ae263a7049a9ce1e899c42;15cd92b274830e9eb43fabbde34c134a SAMEA5786300 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530898/ERR3530898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530898/ERR3530898_2.fastq.gz 1574230 WGS 293063 RANDOM 101485531;104138740 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2afcd56ae6bd860555766a2ba389fa48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530898/ERR3530898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530898/ERR3530898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530898/293063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530898/293063.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530898/ERR3530898_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530898/ERR3530898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530898/293063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530898/293063.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97501776;100094629 ERS3756442 ERX3549419 GENOMIC 311664549 2019-09-19 293063 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530898/293063.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530898/293063.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530898 293063 ERR3530900 308602 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530900 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530900 64a59df717640e67667f4f71675d828b;ad3613d9387eeeecf2efbf9c30346841 1313 177364933 6e8c7dc49b5b21da2e5067a13862c4da;5295680c46bed61b7210e8d33d2a3180 SAMEA5786188 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530900/ERR3530900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530900/ERR3530900_2.fastq.gz 1957815 WGS 308602 RANDOM 129079397;131396367 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cb449cc658d04139320cf05f0f1534c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530900/ERR3530900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530900/ERR3530900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530900/308602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530900/308602.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530900/ERR3530900_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530900/ERR3530900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530900/308602.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530900/308602.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123891413;126198560 ERS3756330 ERX3549307 GENOMIC 388484937 2019-09-19 308602 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530900/308602.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530900/308602.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530900 308602 ERR3530899 721015 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530899 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530899 f79fcde46e5bf965a502967a3f492373;4816912ff1550083c90ac9605a1d67f6 1313 240112770 ff87fac9ba950499e411d5c130a1b5cf;7a5c5211a953deac28a6cf2ce9d987b8 SAMEA5785794 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530899/ERR3530899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530899/ERR3530899_2.fastq.gz 2526066 WGS 721015 RANDOM 172839658;174588992 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8c0585a05b69be6ff79cdbcb7c70799d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530899/ERR3530899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530899/ERR3530899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530899/721015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530899/721015.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530899/ERR3530899_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530899/ERR3530899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530899/721015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530899/721015.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 166368984;168098328 ERS3755937 ERX3548914 GENOMIC 500552378 2019-09-19 721015 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530899/721015.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530899/721015.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530899 721015 ERR3530901 721006 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530901 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530901 dd96e7b504978f042f8a3de64aa79b49;c27b06fd15ccccadc34c4cbad197eb90 1313 117785313 04ba0ebdf7f060b933ea33fe576cef18;61e5b8d63f2e413e7c0e01f2d3706a9f SAMEA5785803 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530901/ERR3530901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530901/ERR3530901_2.fastq.gz 1225477 WGS 721006 RANDOM 84541871;86039200 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a385f622efaa3bc04a5d1da1fd4d18a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530901/ERR3530901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530901/ERR3530901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530901/721006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530901/721006.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530901/ERR3530901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530901/ERR3530901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530901/721006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530901/721006.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81467642;82942073 ERS3755946 ERX3548923 GENOMIC 242503754 2019-09-19 721006 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530901/721006.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530901/721006.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530901 721006 ERR3530902 311489 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530902 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530902 66378bba7d61aaedd3da3733c1754d6e;c2a35d645fccdf8512c20c648b6ba992 1313 174031395 c093d1da5397380322bed4b073ea6e69;ac3eff7f5b779abe4e0cb20e4ce74394 SAMEA5786135 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530902/ERR3530902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530902/ERR3530902_2.fastq.gz 1949862 WGS 311489 RANDOM 126716133;128129322 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9e5f1885f745cbba0c38a179d497ed9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530902/ERR3530902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530902/ERR3530902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530902/311489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530902/311489.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530902/ERR3530902_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530902/ERR3530902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530902/311489.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530902/311489.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 121455857;122873571 ERS3756277 ERX3549254 GENOMIC 382872119 2019-09-19 311489 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530902/311489.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530902/311489.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530902 311489 ERR3530903 717990 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530903 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530903 2c7bccf2563167851960ed0e9e7ec7ba;355f2e87a367d6549b1376d85c6d9a17 1313 174166888 3de6b0ef2a0b14e811b4023aa1cbba0d;6b9a78cb9a615be3061bb2db7cf8fc72 SAMEA5785954 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530903/ERR3530903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530903/ERR3530903_2.fastq.gz 2049521 WGS 717990 RANDOM 128072815;130312907 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3ad6c18d07f938480434ac8d79ebaeb0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530903/ERR3530903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530903/ERR3530903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530903/717990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530903/717990.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530903/ERR3530903_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530903/ERR3530903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530903/717990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530903/717990.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122565765;124799668 ERS3756096 ERX3549073 GENOMIC 402742346 2019-09-19 717990 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530903/717990.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530903/717990.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530903 717990 ERR3530904 756654 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530904 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530904 da87f5b3e0e70ac45f269b1db7bf5f08;c6398638e4eadf2dec59447553f5f45d 1313 148187576 b278db705b4526e353060fa446f18475;9a1b1592a664685172779d39aa82493b SAMEA5785624 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530904/ERR3530904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530904/ERR3530904_2.fastq.gz 1590141 WGS 756654 RANDOM 106742663;110024266 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 11aca87db64f76e699dcba860388db01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530904/ERR3530904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530904/ERR3530904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530904/756654.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530904/756654.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530904/ERR3530904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530904/ERR3530904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530904/756654.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530904/756654.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102598884;105823267 ERS3755767 ERX3548744 GENOMIC 316731830 2019-09-19 756654 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530904/756654.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530904/756654.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530904 756654 ERR3530905 311471 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530905 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530905 b68d2670e10a943c8d37dfdbe1b4a6f4;7125eeced34664b1fdbd1030b08357c9 1313 166593488 fc8ec2129bf5fb61197c4922ec368228;80dafc374cdd2eb105f81395283729a8 SAMEA5786153 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530905/ERR3530905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530905/ERR3530905_2.fastq.gz 1864330 WGS 311471 RANDOM 120977604;123006649 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0ec4a804dd548024a8d13802d3c04725 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530905/ERR3530905_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530905/ERR3530905_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530905/311471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530905/311471.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530905/ERR3530905_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530905/ERR3530905_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530905/311471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530905/311471.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 115928366;117963361 ERS3756295 ERX3549272 GENOMIC 366148348 2019-09-19 311471 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530905/311471.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530905/311471.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530905 311471 ERR3530906 308565 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530906 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530906 208b2811563514ad7d3f8616a1f401d7;e6dc189bf538dcf706c7d3d341e98c7f 1313 206514310 426047ff686e884b1c6c8325ecfd27af;5f5562709a53694cd011933699e6e256 SAMEA5786222 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530906/ERR3530906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530906/ERR3530906_2.fastq.gz 2332513 WGS 308565 RANDOM 150187520;152151478 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2268c529c2550630827e691d4a44af2c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530906/ERR3530906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530906/ERR3530906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530906/308565.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530906/308565.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530906/ERR3530906_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530906/ERR3530906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530906/308565.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530906/308565.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 144128537;146098993 ERS3756364 ERX3549341 GENOMIC 446987795 2019-09-19 308565 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530906/308565.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530906/308565.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530906 308565 ERR3530907 759537 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530907 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530907 e7293de2f7ddeac25184a10fa91f6ee1;1a7547b8008824aa3ea37b618ddf6773 1313 149187102 6e6d2a90696c5905894891878a7dd34c;4b5ba9d46e8c05ee13ae479adf9a73c3 SAMEA5785470 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530907/ERR3530907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530907/ERR3530907_2.fastq.gz 1766337 WGS 759537 RANDOM 109003071;113425820 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d8748f2b0bcf919d70bda37d38f2ab09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530907/ERR3530907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530907/ERR3530907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530907/759537.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530907/759537.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530907/ERR3530907_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530907/ERR3530907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530907/759537.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530907/759537.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104279167;108704268 ERS3755613 ERX3548590 GENOMIC 351516011 2019-09-19 759537 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530907/759537.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530907/759537.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530907 759537 ERR3530908 304267 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530908 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530908 1953d1f388b1eaa5db18902d854f2397;931eccbbbf92ba2a88ff90139ab6c699 1313 171693417 dce5cab61ca312055bab35e95904d08c;7cad383531fffa7a8cc70cae1c21cd16 SAMEA5786257 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530908/ERR3530908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530908/ERR3530908_2.fastq.gz 1965437 WGS 304267 RANDOM 125282754;128081519 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4d23499f7c59bcb2ce1f8fe0c8e930b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530908/ERR3530908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530908/ERR3530908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530908/304267.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530908/304267.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530908/ERR3530908_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530908/ERR3530908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530908/304267.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530908/304267.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120121262;122910520 ERS3756399 ERX3549376 GENOMIC 390621784 2019-09-19 304267 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530908/304267.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530908/304267.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530908 304267 ERR3531048 757937 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531048 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531048 86cf88869760581a92766929e9428821;0521129c1e5125e2f9e3a68a87aa6f78 1313 131606907 ff1aecf8c8c146d0f54a23ddaca3a2a5;944959fa246399dd401e039a96b8f595 SAMEA5785591 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531048/ERR3531048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531048/ERR3531048_2.fastq.gz 1601282 WGS 757937 RANDOM 96916681;99930501 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d4ccd6d9d671a30ff96b7e40491a8fab ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531048/ERR3531048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531048/ERR3531048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531048/757937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531048/757937.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531048/ERR3531048_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531048/ERR3531048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531048/757937.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531048/757937.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92713642;95723894 ERS3755734 ERX3548711 GENOMIC 315646418 2019-09-19 757937 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531048/757937.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531048/757937.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531048 757937 ERR3530910 720242 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530910 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530910 704a0d7e693342c2b7898c455e3d2930;18d5b87596cdb8022c44a2a9fe17b8d6 1313 89680094 88b54ce175e18abf565283f74652edf9;90a2eadf600578c749ddcc28842920dd SAMEA5785892 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530910/ERR3530910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530910/ERR3530910_2.fastq.gz 982115 WGS 720242 RANDOM 63438489;67663253 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a7f519acaa4932b6c788a8e79265afd2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530910/ERR3530910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530910/ERR3530910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530910/720242.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530910/720242.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530910/ERR3530910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530910/ERR3530910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530910/720242.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530910/720242.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60953052;65141157 ERS3756035 ERX3549012 GENOMIC 194889530 2019-09-19 720242 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530910/720242.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530910/720242.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530910 720242 ERR3530911 720249 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530911 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530911 921da0891442638d5c5677e930a8454b;493e7a698a64b59457e06e4d5bd39962 1313 103638136 127c778c1c61015b817d499687339076;0721f13f7598c48ecbdc0089ca784825 SAMEA5785885 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530911/ERR3530911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530911/ERR3530911_2.fastq.gz 1166727 WGS 720249 RANDOM 75849620;76533464 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bc595a45f3cae6a9dc56fdee0c533e89 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530911/ERR3530911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530911/ERR3530911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530911/720249.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530911/720249.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530911/ERR3530911_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530911/ERR3530911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530911/720249.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530911/720249.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 72853003;73532384 ERS3756028 ERX3549005 GENOMIC 228713428 2019-09-19 720249 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530911/720249.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530911/720249.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530911 720249 ERR3530912 720252 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530912 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530912 ebcd07714a42731bd2c159af2fd6f711;94b4718a8eb7da459ab3002b8cb553f8 1313 95306023 676ece92873e38a57bc4be9afa3bfa81;968fe1a94ce1cac9b44fe4d91d4b11f6 SAMEA5785882 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530912/ERR3530912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530912/ERR3530912_2.fastq.gz 1069861 WGS 720252 RANDOM 69991679;70372665 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6cf80bbec30b5bd939940ac773575906 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530912/ERR3530912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530912/ERR3530912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530912/720252.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530912/720252.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530912/ERR3530912_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530912/ERR3530912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530912/720252.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530912/720252.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 67244854;67625659 ERS3756025 ERX3549002 GENOMIC 211028911 2019-09-19 720252 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530912/720252.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530912/720252.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530912 720252 ERR3530913 655411 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530913 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530913 4cc373c05ef23118ac52410c270b56bc;3dbefeb0a46cffb2ae00a186c7bab801 1313 102890249 b18b46dbf872146ef3bfec21a8ba0e9c;102df93834aa7eb77d99d3da17da1457 SAMEA5786093 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530913/ERR3530913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530913/ERR3530913_2.fastq.gz 1175754 WGS 655411 RANDOM 75965212;76234580 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0b84821c8126e8b994c507d8425222c9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530913/ERR3530913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530913/ERR3530913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530913/655411.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530913/655411.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530913/ERR3530913_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530913/ERR3530913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530913/655411.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530913/655411.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 72969746;73235680 ERS3756235 ERX3549212 GENOMIC 233675820 2019-09-19 655411 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530913/655411.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530913/655411.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530913 655411 ERR3530914 308588 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530914 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530914 69205b9d4ccb081b305eedeef55ffb54;62261ab5eda5892d57dd27ca92353a19 1313 212738003 bf7d90b32202b3e87687fd157a055e4c;c629a4c52a61fea46d4a20ec1cdb23c3 SAMEA5786200 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530914/ERR3530914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530914/ERR3530914_2.fastq.gz 2363928 WGS 308588 RANDOM 153958204;157298598 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e06e2fdd825db22abe34eb55da147149 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530914/ERR3530914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530914/ERR3530914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530914/308588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530914/308588.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530914/ERR3530914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530914/ERR3530914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530914/308588.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530914/308588.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 147818971;151160103 ERS3756342 ERX3549319 GENOMIC 464352791 2019-09-19 308588 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530914/308588.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530914/308588.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530914 308588 ERR3531055 753425 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531055 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531055 1b41a79ccd37297f7c12e0c4ac17e5c7;4461fde9c4b4137e7a27b42deafaf01f 1313 109408361 54bbbba68bacbe63439e0add41d40661;604da8a4bef6cc3f423e3ed783ea7c86 SAMEA5785765 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531055/ERR3531055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531055/ERR3531055_2.fastq.gz 1189854 WGS 753425 RANDOM 78473713;81341528 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. dc38e121d25961cc5598023e24178ee2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531055/ERR3531055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531055/ERR3531055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531055/753425.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531055/753425.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531055/ERR3531055_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531055/ERR3531055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531055/753425.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531055/753425.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75464093;78333002 ERS3755908 ERX3548885 GENOMIC 236210732 2019-09-19 753425 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531055/753425.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531055/753425.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531055 753425 ERR3530916 308638 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530916 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530916 b2ff347f69e83ce96b14722bf06de957;32a809b203bb71c5e4fa279d1a3d18ae 1313 196475402 967d60ee324c95846a6da0ba4f4d8a68;2e615f406636cc601c85755334f23816 SAMEA5786156 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530916/ERR3530916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530916/ERR3530916_2.fastq.gz 2202981 WGS 308638 RANDOM 143276259;144775671 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c29d871392df9b9e159f2ce861debf14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530916/ERR3530916_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530916/ERR3530916_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530916/308638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530916/308638.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530916/ERR3530916_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530916/ERR3530916_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530916/308638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530916/308638.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137547140;139043778 ERS3756298 ERX3549275 GENOMIC 430120977 2019-09-19 308638 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530916/308638.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530916/308638.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530916 308638 ERR3530917 757981 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530917 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530917 8b3c3d61b2dfb8fcc713a49d6f3f6afb;1d1c15a94b9cb8497c0d67d6bea15501 1313 172146920 49e79db826eab7e56c6a44b1eca878bb;12f20c26c7da55915dab97a16443ce2d SAMEA5785549 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530917/ERR3530917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530917/ERR3530917_2.fastq.gz 2075911 WGS 757981 RANDOM 126885067;130438076 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 67b1f13dc5c052b257f3dbd417968203 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530917/ERR3530917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530917/ERR3530917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530917/757981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530917/757981.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530917/ERR3530917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530917/ERR3530917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530917/757981.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530917/757981.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 121377651;124927387 ERS3755692 ERX3548669 GENOMIC 413291548 2019-09-19 757981 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530917/757981.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530917/757981.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530917 757981 ERR3530919 308578 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530919 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530919 c978cd11b47c34086a864b0ae9ec8ddb;dd337e345e9260e590f3197fd6828f4f 1313 200545931 ce89b8ef0353d8fb15edc9dae9bb7e21;c1b818cc64f53c78b99984be0ea3016e SAMEA5786209 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530919/ERR3530919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530919/ERR3530919_2.fastq.gz 2186171 WGS 308578 RANDOM 145425414;147857221 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 496093ef8878f72ea8ad7e5e29329b78 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530919/ERR3530919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530919/ERR3530919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530919/308578.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530919/308578.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530919/ERR3530919_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530919/ERR3530919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530919/308578.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530919/308578.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139753537;142166712 ERS3756351 ERX3549328 GENOMIC 433406989 2019-09-19 308578 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530919/308578.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530919/308578.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530919 308578 ERR3530918 756599 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530918 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530918 47e66a1405189bfde08e7967d43b2315;0fe7704a5d6b50736e11480bdfa6c075 1313 162993567 0cfe8870dbbdd13c728650071552330b;c25166562c12076661f3d1869029290d SAMEA5785678 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530918/ERR3530918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530918/ERR3530918_2.fastq.gz 1753824 WGS 756599 RANDOM 117145811;121036912 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3741f9aed293938ce61462509695c61f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530918/ERR3530918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530918/ERR3530918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530918/756599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530918/756599.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530918/ERR3530918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530918/ERR3530918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530918/756599.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530918/756599.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112564910;116400038 ERS3755821 ERX3548798 GENOMIC 347814805 2019-09-19 756599 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530918/756599.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530918/756599.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530918 756599 ERR3530920 720210 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530920 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530920 e3e279693fc333a2fbf5c08cc9ca191e;1c9914b107316bda5cdedfa76790f6d3 1313 118384133 e7bbf6c8b977b6091d8ff56c4ad6489a;bdbec75157d8b13050ca916a27deae6d SAMEA5785925 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530920/ERR3530920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530920/ERR3530920_2.fastq.gz 1312101 WGS 720210 RANDOM 85214472;88278304 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 882271004076b8c1754f49750d54d93b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530920/ERR3530920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530920/ERR3530920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530920/720210.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530920/720210.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530920/ERR3530920_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530920/ERR3530920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530920/720210.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530920/720210.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 81854144;84892385 ERS3756067 ERX3549044 GENOMIC 260196700 2019-09-19 720210 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530920/720210.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530920/720210.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530920 720210 ERR3530921 717944 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530921 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530921 4f7ff30c7406aed88e83df5184a8925a;b6e4e394a844a1d014b92a12b5f4d3a0 1313 123132029 3a089ad5a0b7a4ef363175447cceab1f;b62ada508400ef2151cf501ac4847d53 SAMEA5785996 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530921/ERR3530921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530921/ERR3530921_2.fastq.gz 1474298 WGS 717944 RANDOM 91459480;92696900 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4cba07942e77fbbcfdf21c49b145d8ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530921/ERR3530921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530921/ERR3530921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530921/717944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530921/717944.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530921/ERR3530921_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530921/ERR3530921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530921/717944.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530921/717944.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 87621106;88844843 ERS3756138 ERX3549115 GENOMIC 293710377 2019-09-19 717944 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530921/717944.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530921/717944.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530921 717944 ERR3530922 760308 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530922 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530922 7c11b7bb5a97358e82b527a6a087eea3;08a8ae53629b0568acb93b548e7af9c4 1313 154150972 ae40a2e6e7b672360b5205a2e399d36e;0fce2485b378a6782c9b82e28d78b6ce SAMEA5785453 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530922/ERR3530922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530922/ERR3530922_2.fastq.gz 1835349 WGS 760308 RANDOM 113939179;116419042 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 651e352865e7e1adf5054a2f2b57da51 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530922/ERR3530922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530922/ERR3530922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530922/760308.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530922/760308.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530922/ERR3530922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530922/ERR3530922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530922/760308.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530922/760308.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109053897;111524914 ERS3755596 ERX3548573 GENOMIC 366711498 2019-09-19 760308 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530922/760308.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530922/760308.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530922 760308 ERR3531056 756686 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531056 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531056 5b468f7c0b72615475092733ed9940d6;235779c4a1955c2a5602161650082fee 1313 148594706 1450d099c254a6fc933976ed6078b088;77f319a649edc1e7b6264ffca4341c52 SAMEA5785593 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531056/ERR3531056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531056/ERR3531056_2.fastq.gz 1593798 WGS 756686 RANDOM 106767832;110558892 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e0402d7039246ae8ae2a87470ab0d99f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531056/ERR3531056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531056/ERR3531056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531056/756686.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531056/756686.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531056/ERR3531056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531056/ERR3531056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531056/756686.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531056/756686.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102648113;106374565 ERS3755736 ERX3548713 GENOMIC 317581349 2019-09-19 756686 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531056/756686.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531056/756686.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531056 756686 ERR3530924 755701 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530924 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530924 62e42a1a62ca3d91a76dff0cf1034fe3;4fd166bae55593688b01c411ec9651ef 1313 100608540 283a4c91d02f5fad6c645da53396a887;1576f7717a2ca10c3dde9634a48ee9bd SAMEA5785690 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530924/ERR3530924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530924/ERR3530924_2.fastq.gz 1145804 WGS 755701 RANDOM 72946649;75758513 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 16929ebf8cae6b83cd58fcaf94fe89eb ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530924/ERR3530924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530924/ERR3530924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530924/755701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530924/755701.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530924/ERR3530924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530924/ERR3530924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530924/755701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530924/755701.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70034563;72832900 ERS3755833 ERX3548810 GENOMIC 228249464 2019-09-19 755701 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530924/755701.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530924/755701.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530924 755701 ERR3530925 720950 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530925 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530925 88ddf020105b242fefb4583298c34c9a;c32a703861bb108388e2a46d57e1a140 1313 211047454 6df4a7c7a19bf32e9f586bf19c6e5545;07815a6398a91d3322a37e9dd7f01c90 SAMEA5785858 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530925/ERR3530925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530925/ERR3530925_2.fastq.gz 2190469 WGS 720950 RANDOM 150959235;153554318 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 35044a4d28a1422db523572f509986f1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530925/ERR3530925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530925/ERR3530925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530925/720950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530925/720950.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530925/ERR3530925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530925/ERR3530925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530925/720950.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530925/720950.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 145235867;147786876 ERS3756001 ERX3548978 GENOMIC 433985227 2019-09-19 720950 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530925/720950.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530925/720950.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530925 720950 ERR3530926 720953 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530926 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530926 1932a33d6519879365af924dd1ebf2a5;7a3025b89439b47def70e048a78b999e 1313 305250337 c91a4a9bb8a77ac67eb4bd9383ecba84;a737872be73a76c6f955b46678406e89 SAMEA5785855 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530926/ERR3530926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530926/ERR3530926_2.fastq.gz 3174623 WGS 720953 RANDOM 217926869;222885077 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. edcde0105c0fb86496313ba86874f013 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530926/ERR3530926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530926/ERR3530926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530926/720953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530926/720953.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530926/ERR3530926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530926/ERR3530926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530926/720953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530926/720953.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 209328527;214212216 ERS3755998 ERX3548975 GENOMIC 627914135 2019-09-19 720953 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530926/720953.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530926/720953.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530926 720953 ERR3530927 651545 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530927 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530927 2474e5a7e438af461dbe577d64ef35b6;cc733a16e92aac3cd5d2e0edaf65d00d 1313 125311332 5ed217bcd6423e2e2bb67158376bda97;2eb1ec8b1c9418d83bdc9e58bd758e8f SAMEA5786108 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530927/ERR3530927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530927/ERR3530927_2.fastq.gz 1504112 WGS 651545 RANDOM 92231921;95056884 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 39494b1207b3d1c9e88270b5c405c832 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530927/ERR3530927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530927/ERR3530927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530927/651545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530927/651545.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530927/ERR3530927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530927/ERR3530927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530927/651545.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530927/651545.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 88299007;91110931 ERS3756250 ERX3549227 GENOMIC 299569727 2019-09-19 651545 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530927/651545.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530927/651545.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530927 651545 ERR3530928 717985 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530928 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530928 443497bbf9a45d95ee784f8b063bf862;6033913c6f4cbc4484525a348af1a87f 1313 158070522 541f4795a2bb95e2e9ebc40c2d1dfc87;d47bea0e10a3769e27a9e98bf77f5d60 SAMEA5785958 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530928/ERR3530928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530928/ERR3530928_2.fastq.gz 1862231 WGS 717985 RANDOM 116549052;118273748 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 24d79c27a510cdd314131678fd6631c6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530928/ERR3530928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530928/ERR3530928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530928/717985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530928/717985.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530928/ERR3530928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530928/ERR3530928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530928/717985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530928/717985.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111520467;113238338 ERS3756100 ERX3549077 GENOMIC 365819686 2019-09-19 717985 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530928/717985.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530928/717985.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530928 717985 ERR3530930 721012 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530930 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530930 4b89b5e75527b6c587b950673adb6119;24dd624e06e57aa1a1baf738c0207b16 1313 132891524 14c9fd051280b0c9e28225c103a805f7;250006675e3c75281c79a71e3038d4d3 SAMEA5785797 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530930/ERR3530930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530930/ERR3530930_2.fastq.gz 1381580 WGS 721012 RANDOM 95444486;96939879 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 38fbdd722d8ffdcc8f7f516b54d279da ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530930/ERR3530930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530930/ERR3530930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530930/721012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530930/721012.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530930/ERR3530930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530930/ERR3530930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530930/721012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530930/721012.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91921963;93388525 ERS3755940 ERX3548917 GENOMIC 273932611 2019-09-19 721012 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530930/721012.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530930/721012.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530930 721012 ERR3530929 717821 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530929 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530929 c58ade6ba523b60f0a7d66458586481a;8b5766a0280154c82a70798234321f61 1313 186573978 a0c231c6fef393f44735b258d1e6ff94;01944e024ab1f56553574369814d33be SAMEA5786058 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530929/ERR3530929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530929/ERR3530929_2.fastq.gz 2169147 WGS 717821 RANDOM 134957102;141322102 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fff39f04e13d08992589e174835bf783 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530929/ERR3530929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530929/ERR3530929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530929/717821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530929/717821.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530929/ERR3530929_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530929/ERR3530929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530929/717821.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530929/717821.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129226522;135575973 ERS3756200 ERX3549177 GENOMIC 432435999 2019-09-19 717821 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530929/717821.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530929/717821.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530929 717821 ERR3530931 759524 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530931 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530931 9122d808340e3d2f7d9d98e932da704e;1d63da2f5e4bb9da1138e50f6a288939 1313 157356369 092f7b176ec2ef8a31089efbcd38f82d;ef632746901587a58ba93a8734963de5 SAMEA5785483 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530931/ERR3530931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530931/ERR3530931_2.fastq.gz 1866681 WGS 759524 RANDOM 115792808;118940765 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ddd388a35cd81f218699cfec2c4d7a48 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530931/ERR3530931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530931/ERR3530931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530931/759524.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530931/759524.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530931/ERR3530931_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530931/ERR3530931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530931/759524.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530931/759524.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 110817211;113956645 ERS3755626 ERX3548603 GENOMIC 371812144 2019-09-19 759524 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530931/759524.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530931/759524.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530931 759524 ERR3530932 731068 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530932 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530932 9fe3924d4f794ed089b81a645d8f664e;febb97370115a042e0da09a54b4b9d61 1313 196793787 60445d32fe10e2b5ef66a7df420a420c;306ad7ea5f0edfed194b4c7d7e6198e2 SAMEA5785783 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530932/ERR3530932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530932/ERR3530932_2.fastq.gz 2121804 WGS 731068 RANDOM 142737655;144860514 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2316da4f723c77c14ada7885ea9d98ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530932/ERR3530932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530932/ERR3530932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530932/731068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530932/731068.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530932/ERR3530932_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530932/ERR3530932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530932/731068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530932/731068.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137240904;139348727 ERS3755926 ERX3548903 GENOMIC 423426464 2019-09-19 731068 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530932/731068.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530932/731068.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530932 731068 ERR3530933 651034 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530933 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530933 924c39944f60cfc364017ce8ef8d1e64;4e4f6618b289deb22d94516f25fd030c 1313 142294983 e12d8f6dda24629286dbd34eecb47d47;afb6ec19e447aca80793c98871e91a6c SAMEA5786114 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530933/ERR3530933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530933/ERR3530933_2.fastq.gz 1563387 WGS 651034 RANDOM 103604608;105960446 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 75929664d86922a35fb10a4328ae4ecd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530933/ERR3530933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530933/ERR3530933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530933/651034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530933/651034.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530933/ERR3530933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530933/ERR3530933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530933/651034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530933/651034.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99592362;101924553 ERS3756256 ERX3549233 GENOMIC 312315461 2019-09-19 651034 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530933/651034.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530933/651034.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530933 651034 ERR3530934 717941 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530934 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530934 e81c94680effb70bd5c1c162e76a732d;acc6a3b7b3b8c4d3538978d75ddfa118 1313 141888775 b5d6a111667453ecf96313e1276deccf;5904e701d6f05a35977d1cdb9f0f7fd8 SAMEA5785999 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530934/ERR3530934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530934/ERR3530934_2.fastq.gz 1628372 WGS 717941 RANDOM 102609588;106820675 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a960f48046196cb8dfa4d1b2a262358a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530934/ERR3530934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530934/ERR3530934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530934/717941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530934/717941.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530934/ERR3530934_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530934/ERR3530934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530934/717941.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530934/717941.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98260148;102463005 ERS3756141 ERX3549118 GENOMIC 320612045 2019-09-19 717941 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530934/717941.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530934/717941.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530934 717941 ERR3530935 760594 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530935 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530935 6bdb584f63ebc53d3e55f6f7560785e2;161c0fb18e54c44d7ea9b7f75d04a81d 1313 138037355 5cec2be99251dd28e5579fe1e401d668;fa46add22fb740a51c9068d5ef975bbd SAMEA5785443 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530935/ERR3530935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530935/ERR3530935_2.fastq.gz 1506333 WGS 760594 RANDOM 100465947;102284142 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 38804ef9e0a3991fe4fafea5f3103403 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530935/ERR3530935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530935/ERR3530935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530935/760594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530935/760594.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530935/ERR3530935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530935/ERR3530935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530935/760594.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530935/760594.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 96630425;98421699 ERS3755586 ERX3548563 GENOMIC 299583316 2019-09-19 760594 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530935/760594.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530935/760594.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530935 760594 ERR3530936 717936 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530936 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530936 93a74af70f16e54c264f81b6829824a4;3bf597cb621798aa5354667a4f6e153a 1313 145398119 fdc475a0fa77ffce97eca10a1b9e2a20;ac0dfe00f501783816f215e65a75635d SAMEA5786004 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530936/ERR3530936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530936/ERR3530936_2.fastq.gz 1751085 WGS 717936 RANDOM 108119221;109511501 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cb26d6715cd51b08ff718081fd310acd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530936/ERR3530936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530936/ERR3530936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530936/717936.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530936/717936.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530936/ERR3530936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530936/ERR3530936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530936/717936.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530936/717936.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 103418697;104799336 ERS3756146 ERX3549123 GENOMIC 348670702 2019-09-19 717936 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530936/717936.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530936/717936.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530936 717936 ERR3530937 308626 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530937 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530937 ca3321eb821caa829b259cfa90be461f;e0c131bed4a734551e12b215117f85ef 1313 227604864 251ab7b5c493557470a1a09b302b0c7c;f90fab7e36bf41ba4d3a47fee5e76106 SAMEA5786168 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530937/ERR3530937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530937/ERR3530937_2.fastq.gz 2514006 WGS 308626 RANDOM 165470817;167615322 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 833c8737eb4416d52fde000ac088f222 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530937/ERR3530937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530937/ERR3530937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530937/308626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530937/308626.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530937/ERR3530937_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530937/ERR3530937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530937/308626.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530937/308626.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 159026878;161173219 ERS3756310 ERX3549287 GENOMIC 497963897 2019-09-19 308626 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530937/308626.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530937/308626.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530937 308626 ERR3530938 720260 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530938 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530938 3470521263428da9ae1cfb3f3e429aee;893d377f22e6837047f4457f08adffb6 1313 62883402 1775c56ea0fd6713ea87b2ba414b5b79;9e7c6f4cab7f5c00705d059efff7099b SAMEA5785874 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530938/ERR3530938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530938/ERR3530938_2.fastq.gz 696876 WGS 720260 RANDOM 45654882;46830549 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6d2c5095d49974bb9e32dc0534f9a298 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530938/ERR3530938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530938/ERR3530938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530938/720260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530938/720260.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530938/ERR3530938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530938/ERR3530938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530938/720260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530938/720260.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 43897053;45066687 ERS3756017 ERX3548994 GENOMIC 138306981 2019-09-19 720260 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530938/720260.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530938/720260.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530938 720260 ERR3530940 756605 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530940 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530940 32a2b46507f538b9095b8e6b8d5d4e2f;4c3691b8147b69ea446f7708e52e3b3a 1313 124164866 054b3ca3d8bc8142724f2a0946f9d5c6;bea6afc691f1715f0bfe394ae889f051 SAMEA5785672 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530940/ERR3530940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530940/ERR3530940_2.fastq.gz 1337559 WGS 756605 RANDOM 89350022;92162158 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6f49accc256f269fe6ff8816b567a749 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530940/ERR3530940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530940/ERR3530940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530940/756605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530940/756605.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530940/ERR3530940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530940/ERR3530940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530940/756605.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530940/756605.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86006050;88778740 ERS3755815 ERX3548792 GENOMIC 265360263 2019-09-19 756605 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530940/756605.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530940/756605.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530940 756605 ERR3530939 753476 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530939 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530939 092fdc2c497def5755d2591cf6840a64;71b3d61a885d09a1ae42c32aa4cf15fd 1313 80210464 9851a9d9c071a98e44dba4e9eb43177d;9eeaec4d694ee4f28274c732968bdd6d SAMEA5785716 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530939/ERR3530939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530939/ERR3530939_2.fastq.gz 883686 WGS 753476 RANDOM 58634410;59048538 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4e8e370dada36e25d8fc4fe7feeca2f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530939/ERR3530939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530939/ERR3530939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530939/753476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530939/753476.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530939/ERR3530939_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530939/ERR3530939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530939/753476.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530939/753476.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56405450;56821056 ERS3755859 ERX3548836 GENOMIC 174529865 2019-09-19 753476 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530939/753476.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530939/753476.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530939 753476 ERR3530941 313923 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530941 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530941 16ebf6e49d276bba82318a9cce2ec039;38c549d5a798a7822564c6a1fdccc034 1313 223625388 e52dadbbb32b53837687849328cf14bc;da33d94f0bd0cb2fa0e5e1fcd2a43798 SAMEA5786133 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530941/ERR3530941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530941/ERR3530941_2.fastq.gz 2518652 WGS 313923 RANDOM 160453987;163849976 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4b4838e91b56144efecaa0a6b142d94d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530941/ERR3530941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530941/ERR3530941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530941/313923.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530941/313923.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530941/ERR3530941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530941/ERR3530941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530941/313923.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530941/313923.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 153841668;157258075 ERS3756275 ERX3549252 GENOMIC 477158445 2019-09-19 313923 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530941/313923.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530941/313923.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530941 313923 ERR3531057 757990 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531057 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531057 edbbebc6d86ca757ca5f0fc9f362b4e2;52f4b7ed736600806b963f6339d2cce7 1313 173829835 b9e1b2796d1f44b72d8e416fc3d68c96;12ad5a9b4dd8f6f4ce601b5214aea134 SAMEA5785540 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531057/ERR3531057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531057/ERR3531057_2.fastq.gz 2104374 WGS 757990 RANDOM 128514931;131965496 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. af91e0744b0f1687719b789855f2c3a3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531057/ERR3531057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531057/ERR3531057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531057/757990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531057/757990.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531057/ERR3531057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531057/ERR3531057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531057/757990.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531057/757990.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122989949;126438993 ERS3755683 ERX3548660 GENOMIC 419630106 2019-09-19 757990 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531057/757990.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531057/757990.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531057 757990 ERR3531061 753484 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531061 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531061 bb531273cf67d800b0e00fe008ef7fab;e6c494f2075a89a43ac36aae58724346 1313 185458975 50a7509093bcb56758d617085d8dd9e3;b902fea8e5c8e3b5ae9c15716bafee16 SAMEA5785708 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531061/ERR3531061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531061/ERR3531061_2.fastq.gz 2066413 WGS 753484 RANDOM 136790001;135776940 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 708751e7a77038df43993c7901e858ed ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531061/ERR3531061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531061/ERR3531061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531061/753484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531061/753484.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531061/ERR3531061_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531061/ERR3531061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531061/753484.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531061/753484.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 131313473;130317908 ERS3755851 ERX3548828 GENOMIC 409646574 2019-09-19 753484 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531061/753484.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531061/753484.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531061 753484 ERR3530945 300844 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530945 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530945 458d3df4904d22617f9e3efed5ba0d39;2a392f06dc455de499e70d541d3d63d7 1313 119795581 625a7acaa17e533d3b919a7da77ce7c8;65d73cc2bc1723c37d7323849826e578 SAMEA5786296 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530945/ERR3530945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530945/ERR3530945_2.fastq.gz 1406938 WGS 300844 RANDOM 86901688;87922224 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 44ae5feb3d7ae701689f4886c58a7218 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530945/ERR3530945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530945/ERR3530945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530945/300844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530945/300844.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530945/ERR3530945_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530945/ERR3530945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530945/300844.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530945/300844.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83459803;84459181 ERS3756438 ERX3549415 GENOMIC 277698829 2019-09-19 300844 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530945/300844.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530945/300844.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530945 300844 ERR3530943 720225 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530943 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530943 8ac53d5ff8b665f6d60867179aa9030a;6b83a4c176366885dc16190f5f9aa61b 1313 240476994 3ae8382ad56b1e8ce2b72599df920f85;2a05d651e060a7cd41883a74f0c06f30 SAMEA5785909 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530943/ERR3530943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530943/ERR3530943_2.fastq.gz 2739435 WGS 720225 RANDOM 176459349;176963452 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4dcf63781c2e57295f5c5e44d7565a8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530943/ERR3530943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530943/ERR3530943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530943/720225.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530943/720225.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530943/ERR3530943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530943/ERR3530943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530943/720225.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530943/720225.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 169244938;169741506 ERS3756052 ERX3549029 GENOMIC 541210868 2019-09-19 720225 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530943/720225.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530943/720225.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530943 720225 ERR3530946 657389 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530946 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530946 e7c805a3ce2766534bf3594c65582a9c;b767b94476643cac3817b3a5fe0bcfc8 1313 144383255 fe6a4403b32695e1b666350441843ae2;4dc206a0cf593b47eae4174f6dc5d078 SAMEA5786084 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530946/ERR3530946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530946/ERR3530946_2.fastq.gz 1584277 WGS 657389 RANDOM 105318317;106979791 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9b5eef7284ce2de81accc0ee249bf97a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530946/ERR3530946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530946/ERR3530946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530946/657389.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530946/657389.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530946/ERR3530946_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530946/ERR3530946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530946/657389.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530946/657389.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101227313;102875612 ERS3756226 ERX3549203 GENOMIC 314852587 2019-09-19 657389 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530946/657389.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530946/657389.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530946 657389 ERR3530947 720943 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530947 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530947 73f4c31f1d2255542e0a73c97d1e8ae6;c1ba956230517b7bfe180a79a81871da 1313 64534255 eeb460062680abb33303aada2917538d;2e4aaf8aabc927e0e1bf8a96e325a7df SAMEA5785865 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530947/ERR3530947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530947/ERR3530947_2.fastq.gz 673481 WGS 720943 RANDOM 46617511;47060226 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 456cce8384115f43ac240012ab3ad331 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530947/ERR3530947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530947/ERR3530947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530947/720943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530947/720943.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530947/ERR3530947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530947/ERR3530947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530947/720943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530947/720943.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 44945997;45381269 ERS3756008 ERX3548985 GENOMIC 132951535 2019-09-19 720943 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530947/720943.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530947/720943.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530947 720943 ERR3530948 759538 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530948 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530948 d7c42587ccdd053b0976f36be9b30d6e;13a3f143fe2bb85dbd2b5774eb3ede37 1313 109573972 3d1f6a86ac302fd18c2777554b202ac1;550a59d6114316e556873c3878036e56 SAMEA5785469 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530948/ERR3530948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530948/ERR3530948_2.fastq.gz 1282909 WGS 759538 RANDOM 79937898;82726223 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 75cbc1991c7e86feefc19ede8c234311 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530948/ERR3530948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530948/ERR3530948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530948/759538.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530948/759538.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530948/ERR3530948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530948/ERR3530948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530948/759538.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530948/759538.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 76637272;79418768 ERS3755612 ERX3548589 GENOMIC 254105664 2019-09-19 759538 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530948/759538.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530948/759538.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530948 759538 ERR3530949 717823 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530949 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530949 a0e1681a82e7c2c7c95b3ec2de976189;3b0486abdbd1ac3643f1766f6329423f 1313 163658216 2bb183324d0b6dc7b1da77c4a245173a;a6aa2b10cee243a71d7970c5fa23e011 SAMEA5786056 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530949/ERR3530949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530949/ERR3530949_2.fastq.gz 1916414 WGS 717823 RANDOM 119314626;124106778 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cf4e7998f42f533f1d2fb536fd967efe ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530949/ERR3530949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530949/ERR3530949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530949/717823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530949/717823.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530949/ERR3530949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530949/ERR3530949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530949/717823.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530949/717823.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114158577;118938233 ERS3756198 ERX3549175 GENOMIC 382657543 2019-09-19 717823 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530949/717823.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530949/717823.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530949 717823 ERR3530950 753412 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530950 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530950 9758b781e723d12b1be53ad02b09aa55;ebed4a99c5a63b2f417ef0ff7cbd429c 1313 152501624 7517e225b0f987d2cbaea373549aa3dc;36dbc881d1aa691f4c520d39af329c98 SAMEA5785778 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530950/ERR3530950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530950/ERR3530950_2.fastq.gz 1663310 WGS 753412 RANDOM 109354110;113811620 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b77abe4778d08af5fd64d9b364e421b5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530950/ERR3530950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530950/ERR3530950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530950/753412.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530950/753412.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530950/ERR3530950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530950/ERR3530950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530950/753412.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530950/753412.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104981265;109419587 ERS3755921 ERX3548898 GENOMIC 330832332 2019-09-19 753412 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530950/753412.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530950/753412.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530950 753412 ERR3530952 308587 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530952 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530952 1bf76d6b79a5728d03a2e3a889964ef4;0ed9a62cd711eaaa1ec9b2cae667687f 1313 167339229 46852deccc5d272f088aa29d47aa0f2e;12055d14a73398825f32ccdd7ee311fa SAMEA5786201 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530952/ERR3530952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530952/ERR3530952_2.fastq.gz 1870795 WGS 308587 RANDOM 122387074;124092279 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3c82206da2c5b1adad4b82c75de8e33c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530952/ERR3530952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530952/ERR3530952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530952/308587.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530952/308587.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530952/ERR3530952_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530952/ERR3530952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530952/308587.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530952/308587.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117421791;119120100 ERS3756343 ERX3549320 GENOMIC 370709511 2019-09-19 308587 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530952/308587.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530952/308587.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530952 308587 ERR3531065 753466 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531065 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531065 a00f40f2239b01c87f6844cf427e717c;e82dbdc5492e852390f49e1177f47540 1313 1296208847 bfef255bef391c11d43a68d982a123fd;f6f661ae6584616066994ccfa622dd0d SAMEA5785724 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531065/ERR3531065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531065/ERR3531065_2.fastq.gz 14256445 WGS 753466 RANDOM 924443413;956679155 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 608392537f06557a105d47e86016ecfa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531065/ERR3531065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531065/ERR3531065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531065/753466.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531065/753466.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531065/ERR3531065_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531065/ERR3531065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531065/753466.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531065/753466.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 884248477;916374691 ERS3755867 ERX3548844 GENOMIC 2820953114 2019-09-19 753466 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531065/753466.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531065/753466.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531065 753466 ERR3530953 720238 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530953 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530953 3271a4900067f6b10fdbe6d88d3fd6a3;d984a3f1e5b99c3b0a8a63ef6f940477 1313 173576538 4de0c1138a38e8680e7a74e8906bcd8d;1ac469e620734ff9e18a4b2ffd87a178 SAMEA5785896 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530953/ERR3530953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530953/ERR3530953_2.fastq.gz 1950574 WGS 720238 RANDOM 126285233;128398726 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a480f299c62751e2314e5685f868363c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530953/ERR3530953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530953/ERR3530953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530953/720238.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530953/720238.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530953/ERR3530953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530953/ERR3530953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530953/720238.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530953/720238.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 121028721;123150056 ERS3756039 ERX3549016 GENOMIC 380661129 2019-09-19 720238 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530953/720238.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530953/720238.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530953 720238 ERR3530955 757987 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530955 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530955 a620de71b14b833b1a21fafaba33b356;5e1563e02b482561cbe850b9402160f0 1313 87557962 05aad2ee2a8127ac83707a55b657a5c2;0ebdf023a6c679761f80f4300253cab3 SAMEA5785543 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530955/ERR3530955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530955/ERR3530955_2.fastq.gz 1074702 WGS 757987 RANDOM 65103089;66131913 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3b6a628ad6ce4742ac3af0ebfe470cb7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530955/ERR3530955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530955/ERR3530955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530955/757987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530955/757987.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530955/ERR3530955_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530955/ERR3530955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530955/757987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530955/757987.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 62300519;63328871 ERS3755686 ERX3548663 GENOMIC 208389052 2019-09-19 757987 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530955/757987.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530955/757987.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530955 757987 ERR3530954 720233 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530954 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530954 15a48fa40b5bb2c2146ff778f531c759;d103156c1c24eee955b4e10833396a63 1313 232380636 ed2fc02b1ae5e399b5f2b1b3fb8143dc;78a6439355d9d3e26e212da72e85830c SAMEA5785901 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530954/ERR3530954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530954/ERR3530954_2.fastq.gz 2551095 WGS 720233 RANDOM 164823655;173159582 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 68b9347ef5747143fa4ccc5eac517108 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530954/ERR3530954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530954/ERR3530954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530954/720233.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530954/720233.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530954/ERR3530954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530954/ERR3530954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530954/720233.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530954/720233.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 158259455;166581746 ERS3756044 ERX3549021 GENOMIC 504010414 2019-09-19 720233 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530954/720233.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530954/720233.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530954 720233 ERR3531074 753486 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531074 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531074 6ddcc7dd95072757fd66b8bb96a3b2c5;c9497d0fcc3e0bb2cdc6abf2cd074441 1313 135037064 5993e367b5d7f4ad96de885ee441e029;88f344cdd990dab3d795d7b51ddb4b70 SAMEA5785706 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531074/ERR3531074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531074/ERR3531074_2.fastq.gz 1504709 WGS 753486 RANDOM 99667234;99352468 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 808738be8edd26587eb67f083f1d4a9e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531074/ERR3531074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531074/ERR3531074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531074/753486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531074/753486.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531074/ERR3531074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531074/ERR3531074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531074/753486.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531074/753486.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 95782413;95481064 ERS3755849 ERX3548826 GENOMIC 299618585 2019-09-19 753486 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531074/753486.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531074/753486.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531074 753486 ERR3530957 652827 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530957 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530957 d14fd153adda6d2c237ffeb12ab3dc00;231662fa7d1f15461f362bea470c0984 1313 140461552 ab8271404f68071b9704b2571daa80b5;b5490db8e14964957e183d0afb0a2b7b SAMEA5786097 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530957/ERR3530957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530957/ERR3530957_2.fastq.gz 1562707 WGS 652827 RANDOM 101478213;105779108 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a16deea6db5ee3ac165f924cd729a432 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530957/ERR3530957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530957/ERR3530957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530957/652827.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530957/652827.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530957/ERR3530957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530957/ERR3530957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530957/652827.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530957/652827.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97443416;101729666 ERS3756239 ERX3549216 GENOMIC 311941031 2019-09-19 652827 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530957/652827.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530957/652827.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530957 652827 ERR3530958 756675 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530958 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530958 9a1b201f481002aba9f9cb5c5e8bbdb9;36ad1e12204e22ea4cc5939d30978489 1313 120748910 905184612521ee07f7749f17037e95eb;569b37282e4e6492e34264fb8665c7e9 SAMEA5785603 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530958/ERR3530958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530958/ERR3530958_2.fastq.gz 1305576 WGS 756675 RANDOM 87457862;89286105 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 047eadd4bec769951dd60a8c098f1a14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530958/ERR3530958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530958/ERR3530958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530958/756675.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530958/756675.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530958/ERR3530958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530958/ERR3530958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530958/756675.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530958/756675.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84197912;85989350 ERS3755746 ERX3548723 GENOMIC 259190419 2019-09-19 756675 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530958/756675.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530958/756675.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530958 756675 ERR3530959 756633 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530959 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530959 a6f808d70644d7f39aa3b63c3e1f420b;7562166d197bbe80484fb71a8045418c 1313 145548215 985652c9840490b25463ed6760e8c1e9;65d61dc6b5d2fa8d7a147aba18297c71 SAMEA5785644 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530959/ERR3530959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530959/ERR3530959_2.fastq.gz 1578590 WGS 756633 RANDOM 105956285;107550527 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ad3bcb1cd0bb4ebf11c4d2379366dd37 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530959/ERR3530959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530959/ERR3530959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530959/756633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530959/756633.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530959/ERR3530959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530959/ERR3530959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530959/756633.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530959/756633.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101853248;103412843 ERS3755787 ERX3548764 GENOMIC 314127680 2019-09-19 756633 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530959/756633.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530959/756633.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530959 756633 ERR3530960 308619 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530960 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530960 b3cdceb9af4260ce0cfe6141c7c71a87;cbcf65d866506263365a1ce8aef6b5c3 1313 89918225 f50264ad1cdef1f174fda7589f93a2a4;bcbe04db7ddd657d6fd383b33d77886d SAMEA5786175 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530960/ERR3530960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530960/ERR3530960_2.fastq.gz 986380 WGS 308619 RANDOM 65349321;66651960 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3da0f8e5f93bf6785fd27b7bba210330 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530960/ERR3530960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530960/ERR3530960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530960/308619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530960/308619.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530960/ERR3530960_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530960/ERR3530960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530960/308619.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530960/308619.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 62854004;64136095 ERS3756317 ERX3549294 GENOMIC 195132086 2019-09-19 308619 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530960/308619.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530960/308619.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530960 308619 ERR3530961 304280 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530961 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530961 183db15a515d39172ee38d697caeda59;e973c1d8d37fbd43852f9377842efc38 1313 164982598 16bb155a2e908d9bd3badf21b50c239b;02d354d8620fa08bc3fda89ceac92840 SAMEA5786245 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530961/ERR3530961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530961/ERR3530961_2.fastq.gz 1906974 WGS 304280 RANDOM 121211446;123033383 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 175183f02df5b6d5a406b6b5605524c2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530961/ERR3530961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530961/ERR3530961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530961/304280.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530961/304280.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530961/ERR3530961_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530961/ERR3530961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530961/304280.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530961/304280.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116200060;118009501 ERS3756387 ERX3549364 GENOMIC 379157681 2019-09-19 304280 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530961/304280.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530961/304280.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530961 304280 ERR3530962 717959 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530962 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530962 125e6afcd9576b59e6b576615de9f7ea;b0ea82dfd9aab7456709769ee855d1f9 1313 120002076 f584efd2b8d1af586aec9be1fdf0e1bd;8c9f7e712e04738bab3ed4eb7f2a227c SAMEA5785981 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530962/ERR3530962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530962/ERR3530962_2.fastq.gz 1406845 WGS 717959 RANDOM 88583445;89765712 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 116740ee717a1db76fd17f858d747e23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530962/ERR3530962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530962/ERR3530962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530962/717959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530962/717959.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530962/ERR3530962_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530962/ERR3530962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530962/717959.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530962/717959.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84934680;86105424 ERS3756123 ERX3549100 GENOMIC 278775983 2019-09-19 717959 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530962/717959.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530962/717959.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530962 717959 ERR3530963 717943 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530963 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530963 0648c87034b48b63c414bdc5ec5699ca;32979fb8fbcc51276b43d9e56ff3b265 1313 152618084 3c56c03412d16f3cce17d13362e0e0dc;d2675a5e42d7f5f2dec4096ad322140d SAMEA5785997 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530963/ERR3530963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530963/ERR3530963_2.fastq.gz 1770242 WGS 717943 RANDOM 111879085;114527789 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ea590f2c9c8be683bd04f868d5384077 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530963/ERR3530963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530963/ERR3530963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530963/717943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530963/717943.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530963/ERR3530963_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530963/ERR3530963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530963/717943.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530963/717943.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 107165994;109806735 ERS3756139 ERX3549116 GENOMIC 351646021 2019-09-19 717943 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530963/717943.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530963/717943.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530963 717943 ERR3530964 304268 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530964 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530964 8f913dc868c6483578b956140211e978;ac8ff2d9d4cd9a6585b4d17a210e3a76 1313 133931298 1fd49ce3493cb429e0ebf11e35058784;311eb9fb0fa1f4aa955e82bb303ee5a0 SAMEA5786256 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530964/ERR3530964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530964/ERR3530964_2.fastq.gz 1567612 WGS 304268 RANDOM 98690064;99331571 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 670304a8536e657ee3b55d15984faf73 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530964/ERR3530964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530964/ERR3530964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530964/304268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530964/304268.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530964/ERR3530964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530964/ERR3530964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530964/304268.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530964/304268.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 94587808;95217363 ERS3756398 ERX3549375 GENOMIC 305564833 2019-09-19 304268 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530964/304268.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530964/304268.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530964 304268 ERR3530965 753495 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530965 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530965 6456d7da055c7b2abc5faaca9cfbe61d;825c96b3688d8597bd2123185d008c97 1313 150031372 a9ea05dc1f40c8e69fd9ec77f4672e45;ceefb3f7dcbd1f15dd99222f85280661 SAMEA5785697 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530965/ERR3530965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530965/ERR3530965_2.fastq.gz 1677082 WGS 753495 RANDOM 110581806;110234617 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 027fb16ecbfa91bac7ec0f5b816907da ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530965/ERR3530965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530965/ERR3530965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530965/753495.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530965/753495.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530965/ERR3530965_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530965/ERR3530965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530965/753495.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530965/753495.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106158163;105822928 ERS3755840 ERX3548817 GENOMIC 332539917 2019-09-19 753495 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530965/753495.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530965/753495.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530965 753495 ERR3531090 753494 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531090 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531090 edac4b6b75f8bcb7902fdd7ff1488bae;2acabb4aeb42c2702a5e45c5cccd0996 1313 110969067 48cfc86b32b5daed9372ad43e3edfeae;73d47cb913df99797e4964135565b59c SAMEA5785698 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531090/ERR3531090_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531090/ERR3531090_2.fastq.gz 1238550 WGS 753494 RANDOM 81712002;81647222 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0f6ab9fba5bf3e779656b2c3d19c7862 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531090/ERR3531090_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531090/ERR3531090_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531090/753494.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531090/753494.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531090/ERR3531090_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531090/ERR3531090_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531090/753494.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531090/753494.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 78574370;78515092 ERS3755841 ERX3548818 GENOMIC 246146754 2019-09-19 753494 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531090/753494.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531090/753494.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531090 753494 ERR3530967 753467 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530967 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530967 94d01f7ec399d20296ef5bdc28b836c9;b575369c067217810d41001e18f1a8d1 1313 1031064262 7ba74cddc824075e271c6cd407766b26;a4e067c87532ccf40650b60cc6b3b729 SAMEA5785723 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530967/ERR3530967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530967/ERR3530967_2.fastq.gz 11320116 WGS 753467 RANDOM 732878570;763357778 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 30ad70e7b1ed00c546e7a0c831ff28c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530967/ERR3530967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530967/ERR3530967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530967/753467.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530967/753467.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530967/ERR3530967_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530967/ERR3530967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530967/753467.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530967/753467.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 701052253;731438593 ERS3755866 ERX3548843 GENOMIC 2247034825 2019-09-19 753467 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530967/753467.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530967/753467.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530967 753467 ERR3530968 756610 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530968 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530968 07e0431219d14bb605771c203c08e819;0f2e722c976a60efe958385e9acb8a15 1313 183116822 bd12e1cc34d254b16de48cc0b707ce23;944fedf5e9c3281407eddc4acb8829a8 SAMEA5785667 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530968/ERR3530968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530968/ERR3530968_2.fastq.gz 1941247 WGS 756610 RANDOM 129221166;136999270 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 787217852e01a4136df7603165058fc8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530968/ERR3530968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530968/ERR3530968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530968/756610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530968/756610.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530968/ERR3530968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530968/ERR3530968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530968/756610.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530968/756610.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124109323;131770366 ERS3755810 ERX3548787 GENOMIC 386230756 2019-09-19 756610 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530968/756610.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530968/756610.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530968 756610 ERR3530970 753499 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530970 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530970 fbe62095f495732eb0cbd8b358e66f56;c715e8c5b5142d802cb8915a7df53588 1313 119645013 83a27e3b638766036618fd4772e0b981;cf235e401289ee160006c05f1f474d76 SAMEA5785695 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530970/ERR3530970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530970/ERR3530970_2.fastq.gz 1308554 WGS 753499 RANDOM 86318795;88786098 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. defe1650101528f00eeaf3cf999237aa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530970/ERR3530970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530970/ERR3530970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530970/753499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530970/753499.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530970/ERR3530970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530970/ERR3530970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530970/753499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530970/753499.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82991842;85461928 ERS3755838 ERX3548815 GENOMIC 259586154 2019-09-19 753499 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530970/753499.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530970/753499.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530970 753499 ERR3531094 756598 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531094 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531094 749a9110fb5ff27c9c53bd512ca9e78e;8b2209b3eada5bd00d160b8cd3b3df04 1313 204711032 02f1f2ab69fe0e060d9d94a7160b72fd;721cfed3fc485ea530a7a39be26e70a1 SAMEA5785679 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531094/ERR3531094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531094/ERR3531094_2.fastq.gz 2193134 WGS 756598 RANDOM 147090250;151162632 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7286ed82cb7cf7f5c129b4f2aabdf9b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531094/ERR3531094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531094/ERR3531094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531094/756598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531094/756598.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531094/ERR3531094_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531094/ERR3531094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531094/756598.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531094/756598.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 141329434;145350219 ERS3755822 ERX3548799 GENOMIC 434829712 2019-09-19 756598 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531094/756598.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531094/756598.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531094 756598 ERR3531111 757992 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531111 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531111 cdffebb2f61bf35be372d0668468023e;32777aaa583b3f0182a5dc24ffc7a044 1313 115986449 e03ff08013b80ecc94a3fff9aa2e704d;0c050c0d15eefbc36bf906a9cf5e9f4e SAMEA5785538 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531111/ERR3531111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531111/ERR3531111_2.fastq.gz 1391940 WGS 757992 RANDOM 85610167;88046941 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 201afe761e032bb6b586a824c9c57976 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531111/ERR3531111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531111/ERR3531111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531111/757992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531111/757992.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531111/ERR3531111_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531111/ERR3531111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531111/757992.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531111/757992.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82072452;84497174 ERS3755681 ERX3548658 GENOMIC 277770415 2019-09-19 757992 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531111/757992.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531111/757992.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531111 757992 ERR3530972 756614 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530972 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530972 7754606a2649c53a128cd89fad717db5;bdf183d49d420f82ed9816bd2520918d 1313 150668767 64e980117980b8d30a4d15542caf6232;d8e921ffc199205c071f18875d6e1dd6 SAMEA5785663 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530972/ERR3530972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530972/ERR3530972_2.fastq.gz 1642104 WGS 756614 RANDOM 110430128;111135471 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7681634687fa334bd25ecffd9a75e792 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530972/ERR3530972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530972/ERR3530972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530972/756614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530972/756614.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530972/ERR3530972_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530972/ERR3530972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530972/756614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530972/756614.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106139709;106824622 ERS3755806 ERX3548783 GENOMIC 327641781 2019-09-19 756614 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530972/756614.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530972/756614.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530972 756614 ERR3530973 757972 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530973 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530973 63f3dd80f961829f6661926a5d48a132;7ef165ba65d645e25a924cb3a88cec69 1313 80771642 15110b8ca963a0e643e62ac5de453a1c;db5037dfb83a7a259c710051120870c4 SAMEA5785558 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530973/ERR3530973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530973/ERR3530973_2.fastq.gz 978020 WGS 757972 RANDOM 59869125;61483493 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 329e9e7d65a4e809beb052d437f4a94a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530973/ERR3530973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530973/ERR3530973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530973/757972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530973/757972.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530973/ERR3530973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530973/ERR3530973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530973/757972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530973/757972.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57366653;58978842 ERS3755701 ERX3548678 GENOMIC 194431994 2019-09-19 757972 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530973/757972.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530973/757972.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530973 757972 ERR3530974 757977 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530974 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530974 ca62aee9beb610f0616d872185e321c2;656b2ed6361e4b8030dfa74f4d01fa20 1313 228804831 169daa8c82a0414ae9c625a2da146b4a;88fd20cb0e03921d68194745a728e96d SAMEA5785553 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530974/ERR3530974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530974/ERR3530974_2.fastq.gz 2795337 WGS 757977 RANDOM 168406328;173227181 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cfefda6780e671d8b51c0661374e74bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530974/ERR3530974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530974/ERR3530974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530974/757977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530974/757977.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530974/ERR3530974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530974/ERR3530974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530974/757977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530974/757977.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 161052156;165850007 ERS3755696 ERX3548673 GENOMIC 552319613 2019-09-19 757977 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530974/757977.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530974/757977.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530974 757977 ERR3530975 660180 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530975 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530975 885d758c3f821e79fe9bdf306bea773c;f6a7677a65cc4c5c9a8e8f80bd16d7bf 1313 276569589 3d2b22c012d2dcc820c34f95bf6dd5c3;48c837563162f71d1b8e61023938bc73 SAMEA5786074 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530975/ERR3530975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530975/ERR3530975_2.fastq.gz 3249617 WGS 660180 RANDOM 196363772;214108654 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cc04fa7454509283d873d15bf50e0c8f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530975/ERR3530975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530975/ERR3530975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530975/660180.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530975/660180.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530975/ERR3530975_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530975/ERR3530975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530975/660180.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530975/660180.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 187376079;205121980 ERS3756216 ERX3549193 GENOMIC 646503307 2019-09-19 660180 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530975/660180.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530975/660180.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530975 660180 ERR3530976 717916 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530976 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530976 dfb9d210d4bf76d2624c182b43126969;1e7ac1f8c3d420b693332e4a71a9dd62 1313 98423911 5b393a753a75454c5b2176e4cbd32e4a;8f85c42221df7b90a700dc72fff2d818 SAMEA5786015 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530976/ERR3530976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530976/ERR3530976_2.fastq.gz 1151531 WGS 717916 RANDOM 72664879;73995250 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 65d515c4c971198eb66be81c163eb398 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530976/ERR3530976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530976/ERR3530976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530976/717916.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530976/717916.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530976/ERR3530976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530976/ERR3530976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530976/717916.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530976/717916.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 69748799;71063878 ERS3756157 ERX3549134 GENOMIC 230075410 2019-09-19 717916 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530976/717916.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530976/717916.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530976 717916 ERR3531114 756648 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531114 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531114 39731bcf15c7cfa6d51b2e7c8810b166;d9595cc534613dc10951eddc0e6bb61a 1313 117923204 bd308e00ed31b63a511cddd1b04436ea;16d5180640f2ffc543e4e7c06d15a92a SAMEA5785630 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531114/ERR3531114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531114/ERR3531114_2.fastq.gz 1273944 WGS 756648 RANDOM 86095255;86692705 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0f208842d98d125a554915f88f1cd241 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531114/ERR3531114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531114/ERR3531114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531114/756648.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531114/756648.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531114/ERR3531114_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531114/ERR3531114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531114/756648.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531114/756648.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 82875766;83447526 ERS3755773 ERX3548750 GENOMIC 253433652 2019-09-19 756648 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531114/756648.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531114/756648.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531114 756648 ERR3530978 753471 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530978 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530978 b2024aab8e916609a890f79c1ed13dc9;a447acae5e90deae334ee43ca5fb78d9 1313 114371071 3eb0bfb187084c27a9bfe11d96744393;97c0f6361f499356b60a3ddd42acf592 SAMEA5785720 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530978/ERR3530978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530978/ERR3530978_2.fastq.gz 1263920 WGS 753471 RANDOM 83838868;83937996 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 092b6b300fc5543193d21f370842c53b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530978/ERR3530978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530978/ERR3530978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530978/753471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530978/753471.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530978/ERR3530978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530978/ERR3530978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530978/753471.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530978/753471.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 80624159;80724031 ERS3755863 ERX3548840 GENOMIC 250723308 2019-09-19 753471 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530978/753471.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530978/753471.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530978 753471 ERR3530979 308608 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530979 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530979 d476936a9071c548d53fb497682b79b0;2ceb3e6bc00bceea7c588ebdee6c722b 1313 186806768 0cbdec5c1eefad38c629ad0ae14c8da4;77da7dad80e91aafd857fedf8a83498c SAMEA5786182 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530979/ERR3530979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530979/ERR3530979_2.fastq.gz 2064679 WGS 308608 RANDOM 135836234;137985544 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fdc415b8c61b3ad3404d7bbfd4c51bd6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530979/ERR3530979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530979/ERR3530979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530979/308608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530979/308608.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530979/ERR3530979_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530979/ERR3530979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530979/308608.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530979/308608.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130333984;132474267 ERS3756324 ERX3549301 GENOMIC 406914460 2019-09-19 308608 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530979/308608.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530979/308608.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530979 308608 ERR3530980 759546 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530980 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530980 a318c6686eb42609662714ffab6770bb;046b7c2871db1e942938c0fffc20353b 1313 137026790 05d60c7ac8f4d58dc5ffd175d6abd8f5;5eac8fd90bb9f09ac2c3d9b46191251b SAMEA5785461 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530980/ERR3530980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530980/ERR3530980_2.fastq.gz 1636396 WGS 759546 RANDOM 101328223;102831357 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b79b028d7451660262897e8529628761 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530980/ERR3530980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530980/ERR3530980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530980/759546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530980/759546.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530980/ERR3530980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530980/ERR3530980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530980/759546.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530980/759546.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 96939167;98435261 ERS3755604 ERX3548581 GENOMIC 321946315 2019-09-19 759546 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530980/759546.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530980/759546.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530980 759546 ERR3530981 756664 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530981 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530981 a61e653296b9b5266e68cc4c4f50a463;4c48f2415a139dcd5edd2eb2941a67b1 1313 122811923 017cae7e0c71a2bae8017c81e2affef2;12184dc499b8880be83944f3f3a1f033 SAMEA5785614 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530981/ERR3530981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530981/ERR3530981_2.fastq.gz 1326350 WGS 756664 RANDOM 89209405;90733505 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eff194f308a9906bc3776a35ccd1dcc0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530981/ERR3530981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530981/ERR3530981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530981/756664.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530981/756664.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530981/ERR3530981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530981/ERR3530981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530981/756664.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530981/756664.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85904188;87395324 ERS3755757 ERX3548734 GENOMIC 264455060 2019-09-19 756664 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530981/756664.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530981/756664.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530981 756664 ERR3530982 753493 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530982 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530982 2813c292f3973d0ad07cb18ed2a09196;05fa72b4ceb7ce66438d5863d1945337 1313 150006729 1010a7c4b3ce2e3d650fbaaa301d3d18;7bd2effda06b6daf4b1b25307024a8a8 SAMEA5785699 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530982/ERR3530982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530982/ERR3530982_2.fastq.gz 1664005 WGS 753493 RANDOM 110220507;110494875 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c2f4b14a17832e3349bd8a2aa2cba2e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530982/ERR3530982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530982/ERR3530982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530982/753493.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530982/753493.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530982/ERR3530982_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530982/ERR3530982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530982/753493.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530982/753493.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105833545;106105710 ERS3755842 ERX3548819 GENOMIC 331423064 2019-09-19 753493 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530982/753493.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530982/753493.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530982 753493 ERR3530332 759510 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530332 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530332 ae5edc52a98e9816ae036f66d0e43255;d48c91a723e3832641205ded2c960b63 1313 174950914 79b554b849e0fc44c0dcb1f7da22329b;cb03a84f8bf857c7ed2c90ba1f33c12d SAMEA5785497 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530332/ERR3530332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530332/ERR3530332_2.fastq.gz 2075319 WGS 759510 RANDOM 128544434;132090768 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 719f93fdf960a16c2bdc7516d0e01154 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530332/ERR3530332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530332/ERR3530332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530332/759510.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530332/759510.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530332/ERR3530332_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530332/ERR3530332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530332/759510.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530332/759510.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123047549;126577008 ERS3755640 ERX3548617 GENOMIC 413538058 2019-09-19 759510 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530332/759510.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530332/759510.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530332 759510 ERR3530984 758011 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530984 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530984 49d26eff0e3d011a5656fa5941897fa0;a285ff103259b8990e7c830145160b7c 1313 134550316 76b41f4d44b4d0ab1dfdf23b982a2e5b;92b4097796c697595b2d16fa7e510c35 SAMEA5785520 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530984/ERR3530984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530984/ERR3530984_2.fastq.gz 1603818 WGS 758011 RANDOM 97693884;102961621 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bb180085d5c86528e1cc11639d9f078a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530984/ERR3530984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530984/ERR3530984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530984/758011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530984/758011.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530984/ERR3530984_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530984/ERR3530984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530984/758011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530984/758011.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93472397;98724882 ERS3755663 ERX3548640 GENOMIC 319342261 2019-09-19 758011 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530984/758011.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530984/758011.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530984 758011 ERR3530985 717976 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530985 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530985 127e065e67b1f457853b471e992f1824;b323111dcf00ea6e65e3fb17b4c4a35f 1313 120033968 7a1e8271c87e13e39a889e3498a85182;5e77478252ce35c80ba0e2eba15a9230 SAMEA5785965 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530985/ERR3530985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530985/ERR3530985_2.fastq.gz 1415753 WGS 717976 RANDOM 88122031;90565885 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 09c357758ba86a2befb83404472a7ac1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530985/ERR3530985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530985/ERR3530985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530985/717976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530985/717976.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530985/ERR3530985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530985/ERR3530985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530985/717976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530985/717976.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 84455489;86879650 ERS3756107 ERX3549084 GENOMIC 281865980 2019-09-19 717976 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530985/717976.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530985/717976.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530985 717976 ERR3530374 717874 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530374 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530374 a4ab3dd55a88c5baf2a26565bf25a7f5;d48c8ed0be57a04e19b7944533b82015 1313 123440102 804758f4b37f629b6a2a012ca6ed08cf;7f4481acb611752ff2a37512c5196e8d SAMEA5786036 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530374/ERR3530374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530374/ERR3530374_2.fastq.gz 1426244 WGS 717874 RANDOM 89923104;93243821 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e918af5f40de15b9803eeb23b6118add ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530374/ERR3530374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530374/ERR3530374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530374/717874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530374/717874.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530374/ERR3530374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530374/ERR3530374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530374/717874.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530374/717874.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86233757;89555386 ERS3756178 ERX3549155 GENOMIC 283710079 2019-09-19 717874 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530374/717874.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530374/717874.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530374 717874 ERR3530989 300858 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530989 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530989 1242df97e80a70b4ce9b504bc4fe2432;8260aca6eafe34bd6fca991c14517ac5 1313 62318028 2dbdee2b2959915df71da81c97b3d617;17493f5258bd1c7ee8e002ab80fa5bd1 SAMEA5786282 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530989/ERR3530989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530989/ERR3530989_2.fastq.gz 733365 WGS 300858 RANDOM 45158835;46071907 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cdbb1839316c2d7752eb42b3057b10a9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530989/ERR3530989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530989/ERR3530989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530989/300858.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530989/300858.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530989/ERR3530989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530989/ERR3530989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530989/300858.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530989/300858.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 43428747;44316115 ERS3756424 ERX3549401 GENOMIC 144841865 2019-09-19 300858 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530989/300858.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530989/300858.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530989 300858 ERR3530990 760312 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530990 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530990 00f553589657a03ead6c40e3c7a5de97;73a2850ba7416a4f26d36d4000bd6228 1313 120919355 e94471e5d75bc30ba7710a78d9972aca;366210c67231b49213ceb3291f07db59 SAMEA5785452 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530990/ERR3530990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530990/ERR3530990_2.fastq.gz 1435527 WGS 760312 RANDOM 88961484;91584790 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 185cfba15487dd58e4d8d1888d8471b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530990/ERR3530990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530990/ERR3530990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530990/760312.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530990/760312.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530990/ERR3530990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530990/ERR3530990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530990/760312.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530990/760312.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 85247299;87850958 ERS3755595 ERX3548572 GENOMIC 286341118 2019-09-19 760312 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530990/760312.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530990/760312.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530990 760312 ERR3530988 757969 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530988 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530988 e4f1ba77a31b4f082270076658854065;4d9932feef5a6a9d3f134a82ada0e212 1313 146774993 d902a13e9ac92a5f3c9f24cca38b5d94;28cf8f33085cfe369523deed1bbc1cb0 SAMEA5785561 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530988/ERR3530988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530988/ERR3530988_2.fastq.gz 1788729 WGS 757969 RANDOM 109007319;111265278 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 662c1f16690ceac00c6da8033addbbb9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530988/ERR3530988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530988/ERR3530988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530988/757969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530988/757969.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530988/ERR3530988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530988/ERR3530988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530988/757969.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530988/757969.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 104211792;106453343 ERS3755704 ERX3548681 GENOMIC 355456801 2019-09-19 757969 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530988/757969.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530988/757969.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530988 757969 ERR3530987 651039 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530987 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530987 a04430b06e0c7df6537d03d24f6acbb7;8f87a3f5d9724aac02f36b53b1f4061a 1313 172100253 b970d92bb4c882c569302b4e0f7a2a52;57bffe5a67240c49e1e1142c59fa54c4 SAMEA5786109 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530987/ERR3530987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530987/ERR3530987_2.fastq.gz 1852288 WGS 651039 RANDOM 121942987;129474506 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ef655ef4988d0f8ba629c2dc13c197ef ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530987/ERR3530987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530987/ERR3530987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530987/651039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530987/651039.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530987/ERR3530987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530987/ERR3530987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530987/651039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530987/651039.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117080190;124543092 ERS3756251 ERX3549228 GENOMIC 369182562 2019-09-19 651039 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530987/651039.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530987/651039.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530987 651039 ERR3530991 657301 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530991 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530991 130cd6e20c4f3a6bcc94a46814e14fce;c363ad7c775dc710adaa92b7bc5bbfe7 1313 127741198 7836c5ad9e345fb01e2e0d50af6bf23c;e490732598395bd0c3fdd1c70ccb4693 SAMEA5786091 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530991/ERR3530991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530991/ERR3530991_2.fastq.gz 1590038 WGS 657301 RANDOM 93691026;98552429 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e11e422ce91a02d595ce60430ea02064 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530991/ERR3530991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530991/ERR3530991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530991/657301.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530991/657301.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530991/ERR3530991_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530991/ERR3530991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530991/657301.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530991/657301.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 89516694;94339681 ERS3756233 ERX3549210 GENOMIC 316609528 2019-09-19 657301 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530991/657301.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530991/657301.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530991 657301 ERR3530992 720954 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530992 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530992 c0a30f29c22a9ac3bcfab4ddd61225c3;bb73d7c67113740c5895171536c7e654 1313 191367038 0dc3de7955889af88b624d8073f87e99;076e11a5c6db24c977c03c843beea8b1 SAMEA5785854 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530992/ERR3530992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530992/ERR3530992_2.fastq.gz 1979608 WGS 720954 RANDOM 136434618;139749138 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f9f0ab3e161ada7ad165b87de6899cb9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530992/ERR3530992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530992/ERR3530992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530992/720954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530992/720954.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530992/ERR3530992_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530992/ERR3530992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530992/720954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530992/720954.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 131204421;134461347 ERS3755997 ERX3548974 GENOMIC 392325933 2019-09-19 720954 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530992/720954.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530992/720954.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530992 720954 ERR3530994 717939 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530994 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530994 963fa2a2a998e0a1181dc227987cf5d6;4267ce3ddca0894aac896bb43de59f8d 1313 161278123 d90fcebeb52e457aa7193e5198adbc38;f3bd790ae6f0d7b19d1aff15591bb46b SAMEA5786001 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530994/ERR3530994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530994/ERR3530994_2.fastq.gz 1897513 WGS 717939 RANDOM 118170915;120910535 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b2863ccddd9956b3c8c52c88bdd44bcd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530994/ERR3530994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530994/ERR3530994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530994/717939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530994/717939.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530994/ERR3530994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530994/ERR3530994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530994/717939.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530994/717939.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113104129;115840781 ERS3756143 ERX3549120 GENOMIC 370091487 2019-09-19 717939 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530994/717939.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530994/717939.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530994 717939 ERR3530995 660126 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530995 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530995 1aa31bad33e69969edf0b80335084dc5;b8aee66e3f60cc4be576fd3e9a9b40b8 1313 185859895 bbb1da96a346b7970e8b5b13b0205fd5;e0a868cff95b5b7769a4475e54f9a1a0 SAMEA5786080 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530995/ERR3530995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530995/ERR3530995_2.fastq.gz 2194543 WGS 660126 RANDOM 135869246;140761384 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 574948fcdd1849e03d2826e750eb52e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530995/ERR3530995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530995/ERR3530995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530995/660126.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530995/660126.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530995/ERR3530995_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530995/ERR3530995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530995/660126.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530995/660126.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 130068591;134951304 ERS3756222 ERX3549199 GENOMIC 438173607 2019-09-19 660126 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530995/660126.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530995/660126.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530995 660126 ERR3530993 318629 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530993 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530993 cf1be4a3cd497d16e37d0a82a55d395f;cebf871e5a89cd9b5ef269e8fcfc3fba 1313 198796937 3a242132892e86cde50ce5f329d1473b;b2578cb1a970ce5a62c931803b8ca9bd SAMEA5786130 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530993/ERR3530993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530993/ERR3530993_2.fastq.gz 2110588 WGS 318629 RANDOM 141884349;144523992 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cf37380373e51159ffa486b3640c3183 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530993/ERR3530993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530993/ERR3530993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530993/318629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530993/318629.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530993/ERR3530993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530993/ERR3530993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530993/318629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530993/318629.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136324282;138955144 ERS3756272 ERX3549249 GENOMIC 406574226 2019-09-19 318629 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530993/318629.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530993/318629.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530993 318629 ERR3530398 759507 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530398 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530398 b0c847798a147f5d5ba2101b610488de;6eb7c87f9a7673c24f907b816f9bc03c 1313 194158398 31be8084c0d8429197bc8c3415f3baf7;0322611aa3dabad03e66ecd2f2712370 SAMEA5785500 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530398/ERR3530398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530398/ERR3530398_2.fastq.gz 2326087 WGS 759507 RANDOM 143131628;146162790 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 67c326774e58835709580441dd5c3bf3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530398/ERR3530398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530398/ERR3530398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530398/759507.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530398/759507.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530398/ERR3530398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530398/ERR3530398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530398/759507.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530398/759507.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137112313;140121691 ERS3755643 ERX3548620 GENOMIC 462138080 2019-09-19 759507 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530398/759507.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530398/759507.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530398 759507 ERR3530997 759528 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530997 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530997 9e9c1005ae954b336d74d0438ae9ef86;2d79c25bae6478d1c645e2915c5f36bd 1313 193010701 49a8028496a6aba5f96faa3566c93a9b;ab15789643d4712947625243f2b0b555 SAMEA5785479 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530997/ERR3530997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530997/ERR3530997_2.fastq.gz 2294924 WGS 759528 RANDOM 142185459;145378567 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a536b5c6f5086d44c02059ffd0f83435 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530997/ERR3530997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530997/ERR3530997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530997/759528.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530997/759528.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530997/ERR3530997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530997/ERR3530997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530997/759528.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530997/759528.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136246288;139420972 ERS3755622 ERX3548599 GENOMIC 457578255 2019-09-19 759528 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530997/759528.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530997/759528.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530997 759528 ERR3530999 757966 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530999 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530999 6299dff490f269f7447d4ce5fde699d8;e22c3e4a407259d2306b00a1e8af7bf5 1313 81128427 ec157036659dee727771d91d8f7aaa78;a02a07ba6416d5ac4df221601b928e12 SAMEA5785564 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530999/ERR3530999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530999/ERR3530999_2.fastq.gz 977544 WGS 757966 RANDOM 59939945;61755955 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 39ca5e45b6e5ac0a526996a70fb43e6b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530999/ERR3530999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530999/ERR3530999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530999/757966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530999/757966.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530999/ERR3530999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530999/ERR3530999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530999/757966.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530999/757966.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57456019;59266900 ERS3755707 ERX3548684 GENOMIC 194890553 2019-09-19 757966 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530999/757966.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530999/757966.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530999 757966 ERR3530415 717848 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530415 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530415 7f239b796da58bb55652e655ef34d423;6badb86a6e7574dc57c2149f62fc82a3 1313 101321431 aab3bfdf6fd63631af9284a7f6c2721f;1c2cab8b87e1452831b4a0e49a9b00b8 SAMEA5786045 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530415/ERR3530415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530415/ERR3530415_2.fastq.gz 1179811 WGS 717848 RANDOM 73431893;77157791 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 20ccbda90ce11897b7ec69b32b0b36b4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530415/ERR3530415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530415/ERR3530415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530415/717848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530415/717848.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530415/ERR3530415_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530415/ERR3530415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530415/717848.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530415/717848.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70482269;74201036 ERS3756187 ERX3549164 GENOMIC 235135374 2019-09-19 717848 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530415/717848.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530415/717848.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530415 717848 ERR3531000 720994 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531000 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531000 641915b48a1ca3fa51c36cc9e2a9bf45;ec3fc4ecee01693760faa0e0d41a2c60 1313 108538527 9a13af26e8120970df14647f6fefb361;909ed8e304ff30d884d00a4927709634 SAMEA5785815 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531000/ERR3531000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531000/ERR3531000_2.fastq.gz 1133321 WGS 720994 RANDOM 78358201;78906227 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b6939751ef19b7f7e30a8fc79016a6f2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531000/ERR3531000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531000/ERR3531000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531000/720994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531000/720994.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531000/ERR3531000_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531000/ERR3531000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531000/720994.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531000/720994.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75488254;76022552 ERS3755958 ERX3548935 GENOMIC 223360502 2019-09-19 720994 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531000/720994.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531000/720994.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531000 720994 ERR3530428 720976 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530428 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530428 9593d3a14229241adc9d0d026a586568;3d937ab618c47ca1157835fdb88ebca2 1313 237477899 224a5083dc2da7b7c8cbcc4ce0ad6f42;cf26b9ef00273bf45fc38f24745a9580 SAMEA5785832 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530428/ERR3530428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530428/ERR3530428_2.fastq.gz 2441499 WGS 720976 RANDOM 169378371;172431916 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7461ccec408771dfbfe92854efd0ae69 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530428/ERR3530428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530428/ERR3530428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530428/720976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530428/720976.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530428/ERR3530428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530428/ERR3530428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530428/720976.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530428/720976.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 163115337;166114632 ERS3755975 ERX3548952 GENOMIC 482889113 2019-09-19 720976 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530428/720976.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530428/720976.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530428 720976 ERR3530502 759548 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530502 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530502 be56158d2827b230442568fb77a284cc;29ffad47c0cc99dd4acb35954c544515 1313 232055739 871888f4a9dd58dfdb2f31491065d625;fcd449d0b00ce499156ad8f47f476ef3 SAMEA5785459 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530502/ERR3530502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530502/ERR3530502_2.fastq.gz 2747406 WGS 759548 RANDOM 168455296;175785289 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f77a477fbaa8022bc08fa8017f0c9589 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530502/ERR3530502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530502/ERR3530502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530502/759548.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530502/759548.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530502/ERR3530502_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530502/ERR3530502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530502/759548.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530502/759548.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 161289566;168599776 ERS3755602 ERX3548579 GENOMIC 544867174 2019-09-19 759548 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530502/759548.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530502/759548.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530502 759548 ERR3530586 720202 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530586 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530586 dba0a575a30043f5fc8730d7db284b50;f8c4a23380eb4c16012bca963a3f9a1e 1313 205575047 c7dc67d668b04c1d327a9b152948412c;b7155d2218777c089e84f68a846a008c SAMEA5785933 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530586/ERR3530586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530586/ERR3530586_2.fastq.gz 2274537 WGS 720202 RANDOM 147961369;152672217 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 18a76b6b27bee560429393145d5def54 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530586/ERR3530586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530586/ERR3530586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530586/720202.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530586/720202.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530586/ERR3530586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530586/ERR3530586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530586/720202.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530586/720202.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 142032051;146718081 ERS3756075 ERX3549052 GENOMIC 452138018 2019-09-19 720202 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530586/720202.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530586/720202.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530586 720202 ERR3531004 717946 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531004 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531004 122fed6df775bb8a814a4078f72bdbc0;4ae280f064ed1f5a99d82843a94e8a68 1313 132364497 ed7f4518bc8e5f4e2c4d0078599659e8;94fb9c7d4e96a59713183e3d1037edeb SAMEA5785994 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531004/ERR3531004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531004/ERR3531004_2.fastq.gz 1571426 WGS 717946 RANDOM 97509308;100136314 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0bea94cc5851953ef4b60b4dac57680d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531004/ERR3531004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531004/ERR3531004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531004/717946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531004/717946.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531004/ERR3531004_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531004/ERR3531004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531004/717946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531004/717946.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93351634;95969717 ERS3756136 ERX3549113 GENOMIC 313126494 2019-09-19 717946 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531004/717946.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531004/717946.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531004 717946 ERR3530676 717954 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530676 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530676 6d19b634921200f3ceae2d7764bb7490;017da5765d56e8dcdbf36a8301c27431 1313 193063603 760dbeece3d1739f1ce94ef019c177fe;97ab1808ad30bd2f59af45d160b2770f SAMEA5785986 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530676/ERR3530676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530676/ERR3530676_2.fastq.gz 2326005 WGS 717954 RANDOM 143505972;144957337 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1b4dd93fac98cb53186bf2be65aa296d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530676/ERR3530676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530676/ERR3530676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530676/717954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530676/717954.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530676/ERR3530676_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530676/ERR3530676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530676/717954.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530676/717954.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 137394766;138831542 ERS3756128 ERX3549105 GENOMIC 463675525 2019-09-19 717954 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530676/717954.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530676/717954.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530676 717954 ERR3531007 308631 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531007 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531007 aea395f81a207f1d2285d4473d20129d;2dbf2550360894e158cac9eeaf6318a1 1313 266964187 06c44f1871c2219c2537ad61094c7845;c9b6d6afcbd24834e7de254137e562e0 SAMEA5786163 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531007/ERR3531007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531007/ERR3531007_2.fastq.gz 2928768 WGS 308631 RANDOM 193377439;196971575 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 365e37c05649895998c56f80ad864306 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531007/ERR3531007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531007/ERR3531007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531007/308631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531007/308631.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531007/ERR3531007_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531007/ERR3531007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531007/308631.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531007/308631.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 185701753;189273673 ERS3756305 ERX3549282 GENOMIC 580946426 2019-09-19 308631 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531007/308631.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531007/308631.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531007 308631 ERR3531006 720187 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531006 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531006 b7c495a542d1418f126124481e5625bc;7ebcbc187cb5e0078034a4acee67552b 1313 96375341 1bb80e20577690fa97ef6e18132760c7;f5971975ed762724bd291dcfec0f3ce8 SAMEA5785948 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531006/ERR3531006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531006/ERR3531006_2.fastq.gz 1070234 WGS 720187 RANDOM 69717050;71757008 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e93669764224ae92bc8fccf700b7d971 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531006/ERR3531006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531006/ERR3531006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531006/720187.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531006/720187.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531006/ERR3531006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531006/ERR3531006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531006/720187.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531006/720187.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66963929;68997850 ERS3756090 ERX3549067 GENOMIC 212043273 2019-09-19 720187 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531006/720187.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531006/720187.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531006 720187 ERR3531008 753483 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531008 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531008 4fc9f414fd8211c5c3856616b21884b6;017867dc92f9cf3f5c88a308557da14e 1313 109542795 0cd6ebe5e7a70c934404e213346efcc1;7ea82e0f7e286384fa454bfeb1fe502e SAMEA5785709 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531008/ERR3531008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531008/ERR3531008_2.fastq.gz 1197213 WGS 753483 RANDOM 79176830;81334216 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f26b3daac86b16d0d9717c5022119358 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531008/ERR3531008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531008/ERR3531008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531008/753483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531008/753483.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531008/ERR3531008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531008/ERR3531008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531008/753483.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531008/753483.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 76161646;78316438 ERS3755852 ERX3548829 GENOMIC 238139645 2019-09-19 753483 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531008/753483.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531008/753483.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531008 753483 ERR3531009 720222 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531009 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531009 b335faf6c284edbedebe6489c2d98557;136f1c16bc3f91c0437df965803076cf 1313 88643534 ba85cafc532963d1aeb13cd7ae065ff9;00d6643cb50af0db884797cac750474f SAMEA5785912 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531009/ERR3531009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531009/ERR3531009_2.fastq.gz 973148 WGS 720222 RANDOM 62793157;66599913 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 142d94123dd58404b9c0ebc3a4dc83c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531009/ERR3531009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531009/ERR3531009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531009/720222.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531009/720222.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531009/ERR3531009_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531009/ERR3531009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531009/720222.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531009/720222.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60301337;64083353 ERS3756055 ERX3549032 GENOMIC 191566512 2019-09-19 720222 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531009/720222.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531009/720222.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531009 720222 ERR3531010 304261 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531010 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531010 b0bd405c06c793029a8efb8abf7b6a4d;d78e87b97a9ddacde473089c185fde34 1313 144683881 084f7d152030d8fc1878e199024200ef;e873b9cdbe45994cb156a76131b9b2f2 SAMEA5786262 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531010/ERR3531010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531010/ERR3531010_2.fastq.gz 1672044 WGS 304261 RANDOM 106150330;108263458 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 922a9ac571ff6248330d8fc5bbbbea7a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531010/ERR3531010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531010/ERR3531010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531010/304261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531010/304261.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531010/ERR3531010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531010/ERR3531010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531010/304261.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531010/304261.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 101752946;103862638 ERS3756404 ERX3549381 GENOMIC 332010364 2019-09-19 304261 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531010/304261.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531010/304261.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531010 304261 ERR3531011 717840 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531011 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531011 5c6a7a0f8d34850c251b8b0e79f4ecd0;121bed6e38bff4a5cb10c04d42b8d10f 1313 112243570 908d52a23004e5470fc2b9d3b552a268;5b3274641c53b0e603e60272fae94458 SAMEA5786049 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531011/ERR3531011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531011/ERR3531011_2.fastq.gz 1327928 WGS 717840 RANDOM 82472054;84857694 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ac3703448fe8a469e13ab581e152e3be ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531011/ERR3531011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531011/ERR3531011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531011/717840.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531011/717840.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531011/ERR3531011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531011/ERR3531011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531011/717840.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531011/717840.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79096900;81471537 ERS3756191 ERX3549168 GENOMIC 264967318 2019-09-19 717840 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531011/717840.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531011/717840.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531011 717840 ERR3531012 753415 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531012 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531012 398e8418384267fcb31a756211706500;374c50c15d6c5a8ee69053443373f10c 1313 134528573 7298bd47b33e0f30406195d09510f03b;80e086685d85d3d38767eb1bf9a39302 SAMEA5785775 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531012/ERR3531012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531012/ERR3531012_2.fastq.gz 1463383 WGS 753415 RANDOM 95865789;100371281 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2d12984e634953be6d8a7f488e5c57d7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531012/ERR3531012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531012/ERR3531012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531012/753415.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531012/753415.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531012/ERR3531012_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531012/ERR3531012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531012/753415.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531012/753415.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 92075134;96553916 ERS3755918 ERX3548895 GENOMIC 291054240 2019-09-19 753415 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531012/753415.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531012/753415.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531012 753415 ERR3531013 720949 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531013 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531013 08522bf8c1a34f59dd3a6b0f3d23c0c8;0989e759cd95460f40b56b0aa1a0b2fe 1313 136650623 d57d1afb373f2e07fa9ef3d272c3f09c;3198245af185e029f9da3e4e543423fb SAMEA5785859 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531013/ERR3531013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531013/ERR3531013_2.fastq.gz 1410947 WGS 720949 RANDOM 97370987;99761731 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. af4a79d9a97363c0f9a30695ac9f03ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531013/ERR3531013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531013/ERR3531013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531013/720949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531013/720949.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531013/ERR3531013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531013/ERR3531013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531013/720949.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531013/720949.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93752223;96093219 ERS3756002 ERX3548979 GENOMIC 279109217 2019-09-19 720949 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531013/720949.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531013/720949.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531013 720949 ERR3531015 720985 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531015 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531015 2cd6f25e9e01f554eb3ca0e6618bc3a2;5c2272f45f9f7d5f8a51fbcb9c2d07e0 1313 347403368 f12216f682fbbcc74a3f87a1c63b88a2;de3a288d421f1d56bae7bccce53533ad SAMEA5785823 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531015/ERR3531015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531015/ERR3531015_2.fastq.gz 3590425 WGS 720985 RANDOM 248876266;252952303 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d7c66c2218de32f9cee5f467ad66572b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531015/ERR3531015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531015/ERR3531015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531015/720985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531015/720985.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531015/ERR3531015_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531015/ERR3531015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531015/720985.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531015/720985.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 238659821;242683991 ERS3755966 ERX3548943 GENOMIC 711680618 2019-09-19 720985 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531015/720985.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531015/720985.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531015 720985 ERR3530694 717974 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530694 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530694 123502e7ea0645b6ad750fdd4900ed88;375f8d816f74321e1706b4562dc4e5be 1313 81094126 7e9125a13aeef1b1819ac701acd55065;318dc13a41faebd595c3fd4cececea1d SAMEA5785967 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530694/ERR3530694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530694/ERR3530694_2.fastq.gz 964003 WGS 717974 RANDOM 60289785;61041487 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bf888f9c955ab08e34af7fd1b89212da ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530694/ERR3530694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530694/ERR3530694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530694/717974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530694/717974.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530694/ERR3530694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530694/ERR3530694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530694/717974.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530694/717974.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 57833267;58574893 ERS3756109 ERX3549086 GENOMIC 192422738 2019-09-19 717974 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530694/717974.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530694/717974.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530694 717974 ERR3531016 304283 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531016 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531016 22029ca7ac6e5d548c2357d03a40f39b;9ebe73ebce5ed1197ba0bd29c78d2c27 1313 142810856 66e1b899cdd976bf6f0ac937d02c1d68;cc71e77ad7da4d67aa80a812cb320086 SAMEA5786243 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531016/ERR3531016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531016/ERR3531016_2.fastq.gz 1633378 WGS 304283 RANDOM 104102431;106856308 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d7f5da484e80c2c62ed3ab163ddf7a50 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531016/ERR3531016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531016/ERR3531016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531016/304283.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531016/304283.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531016/ERR3531016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531016/ERR3531016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531016/304283.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531016/304283.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99825533;102576198 ERS3756385 ERX3549362 GENOMIC 324077081 2019-09-19 304283 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531016/304283.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531016/304283.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531016 304283 ERR3530744 759543 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530744 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530744 c3ad46c5ed9287a2869473c2f806f689;9eaa02cda3d441de4063cdc468b5c6ce 1313 184128661 43b4ce6ef2d22d395b41aaddc3e2beaf;6f3224de1645607c0bda1355022c0c27 SAMEA5785464 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530744/ERR3530744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530744/ERR3530744_2.fastq.gz 2174184 WGS 759543 RANDOM 135014566;138873678 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d011c53821ac1b51872aeb9f348b60a7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530744/ERR3530744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530744/ERR3530744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530744/759543.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530744/759543.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530744/ERR3530744_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530744/ERR3530744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530744/759543.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530744/759543.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129292544;133131931 ERS3755607 ERX3548584 GENOMIC 433637672 2019-09-19 759543 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530744/759543.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530744/759543.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530744 759543 ERR3531018 720995 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531018 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531018 71c1e73de3eb65c5fdb56af40aa49193;3689ff71371dbcfa4857adcb75c0b6db 1313 219431993 2785329e4cdfd2422967b8a7fde4996c;120571d074f9862f8c3bd206af2abc86 SAMEA5785814 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531018/ERR3531018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531018/ERR3531018_2.fastq.gz 2306619 WGS 720995 RANDOM 158507557;159367028 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 62a757a2d61c7b7bd680f297dff4fd7f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531018/ERR3531018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531018/ERR3531018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531018/720995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531018/720995.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531018/ERR3531018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531018/ERR3531018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531018/720995.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531018/720995.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 152535445;153381048 ERS3755957 ERX3548934 GENOMIC 456999196 2019-09-19 720995 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531018/720995.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531018/720995.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531018 720995 ERR3531020 308586 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531020 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531020 17fd427c6d8b0ee1c75095109fdcefab;bbee541d86178e76e02475bccdac8b0e 1313 306946222 e73db77b05cb9687f5a26333c075f6c1;caa3945416b7fbf59dbaedb9faa44693 SAMEA5786202 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531020/ERR3531020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531020/ERR3531020_2.fastq.gz 3443352 WGS 308586 RANDOM 224403274;227307856 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3f9470b126efe941e84cfe0ea8c1c130 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531020/ERR3531020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531020/ERR3531020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531020/308586.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531020/308586.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531020/ERR3531020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531020/ERR3531020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531020/308586.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531020/308586.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 214785428;217706507 ERS3756344 ERX3549321 GENOMIC 680427083 2019-09-19 308586 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531020/308586.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531020/308586.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531020 308586 ERR3531019 300860 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531019 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531019 2abbf4ef852fb44ed4f889286fe6a1ea;3181e59ceb09f22544d10ad574acd1c2 1313 137673819 6d2e310f96107fd59b14438e69ad7ee3;bfb61b09ebfb6012a878517446c7ae1f SAMEA5786280 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531019/ERR3531019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531019/ERR3531019_2.fastq.gz 1629614 WGS 300860 RANDOM 100070388;101430220 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 673094227738c81b0c17c0808f22bd8b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531019/ERR3531019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531019/ERR3531019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531019/300860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531019/300860.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531019/ERR3531019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531019/ERR3531019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531019/300860.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531019/300860.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 95979184;97311703 ERS3756422 ERX3549399 GENOMIC 322554082 2019-09-19 300860 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531019/300860.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531019/300860.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531019 300860 ERR3531021 717952 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531021 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531021 70bc4803cfc0999e22eb32da893a6d1e;5b08349ec4c211299bc83d15b3d7fa21 1313 163649309 481d13e5d20814f45fb47c12fdf74731;6f2b600d8c1404bc92dec48cd5dc63cf SAMEA5785988 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531021/ERR3531021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531021/ERR3531021_2.fastq.gz 1966743 WGS 717952 RANDOM 121473850;123404762 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 99b8a7b184dc66011005fcbcc5361dec ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531021/ERR3531021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531021/ERR3531021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531021/717952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531021/717952.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531021/ERR3531021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531021/ERR3531021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531021/717952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531021/717952.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 116204208;118123376 ERS3756130 ERX3549107 GENOMIC 391922050 2019-09-19 717952 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531021/717952.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531021/717952.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531021 717952 ERR3531022 753445 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531022 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531022 3f8d3fa536a53ff65a7fd4e16a3c3fa6;50db3114ed6ffd9b3bbfa8bffe1e539a 1313 121163890 4d433ff5cd3e5eebd45f342717de16fd;894f84f4e3c64ee9269d23044736a625 SAMEA5785745 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531022/ERR3531022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531022/ERR3531022_2.fastq.gz 1357755 WGS 753445 RANDOM 90048954;88716619 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4124db2f972b4ec720272b38d660944e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531022/ERR3531022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531022/ERR3531022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531022/753445.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531022/753445.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531022/ERR3531022_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531022/ERR3531022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531022/753445.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531022/753445.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 86590754;85268019 ERS3755888 ERX3548865 GENOMIC 270316517 2019-09-19 753445 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531022/753445.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531022/753445.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531022 753445 ERR3531023 717932 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531023 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531023 0daf3130ec1feaecfd00ecbdc8d7aa48;ae90f5871e2d02222f0466fdf6812b66 1313 128668248 c0b52cdf66334dacedd64dac1c9553a6;eead447e11582d969c7a71fe75d99261 SAMEA5786007 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531023/ERR3531023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531023/ERR3531023_2.fastq.gz 1521442 WGS 717932 RANDOM 94483229;97457112 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 45f0b4968b4026e25db4dc4917551f7e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531023/ERR3531023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531023/ERR3531023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531023/717932.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531023/717932.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531023/ERR3531023_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531023/ERR3531023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531023/717932.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531023/717932.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90516014;93473181 ERS3756149 ERX3549126 GENOMIC 303138940 2019-09-19 717932 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531023/717932.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531023/717932.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531023 717932 ERR3531024 308620 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531024 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531024 2e2ee59fc3d22a0e12d3b19037dde92b;3bf815d2b72d907911cc79190f0d9b4c 1313 224125313 c19ff3ab47b1b9f72fa7d62f79100141;19d75983f2ead08fe721d16ac4c12978 SAMEA5786174 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531024/ERR3531024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531024/ERR3531024_2.fastq.gz 2506157 WGS 308620 RANDOM 163290467;165099928 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3c6e098c50c279b7c24a6cbd56241a1c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531024/ERR3531024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531024/ERR3531024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531024/308620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531024/308620.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531024/ERR3531024_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531024/ERR3531024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531024/308620.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531024/308620.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 156854318;158672479 ERS3756316 ERX3549293 GENOMIC 492079039 2019-09-19 308620 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531024/308620.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531024/308620.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531024 308620 ERR3531025 717951 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531025 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531025 72057b767fac70a58ec4b3ec87fb30c9;7df7894ae28d1607c597dd66b968c3e3 1313 158609909 0f1191ccd3907ab77ffe47036f275e24;848dd7587ed4f29b3c4185ca15d4626a SAMEA5785989 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531025/ERR3531025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531025/ERR3531025_2.fastq.gz 1902262 WGS 717951 RANDOM 117464873;118586992 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3c0cf13cdc7ac2cb1da54f5e95e8cabd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531025/ERR3531025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531025/ERR3531025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531025/717951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531025/717951.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531025/ERR3531025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531025/ERR3531025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531025/717951.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531025/717951.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 112329867;113452273 ERS3756131 ERX3549108 GENOMIC 369243881 2019-09-19 717951 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531025/717951.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531025/717951.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531025 717951 ERR3531026 753462 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531026 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531026 bfc5e8ff55dfea69e75a8e4dbc95353c;731bcb22b503e58a99790cd8ee365658 1313 83763411 622e6d55606d3241ef636f15e368b97f;ec055db7abd3d8d26d687992e4cff7ba SAMEA5785728 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531026/ERR3531026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531026/ERR3531026_2.fastq.gz 922823 WGS 753462 RANDOM 60951041;62010604 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 35a7f45ff128342bef38d4620150cff1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531026/ERR3531026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531026/ERR3531026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531026/753462.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531026/753462.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531026/ERR3531026_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531026/ERR3531026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531026/753462.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531026/753462.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 58627197;59688284 ERS3755871 ERX3548848 GENOMIC 182847569 2019-09-19 753462 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531026/753462.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531026/753462.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531026 753462 ERR3531027 720212 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531027 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531027 1be937d7824531375fa601732dab74ed;201184ccd64ceacabc72b34b19f59c4a 1313 248025750 b214482ea9e02c89f36bcfd18277518d;15247a52f6ff30b5be53770d44fc6472 SAMEA5785923 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531027/ERR3531027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531027/ERR3531027_2.fastq.gz 2771625 WGS 720212 RANDOM 178543918;183421354 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0134b7aaa540fa87ac64b797f36acad2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531027/ERR3531027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531027/ERR3531027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531027/720212.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531027/720212.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531027/ERR3531027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531027/ERR3531027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531027/720212.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531027/720212.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 171207555;176082799 ERS3756065 ERX3549042 GENOMIC 541253554 2019-09-19 720212 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531027/720212.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531027/720212.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531027 720212 ERR3531028 759514 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531028 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531028 a190854e91ab31e009e011d2603d15c7;31f72b85bc713d307ebab0ee74ddeb16 1313 210357775 483ab49adef47f884488971f2664ceb4;b65ecddd54fe52cd18f3ee21fb3bd0e6 SAMEA5785493 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531028/ERR3531028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531028/ERR3531028_2.fastq.gz 2484596 WGS 759514 RANDOM 154807896;157579044 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 201a5604d43101478e643a4114441ad6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531028/ERR3531028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531028/ERR3531028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531028/759514.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531028/759514.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531028/ERR3531028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531028/ERR3531028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531028/759514.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531028/759514.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 148355434;151100199 ERS3755636 ERX3548613 GENOMIC 494026797 2019-09-19 759514 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531028/759514.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531028/759514.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531028 759514 ERR3530794 720235 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3530794 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530794 2e0b95afc76b5512042705a5b51e8abd;21eaf64af650d44e79d17f1ba257d394 1313 146028905 a1b782a774941c141e6ec48758415ac2;81b803893ce1cd5d2830f608ad764e71 SAMEA5785899 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530794/ERR3530794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530794/ERR3530794_2.fastq.gz 1593647 WGS 720235 RANDOM 104034984;108802497 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6663388b09100441617d786b78690c66 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530794/ERR3530794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3530794/ERR3530794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530794/720235.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530794/720235.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530794/ERR3530794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3530794/ERR3530794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530794/720235.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530794/720235.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99809779;104528339 ERS3756042 ERX3549019 GENOMIC 315030788 2019-09-19 720235 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530794/720235.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530794/720235.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3530794 720235 ERR3531030 720182 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531030 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531030 543776826b25fa1393c832a8a34091a8;44604f122c65ab91c28679363bcbeddc 1313 280905526 c3e36641c7382f67c832bc7d4cf1c0c2;046782fb618ca7ff1e90e031b5c75346 SAMEA5785952 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531030/ERR3531030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531030/ERR3531030_2.fastq.gz 3088950 WGS 720182 RANDOM 200444054;209690522 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 914a54d8f8c5abc311f5127622459d63 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531030/ERR3531030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531030/ERR3531030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531030/720182.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531030/720182.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531030/ERR3531030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531030/ERR3531030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531030/720182.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531030/720182.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 192029517;201216351 ERS3756094 ERX3549071 GENOMIC 614577659 2019-09-19 720182 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531030/720182.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531030/720182.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531030 720182 ERR3531031 720271 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531031 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531031 7ba3930df4dd2eeecec6b0e924b19dbf;d9e164eb924f505b9372325ee1ed4b0b 1313 180501092 34bea9716bf7e7adfe8508afec1eb6a9;14e13b51cd87e47f95b3e7dc32d6ac42 SAMEA5785871 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531031/ERR3531031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531031/ERR3531031_2.fastq.gz 1993819 WGS 720271 RANDOM 129368350;134302788 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1ddac773c09cd72ba49a45f2eb8aad61 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531031/ERR3531031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531031/ERR3531031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531031/720271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531031/720271.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531031/ERR3531031_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531031/ERR3531031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531031/720271.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531031/720271.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124067398;128977562 ERS3756014 ERX3548991 GENOMIC 392789494 2019-09-19 720271 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531031/720271.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531031/720271.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531031 720271 ERR3531032 720952 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531032 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531032 c219c4cb95d3aebaed52b420fda98dd1;4fcc59e58b72d73fe22a372ffc601d50 1313 167390824 029efc1e79b9e2133e6f78c8816629cf;0b7de5babefc4699cf51b79db3b79773 SAMEA5785856 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531032/ERR3531032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531032/ERR3531032_2.fastq.gz 1736172 WGS 720952 RANDOM 120068680;121858192 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 524e99d37600004fa0dead3ba32edb72 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531032/ERR3531032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531032/ERR3531032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531032/720952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531032/720952.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531032/ERR3531032_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531032/ERR3531032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531032/720952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531032/720952.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 115488905;117246743 ERS3755999 ERX3548976 GENOMIC 342575812 2019-09-19 720952 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531032/720952.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531032/720952.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531032 720952 ERR3531034 300857 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531034 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531034 cc52ee55fa9fb8fbd8f4e682cb43e10d;a3cc44e3082b8a23b15564ed9e4275e6 1313 95070513 bedda5265ba21aa6802aff63d557f4cf;9412cf3a0cf0de081e2749c7594f6393 SAMEA5786283 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531034/ERR3531034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531034/ERR3531034_2.fastq.gz 1130506 WGS 300857 RANDOM 69207193;69832216 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8925b45d3274fd0e8e9a3fdf5df55bfa ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531034/ERR3531034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531034/ERR3531034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531034/300857.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531034/300857.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531034/ERR3531034_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531034/ERR3531034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531034/300857.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531034/300857.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66456120;67064497 ERS3756425 ERX3549402 GENOMIC 221273642 2019-09-19 300857 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531034/300857.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531034/300857.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531034 300857 ERR3530807 757983 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530807 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530807 8284b8abb7c52fb6e01b5a813fc3340e;72c890073dc79a34bdfb6ae8773f0e61 1313 60501486 60dbaf31220f791b8bc66d05253e806a;aeeef2910e9d40c57be0fc299c18e6d6 SAMEA5785547 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530807/ERR3530807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530807/ERR3530807_2.fastq.gz 729809 WGS 757983 RANDOM 44674048;45883623 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 24d0cba0c55d9dce79fd43b51e4498be ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530807/ERR3530807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530807/ERR3530807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530807/757983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530807/757983.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530807/ERR3530807_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530807/ERR3530807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530807/757983.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530807/757983.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 42814684;44020349 ERS3755690 ERX3548667 GENOMIC 143757533 2019-09-19 757983 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530807/757983.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530807/757983.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530807 757983 ERR3531035 717828 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531035 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531035 1081851426c0c09b25cd14fc4bbc34d1;92e288c33f6945422f7186f5a0f64bd2 1313 212265217 e8b47d04c46180590bd8d531634e9578;047bce616ffb0524e0bfc0b796b2c081 SAMEA5786053 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531035/ERR3531035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531035/ERR3531035_2.fastq.gz 2496208 WGS 717828 RANDOM 155698630;158970065 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d0bc50dd47739eb0e33eaceb1bfcf2e7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531035/ERR3531035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531035/ERR3531035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531035/717828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531035/717828.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531035/ERR3531035_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531035/ERR3531035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531035/717828.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531035/717828.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 149179230;152430931 ERS3756195 ERX3549172 GENOMIC 495716177 2019-09-19 717828 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531035/717828.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531035/717828.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531035 717828 ERR3531038 720251 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531038 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531038 6a03c8f3f16b73f8599446a73e80f618;cf68b1ba982848e7e0650f65549ce4ff 1313 449465214 d2b79371156c647589a3616cd7e9245e;a7a23eff0735ca1072b291aecb883d6f SAMEA5785883 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531038/ERR3531038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531038/ERR3531038_2.fastq.gz 5140287 WGS 720251 RANDOM 332353163;329377129 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c46f3539a9575425ee8825950ccf24bd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531038/ERR3531038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531038/ERR3531038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531038/720251.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531038/720251.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531038/ERR3531038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531038/ERR3531038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531038/720251.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531038/720251.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 317377611;314432513 ERS3756026 ERX3549003 GENOMIC 1006378701 2019-09-19 720251 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531038/720251.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531038/720251.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531038 720251 ERR3531039 717822 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531039 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531039 0bc93be4adfb95f0092448c6a71ea702;cb5d973a015aceb64388ab0ebe6d3e60 1313 194583147 d4018af4f8f1a44b7f41e696c012eb34;93cf1f76825d869dd56ac90ceaded25e SAMEA5786057 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531039/ERR3531039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531039/ERR3531039_2.fastq.gz 2279628 WGS 717822 RANDOM 142118838;146581106 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 04420687fe6d043b0527c46bdf3c8187 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531039/ERR3531039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531039/ERR3531039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531039/717822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531039/717822.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531039/ERR3531039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531039/ERR3531039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531039/717822.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531039/717822.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136133872;140578059 ERS3756199 ERX3549176 GENOMIC 454863803 2019-09-19 717822 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531039/717822.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531039/717822.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531039 717822 ERR3531036 720999 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531036 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531036 494cec05ad7ab9005505ca29938c2c9a;697ab996fdcaa22ac66c3555e2ab242b 1313 20174930 755d8f8020f314b91190583e1d73387f;2637ab275c46713b0babb11e661013f2 SAMEA5785810 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531036/ERR3531036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531036/ERR3531036_2.fastq.gz 210549 WGS 720999 RANDOM 14477280;14728188 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 781e7ae41031d5b0adacd0e1a6a36e88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531036/ERR3531036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531036/ERR3531036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531036/720999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531036/720999.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531036/ERR3531036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531036/ERR3531036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531036/720999.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531036/720999.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 13963955;14210048 ERS3755953 ERX3548930 GENOMIC 40630587 2019-09-19 720999 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531036/720999.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531036/720999.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531036 720999 ERR3531037 753481 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531037 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531037 558f7f1226093d71db0c337e04630a37;9670143aa9d0946002469d9e1ea4573d 1313 75062542 c2ac034e1edfbe4c880bdb224beb6a04;6e709b564648ab562541d745ff8f1598 SAMEA5785711 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531037/ERR3531037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531037/ERR3531037_2.fastq.gz 824032 WGS 753481 RANDOM 53896393;55848870 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5da06c7b3211b3c4d931d23ebcf89821 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531037/ERR3531037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531037/ERR3531037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531037/753481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531037/753481.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531037/ERR3531037_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531037/ERR3531037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531037/753481.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531037/753481.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 51835130;53786384 ERS3755854 ERX3548831 GENOMIC 161740782 2019-09-19 753481 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531037/753481.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531037/753481.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531037 753481 ERR3531040 308623 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531040 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531040 e0316ab19ab4831eaac84a8a14360f30;7d0f184a471cd30e2715d84b64b304bc 1313 224754273 e526bdd194d6dc57ae2e6c07acec529e;8b47f35b8129b58ed7f72603995f9c3c SAMEA5786171 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531040/ERR3531040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531040/ERR3531040_2.fastq.gz 2475588 WGS 308623 RANDOM 163015180;165830896 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d755373180247c9520547cdd397c44d9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531040/ERR3531040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531040/ERR3531040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531040/308623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531040/308623.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531040/ERR3531040_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531040/ERR3531040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531040/308623.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531040/308623.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 156680649;159489865 ERS3756313 ERX3549290 GENOMIC 490536531 2019-09-19 308623 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531040/308623.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531040/308623.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531040 308623 ERR3531041 720961 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531041 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531041 2f2a1aebf92c21959299006f79db2ff5;8958da4c86fdfdcb4f20254f02c94395 1313 243424780 a8b169b42fd8b9658cd4c87815626599;471ee56636105cd5a51cbaeec2681a51 SAMEA5785847 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531041/ERR3531041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531041/ERR3531041_2.fastq.gz 2541947 WGS 720961 RANDOM 174911681;176195392 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 6291ea9d3d1a27491b46bf351c26fff0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531041/ERR3531041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531041/ERR3531041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531041/720961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531041/720961.R2.fastq.gz ILLUMINA 2019-10-12 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531041/ERR3531041_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531041/ERR3531041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531041/720961.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531041/720961.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 168352961;169622900 ERS3755990 ERX3548967 GENOMIC 500603100 2019-09-19 720961 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531041/720961.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531041/720961.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531041 720961 ERR3531042 758009 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531042 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531042 fe08b78ef5fb4b91fcf0d147681364dc;f455f54cc1b457cad596e6dff5f531b5 1313 113575010 7b38e763a8a9518f2ac031fee0b1babb;03aa26ee2aadc1db792a0dd8b7394621 SAMEA5785522 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531042/ERR3531042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531042/ERR3531042_2.fastq.gz 1359237 WGS 758009 RANDOM 82654104;87144683 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f35e074c4fe087e7ff97973c62b343b9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531042/ERR3531042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531042/ERR3531042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531042/758009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531042/758009.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531042/ERR3531042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531042/ERR3531042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531042/758009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531042/758009.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79179089;83654523 ERS3755665 ERX3548642 GENOMIC 270988006 2019-09-19 758009 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531042/758009.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531042/758009.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531042 758009 ERR3531043 756642 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531043 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531043 4df7e25abae05d7e9b1559b8acff4042;4ad098447ce1d5e2b5212a8cc3149283 1313 151658968 e44f76739503196062e1195f46521419;32af5219e8c2ec6475dd3f90afb8a977 SAMEA5785636 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531043/ERR3531043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531043/ERR3531043_2.fastq.gz 1649320 WGS 756642 RANDOM 110754154;111918258 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 792be6c841607cfd270b5c132c1aa4e9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531043/ERR3531043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531043/ERR3531043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531043/756642.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531043/756642.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531043/ERR3531043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531043/ERR3531043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531043/756642.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531043/756642.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 106451762;107581428 ERS3755779 ERX3548756 GENOMIC 328311712 2019-09-19 756642 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531043/756642.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531043/756642.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531043 756642 ERR3531045 308559 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531045 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531045 2e5e8ac701ff84556b11ad1beb8e6a5b;6b90f61f1c7b9fc02bf55de88b2156af 1313 255002594 96f4a6986dbe252936d68b750b24be05;b9590772a20fa20228c89e4a59ab4709 SAMEA5786228 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531045/ERR3531045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531045/ERR3531045_2.fastq.gz 2847901 WGS 308559 RANDOM 185382082;187879207 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1183ecfc293753355146eb7e6eda0e27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531045/ERR3531045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531045/ERR3531045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531045/308559.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531045/308559.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531045/ERR3531045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531045/ERR3531045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531045/308559.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531045/308559.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 177897406;180395749 ERS3756370 ERX3549347 GENOMIC 557729623 2019-09-19 308559 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531045/308559.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531045/308559.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531045 308559 ERR3530808 720972 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3530808 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530808 900c1b481b5eb3da97c5394d31a4ef90;1623fe381f8ce626033d97ee36578bdd 1313 338734525 04ae7013a0c22f27ba61dc0f65aece7e;88a2514aaced3ce345f8edcd53041203 SAMEA5785836 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530808/ERR3530808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530808/ERR3530808_2.fastq.gz 3541148 WGS 720972 RANDOM 244037116;246645333 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 862d1c7bdcc91a4c0a9ef88477bc99d2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530808/ERR3530808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3530808/ERR3530808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530808/720972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530808/720972.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530808/ERR3530808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3530808/ERR3530808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530808/720972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530808/720972.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 234069969;236645259 ERS3755979 ERX3548956 GENOMIC 701176491 2019-09-19 720972 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530808/720972.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530808/720972.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3530808 720972 ERR3531046 753468 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531046 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531046 b2cd4ebce812d0cab74e8ccd7fcafebb;a552a65517c9c9465b4ef1252f9ee6f5 1313 1174604186 7e3c9ca5f19b825cf388f22768034056;44ddab05eb2d12e63546c4549487b92f SAMEA5785722 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531046/ERR3531046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531046/ERR3531046_2.fastq.gz 12894779 WGS 753468 RANDOM 836779199;868791341 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 03d925939e9344eff96ce7a647c17421 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531046/ERR3531046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531046/ERR3531046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531046/753468.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531046/753468.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531046/ERR3531046_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531046/ERR3531046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531046/753468.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531046/753468.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 800599183;832500189 ERS3755865 ERX3548842 GENOMIC 2560073515 2019-09-19 753468 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531046/753468.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531046/753468.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531046 753468 ERR3531047 311478 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531047 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531047 8fac8c4b615fde139d84f7247cca971b;122682094ef59b030c2cd6beba10e7b2 1313 129349268 0270a7f0d4770de31e18faee8da3b890;fce773940cb10f0eee54444f9fa5cafc SAMEA5786146 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531047/ERR3531047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531047/ERR3531047_2.fastq.gz 1443718 WGS 311478 RANDOM 94195666;95249556 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bcd56d4b5c5c190e63760dca5917bd83 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531047/ERR3531047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531047/ERR3531047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531047/311478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531047/311478.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531047/ERR3531047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531047/ERR3531047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531047/311478.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531047/311478.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90415511;91474141 ERS3756288 ERX3549265 GENOMIC 284750692 2019-09-19 311478 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531047/311478.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531047/311478.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531047 311478 ERR3530835 759541 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3530835 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530835 7c91cd71e339abf0aff0ad1b6491b70d;862cc22e8bbddf1f5ac59695a2986e18 1313 176051816 ae7561d7196168743413b9f13de1f551;6b3c328cde117f8e26168b9b14bf4c6a SAMEA5785466 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530835/ERR3530835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530835/ERR3530835_2.fastq.gz 2078531 WGS 759541 RANDOM 129447330;132406408 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 51a69a57cb74eeacccc9d789a934c61c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530835/ERR3530835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3530835/ERR3530835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530835/759541.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530835/759541.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530835/ERR3530835_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3530835/ERR3530835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530835/759541.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530835/759541.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 123947672;126885514 ERS3755609 ERX3548586 GENOMIC 413811896 2019-09-19 759541 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530835/759541.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530835/759541.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3530835 759541 ERR3531050 289698 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531050 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531050 927b3d6b5a9a888fc2d2247ef55bd7be;39f7e8333badbb9dc787733b4d9ebc27 1313 277152640 b98e55f54b6860bb0dafb16b9407b844;dc9d186f03f6c5c6f45c60a803b83560 SAMEA5786309 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531050/ERR3531050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531050/ERR3531050_2.fastq.gz 3060245 WGS 289698 RANDOM 198393759;198277252 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1b0907db836388d50553c216adf37ef7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531050/ERR3531050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531050/ERR3531050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531050/289698.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531050/289698.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531050/ERR3531050_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531050/ERR3531050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531050/289698.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531050/289698.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 190464410;190359799 ERS3756451 ERX3549428 GENOMIC 591787936 2019-09-19 289698 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531050/289698.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531050/289698.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531050 289698 ERR3531049 308591 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531049 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531049 5ea018cb4bf6368a15473055dcf71b5f;71b5428c151659a09d25c25ffd01cc51 1313 258712541 c3caf8df98852e4c45ae12e69313fb0c;4dc43e4998fcd8bb12388aa090e7c857 SAMEA5786197 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531049/ERR3531049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531049/ERR3531049_2.fastq.gz 2873516 WGS 308591 RANDOM 187876140;191798835 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 879710f7133b2ee7ac01461adf84405a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531049/ERR3531049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531049/ERR3531049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531049/308591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531049/308591.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531049/ERR3531049_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531049/ERR3531049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531049/308591.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531049/308591.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 180343899;184256499 ERS3756339 ERX3549316 GENOMIC 570984337 2019-09-19 308591 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531049/308591.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531049/308591.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531049 308591 ERR3531051 758010 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531051 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531051 647d014bc87386440db806db853cbf35;d850bb1d5548816b80566755fea8df5b 1313 89362686 646c735aef0ad552d454c7e5d5528974;1e681b5b6d914adcedbfe1020c066479 SAMEA5785521 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531051/ERR3531051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531051/ERR3531051_2.fastq.gz 1076487 WGS 758010 RANDOM 65275466;68486033 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 395479f82850db60d19241e6fe81ded6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531051/ERR3531051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531051/ERR3531051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531051/758010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531051/758010.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531051/ERR3531051_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531051/ERR3531051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531051/758010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531051/758010.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 62519885;65724498 ERS3755664 ERX3548641 GENOMIC 213786217 2019-09-19 758010 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531051/758010.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531051/758010.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531051 758010 ERR3530853 720229 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3530853 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530853 e1427933dc8044100afa87f68ac31d09;751c48302c63f3287a5ef70bfa90119f 1313 108142922 ac8ceee23b569d7fe265877d95d6bf4b;433650536d046de3172a2ca9e17420dd SAMEA5785905 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530853/ERR3530853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530853/ERR3530853_2.fastq.gz 1210255 WGS 720229 RANDOM 78875625;80176867 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 45e510cb2f5df4fb85639118d830bb55 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530853/ERR3530853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3530853/ERR3530853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530853/720229.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530853/720229.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530853/ERR3530853_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3530853/ERR3530853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530853/720229.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530853/720229.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 75781623;77074233 ERS3756048 ERX3549025 GENOMIC 240050064 2019-09-19 720229 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530853/720229.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530853/720229.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3530853 720229 ERR3531054 753473 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531054 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531054 7cef868db4fd2a84f89e559d55bdb9ee;2357a61c052a3e5f3d9259dcde286010 1313 99088398 21d3a1a8cbbf5161a126861adcf47b12;aa79efff4037cfc84ecd125d7d360927 SAMEA5785718 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531054/ERR3531054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531054/ERR3531054_2.fastq.gz 1100998 WGS 753473 RANDOM 72837588;72853535 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f041d172faef30fbf36516e35fd5be19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531054/ERR3531054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531054/ERR3531054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531054/753473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531054/753473.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531054/ERR3531054_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531054/ERR3531054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531054/753473.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531054/753473.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 70028267;70046695 ERS3755861 ERX3548838 GENOMIC 218427838 2019-09-19 753473 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531054/753473.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531054/753473.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531054 753473 ERR3531053 304293 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531053 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531053 0d94d2f9746d453a2b388217568f1496;fd65583c5947dff0248a3f4f3a376c03 1313 182001870 ddac4ee4923e8f73f256fc06d2004188;1b72513ac668da1ab0579fd96f059e14 SAMEA5786234 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531053/ERR3531053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531053/ERR3531053_2.fastq.gz 2123333 WGS 304293 RANDOM 133899691;136087992 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 27ab913ab88ebca50bac123c5e6c287a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531053/ERR3531053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531053/ERR3531053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531053/304293.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531053/304293.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531053/ERR3531053_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531053/ERR3531053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531053/304293.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531053/304293.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 128381634;130557705 ERS3756376 ERX3549353 GENOMIC 423346421 2019-09-19 304293 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531053/304293.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531053/304293.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531053 304293 ERR3531052 756640 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531052 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531052 0781c9a67b78bc3c6241adf474c42f88;defccd69a6e3d4367e04278cdf1ed205 1313 164308559 a9856db4afccfedbdc1b0c71645530d0;637eab2c0c45c043d8ec15ee08447f08 SAMEA5785638 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531052/ERR3531052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531052/ERR3531052_2.fastq.gz 1775220 WGS 756640 RANDOM 119517712;121541083 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7877526b857c041864b571b2afef7003 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531052/ERR3531052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531052/ERR3531052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531052/756640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531052/756640.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531052/ERR3531052_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531052/ERR3531052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531052/756640.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531052/756640.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 114860022;116850910 ERS3755781 ERX3548758 GENOMIC 354288033 2019-09-19 756640 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531052/756640.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531052/756640.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531052 756640 ERR3530860 720197 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3530860 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530860 f37d80f873544498929d386e32f2a0b2;aa7d5a34978c692c5d58049cd521da28 1313 85619364 cbed5615f1b96fd8ccbe6e666897747c;d8d2f312c5e94777ae413fc9606bc331 SAMEA5785938 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530860/ERR3530860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530860/ERR3530860_2.fastq.gz 950846 WGS 720197 RANDOM 62479616;63440744 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bd182b73ff593e6e0ba2e18b4886eb4d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530860/ERR3530860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3530860/ERR3530860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530860/720197.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530860/720197.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530860/ERR3530860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3530860/ERR3530860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530860/720197.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530860/720197.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 60064466;61009766 ERS3756080 ERX3549057 GENOMIC 189377907 2019-09-19 720197 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530860/720197.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530860/720197.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3530860 720197 ERR3530862 756607 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530862 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530862 e4619ace15313332a8e564a65a09906c;9d9f3829fd02f8106e75cb71b420c7d4 1313 104444838 6ed62285c4cae6e3c2666abdbcf3247c;7947b1c5302ec23c2f6b9f5e0db08d44 SAMEA5785670 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530862/ERR3530862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530862/ERR3530862_2.fastq.gz 1106743 WGS 756607 RANDOM 73811300;77944882 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 07e6263e5ae3bfda9aba5ed8cfd9b97e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530862/ERR3530862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530862/ERR3530862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530862/756607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530862/756607.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530862/ERR3530862_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530862/ERR3530862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530862/756607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530862/756607.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71036904;75093087 ERS3755813 ERX3548790 GENOMIC 219287457 2019-09-19 756607 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530862/756607.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530862/756607.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530862 756607 ERR3531058 756644 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531058 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531058 105e014dc4ca0c3915653b7de066d762;fc2fde8d77fecd72d196a4b990a65fa5 1313 150600932 94f771283e4811b46c82e8aba4511558;4ec785879cde92387248242f395aa3ee SAMEA5785634 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531058/ERR3531058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531058/ERR3531058_2.fastq.gz 1636643 WGS 756644 RANDOM 109897634;110971778 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c1bb4d7fefa44994387355640b24525c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531058/ERR3531058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531058/ERR3531058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531058/756644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531058/756644.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531058/ERR3531058_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531058/ERR3531058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531058/756644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531058/756644.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105582985;106628699 ERS3755777 ERX3548754 GENOMIC 324099461 2019-09-19 756644 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531058/756644.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531058/756644.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531058 756644 ERR3531059 757952 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531059 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531059 b67f072273964dcd88007fb38bc40501;bb7c3c93925768e4104a40d14c4d0224 1313 104799850 caeaf7272af386c4a476866eb3404e52;cbb55c8b8d745c2979a5ed5c04f43d83 SAMEA5785578 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531059/ERR3531059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531059/ERR3531059_2.fastq.gz 1247328 WGS 757952 RANDOM 75074527;80929928 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cfdd61a13e83a2eb0e3e492e3398256c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531059/ERR3531059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531059/ERR3531059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531059/757952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531059/757952.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531059/ERR3531059_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531059/ERR3531059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531059/757952.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531059/757952.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 71907109;77755908 ERS3755721 ERX3548698 GENOMIC 246401588 2019-09-19 757952 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531059/757952.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531059/757952.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531059 757952 ERR3531060 759512 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531060 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531060 2bdb1c0540d45b9ee6dff2476097dc7b;0c7e43678292e43b601e321318eb9f3a 1313 244089937 e4d2471e966b1bc5c40a82ffa9eb2068;217a120343c9162d98b7f3ca7eb349c1 SAMEA5785495 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531060/ERR3531060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531060/ERR3531060_2.fastq.gz 2915659 WGS 759512 RANDOM 180183275;183671806 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ace0dbc52c8aa66fc922318bc7bafa25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531060/ERR3531060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531060/ERR3531060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531060/759512.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531060/759512.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531060/ERR3531060_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531060/ERR3531060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531060/759512.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531060/759512.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 172447966;175909356 ERS3755638 ERX3548615 GENOMIC 581586783 2019-09-19 759512 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531060/759512.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531060/759512.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531060 759512 ERR3530871 720236 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3530871 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530871 813d63e0528d98ea0dbe21e3b7651ae5;e401f77940097f52b718737bde47ba47 1313 97326859 af9fc7e312694249ed8d765c13f3aaef;051b272e5846173f35dd8ef3b104cc06 SAMEA5785898 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530871/ERR3530871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530871/ERR3530871_2.fastq.gz 1060342 WGS 720236 RANDOM 69022171;72824374 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0ff93f3cb2e95871ebac9efea858445c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530871/ERR3530871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3530871/ERR3530871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530871/720236.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530871/720236.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530871/ERR3530871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3530871/ERR3530871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530871/720236.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530871/720236.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 66308870;70063562 ERS3756041 ERX3549018 GENOMIC 210383654 2019-09-19 720236 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530871/720236.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530871/720236.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3530871 720236 ERR3531062 757991 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531062 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531062 f915877e1c385610b33fab427f68a302;3f8d7c716b3377d70f583d1dfdd9ac31 1313 224878038 20d035e4ee0e45965873fb8b535559ff;e838fae97f4a86db0dc506bc87051875 SAMEA5785539 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531062/ERR3531062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531062/ERR3531062_2.fastq.gz 2746347 WGS 757991 RANDOM 166162029;169950083 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3594b36e6fe49de1248c74bcd5e08c22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531062/ERR3531062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531062/ERR3531062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531062/757991.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531062/757991.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531062/ERR3531062_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531062/ERR3531062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531062/757991.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531062/757991.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 159006945;162774152 ERS3755682 ERX3548659 GENOMIC 544102265 2019-09-19 757991 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531062/757991.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531062/757991.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531062 757991 ERR3531063 311487 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531063 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531063 e09df671d1eadfa8200b3af32e82e7a8;c5c1b631d1dada6667cf092b149c338a 1313 173196952 6934fcf1f127873dd1c646bdb7c4c3f5;4e347b8a8d7f4574867276799a8bccce SAMEA5786137 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531063/ERR3531063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531063/ERR3531063_2.fastq.gz 1921773 WGS 311487 RANDOM 125496162;127688083 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c4c864e97bdc14769b8a8b49ce71032a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531063/ERR3531063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531063/ERR3531063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531063/311487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531063/311487.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531063/ERR3531063_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531063/ERR3531063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531063/311487.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531063/311487.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120313246;122500872 ERS3756279 ERX3549256 GENOMIC 378163770 2019-09-19 311487 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531063/311487.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531063/311487.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531063 311487 ERR3530892 717910 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3530892 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530892 0b651015e1029507367d8c9905027287;460812e938f59321b62eb684aa2231c8 1313 151159891 b143b8cf7da23ddbf175fcb14199b195;4b30d83fd9d02516b62e753838d122e5 SAMEA5786018 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530892/ERR3530892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530892/ERR3530892_2.fastq.gz 1822222 WGS 717910 RANDOM 112704140;113676633 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b1ea77e8c8177c5bc77dd7f0b59979f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530892/ERR3530892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3530892/ERR3530892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530892/717910.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530892/717910.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530892/ERR3530892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3530892/ERR3530892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530892/717910.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530892/717910.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 107804655;108766248 ERS3756160 ERX3549137 GENOMIC 362004142 2019-09-19 717910 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530892/717910.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530892/717910.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3530892 717910 ERR3531064 757993 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531064 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531064 9d8682e1882d837b35a825900c6d70a7;c502963d53c48c2c52d755286fd9b9d6 1313 213627612 ad13326e00acf7eb97090a3472386a2f;6acda38894f7fac8cdef3d3b555518a4 SAMEA5785537 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531064/ERR3531064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531064/ERR3531064_2.fastq.gz 2602398 WGS 757993 RANDOM 157531191;161788031 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5a9faf45e4ecdf2598a89849e0ef59c3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531064/ERR3531064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531064/ERR3531064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531064/757993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531064/757993.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531064/ERR3531064_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531064/ERR3531064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531064/757993.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531064/757993.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 150824895;155047891 ERS3755680 ERX3548657 GENOMIC 518183429 2019-09-19 757993 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531064/757993.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531064/757993.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531064 757993 ERR3531066 753488 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531066 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531066 3824e81a601872e61cfa0cf9a8e2a885;64e511a3b45078dc42e36d73f77553ed 1313 154400825 a1a72bb048dfd89a6b1b1f81c2ffc855;b07c171752abcd5346aeab33bc7cdffb SAMEA5785704 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531066/ERR3531066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531066/ERR3531066_2.fastq.gz 1727984 WGS 753488 RANDOM 114054819;113646838 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 19dc1a0ffe91b08abe9280621afd7bac ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531066/ERR3531066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531066/ERR3531066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531066/753488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531066/753488.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531066/ERR3531066_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531066/ERR3531066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531066/753488.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531066/753488.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109487210;109095666 ERS3755847 ERX3548824 GENOMIC 342665099 2019-09-19 753488 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531066/753488.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531066/753488.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531066 753488 ERR3531067 717987 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531067 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531067 77fbdbe5c6f2cea20269f6ad8d45c94b;0c0d1b47b6717a07cca32b84b283c8dd 1313 129139660 2df1f2dca7bbe2d17abf5eaecff3e621;e4df0fb00d09bd2ef2ed1810aa950d0b SAMEA5785957 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531067/ERR3531067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531067/ERR3531067_2.fastq.gz 1500409 WGS 717987 RANDOM 94165227;96881219 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 76f765524401e48c921ea21416ace3d0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531067/ERR3531067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531067/ERR3531067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531067/717987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531067/717987.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531067/ERR3531067_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531067/ERR3531067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531067/717987.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531067/717987.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 90201076;92905656 ERS3756099 ERX3549076 GENOMIC 293816457 2019-09-19 717987 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531067/717987.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531067/717987.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531067 717987 ERR3531068 651038 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531068 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531068 a08c5f659f0efcfa621421832fff032c;6deea7db602aba4bfd38c1eae3dd7de8 1313 198055771 809aab8cfc6e6ac7c1782c84d9af8363;4761f2371c66644bd3d885640fa4a9a7 SAMEA5786110 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531068/ERR3531068_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531068/ERR3531068_2.fastq.gz 2172537 WGS 651038 RANDOM 141688321;148892729 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 7136ae66f129e12b5bceeecd3aed26b1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531068/ERR3531068_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531068/ERR3531068_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531068/651038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531068/651038.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531068/ERR3531068_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531068/ERR3531068_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531068/651038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531068/651038.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 136079499;143246512 ERS3756252 ERX3549229 GENOMIC 432908636 2019-09-19 651038 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531068/651038.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531068/651038.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531068 651038 ERR3531070 642769 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531070 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531070 e5ffd9ab865f65638baaa4623cc93266;7f31794201572932159f1812e2c1dc11 1313 38483930 0dfcd9052d46607896f326867c4bd32d;7714615706e10f47121e8e24a1e506be SAMEA5786122 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531070/ERR3531070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531070/ERR3531070_2.fastq.gz 487702 WGS 642769 RANDOM 28766855;29603183 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c08e892505a672cbf9aeb7694fa38be1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531070/ERR3531070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531070/ERR3531070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531070/642769.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531070/642769.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531070/ERR3531070_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531070/ERR3531070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531070/642769.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531070/642769.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 27564522;28386657 ERS3756264 ERX3549241 GENOMIC 97108017 2019-09-19 642769 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531070/642769.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531070/642769.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531070 642769 ERR3531069 304279 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531069 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531069 efc578f30745ed993c7dbd06e6d0aca0;4e5049b89e06293880535144e1198002 1313 190564253 c045c66578fa6166e5e778bf5ed23032;22312b0a214100af4ea732179cff444a SAMEA5786246 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531069/ERR3531069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531069/ERR3531069_2.fastq.gz 2209011 WGS 304279 RANDOM 140371649;141549438 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d3ff9bce0a5e0b0104d99899de3a53dc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531069/ERR3531069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531069/ERR3531069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531069/304279.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531069/304279.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531069/ERR3531069_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531069/ERR3531069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531069/304279.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531069/304279.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 134659150;135817888 ERS3756388 ERX3549365 GENOMIC 438736653 2019-09-19 304279 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531069/304279.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531069/304279.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531069 304279 ERR3531071 720189 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531071 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531071 af9f842ab13a7185a15b694bc5ebb7c3;459d4c60d43ded5ebc21f5a107730a98 1313 149552152 54153d51db7f230b31fbf7f5efa07ab0;c8bfb08346c1b0bd5308d9334c8076c4 SAMEA5785946 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531071/ERR3531071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531071/ERR3531071_2.fastq.gz 1678607 WGS 720189 RANDOM 109763152;110693509 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c21c3df0791fd2a6f1ace48dabcaf70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531071/ERR3531071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531071/ERR3531071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531071/720189.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531071/720189.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531071/ERR3531071_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531071/ERR3531071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531071/720189.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531071/720189.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 105309357;106222593 ERS3756088 ERX3549065 GENOMIC 334146930 2019-09-19 720189 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531071/720189.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531071/720189.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531071 720189 ERR3531073 304276 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531073 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531073 b5e6a3de6ee5e255a322e778dd35a868;d69f6feb4172d78d516a3aa4b5c50f1b 1313 157580859 1e53501395576cc3ad2cb12e6f001617;642bcf34b840d9671dbc92f254741e09 SAMEA5786249 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531073/ERR3531073_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531073/ERR3531073_2.fastq.gz 1838205 WGS 304276 RANDOM 116228516;117260897 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2a38deabe06500c9176fdb088bf38031 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531073/ERR3531073_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531073/ERR3531073_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531073/304276.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531073/304276.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531073/ERR3531073_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531073/ERR3531073_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531073/304276.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531073/304276.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 111398262;112418141 ERS3756391 ERX3549368 GENOMIC 363300026 2019-09-19 304276 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531073/304276.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531073/304276.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531073 304276 ERR3531072 720224 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531072 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531072 74f270f511f0fc2b9b17239597a61181;6b969ef6a812bf1238de5f2e3baf1c02 1313 286990125 3e5ca2492759c89a4e6545362dea916d;da054320593ae20d7547de230e73843d SAMEA5785910 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531072/ERR3531072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531072/ERR3531072_2.fastq.gz 3237543 WGS 720224 RANDOM 208875561;211616678 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1430cbe1c570df695d31f0d0b72d7fff ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531072/ERR3531072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531072/ERR3531072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531072/720224.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531072/720224.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531072/ERR3531072_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531072/ERR3531072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531072/720224.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531072/720224.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 199885465;202613735 ERS3756053 ERX3549030 GENOMIC 631751490 2019-09-19 720224 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531072/720224.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531072/720224.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531072 720224 ERR3530909 300869 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3530909 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530909 b6ccd90f41de1eee1cfe477219b97d0e;3a4404cc3ae734cc8182cb18a3451390 1313 191751276 d4a415539e80b5baacc6c7fdcdf21fe1;768f4e5e753e832df41087ff537738b9 SAMEA5786271 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530909/ERR3530909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530909/ERR3530909_2.fastq.gz 2252813 WGS 300869 RANDOM 137867447;141377619 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2e87994faa22ca8da8036756b72fcf56 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530909/ERR3530909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3530909/ERR3530909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530909/300869.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530909/300869.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530909/ERR3530909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3530909/ERR3530909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530909/300869.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530909/300869.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 132237070;135712941 ERS3756413 ERX3549390 GENOMIC 443933191 2019-09-19 300869 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530909/300869.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530909/300869.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3530909 300869 ERR3531075 308607 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531075 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531075 6f6c1c99a8bd6519858fec32def01e2d;afeafd5481bfce558b6bf8fba3e4907e 1313 141613838 a330510105d98b083c4766e425079617;fd9b545914d658566d5c5dca7baf7d45 SAMEA5786183 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531075/ERR3531075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531075/ERR3531075_2.fastq.gz 1550241 WGS 308607 RANDOM 103390983;104486530 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2c94c604a4f111f17033bd2d5e83fa67 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531075/ERR3531075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531075/ERR3531075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531075/308607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531075/308607.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531075/ERR3531075_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531075/ERR3531075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531075/308607.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531075/308607.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99337272;100409957 ERS3756325 ERX3549302 GENOMIC 308007233 2019-09-19 308607 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531075/308607.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531075/308607.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531075 308607 ERR3531076 717972 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531076 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531076 3a0c1a4d2137dfa1d8af217232eaa89e;c64285f35f999b6758bf58c7ff58f2d3 1313 181282640 d07cb7f6fd259fc7c9d44926325995b0;b606c775392a9040d435c7b519c2c1b1 SAMEA5785969 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531076/ERR3531076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531076/ERR3531076_2.fastq.gz 2153979 WGS 717972 RANDOM 133270455;136683709 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d9837d70d8b9d583c837fe0e851244e3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531076/ERR3531076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531076/ERR3531076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531076/717972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531076/717972.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531076/ERR3531076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531076/ERR3531076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531076/717972.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531076/717972.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 127537145;130946648 ERS3756111 ERX3549088 GENOMIC 426715082 2019-09-19 717972 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531076/717972.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531076/717972.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531076 717972 ERR3531077 753434 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531077 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531077 389041580bc7e728aad4202412dbf1ae;c84d27885be2cb5759cd34211fb6e5ae 1313 109106239 ea5b62d1ae08af09aac3a4d737ded957;bc4d7780fb4dc1e3fe39170f48208822 SAMEA5785756 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531077/ERR3531077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531077/ERR3531077_2.fastq.gz 1175478 WGS 753434 RANDOM 76515543;82074137 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8ed3b1a3dd02d7376b2b6f8d0d99fb90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531077/ERR3531077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531077/ERR3531077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531077/753434.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531077/753434.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531077/ERR3531077_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531077/ERR3531077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531077/753434.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531077/753434.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 73562146;79103882 ERS3755899 ERX3548876 GENOMIC 232912345 2019-09-19 753434 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531077/753434.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531077/753434.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531077 753434 ERR3530977 717900 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3530977 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530977 24818b7ce819b7f74558462a017c4375;46133fd29d7c5e500a0dcf97ed974119 1313 205830581 0d60a21743d380f22eb7c371951a9821;9061fbce5f5ae1036a42a5be9895a099 SAMEA5786023 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530977/ERR3530977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530977/ERR3530977_2.fastq.gz 2463191 WGS 717900 RANDOM 152474318;154016164 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 0d613e24ffccf3a9c2ceb0b0bbfac4c1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530977/ERR3530977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3530977/ERR3530977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530977/717900.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530977/717900.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530977/ERR3530977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3530977/ERR3530977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530977/717900.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530977/717900.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 146115051;147638168 ERS3756165 ERX3549142 GENOMIC 490014704 2019-09-19 717900 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530977/717900.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530977/717900.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3530977 717900 ERR3531079 308581 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531079 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531079 e5f55b08c520d7a42a71c36f964e7383;a90284ac85861e1592f37e7f9208281d 1313 247986041 abb1db7ff6219e57640deb75ffae4972;138d09c8c1c9fe6beecee2895564d428 SAMEA5786207 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531079/ERR3531079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531079/ERR3531079_2.fastq.gz 2758842 WGS 308581 RANDOM 179997175;182563100 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4bf48b31081e23095d3b9f4741efd67e ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531079/ERR3531079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531079/ERR3531079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531079/308581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531079/308581.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531079/ERR3531079_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531079/ERR3531079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531079/308581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531079/308581.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 172795352;175366954 ERS3756349 ERX3549326 GENOMIC 539252023 2019-09-19 308581 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531079/308581.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531079/308581.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531079 308581 ERR3531080 756628 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531080 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531080 65824f307c81d365f246c8467795c8ef;1f764ba0ca175a1093c6b1aa3adecd4d 1313 168075016 c178417a0bf8994e9797dc43dc919364;7671cd4cca9edacf63bab760f6e96c99 SAMEA5785649 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531080/ERR3531080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531080/ERR3531080_2.fastq.gz 1828450 WGS 756628 RANDOM 122751975;124028032 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 90f716f56079615a2d5bf1251dba5980 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531080/ERR3531080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531080/ERR3531080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531080/756628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531080/756628.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531080/ERR3531080_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531080/ERR3531080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531080/756628.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531080/756628.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117937301;119186046 ERS3755792 ERX3548769 GENOMIC 363758834 2019-09-19 756628 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531080/756628.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531080/756628.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531080 756628 ERR3531081 757953 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531081 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531081 1a492592b0fe47c9c9731761c620b9ed;b774fff5a32f60af3f2ea80de28c0373 1313 80898743 dd933e2f767adb11ef56d5890f2194ad;06204a629a61046910a7c6bafc2d2a32 SAMEA5785577 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531081/ERR3531081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531081/ERR3531081_2.fastq.gz 958946 WGS 757953 RANDOM 57936932;62700948 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3c4e0bcc9c94904956d7b594ab156a2d ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531081/ERR3531081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531081/ERR3531081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531081/757953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531081/757953.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531081/ERR3531081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531081/ERR3531081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531081/757953.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531081/757953.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 55499689;60260027 ERS3755720 ERX3548697 GENOMIC 190978413 2019-09-19 757953 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531081/757953.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531081/757953.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531081 757953 ERR3531083 308614 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531083 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531083 5087af5b029af6c626c932132a9056fe;23292ddf2a2479e05e8cb035150dd908 1313 200361879 80b0210f11057c7f398112e69001e49a;22f18a0a554c30ddbf811ba0ae0555d1 SAMEA5786178 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531083/ERR3531083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531083/ERR3531083_2.fastq.gz 2202865 WGS 308614 RANDOM 145485242;147983785 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 969ae322fefdb637a2adac42dc7fb8df ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531083/ERR3531083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531083/ERR3531083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531083/308614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531083/308614.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531083/ERR3531083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531083/ERR3531083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531083/308614.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531083/308614.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 139730915;142218178 ERS3756320 ERX3549297 GENOMIC 436131517 2019-09-19 308614 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531083/308614.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531083/308614.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531083 308614 ERR3531082 717906 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531082 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531082 fc54b2c17298cb13b8192d6246944c38;0fbefc376d643e8c8e9e9afa3554f7f1 1313 153958528 775e42ff071649c3089feafae0a369f5;a403cd7ef0cbc70f8f672b22fbec2c6c SAMEA5786020 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531082/ERR3531082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531082/ERR3531082_2.fastq.gz 1844681 WGS 717906 RANDOM 114696687;115404264 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. efc023b0521dd7689da964318db80271 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531082/ERR3531082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531082/ERR3531082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531082/717906.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531082/717906.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531082/ERR3531082_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531082/ERR3531082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531082/717906.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531082/717906.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109733236;110438476 ERS3756162 ERX3549139 GENOMIC 365162492 2019-09-19 717906 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531082/717906.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531082/717906.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531082 717906 ERR3531084 756632 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531084 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531084 f4c91a68cbb47c388261ee37372e2491;aa7620ea1bf6d0ad1286274748e9aa4c 1313 113264207 ae94d416ae30f909c5cfb196cc55a4c8;b732fa46bf0458b002b41fd77c84f07d SAMEA5785645 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531084/ERR3531084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531084/ERR3531084_2.fastq.gz 1227166 WGS 756632 RANDOM 82258178;83608724 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 621e50901103bdbdeb23d65b08e98c27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531084/ERR3531084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531084/ERR3531084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531084/756632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531084/756632.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531084/ERR3531084_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531084/ERR3531084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531084/756632.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531084/756632.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 79189163;80512133 ERS3755788 ERX3548765 GENOMIC 243559527 2019-09-19 756632 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531084/756632.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531084/756632.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531084 756632 ERR3531085 753465 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531085 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531085 494f894397d7cb7d4e14d8cbdb2a8ad6;f6e9f4e9bd3cb256f022f6f0d0f6a55d 1313 1110345782 cfabee55fa6dda95efaaa6d3d292ab15;a00152eb437c87e352eafe6dde72afa5 SAMEA5785725 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531085/ERR3531085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531085/ERR3531085_2.fastq.gz 12194236 WGS 753465 RANDOM 791910604;820320548 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cfd52498821b18559996cb105e53b4b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531085/ERR3531085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531085/ERR3531085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531085/753465.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531085/753465.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531085/ERR3531085_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531085/ERR3531085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531085/753465.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531085/753465.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 757702567;786027040 ERS3755868 ERX3548845 GENOMIC 2417708727 2019-09-19 753465 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531085/753465.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531085/753465.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531085 753465 ERR3531086 720213 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531086 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531086 d5530f204b32a20563a5339972a1db5d;ce527b0b2f9294fecb1a19b9acfe5e18 1313 166973169 2e94ec02d6d2896ceeb8f49c04983667;a97ecffc6ba42a56ed83e5077bcc42b1 SAMEA5785922 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531086/ERR3531086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531086/ERR3531086_2.fastq.gz 1900402 WGS 720213 RANDOM 123057132;123263021 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. aafd994dfab8bb8ef3468676e9d6ca81 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531086/ERR3531086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531086/ERR3531086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531086/720213.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531086/720213.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531086/ERR3531086_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531086/ERR3531086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531086/720213.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531086/720213.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 117915731;118123941 ERS3756064 ERX3549041 GENOMIC 374174556 2019-09-19 720213 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531086/720213.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531086/720213.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531086 720213 ERR3531088 304300 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531088 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531088 45260c944b5d486db295aeaec012c1bb;99d3db0c8c4f0ec2179d877736c43a55 1313 184347640 69a49e62aa1a3d68d375433d65148fd4;f8240e44f8143f4e351f33873676dccb SAMEA5786229 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531088/ERR3531088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531088/ERR3531088_2.fastq.gz 2141717 WGS 304300 RANDOM 135499484;137228120 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a009387561b37321027b9a3f38e1d6d5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531088/ERR3531088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531088/ERR3531088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531088/304300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531088/304300.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531088/ERR3531088_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531088/ERR3531088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531088/304300.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531088/304300.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 129953481;131666330 ERS3756371 ERX3549348 GENOMIC 425408010 2019-09-19 304300 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531088/304300.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531088/304300.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531088 304300 ERR3531089 757965 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531089 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531089 0f51077e86cbf64f60c7cbf8bd29394d;c2f9184f5490c40014b34fb445e3d55b 1313 96684638 46b93f17fbc5afa4f13534d78a039a1f;cfc73b6f94f23b10081aed28078b2599 SAMEA5785565 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531089/ERR3531089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531089/ERR3531089_2.fastq.gz 1172907 WGS 757965 RANDOM 71656828;73289775 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a9a9d852d58f1064a6166840ce4eb921 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531089/ERR3531089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531089/ERR3531089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531089/757965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531089/757965.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531089/ERR3531089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531089/ERR3531089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531089/757965.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531089/757965.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 68661609;70289074 ERS3755708 ERX3548685 GENOMIC 232973514 2019-09-19 757965 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531089/757965.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531089/757965.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531089 757965 ERR3531087 759535 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531087 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531087 0d22a6526756392b10a13a42150379c6;3ccd7de7d7074543568f414a653a5c85 1313 173459535 01c42abfa881e8558e1e003bf04b0d5b;2c9387ed3426366d791d6938408c2fb3 SAMEA5785472 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531087/ERR3531087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531087/ERR3531087_2.fastq.gz 2032901 WGS 759535 RANDOM 125849885;131911400 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8434a3553f90b676f8822033edfd277a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531087/ERR3531087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531087/ERR3531087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531087/759535.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531087/759535.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531087/ERR3531087_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531087/ERR3531087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531087/759535.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531087/759535.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 120441951;126499896 ERS3755615 ERX3548592 GENOMIC 405205282 2019-09-19 759535 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531087/759535.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531087/759535.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531087 759535 ERR3530986 717894 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3530986 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530986 ba06a53b1076e5a8b89adb78ce3db643;cae6ae498a22ddec649611e0ae8e35b9 1313 137812513 82e08504e1b5aeb61cee86bee13c76dc;e67a9831cff4840f5d415e7d64bbfadd SAMEA5786026 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530986/ERR3530986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530986/ERR3530986_2.fastq.gz 1656268 WGS 717894 RANDOM 102526326;103888545 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 947f6838134a6320d0bf40ecf53689a1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530986/ERR3530986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3530986/ERR3530986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530986/717894.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530986/717894.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530986/ERR3530986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3530986/ERR3530986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530986/717894.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3530986/717894.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98137230;99492631 ERS3756168 ERX3549145 GENOMIC 330266383 2019-09-19 717894 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530986/717894.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3530986/717894.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3530986 717894 ERR3531091 717971 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531091 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531091 0a0755a55e10eeaaf11b861749e134dc;4d2b3b328d9ce4917401c37163344944 1313 118285062 d7c79829990a748e316d998725bc79aa;835f0ae73b618d4dda1314cfbb3164ce SAMEA5785970 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531091/ERR3531091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531091/ERR3531091_2.fastq.gz 1376601 WGS 717971 RANDOM 86656397;88722831 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. da8600d6598bb879e5cb5e16a1063d29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531091/ERR3531091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531091/ERR3531091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531091/717971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531091/717971.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531091/ERR3531091_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531091/ERR3531091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531091/717971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531091/717971.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 83109187;85169574 ERS3756112 ERX3549089 GENOMIC 271444250 2019-09-19 717971 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531091/717971.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531091/717971.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531091 717971 ERR3531093 720977 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531093 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531093 91679e0545d4cf824df252c4bd4ad06e;67600f83107ece68205c548b2c74ab3c 1313 199905962 c2707cb3ebf74a101f6579f54569fd32;81bfb929d2732a29d04537bbd53dcb9e SAMEA5785831 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531093/ERR3531093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531093/ERR3531093_2.fastq.gz 2051568 WGS 720977 RANDOM 141258503;145964803 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 3e5a8a2e9ab4d7da673ccb721cf8b53f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531093/ERR3531093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531093/ERR3531093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531093/720977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531093/720977.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531093/ERR3531093_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531093/ERR3531093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531093/720977.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531093/720977.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 135914344;140534778 ERS3755974 ERX3548951 GENOMIC 405735761 2019-09-19 720977 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531093/720977.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531093/720977.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531093 720977 ERR3531005 759549 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531005 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531005 32d1b4f7b6ed10633572830b1c7470e7;95cd413baa1449b729906a6789709d1d 1313 176312953 b3606ee2ccce648d24f5068552eb4f69;60a719bd0f8d22a4a36329f0ff301f88 SAMEA5785458 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531005/ERR3531005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531005/ERR3531005_2.fastq.gz 2063662 WGS 759549 RANDOM 127453766;134104520 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ffbb33b50a50dae315548e837b12c0e5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531005/ERR3531005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531005/ERR3531005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531005/759549.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531005/759549.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531005/ERR3531005_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531005/ERR3531005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531005/759549.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531005/759549.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122010549;128641185 ERS3755601 ERX3548578 GENOMIC 410824104 2019-09-19 759549 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531005/759549.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531005/759549.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531005 759549 ERR3531095 756597 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531095 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531095 ac1f253e261b6fcdb5dc5e3e6d51d160;8d718147d85c37374ae54fb58635d525 1313 250933892 f680004af10644609a8a1152a539be25;763fd48822c4b43ac34233474ef91863 SAMEA5785680 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531095/ERR3531095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531095/ERR3531095_2.fastq.gz 2703361 WGS 756597 RANDOM 179956652;186206894 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ae4261c6475385d86cb80246c202b1bf ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531095/ERR3531095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531095/ERR3531095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531095/756597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531095/756597.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531095/ERR3531095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531095/ERR3531095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531095/756597.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531095/756597.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 173010337;179193269 ERS3755823 ERX3548800 GENOMIC 538488939 2019-09-19 756597 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531095/756597.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531095/756597.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531095 756597 ERR3531092 717882 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531092 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531092 473b1be4f0c765e94a75908cb75d2a2a;2be29ca36e22b922f706379c37795bc3 1313 175450867 8ad21daae144d5980aa817e7f541b25d;aa67a958287c000bfa847846934df207 SAMEA5786032 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531092/ERR3531092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531092/ERR3531092_2.fastq.gz 2078411 WGS 717882 RANDOM 130017445;131745949 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 9bb2bb24401877297cfad946e241d15b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531092/ERR3531092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531092/ERR3531092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531092/717882.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531092/717882.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531092/ERR3531092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531092/ERR3531092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531092/717882.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531092/717882.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 124553112;126265518 ERS3756174 ERX3549151 GENOMIC 415121379 2019-09-19 717882 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531092/717882.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531092/717882.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531092 717882 ERR3531096 759529 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531096 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531096 dead77a9a01dd42488b8d48dbd043ced;64b892e7be30bf0b37b05bc66e0b63e1 1313 141381216 63c4f6c7fbe62c793648697e2d67cd90;da862d8a19ed349cc1598f5eb7cc977a SAMEA5785478 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531096/ERR3531096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531096/ERR3531096_2.fastq.gz 1678221 WGS 759529 RANDOM 104116016;106833136 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d6ab14eaebbc1dec36e9f44c26366c8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531096/ERR3531096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531096/ERR3531096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531096/759529.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531096/759529.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531096/ERR3531096_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531096/ERR3531096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531096/759529.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531096/759529.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99664761;102370833 ERS3755621 ERX3548598 GENOMIC 333851626 2019-09-19 759529 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531096/759529.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531096/759529.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531096 759529 ERR3531014 757946 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531014 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531014 e197bd24c210a6aac7aed0425d8ffd79;75a67421dec4de84918fcff9e04c5a87 1313 130866791 22e8a904293b204ceefb2c80aec71a81;bed7e325f992c1ef63cdb2fc8f1f05f9 SAMEA5785582 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531014/ERR3531014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531014/ERR3531014_2.fastq.gz 1572176 WGS 757946 RANDOM 95605422;100062909 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 631e016150f2d32bde1577442c08cefd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531014/ERR3531014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531014/ERR3531014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531014/757946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531014/757946.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531014/ERR3531014_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531014/ERR3531014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531014/757946.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531014/757946.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 91496710;95954517 ERS3755725 ERX3548702 GENOMIC 312437174 2019-09-19 757946 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531014/757946.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531014/757946.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531014 757946 ERR3531098 721732 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531098 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531098 c4bb50df3bea82c5bfa7242e66377984;6728823a3b9390003baa26eb9e6499bb 1313 35570640 ff30361ef752c95b7e8aa81e7b2043eb;1b467b025cdfe23398fd01e2baed20e8 SAMEA5785786 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531098/ERR3531098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531098/ERR3531098_2.fastq.gz 377766 WGS 721732 RANDOM 25236261;26112492 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8e62ac7279055166ab4ea678178cf206 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531098/ERR3531098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531098/ERR3531098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531098/721732.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531098/721732.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531098/ERR3531098_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531098/ERR3531098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531098/721732.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531098/721732.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 24311438;25184302 ERS3755929 ERX3548906 GENOMIC 72141105 2019-09-19 721732 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531098/721732.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531098/721732.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531098 721732 ERR3531100 304296 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531100 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531100 0082e028b8c5fa95fad29c1ce6f2a68a;8f9bd743fb4ab1bef59550707f13e3ce 1313 161197049 e4a21e4a8ed85509c270f16fc388bdc8;9f6e05da2bb2570cb249f9581901a169 SAMEA5786232 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531100/ERR3531100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531100/ERR3531100_2.fastq.gz 1881715 WGS 304296 RANDOM 118699514;120203956 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 2e950fbf545ecbe745607a2477fd3f79 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531100/ERR3531100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531100/ERR3531100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531100/304296.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531100/304296.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531100/ERR3531100_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531100/ERR3531100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531100/304296.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531100/304296.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113746979;115237624 ERS3756374 ERX3549351 GENOMIC 373042222 2019-09-19 304296 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531100/304296.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531100/304296.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531100 304296 ERR3531099 308630 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531099 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531099 34a7590212e5ac4b97bd17e69741ae38;e6db1420dc79e4029b0c6681b106e62f 1313 339358364 def85d86f8838081d8cbf29014522637;9138aa3e45577d3132be8e9049aaa06b SAMEA5786164 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531099/ERR3531099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531099/ERR3531099_2.fastq.gz 3717636 WGS 308630 RANDOM 245026117;251638407 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e9bab3c2c83ce44daed9335cb0220e5b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531099/ERR3531099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531099/ERR3531099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531099/308630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531099/308630.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531099/ERR3531099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531099/ERR3531099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531099/308630.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531099/308630.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 234505843;241119668 ERS3756306 ERX3549283 GENOMIC 734709386 2019-09-19 308630 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531099/308630.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531099/308630.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531099 308630 ERR3531101 304258 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531101 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531101 386eb4f736330be70c8d179737995e0f;80062a668acb5536ca46717c1a5939aa 1313 133982201 3eac6e19bba5de064157cebb5f708c49;5e8fe467118c7529eb0f6290a9338ba6 SAMEA5786265 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531101/ERR3531101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531101/ERR3531101_2.fastq.gz 1522334 WGS 304258 RANDOM 97514780;100375573 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5e607bbf33860dc944e3763c21923a18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531101/ERR3531101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531101/ERR3531101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531101/304258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531101/304258.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531101/ERR3531101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531101/ERR3531101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531101/304258.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531101/304258.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 93584504;96442359 ERS3756407 ERX3549384 GENOMIC 303022341 2019-09-19 304258 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531101/304258.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531101/304258.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531101 304258 ERR3531103 717866 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531103 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531103 9d884b8b3a9c111db42995ef818a6480;5f627ca6b95f1e799425f59e02dabd86 1313 144068939 d5bf233a8815948b1840ef0db5b619bc;c4201712a1c6e823cb3ac54fe416c935 SAMEA5786039 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531103/ERR3531103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531103/ERR3531103_2.fastq.gz 1716558 WGS 717866 RANDOM 106795411;108443410 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 8dd9f3feb95ca6bb6bea22c4562cf569 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531103/ERR3531103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531103/ERR3531103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531103/717866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531103/717866.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531103/ERR3531103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531103/ERR3531103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531103/717866.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531103/717866.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 102225769;103859527 ERS3756181 ERX3549158 GENOMIC 342800511 2019-09-19 717866 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531103/717866.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531103/717866.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531103 717866 ERR3531102 753469 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531102 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531102 45f461a3791fedf64c8b8a4a5221a4ac;ea39096b2ac7813438f653ba3596eff0 1313 418727364 26929298cba588e716bde10e59221399;c6d5e7a99258d82bc1581ed71c3d4897 SAMEA5785721 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531102/ERR3531102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531102/ERR3531102_2.fastq.gz 4558929 WGS 753469 RANDOM 298687199;311629772 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. c1b8dea9279d7a98a4b57463c2c3c8ac ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531102/ERR3531102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531102/ERR3531102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531102/753469.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531102/753469.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531102/ERR3531102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531102/ERR3531102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531102/753469.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531102/753469.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 285610084;298569415 ERS3755864 ERX3548841 GENOMIC 905684693 2019-09-19 753469 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531102/753469.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531102/753469.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531102 753469 ERR3531105 289701 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531105 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531105 0d7a0a8a8ca15de3c4e8f3554f8b6f68;c3f6b2e4bb9d56ce2ad1ee5c24333a42 1313 287098800 693d105dd0056417839c0219a8ea47e2;d555a27bed0d09588582d9fdcaeeb1e8 SAMEA5786308 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531105/ERR3531105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531105/ERR3531105_2.fastq.gz 3125371 WGS 289701 RANDOM 204487519;206334158 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 4b0cb1fb9f8d1a5714c75d348ff013a2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531105/ERR3531105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531105/ERR3531105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531105/289701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531105/289701.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531105/ERR3531105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531105/ERR3531105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531105/289701.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531105/289701.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 196396052;198237713 ERS3756450 ERX3549427 GENOMIC 613842568 2019-09-19 289701 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531105/289701.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531105/289701.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531105 289701 ERR3531104 308637 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531104 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531104 e8c09346c1ef5e1ceb71ac97fb760426;588ff0e0df66693651b711fc38831571 1313 213990529 0c308ff6c8f67711351642b5b018a681;7575c7344dfcb2f44567fde2f25e7d69 SAMEA5786157 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531104/ERR3531104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531104/ERR3531104_2.fastq.gz 2364557 WGS 308637 RANDOM 155679206;157541494 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 402d0a6c0e852e6815ae85257f3c5e13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531104/ERR3531104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531104/ERR3531104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531104/308637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531104/308637.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531104/ERR3531104_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531104/ERR3531104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531104/308637.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531104/308637.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 149598175;151457406 ERS3756299 ERX3549276 GENOMIC 466411002 2019-09-19 308637 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531104/308637.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531104/308637.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531104 308637 ERR3531106 308629 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531106 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531106 a8b802ff908e5fa5ae78fefdc07b9ca3;0abdffe74d29323436c4c6e7c059bde1 1313 291997861 f656eedbc7037f3e202e3233a3dbc6f1;55e805dbb3d116d1d6c828a3d152f7e8 SAMEA5786165 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531106/ERR3531106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531106/ERR3531106_2.fastq.gz 3247315 WGS 308629 RANDOM 212805364;215944596 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cd10199d405fefb2ab6329b9923997fd ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531106/ERR3531106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531106/ERR3531106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531106/308629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531106/308629.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531106/ERR3531106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531106/ERR3531106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531106/308629.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531106/308629.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 203955258;207099154 ERS3756307 ERX3549284 GENOMIC 641701445 2019-09-19 308629 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531106/308629.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531106/308629.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531106 308629 ERR3531108 720209 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531108 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531108 eeefd1dcc9e32fcade1ff10e8c7dd5c2;78c8639df5c7ff9aec7c72f20dd97e10 1313 139279089 3d99a551b865ba7f0664b52780b3d56e;ec84a1f6121e9c4392ab0cd27f85052e SAMEA5785926 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531108/ERR3531108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531108/ERR3531108_2.fastq.gz 1561046 WGS 720209 RANDOM 102042371;103046913 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 49953adc969c4eb7341645f8271b36bc ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531108/ERR3531108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531108/ERR3531108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531108/720209.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531108/720209.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531108/ERR3531108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531108/ERR3531108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531108/720209.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531108/720209.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 97939792;98935139 ERS3756068 ERX3549045 GENOMIC 310563130 2019-09-19 720209 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531108/720209.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531108/720209.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531108 720209 ERR3531107 717920 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531107 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531107 f705a43820675de1990924d6d8fc91b0;39c3475e30b2b7bb94dc89187e2bd489 1313 137752562 ed3a2757634327a75ffc9b87c38c3620;e49d3f8af65a80f9ffc4a45466d553dc SAMEA5786013 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531107/ERR3531107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531107/ERR3531107_2.fastq.gz 1649636 WGS 717920 RANDOM 102654979;103645827 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 57246f8e480500d31c001e7874f2261f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531107/ERR3531107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531107/ERR3531107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531107/717920.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531107/717920.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531107/ERR3531107_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531107/ERR3531107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531107/717920.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531107/717920.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 98279733;99263979 ERS3756155 ERX3549132 GENOMIC 328909385 2019-09-19 717920 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531107/717920.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531107/717920.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531107 717920 ERR3531110 757971 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531110 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531110 6a2e7ed7dde77460c83a82aa7aafd18e;bb9ee097e07b86c578776be7cb5c1bff 1313 173041818 df2454a6b0952e65a0400ca8a1a431ea;c81ad0c2cb6c5914ab8801c9e36f6cea SAMEA5785559 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531110/ERR3531110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531110/ERR3531110_2.fastq.gz 2122336 WGS 757971 RANDOM 128559070;131362486 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. e4def308ad2675d8bbd8f4d3fdf3d4b7 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531110/ERR3531110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531110/ERR3531110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531110/757971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531110/757971.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531110/ERR3531110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531110/ERR3531110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531110/757971.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531110/757971.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 122959875;125749687 ERS3755702 ERX3548679 GENOMIC 422729216 2019-09-19 757971 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531110/757971.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531110/757971.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531110 757971 ERR3531109 753431 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531109 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531109 fa1e6aafff2a3f28e05bb106ea671ee9;0a36cfccc9eb8c4bc17aa81f998a8507 1313 77302527 88df36d29279a291a12ae7dbb2d140a7;552439e1153e8db7dfd2691a9cf24c6c SAMEA5785759 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531109/ERR3531109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531109/ERR3531109_2.fastq.gz 829090 WGS 753431 RANDOM 54016182;58323733 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 136995fd86f00f309004c325dd62e324 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531109/ERR3531109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531109/ERR3531109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531109/753431.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531109/753431.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531109/ERR3531109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531109/ERR3531109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531109/753431.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531109/753431.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 51952304;56231767 ERS3755902 ERX3548879 GENOMIC 164506091 2019-09-19 753431 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531109/753431.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531109/753431.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531109 753431 ERR3531078 756666 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531078 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531078 74d71fabf277af9da2056f83607ec183;7c1d7221325303108f3ec66fbd3d34ef 1313 145164031 6a18640d6cf3a83aa0d6125d02d96abe;f1f2cf66ad6571f19ebf59372c6c9d96 SAMEA5785612 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531078/ERR3531078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531078/ERR3531078_2.fastq.gz 1549449 WGS 756666 RANDOM 103916408;107977569 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. cc3b7652db1d02c721f3867ee43b4ee2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531078/ERR3531078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531078/ERR3531078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531078/756666.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531078/756666.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531078/ERR3531078_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531078/ERR3531078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531078/756666.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531078/756666.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 99940268;103920347 ERS3755755 ERX3548732 GENOMIC 308620732 2019-09-19 756666 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531078/756666.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531078/756666.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531078 756666 ERR3531112 651723 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531112 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531112 ef99ea70aec48f44d13a35bb433d8535;9280cfad55ccb092e08af5ab5fee9f41 1313 287037701 8abf30e068aa415927ed118f5b0d6b75;fcc457846b6f4e68e104fab5046acf6f SAMEA5786103 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531112/ERR3531112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531112/ERR3531112_2.fastq.gz 3357897 WGS 651723 RANDOM 211512923;214930242 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 97a7044ceac9247ed09eb2697b878311 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531112/ERR3531112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531112/ERR3531112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531112/651723.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531112/651723.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531112/ERR3531112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531112/ERR3531112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531112/651723.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531112/651723.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 202114544;205532449 ERS3756245 ERX3549222 GENOMIC 668568369 2019-09-19 651723 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531112/651723.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531112/651723.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531112 651723 ERR3531113 720214 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531113 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531113 7910d1214edf33915bc3b118ec332661;310e7902363726f8b463454f99ffb15b 1313 264664918 717c733fe46e2f296051b1800e87256c;57631368aa61df241fbb135e6618043a SAMEA5785921 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531113/ERR3531113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531113/ERR3531113_2.fastq.gz 3039129 WGS 720214 RANDOM 195623918;194190252 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. bf012d9368908b2b2494c868438e308b ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531113/ERR3531113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531113/ERR3531113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531113/720214.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531113/720214.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531113/ERR3531113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531113/ERR3531113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531113/720214.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531113/720214.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 187336555;185913973 ERS3756063 ERX3549040 GENOMIC 596591235 2019-09-19 720214 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531113/720214.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531113/720214.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531113 720214 ERR3531115 300852 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531115 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531115 15a4b9414128216b09b65e55ce8a5ef4;329fd57ed4b3d3352b8e8ff42b72124b 1313 62761414 031369072b687176b85af65526ef999c;43e47fa9a0dcf2f631bec0182479caaf SAMEA5786288 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531115/ERR3531115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531115/ERR3531115_2.fastq.gz 737817 WGS 300852 RANDOM 45759045;46162173 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. fb4d06ea90f454f05a995bad626147f6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531115/ERR3531115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531115/ERR3531115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531115/300852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531115/300852.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531115/ERR3531115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531115/ERR3531115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531115/300852.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531115/300852.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 44007648;44395164 ERS3756430 ERX3549407 GENOMIC 145653115 2019-09-19 300852 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531115/300852.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531115/300852.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531115 300852 ERR3531097 717956 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531097 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531097 023bfaf540233bf6f3fbc3466b05a652;2e3d7069625a8afed530e013846ca375 1313 181674401 5524d5c5bb45558f6ef6614b424d7b7e;5f18132181156d7239cead9c49b28504 SAMEA5785984 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531097/ERR3531097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531097/ERR3531097_2.fastq.gz 2179606 WGS 717956 RANDOM 134484858;136787094 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b0068c042bc44c911e7b195df1f9804f ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531097/ERR3531097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531097/ERR3531097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531097/717956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531097/717956.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531097/ERR3531097_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531097/ERR3531097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531097/717956.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531097/717956.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 128695226;130982483 ERS3756126 ERX3549103 GENOMIC 434324738 2019-09-19 717956 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531097/717956.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531097/717956.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531097 717956 ERR3531116 651037 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531116 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531116 f1c79eb9fb2ce359979bf6bde8539507;0fd9db4fd34d448c5fec33c0dbb9488a 1313 173013453 4ce04df6f199bb6170f8a203b4953939;13a76056f9e37728c8c36fea272ede84 SAMEA5786111 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531116/ERR3531116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531116/ERR3531116_2.fastq.gz 1879011 WGS 651037 RANDOM 123562171;129967488 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. a9e336164b43db8de75a01d21202b021 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531116/ERR3531116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531116/ERR3531116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531116/651037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531116/651037.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531116/ERR3531116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531116/ERR3531116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531116/651037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531116/651037.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 118637792;124984755 ERS3756253 ERX3549230 GENOMIC 373441653 2019-09-19 651037 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531116/651037.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531116/651037.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531116 651037 ERR3531117 753420 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/007/ERR3531117 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531117 192287918fa2636222955adcdb7b697b;6a40efe51a4acf2b5db360864e1f8c25 1313 81206556 a07689b2f6a8f49a7687378cf46215ed;277672de427d5959ffcc7ecb1c2081dc SAMEA5785770 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531117/ERR3531117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531117/ERR3531117_2.fastq.gz 885833 WGS 753420 RANDOM 58230501;60620944 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 039d729965d5b8e90614eb9dfa3844a5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531117/ERR3531117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/007/ERR3531117/ERR3531117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531117/753420.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531117/753420.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531117/ERR3531117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/007/ERR3531117/ERR3531117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531117/753420.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531117/753420.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 56024252;58409283 ERS3755913 ERX3548890 GENOMIC 176004651 2019-09-19 753420 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531117/753420.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531117/753420.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/007/ERR3531117 753420 ERR3531118 753455 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/008/ERR3531118 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531118 cc00925b667247545fd0b8a1a2f0eb72;a83d8eea2a037da249fa9079c0a83fe7 1313 142673274 d484b9722f9e5f56647eef8879933fab;4dfebadef920ce413fa84bfc98994d81 SAMEA5785735 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531118/ERR3531118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531118/ERR3531118_2.fastq.gz 1581388 WGS 753455 RANDOM 104288505;105072993 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. eecacc2996c01f11e4970507559a41c4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531118/ERR3531118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/008/ERR3531118/ERR3531118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531118/753455.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531118/753455.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531118/ERR3531118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/008/ERR3531118/ERR3531118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531118/753455.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531118/753455.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 100108227;100895211 ERS3755878 ERX3548855 GENOMIC 312651573 2019-09-19 753455 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531118/753455.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531118/753455.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/008/ERR3531118 753455 ERR3531119 756661 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/009/ERR3531119 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531119 c4fb5b0b9dd8663e6747df3628608b4b;d7420fc8b543e02163203f1a5cc634bd 1313 180863816 b436c95000747803ecd8d6348515859b;927221a7b5dab1949a764e5213cdad99 SAMEA5785617 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531119/ERR3531119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531119/ERR3531119_2.fastq.gz 1963791 WGS 756661 RANDOM 131550746;133745333 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. d26fb7271b31155e19599ffdb89613d6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531119/ERR3531119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/009/ERR3531119/ERR3531119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531119/756661.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531119/756661.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531119/ERR3531119_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/009/ERR3531119/ERR3531119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531119/756661.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531119/756661.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 126369644;128533741 ERS3755760 ERX3548737 GENOMIC 391542885 2019-09-19 756661 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531119/756661.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531119/756661.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/009/ERR3531119 756661 ERR3531120 308636 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/000/ERR3531120 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531120 e4333f311bc8171aebda6785d2c90c91;a644996913c1c2dc56a56238072f1080 1313 236686189 8a04787b222f632f006b5a4f9cb21e39;d34228debdb676f495952a5ddf6b11c9 SAMEA5786158 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531120/ERR3531120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531120/ERR3531120_2.fastq.gz 2594640 WGS 308636 RANDOM 170812080;174908634 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 580119f8ee2ed717440be409a4a9a217 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531120/ERR3531120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/000/ERR3531120/ERR3531120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531120/308636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531120/308636.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531120/ERR3531120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/000/ERR3531120/ERR3531120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531120/308636.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531120/308636.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 164164207;168248970 ERS3756300 ERX3549277 GENOMIC 513888466 2019-09-19 308636 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531120/308636.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531120/308636.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/000/ERR3531120 308636 ERR3531121 651031 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/001/ERR3531121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531121 f23403dece1535ea6d360213719f66e5;93b2ee8fbb0abe2946d4dc6489e1246e 1313 193607105 7cfaa69614872154d9ba3047b7c4b428;30fd58f7ecb2e52b399ea5b69c39fd56 SAMEA5786116 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531121/ERR3531121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531121/ERR3531121_2.fastq.gz 2167742 WGS 651031 RANDOM 140616121;144445182 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. b3ec90363b36f0a91988ff2f7d99ca5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531121/ERR3531121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/001/ERR3531121/ERR3531121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531121/651031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531121/651031.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531121/ERR3531121_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/001/ERR3531121/ERR3531121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531121/651031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531121/651031.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 134962465;138791252 ERS3756258 ERX3549235 GENOMIC 428239489 2019-09-19 651031 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531121/651031.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531121/651031.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/001/ERR3531121 651031 ERR3531122 721017 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/002/ERR3531122 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531122 55194c2bc91a8579cb0ef6ddb33fd920;0da1546808a9d98144830743153f0d15 1313 164258282 490017300d8eef1951e37a92b4a8b9a7;196158f90f1198e303ff3603a1956988 SAMEA5785792 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531122/ERR3531122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531122/ERR3531122_2.fastq.gz 1721013 WGS 721017 RANDOM 118446923;119813838 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 5b634e4d953b47c15ac34a4b44c2c604 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531122/ERR3531122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/002/ERR3531122/ERR3531122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531122/721017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531122/721017.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531122/ERR3531122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/002/ERR3531122/ERR3531122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531122/721017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531122/721017.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 113857271;115199343 ERS3755935 ERX3548912 GENOMIC 340328019 2019-09-19 721017 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531122/721017.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531122/721017.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/002/ERR3531122 721017 ERR3531123 753482 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/003/ERR3531123 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531123 7db87381510fa08f23e687576ba96b4b;8ca4afbc8f4153955ba5d5a6b5e0cc1a 1313 492802486 0a6d12a906ada53df2adcfc1b212bbdc;54ff63b9e6f9c962da88aa8eccb5a8be SAMEA5785710 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531123/ERR3531123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531123/ERR3531123_2.fastq.gz 5310293 WGS 753482 RANDOM 351631703;364655731 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. f5ceef7a16fc829f7f28f0b7c5d4dc90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531123/ERR3531123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/003/ERR3531123/ERR3531123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531123/753482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531123/753482.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531123/ERR3531123_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/003/ERR3531123/ERR3531123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531123/753482.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531123/753482.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 336374800;349375216 ERS3755853 ERX3548830 GENOMIC 1054800741 2019-09-19 753482 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531123/753482.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531123/753482.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/003/ERR3531123 753482 ERR3531124 667371 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/004/ERR3531124 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531124 beec93eec9b87ef84fe9bff8e42542ad;4a1a1f9a323dc702dabac71d76da9b1c 1313 193114163 6fec722eff6b68e7a75aeee0f54077d4;c8bf524048bc0ab5b2ee319e00a824e0 SAMEA5786067 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531124/ERR3531124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531124/ERR3531124_2.fastq.gz 2035505 WGS 667371 RANDOM 136581500;143421656 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. ccd7b32dcc2fa7682619f1f2d762f758 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531124/ERR3531124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/004/ERR3531124/ERR3531124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531124/667371.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531124/667371.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531124/ERR3531124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/004/ERR3531124/ERR3531124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531124/667371.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531124/667371.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 131262294;137989156 ERS3756209 ERX3549186 GENOMIC 403160094 2019-09-19 667371 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531124/667371.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531124/667371.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/004/ERR3531124 667371 ERR3531125 753457 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/005/ERR3531125 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531125 6056037caf968bdc834097e1f81ca2ef;213c7355f6f47425dbdf5116b4fbafe4 1313 55091780 0b280cdba9145e0bc7cbfa45da0a6a1d;fecaaefd801da607aa1df0aee64bc4d0 SAMEA5785733 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531125/ERR3531125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531125/ERR3531125_2.fastq.gz 598049 WGS 753457 RANDOM 39457911;40932103 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 1780e50945773cd58b2bf7000e5b55b5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531125/ERR3531125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/005/ERR3531125/ERR3531125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531125/753457.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531125/753457.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531125/ERR3531125_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/005/ERR3531125/ERR3531125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531125/753457.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531125/753457.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 37983324;39451965 ERS3755876 ERX3548853 GENOMIC 118381264 2019-09-19 753457 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531125/753457.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531125/753457.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/005/ERR3531125 753457 ERR1437924 PHESPD0005 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437924 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437924 a2a00825575e5f4fed75d7be580409b4;e403517218426cdc9d80f02b8d72a44f 1313 124493352 1d9f7aa17511b8103df170841316c7e5;546f039ae1d11876613e32eb8b4a3156 SAMEA4022193 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437924/ERR1437924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437924/ERR1437924_2.fastq.gz 1461703 WGS PHESPD0005 RANDOM 83921528;84436535 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21fe698c3b820819ed605a06ce7ffa6a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437924/ERR1437924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437924/ERR1437924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437924/PHESPD0005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437924/PHESPD0005.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437924/ERR1437924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437924/ERR1437924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437924/PHESPD0005.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437924/PHESPD0005.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88782862;89277348 ERS1193303 ERX1508302 GENOMIC 282608352 2016-06-10 PHESPD0005 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437924/PHESPD0005.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437924/PHESPD0005.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437924 PHESPD0005 ERR1437923 PHESPD0004 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437923 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437923 e8ccc6cf92123576bbc29240d16645e5;5b4c05bd81366fca45131baa39d4003c 1313 109241477 324bac1749579276446a8b91602ebff7;a9e2166f65e71582dc0482cacd0e1155 SAMEA4022192 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437923/ERR1437923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437923/ERR1437923_2.fastq.gz 1185618 WGS PHESPD0004 RANDOM 72790786;74529237 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 982be22fead60f1b33677962e3a0b275 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437923/ERR1437923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437923/ERR1437923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437923/PHESPD0004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437923/PHESPD0004.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437923/ERR1437923_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437923/ERR1437923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437923/PHESPD0004.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437923/PHESPD0004.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 76825637;78526447 ERS1193302 ERX1508301 GENOMIC 234350039 2016-06-10 PHESPD0004 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437923/PHESPD0004.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437923/PHESPD0004.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437923 PHESPD0004 ERR3531126 304298 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR353/006/ERR3531126 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531126 2ae33f711e0f78f1f00a5b0fc4bc229c;d6a285da175f6366a2297ec8f8ffebf9 1313 155173178 51ee22329e9f8712d35f692e55532d90;d4e266ad7fb74873711e263dd81d87e8 SAMEA5786230 2019-09-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531126/ERR3531126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531126/ERR3531126_2.fastq.gz 1794790 WGS 304298 RANDOM 114306099;115566202 FASTQ;FASTQ Streptococcus pneumoniae The Genomics of Streptococcus pneumoniae carriage isolates from children and their household contacts, pre-PCV7 to post-PCV13. 32af465d091c4c400c6654cfc04f9d50 ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531126/ERR3531126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR353/006/ERR3531126/ERR3531126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531126/304298.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531126/304298.R2.fastq.gz ILLUMINA 2019-09-25 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531126/ERR3531126_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR353/006/ERR3531126/ERR3531126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531126/304298.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR353/ERR3531126/304298.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB34491 ERP117401 109580922;110833830 ERS3756372 ERX3549349 GENOMIC 355880090 2019-09-19 304298 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531126/304298.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR353/ERR3531126/304298.R2.fastq.gz s_pneumo_carriage_study Illumina HiSeq 2500 paired end sequencing ERA2127121 ftp.sra.ebi.ac.uk/vol1/err/ERR353/006/ERR3531126 304298 ERR1437925 PHESPD0006 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437925 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437925 d4ba35a618789ee0c2c4f02a0b8d1db0;28c9cb707ce2383922f08fbfac0b4ddf 1313 173642458 dc579229a21b258ec1c40724b1195293;ca2336821013a52b3c2524f48677f9dd SAMEA4022194 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437925/ERR1437925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437925/ERR1437925_2.fastq.gz 2048134 WGS PHESPD0006 RANDOM 117264460;118475057 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2a0eacf53fe1f296b8d306b6de17b4c8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437925/ERR1437925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437925/ERR1437925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437925/PHESPD0006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437925/PHESPD0006.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437925/ERR1437925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437925/ERR1437925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437925/PHESPD0006.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437925/PHESPD0006.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 123838220;125017288 ERS1193304 ERX1508303 GENOMIC 396559492 2016-06-10 PHESPD0006 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437925/PHESPD0006.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437925/PHESPD0006.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437925 PHESPD0006 ERR1437926 PHESPD0007 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437926 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437926 3b5c0cbb050923d06949c9a14e77fde2;3ff36eba4b0daccad9890be105c5e008 1313 32354491 29812923a42560657ecbb4ee0c84c040;fbf4eec2ecef7b1cf26f4a8518c58cdd SAMEA4022195 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437926/ERR1437926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437926/ERR1437926_2.fastq.gz 447170 WGS PHESPD0007 RANDOM 22078704;22977411 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 70667cde2bfed8d5c6f1ef1ccec18fab ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437926/ERR1437926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437926/ERR1437926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437926/PHESPD0007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437926/PHESPD0007.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437926/ERR1437926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437926/ERR1437926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437926/PHESPD0007.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437926/PHESPD0007.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 23795999;24686895 ERS1193305 ERX1508304 GENOMIC 88640770 2016-06-10 PHESPD0007 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437926/PHESPD0007.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437926/PHESPD0007.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437926 PHESPD0007 ERR1437927 PHESPD0008 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437927 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437927 5d4f9897fcd27a2a313b5e9019a6fbef;c1c4370fe549f1e0442e0670b7652999 1313 24804900 da88a1a8a85afa525ef854a954f9c88e;5bbb183a2530a2c849f26d72034d0082 SAMEA4022196 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437927/ERR1437927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437927/ERR1437927_2.fastq.gz 344103 WGS PHESPD0008 RANDOM 16885038;17517512 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9a214bcae91af33dfa89cc5b48ce4a2d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437927/ERR1437927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437927/ERR1437927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437927/PHESPD0008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437927/PHESPD0008.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437927/ERR1437927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437927/ERR1437927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437927/PHESPD0008.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437927/PHESPD0008.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 18242632;18867095 ERS1193306 ERX1508305 GENOMIC 68189031 2016-06-10 PHESPD0008 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437927/PHESPD0008.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437927/PHESPD0008.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437927 PHESPD0008 ERR1437929 PHESPD0010 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437929 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437929 c1d9bd0678c4fd6ba0f95c7b408dd3fc;894eefd43ed2040fe5617f0097fa7aa8 1313 162234064 84bd7dfd2bb973d185f782b7c3e0b7d1;b6e8d4f7c50fbd0ad572c2cb3964cb36 SAMEA4022198 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437929/ERR1437929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437929/ERR1437929_2.fastq.gz 1916454 WGS PHESPD0010 RANDOM 109204509;110817619 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d47eb488dfe93ff42832372e7d93b444 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437929/ERR1437929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437929/ERR1437929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437929/PHESPD0010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437929/PHESPD0010.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437929/ERR1437929_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437929/ERR1437929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437929/PHESPD0010.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437929/PHESPD0010.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115447905;117011596 ERS1193308 ERX1508307 GENOMIC 371113286 2016-06-10 PHESPD0010 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437929/PHESPD0010.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437929/PHESPD0010.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437929 PHESPD0010 ERR1437930 PHESPD0011 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437930 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437930 c1c6508a351efa7a4c0cdc3d866937aa;2060744848b582321b27e15fb23e192c 1313 32751719 4269fbbab20dcd0991c3f1e54848b64d;aad42866cc0530f632c3ffc8716a4dd9 SAMEA4022199 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437930/ERR1437930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437930/ERR1437930_2.fastq.gz 449986 WGS PHESPD0011 RANDOM 22080398;23336758 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline bda11680e91e7fbacf086ec06e002502 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437930/ERR1437930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437930/ERR1437930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437930/PHESPD0011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437930/PHESPD0011.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437930/ERR1437930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437930/ERR1437930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437930/PHESPD0011.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437930/PHESPD0011.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 23803136;25051576 ERS1193309 ERX1508308 GENOMIC 89184653 2016-06-10 PHESPD0011 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437930/PHESPD0011.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437930/PHESPD0011.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437930 PHESPD0011 ERR1437928 PHESPD0009 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437928 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437928 463ee5812c5cb088e74b88953573fefe;00e4cb909d141452414f6308a1cc2f2d 1313 134877195 8a4ec89be0b6425721d3cf56dffa7571;16cbce8c77fe337d033a7d08a3ee0dfd SAMEA4022197 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437928/ERR1437928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437928/ERR1437928_2.fastq.gz 1586393 WGS PHESPD0009 RANDOM 90642188;92291868 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 21d7a328c5011ecc69b92e2534c6b8a4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437928/ERR1437928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437928/ERR1437928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437928/PHESPD0009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437928/PHESPD0009.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437928/ERR1437928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437928/ERR1437928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437928/PHESPD0009.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437928/PHESPD0009.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 95932308;97518371 ERS1193307 ERX1508306 GENOMIC 306885700 2016-06-10 PHESPD0009 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437928/PHESPD0009.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437928/PHESPD0009.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437928 PHESPD0009 ERR1437931 PHESPD0012 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437931 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437931 43bbdfde8f0dd2c04eac89b347e8fe9b;90f022ef4fde9da501e3f1931110f5b6 1313 37911511 715e88ed207fe7013046d3a61e1a4ed7;54e1199237f30108949bdbc773157377 SAMEA4022200 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437931/ERR1437931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437931/ERR1437931_2.fastq.gz 526744 WGS PHESPD0012 RANDOM 25971487;27032813 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 19541fbfb071c895c05c21979dc44279 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437931/ERR1437931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437931/ERR1437931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437931/PHESPD0012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437931/PHESPD0012.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437931/ERR1437931_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437931/ERR1437931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437931/PHESPD0012.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437931/PHESPD0012.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 27955882;29007567 ERS1193310 ERX1508309 GENOMIC 104443278 2016-06-10 PHESPD0012 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437931/PHESPD0012.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437931/PHESPD0012.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437931 PHESPD0012 ERR1437933 PHESPD0014 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437933 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437933 efb0a89b1912a267c93b671d2badf3b3;0d9b90ea83805d240d5351099f5c682c 1313 47248060 e0ce8a8a5afcd1ec97d4117e431ffab7;ea7c94241443d9ee657e4a3783f7eed5 SAMEA4022202 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437933/ERR1437933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437933/ERR1437933_2.fastq.gz 658423 WGS PHESPD0014 RANDOM 32410950;33681499 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2d373f17b6d6856d50309cca6f1f13fe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437933/ERR1437933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437933/ERR1437933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437933/PHESPD0014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437933/PHESPD0014.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437933/ERR1437933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437933/ERR1437933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437933/PHESPD0014.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437933/PHESPD0014.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 34818305;36078073 ERS1193312 ERX1508311 GENOMIC 130563529 2016-06-10 PHESPD0014 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437933/PHESPD0014.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437933/PHESPD0014.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437933 PHESPD0014 ERR1437932 PHESPD0013 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437932 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437932 02709b876955ee7d1f5ae4c9310371d0;263cef5c58dff850ed0d4b0c3e34bea6 1313 174244663 f25bca2198df4277a7174537790ae0bd;503cdb576f841609654a49d04e3fede8 SAMEA4022201 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437932/ERR1437932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437932/ERR1437932_2.fastq.gz 1802381 WGS PHESPD0013 RANDOM 113529928;118874938 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0625d554e5c94f0154bc02576cf20247 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437932/ERR1437932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437932/ERR1437932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437932/PHESPD0013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437932/PHESPD0013.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437932/ERR1437932_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437932/ERR1437932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437932/PHESPD0013.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437932/PHESPD0013.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 119405297;124637344 ERS1193311 ERX1508310 GENOMIC 354158101 2016-06-10 PHESPD0013 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437932/PHESPD0013.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437932/PHESPD0013.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437932 PHESPD0013 ERR1437935 PHESPD0016 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437935 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437935 5d1bcd23aabd1e42141889eb7fecebd4;c331b726abdc771b5cbc9ca337a1b502 1313 124898184 1a94f9218fe4a8f61ef979ba2224a857;4b3bbf1d9b8e9ec6e76a670982bc4f30 SAMEA4022204 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437935/ERR1437935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437935/ERR1437935_2.fastq.gz 1535914 WGS PHESPD0016 RANDOM 85344830;86356096 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 52185e64e68f6f8d5d62720ffc828398 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437935/ERR1437935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437935/ERR1437935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437935/PHESPD0016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437935/PHESPD0016.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437935/ERR1437935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437935/ERR1437935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437935/PHESPD0016.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437935/PHESPD0016.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 90466659;91484212 ERS1193314 ERX1508313 GENOMIC 299577208 2016-06-10 PHESPD0016 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437935/PHESPD0016.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437935/PHESPD0016.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437935 PHESPD0016 ERR1437934 PHESPD0015 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437934 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437934 0e61f87286b8ae3a37dc4dd8ca041675;5e4c54566185213e60b0f5dd33fc52c4 1313 76648284 7d821973d953c3907af93ad297291cf3;9df2789d9d6f2d2f7977598dbc1871fc SAMEA4022203 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437934/ERR1437934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437934/ERR1437934_2.fastq.gz 939598 WGS PHESPD0015 RANDOM 52259504;52611756 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 7ecf18516e69620e9c96e33d0f5c1abe ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437934/ERR1437934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437934/ERR1437934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437934/PHESPD0015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437934/PHESPD0015.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437934/ERR1437934_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437934/ERR1437934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437934/PHESPD0015.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437934/PHESPD0015.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 55574716;55933928 ERS1193313 ERX1508312 GENOMIC 183070860 2016-06-10 PHESPD0015 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437934/PHESPD0015.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437934/PHESPD0015.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437934 PHESPD0015 ERR1437936 PHESPD0017 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437936 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437936 cd7fa702eb28f26aab125886fb5afc92;cd4e8981c607cad0efec705de7c23a37 1313 168589122 0b19b4bd68df9d4e2800ac4c3fd0261a;e18e07488425b66c2a23202373ecb346 SAMEA4022205 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437936/ERR1437936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437936/ERR1437936_2.fastq.gz 1992792 WGS PHESPD0017 RANDOM 113587321;115293641 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2f0d2a6c8dbb93ae43ed54a502db8a0b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437936/ERR1437936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437936/ERR1437936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437936/PHESPD0017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437936/PHESPD0017.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437936/ERR1437936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437936/ERR1437936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437936/PHESPD0017.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437936/PHESPD0017.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 120062522;121716222 ERS1193315 ERX1508314 GENOMIC 385979229 2016-06-10 PHESPD0017 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437936/PHESPD0017.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437936/PHESPD0017.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437936 PHESPD0017 ERR1437937 PHESPD0018 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437937 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437937 ed1f5aef953548b2447906b55514044e;f56c2d7a980a12fad9d78f32fba1723a 1313 30235606 013a41bd9f783f0518d281aa92f7b61c;2acf532de44e655c330d1644f77d6ff5 SAMEA4022206 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437937/ERR1437937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437937/ERR1437937_2.fastq.gz 420470 WGS PHESPD0018 RANDOM 20711146;21234331 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 369c26ed5d4b9603cbe8adabf3582594 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437937/ERR1437937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437937/ERR1437937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437937/PHESPD0018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437937/PHESPD0018.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437937/ERR1437937_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437937/ERR1437937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437937/PHESPD0018.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437937/PHESPD0018.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 22332087;22843217 ERS1193316 ERX1508315 GENOMIC 83345703 2016-06-10 PHESPD0018 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437937/PHESPD0018.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437937/PHESPD0018.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437937 PHESPD0018 ERR1437938 PHESPD0019 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437938 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437938 63cc75a229bd5200458d9970e8064b32;4f5a7b7085b3760e80612601033a5452 1313 146910893 c75b07b32c4968e5089ed9898e569876;f389c4fe6f81cb3ec16f2d1ecc77d418 SAMEA4022207 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437938/ERR1437938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437938/ERR1437938_2.fastq.gz 1721332 WGS PHESPD0019 RANDOM 98139965;100778367 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1e6dd1962d4b71a0f2ffd5481c520993 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437938/ERR1437938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437938/ERR1437938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437938/PHESPD0019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437938/PHESPD0019.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437938/ERR1437938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437938/ERR1437938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437938/PHESPD0019.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437938/PHESPD0019.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103843866;106377164 ERS1193317 ERX1508316 GENOMIC 332366863 2016-06-10 PHESPD0019 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437938/PHESPD0019.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437938/PHESPD0019.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437938 PHESPD0019 ERR1437941 PHESPD0022 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437941 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437941 eab2631933b93289cc00ef26f1cd9be5;42f21d252ea00b9b0c5f3c2dfb88dda3 1313 147027911 50c79d68be843baa893cf4c47fca38fe;19ba92246eb7764a6a01322ce13a3cac SAMEA4022210 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437941/ERR1437941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437941/ERR1437941_2.fastq.gz 1735098 WGS PHESPD0022 RANDOM 99032269;100653595 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1ab4516213ade89297f299f0a558202d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437941/ERR1437941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437941/ERR1437941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437941/PHESPD0022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437941/PHESPD0022.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437941/ERR1437941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437941/ERR1437941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437941/PHESPD0022.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437941/PHESPD0022.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104788119;106357620 ERS1193320 ERX1508319 GENOMIC 336021394 2016-06-10 PHESPD0022 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437941/PHESPD0022.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437941/PHESPD0022.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437941 PHESPD0022 ERR1437939 PHESPD0020 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437939 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437939 1ddf7b957ffcab0c18734cc30988b24f;568736f89f539d1a22a4e6a84f700a41 1313 88329989 3d806f4e27992cdb25024ac9a7961fc3;5664866a3965756d72b8f3875666c1b1 SAMEA4022208 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437939/ERR1437939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437939/ERR1437939_2.fastq.gz 1116880 WGS PHESPD0020 RANDOM 60796693;60872860 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f01488907df2ccf0999484ec5ac5ad60 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437939/ERR1437939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437939/ERR1437939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437939/PHESPD0020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437939/PHESPD0020.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437939/ERR1437939_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437939/ERR1437939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437939/PHESPD0020.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437939/PHESPD0020.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64687187;64777666 ERS1193318 ERX1508317 GENOMIC 219577124 2016-06-10 PHESPD0020 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437939/PHESPD0020.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437939/PHESPD0020.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437939 PHESPD0020 ERR1437940 PHESPD0021 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437940 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437940 500be16d06623a39f97e8eee035cbbf6;c2c25305cbdae3f30febed0ad2a967a1 1313 145554304 7fe1d4ae0ce5120d2484754759b96ca0;8026387e19c051de80331c93925ec14d SAMEA4022209 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437940/ERR1437940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437940/ERR1437940_2.fastq.gz 1712364 WGS PHESPD0021 RANDOM 98181992;99428852 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d254601dc1c5e671bf1cfeb13600edfb ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437940/ERR1437940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437940/ERR1437940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437940/PHESPD0021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437940/PHESPD0021.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437940/ERR1437940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437940/ERR1437940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437940/PHESPD0021.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437940/PHESPD0021.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 103858612;105043694 ERS1193319 ERX1508318 GENOMIC 331253371 2016-06-10 PHESPD0021 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437940/PHESPD0021.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437940/PHESPD0021.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437940 PHESPD0021 ERR1437942 PHESPD0023 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437942 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437942 8dd4404355186a9f8c3127c2e6c647b8;0ed20a5f2f472be820bd92592f0d21f3 1313 38803190 ec8c9fd8c2336c77cf4170c7d1a14dcf;d5a9aab2fbe8907876065251a2db529a SAMEA4022211 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437942/ERR1437942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437942/ERR1437942_2.fastq.gz 544993 WGS PHESPD0023 RANDOM 26761240;27437550 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 651db4efdde211963056518b204978cc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437942/ERR1437942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437942/ERR1437942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437942/PHESPD0023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437942/PHESPD0023.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437942/ERR1437942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437942/ERR1437942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437942/PHESPD0023.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437942/PHESPD0023.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 28805816;29465714 ERS1193321 ERX1508320 GENOMIC 108090005 2016-06-10 PHESPD0023 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437942/PHESPD0023.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437942/PHESPD0023.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437942 PHESPD0023 ERR1437943 PHESPD0024 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437943 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437943 d15876e8609bb329bfb393137a24ef0d;46402a4e9066ca9e38f2dfec7ee4ac1e 1313 54831399 be910b4a971504bbb6227d22e04161af;62b3d96cf4644bbfd15470ad63bb5ff5 SAMEA4022212 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437943/ERR1437943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437943/ERR1437943_2.fastq.gz 772136 WGS PHESPD0024 RANDOM 37889486;38738673 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5913c40955ca2374de599a78385b5a90 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437943/ERR1437943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437943/ERR1437943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437943/PHESPD0024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437943/PHESPD0024.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437943/ERR1437943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437943/ERR1437943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437943/PHESPD0024.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437943/PHESPD0024.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 40640611;41475456 ERS1193322 ERX1508321 GENOMIC 153162748 2016-06-10 PHESPD0024 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437943/PHESPD0024.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437943/PHESPD0024.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437943 PHESPD0024 ERR1437946 PHESPD0027 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437946 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437946 8b01d9df07af536b94a1b158125ab93f;9b24107542664e6ae336f0062e762f07 1313 29286535 8a12d5bb43b9d54d730ed8ae8f484edd;71373b5e9fefeb2225842b0e7aee4d30 SAMEA4022215 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437946/ERR1437946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437946/ERR1437946_2.fastq.gz 407783 WGS PHESPD0027 RANDOM 20028112;20750852 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5a9e634e99b11066ebec7dedeb549e2b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437946/ERR1437946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437946/ERR1437946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437946/PHESPD0027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437946/PHESPD0027.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437946/ERR1437946_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437946/ERR1437946_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437946/PHESPD0027.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437946/PHESPD0027.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 21623661;22333651 ERS1193325 ERX1508324 GENOMIC 80856673 2016-06-10 PHESPD0027 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437946/PHESPD0027.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437946/PHESPD0027.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437946 PHESPD0027 ERR1437945 PHESPD0026 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437945 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437945 dd76611ce91861deec60d75497823c2c;067dccbff1877d3822d8de74795c50d4 1313 171515516 06532cdebc46f6762ff01b29fe56e964;8396dfa5533dc73ea58950f22143490a SAMEA4022214 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437945/ERR1437945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437945/ERR1437945_2.fastq.gz 2027720 WGS PHESPD0026 RANDOM 115811253;117671468 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f23670dec149968e88edf44dc6cc13ec ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437945/ERR1437945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437945/ERR1437945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437945/PHESPD0026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437945/PHESPD0026.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437945/ERR1437945_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437945/ERR1437945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437945/PHESPD0026.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437945/PHESPD0026.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 122382644;124184454 ERS1193324 ERX1508323 GENOMIC 392979670 2016-06-10 PHESPD0026 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437945/PHESPD0026.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437945/PHESPD0026.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437945 PHESPD0026 ERR1437944 PHESPD0025 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437944 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437944 3387a339fec16327f2de6d12e43886aa;46cd4aea827ffdfcccd295e1db8dca7f 1313 157009003 75d48076f2358f5eccc39f1d4eb6e23f;4ce6f3ef5419e158d650fb63de8017fa SAMEA4022213 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437944/ERR1437944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437944/ERR1437944_2.fastq.gz 1623864 WGS PHESPD0025 RANDOM 103270291;106372511 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f3def840650e5da724026e03847f94db ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437944/ERR1437944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437944/ERR1437944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437944/PHESPD0025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437944/PHESPD0025.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437944/ERR1437944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437944/ERR1437944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437944/PHESPD0025.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437944/PHESPD0025.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108640013;111661905 ERS1193323 ERX1508322 GENOMIC 319668880 2016-06-10 PHESPD0025 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437944/PHESPD0025.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437944/PHESPD0025.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437944 PHESPD0025 ERR1437947 PHESPD0028 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437947 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437947 5f71d3a9bd236b154a58034f651b8271;55d4fecf938649e5645a610e7f14408d 1313 19222668 36d79327147daf19e8ab2803f3526b95;281f131eada3e6578c28c095de034a6b SAMEA4022216 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437947/ERR1437947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437947/ERR1437947_2.fastq.gz 263915 WGS PHESPD0028 RANDOM 13009111;13723326 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6570ea58a21d61bf030263f88846eaf ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437947/ERR1437947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437947/ERR1437947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437947/PHESPD0028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437947/PHESPD0028.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437947/ERR1437947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437947/ERR1437947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437947/PHESPD0028.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437947/PHESPD0028.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 14077789;14781408 ERS1193326 ERX1508325 GENOMIC 52290185 2016-06-10 PHESPD0028 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437947/PHESPD0028.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437947/PHESPD0028.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437947 PHESPD0028 ERR1437948 PHESPD0029 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437948 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437948 8c6875620c34e1c5ff685fbac8dff9ac;5c79c16d310cc4fb3838b5816a1079b0 1313 117418710 c2bd0a0a444d573d08752f98f3cc5eb4;5e0b15e541919e3c96ba913f2d36fafc SAMEA4022217 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437948/ERR1437948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437948/ERR1437948_2.fastq.gz 1367817 WGS PHESPD0029 RANDOM 78200846;81700340 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline fbeab46fcee9c2c50025742741fba814 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437948/ERR1437948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437948/ERR1437948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437948/PHESPD0029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437948/PHESPD0029.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437948/ERR1437948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437948/ERR1437948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437948/PHESPD0029.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437948/PHESPD0029.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 82827925;86193231 ERS1193327 ERX1508326 GENOMIC 271164205 2016-06-10 PHESPD0029 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437948/PHESPD0029.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437948/PHESPD0029.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437948 PHESPD0029 ERR1437949 PHESPD0030 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437949 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437949 a75ee3bd0a6adb1d9c5ca31eb29c36f6;a37d1ff1b14924100a5c47cbc78ca68c 1313 42607792 f36f496d2b61d2db3341c9c97a0527a7;dcd39262a97fadb53cadbed18164e105 SAMEA4022218 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437949/ERR1437949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437949/ERR1437949_2.fastq.gz 595603 WGS PHESPD0030 RANDOM 29186157;30041179 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ef51943c43de72c39b3d6cd771e6f72a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437949/ERR1437949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437949/ERR1437949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437949/PHESPD0030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437949/PHESPD0030.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437949/ERR1437949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437949/ERR1437949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437949/PHESPD0030.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437949/PHESPD0030.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 31381481;32216659 ERS1193328 ERX1508327 GENOMIC 118043387 2016-06-10 PHESPD0030 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437949/PHESPD0030.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437949/PHESPD0030.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437949 PHESPD0030 ERR1437950 PHESPD0031 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437950 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437950 ce580b5f31c2b30eaee4373110400dd5;bab927595018002ee389f0ac5075d3ed 1313 137074944 8a6e0d030e4cb19aa28088bc013458d1;7e127e1379306b41e7ddfea6f499dc75 SAMEA4022219 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437950/ERR1437950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437950/ERR1437950_2.fastq.gz 1606770 WGS PHESPD0031 RANDOM 92630041;92743213 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2a48e0c0528aebb79834e7ff504c5a2d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437950/ERR1437950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437950/ERR1437950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437950/PHESPD0031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437950/PHESPD0031.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437950/ERR1437950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437950/ERR1437950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437950/PHESPD0031.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437950/PHESPD0031.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97964448;98069178 ERS1193329 ERX1508328 GENOMIC 310660544 2016-06-10 PHESPD0031 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437950/PHESPD0031.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437950/PHESPD0031.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437950 PHESPD0031 ERR1437951 PHESPD0032 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437951 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437951 6fbc1efbc639a2398df1ba64098bce80;e65d340baf40fecb1855094ac8b39407 1313 154038370 1a6c21dccd6837048d6264e4f9b9768e;933311dd978434d08e89f115ba6bcbd7 SAMEA4022220 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437951/ERR1437951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437951/ERR1437951_2.fastq.gz 1656882 WGS PHESPD0032 RANDOM 100864755;104336915 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 06713c4c5ed356da90fa09fc5a20aeb4 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437951/ERR1437951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437951/ERR1437951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437951/PHESPD0032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437951/PHESPD0032.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437951/ERR1437951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437951/ERR1437951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437951/PHESPD0032.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437951/PHESPD0032.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 106264131;109620082 ERS1193330 ERX1508329 GENOMIC 326891649 2016-06-10 PHESPD0032 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437951/PHESPD0032.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437951/PHESPD0032.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437951 PHESPD0032 ERR1437952 PHESPD0033 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437952 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437952 a99a878aa9a576a7b2e6772c3936e543;6e00495e6a719b0825046eac3d581a4f 1313 94523750 dbcbad6070eba5ea9877e1743ba6bd82;c51dde49cfcb612ed61843a624b2d33f SAMEA4022221 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437952/ERR1437952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437952/ERR1437952_2.fastq.gz 1200825 WGS PHESPD0033 RANDOM 64544788;65949098 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5f31726b77eefc839c78597e17b8a842 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437952/ERR1437952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437952/ERR1437952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437952/PHESPD0033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437952/PHESPD0033.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437952/ERR1437952_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437952/ERR1437952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437952/PHESPD0033.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437952/PHESPD0033.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 68687149;70089899 ERS1193331 ERX1508330 GENOMIC 236415791 2016-06-10 PHESPD0033 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437952/PHESPD0033.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437952/PHESPD0033.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437952 PHESPD0033 ERR1437953 PHESPD0034 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437953 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437953 32c3c7786a1d8d66de8a3c14849e130a;2f2098eab0d273893c06abd75aec9d69 1313 160989504 b0a8688c4a8d1387c0a7f5e31fcc93a7;779e1f4e4f3c32e9ae6d6f9b0922c1d1 SAMEA4022222 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437953/ERR1437953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437953/ERR1437953_2.fastq.gz 1903072 WGS PHESPD0034 RANDOM 108694600;109976435 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 78286c0532e7f9a59ab5c3872b1991ab ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437953/ERR1437953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437953/ERR1437953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437953/PHESPD0034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437953/PHESPD0034.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437953/ERR1437953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437953/ERR1437953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437953/PHESPD0034.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437953/PHESPD0034.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 114918480;116168507 ERS1193332 ERX1508331 GENOMIC 368665170 2016-06-10 PHESPD0034 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437953/PHESPD0034.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437953/PHESPD0034.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437953 PHESPD0034 ERR1437954 PHESPD0035 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437954 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437954 3e4c3c3bdf25eebbe2d87143a8159802;f1c6fd8785559dc917b2cb209b51f47f 1313 143351870 d16eb0e44b4a899e4ae0820aa00cb9ea;b3da6fc24ca781903dd3ca165b3bc3aa SAMEA4022223 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437954/ERR1437954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437954/ERR1437954_2.fastq.gz 1693725 WGS PHESPD0035 RANDOM 96888099;97975640 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3bb6c5cc63a90642aee78a6392718615 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437954/ERR1437954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437954/ERR1437954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437954/PHESPD0035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437954/PHESPD0035.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437954/ERR1437954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437954/ERR1437954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437954/PHESPD0035.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437954/PHESPD0035.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102476514;103532795 ERS1193333 ERX1508332 GENOMIC 328072897 2016-06-10 PHESPD0035 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437954/PHESPD0035.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437954/PHESPD0035.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437954 PHESPD0035 ERR1437955 PHESPD0036 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437955 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437955 66a6ba379d1d83b5e11e16f2ca6d984e;bab68227b93b7af98de3eb1c12b4602a 1313 103730170 4f4e5d70ac5bf745a5ff7ef5613a3083;b2259fccaf0bcd07b353d3c44635c4c5 SAMEA4022224 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437955/ERR1437955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437955/ERR1437955_2.fastq.gz 1226098 WGS PHESPD0036 RANDOM 70155850;70997065 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b16bb1c950b41e633d1bd2bd74e7f3b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437955/ERR1437955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437955/ERR1437955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437955/PHESPD0036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437955/PHESPD0036.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437955/ERR1437955_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437955/ERR1437955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437955/PHESPD0036.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437955/PHESPD0036.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74405635;75214935 ERS1193334 ERX1508333 GENOMIC 237597010 2016-06-10 PHESPD0036 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437955/PHESPD0036.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437955/PHESPD0036.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437955 PHESPD0036 ERR1437956 PHESPD0037 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437956 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437956 a1a157e001144c5fb5aaf14f0534c84f;d6ee4a59e2ed920a580deb7fae37afeb 1313 96519001 e26dfab9c8205d23d1257ce6e9e60550;b80f7119e5d9e835842631b638b21956 SAMEA4022225 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437956/ERR1437956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437956/ERR1437956_2.fastq.gz 1242462 WGS PHESPD0037 RANDOM 65501211;67706295 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 17df10df26958f26b9f3749b42d4b935 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437956/ERR1437956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437956/ERR1437956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437956/PHESPD0037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437956/PHESPD0037.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437956/ERR1437956_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437956/ERR1437956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437956/PHESPD0037.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437956/PHESPD0037.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 69703183;71941858 ERS1193335 ERX1508334 GENOMIC 244448628 2016-06-10 PHESPD0037 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437956/PHESPD0037.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437956/PHESPD0037.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437956 PHESPD0037 ERR1437957 PHESPD0038 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437957 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437957 ff8953edd1019225e2318f6a112ffabf;4bc1127a247726727072427cce0a56fd 1313 49951681 745c908bfdcdc822c7d7efdd2e3d42e1;48f9aedff77aaa61e48d2d5d15341369 SAMEA4022226 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437957/ERR1437957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437957/ERR1437957_2.fastq.gz 632392 WGS PHESPD0038 RANDOM 33507636;35318055 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 917718dfe55d3e53e3199ed733ca897b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437957/ERR1437957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437957/ERR1437957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437957/PHESPD0038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437957/PHESPD0038.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437957/ERR1437957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437957/ERR1437957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437957/PHESPD0038.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437957/PHESPD0038.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 35805374;37609144 ERS1193336 ERX1508335 GENOMIC 124166517 2016-06-10 PHESPD0038 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437957/PHESPD0038.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437957/PHESPD0038.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437957 PHESPD0038 ERR1437958 PHESPD0039 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437958 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437958 512696c0311d9d087180481b4e81a734;5437eee575109055b9747abc6f54ce69 1313 119334009 032ed14a23285ab4445b9971b7d39b53;fb062636cfd0f601134aff991ad35faf SAMEA4022227 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437958/ERR1437958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437958/ERR1437958_2.fastq.gz 1399092 WGS PHESPD0039 RANDOM 79927025;81689257 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ea7c717c3b3902a113193342aa26d304 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437958/ERR1437958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437958/ERR1437958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437958/PHESPD0039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437958/PHESPD0039.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437958/ERR1437958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437958/ERR1437958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437958/PHESPD0039.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437958/PHESPD0039.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84622907;86310962 ERS1193337 ERX1508336 GENOMIC 270230745 2016-06-10 PHESPD0039 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437958/PHESPD0039.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437958/PHESPD0039.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437958 PHESPD0039 ERR1437959 PHESPD0040 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437959 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437959 bc61ff4800936be4e14a8aeab2da5ed4;bb2e0940d7bb042bfffef6ae8e744b92 1313 62728228 426f647c8bfa4610c96df5ac77dbf2a8;b46908298213b1f56362e977cf9b3af0 SAMEA4022228 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437959/ERR1437959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437959/ERR1437959_2.fastq.gz 802622 WGS PHESPD0040 RANDOM 42598377;44243656 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cddbf02a141b5d0acbc6366483a63e96 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437959/ERR1437959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437959/ERR1437959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437959/PHESPD0040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437959/PHESPD0040.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437959/ERR1437959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437959/ERR1437959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437959/PHESPD0040.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437959/PHESPD0040.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 45468979;47123358 ERS1193338 ERX1508337 GENOMIC 157833184 2016-06-10 PHESPD0040 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437959/PHESPD0040.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437959/PHESPD0040.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437959 PHESPD0040 ERR1437961 PHESPD0042 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437961 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437961 cf37303beedbb61469957b64089aa4e6;14d3f6a1330fab90ea1a66343290c875 1313 135912641 5f471fd247c84126717e16e20166f57d;386d1c6da11afaa8989f1c39bda346d2 SAMEA4022230 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437961/ERR1437961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437961/ERR1437961_2.fastq.gz 1594162 WGS PHESPD0042 RANDOM 91663416;92864463 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9c124e6f80612486ac5105a79557af9a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437961/ERR1437961_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437961/ERR1437961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437961/PHESPD0042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437961/PHESPD0042.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437961/ERR1437961_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437961/ERR1437961_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437961/PHESPD0042.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437961/PHESPD0042.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96979455;98132394 ERS1193340 ERX1508339 GENOMIC 308284140 2016-06-10 PHESPD0042 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437961/PHESPD0042.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437961/PHESPD0042.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437961 PHESPD0042 ERR1437960 PHESPD0041 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437960 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437960 d90d5d88e4896e6c6aba313a813d4648;e3c57f9e67bf510bd72cc2dfa6d208bf 1313 173160749 f40ddf7937427bb27f2f96ddbd4628b4;fc51fc10a16140d283722c0396ea88d2 SAMEA4022229 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437960/ERR1437960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437960/ERR1437960_2.fastq.gz 2132786 WGS PHESPD0041 RANDOM 118277879;119045202 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c14e5e95dead2142b0ff87481eff8ab6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437960/ERR1437960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437960/ERR1437960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437960/PHESPD0041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437960/PHESPD0041.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437960/ERR1437960_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437960/ERR1437960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437960/PHESPD0041.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437960/PHESPD0041.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 125043656;125823634 ERS1193339 ERX1508338 GENOMIC 415784697 2016-06-10 PHESPD0041 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437960/PHESPD0041.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437960/PHESPD0041.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437960 PHESPD0041 ERR1437963 PHESPD0044 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437963 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437963 641532079420f84f58469c91a75a2586;3213239b2a28a6ea14abc6ff0c22356b 1313 174709214 e2daf117bac94ac9c52f2be8f052078e;372e0fa04a45816743298707098557c5 SAMEA4022232 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437963/ERR1437963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437963/ERR1437963_2.fastq.gz 2150741 WGS PHESPD0044 RANDOM 119361408;120332334 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 731e93a1554ff6d4d81297d7a39b68ea ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437963/ERR1437963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437963/ERR1437963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437963/PHESPD0044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437963/PHESPD0044.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437963/ERR1437963_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437963/ERR1437963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437963/PHESPD0044.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437963/PHESPD0044.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 126169237;127153813 ERS1193342 ERX1508341 GENOMIC 419550259 2016-06-10 PHESPD0044 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437963/PHESPD0044.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437963/PHESPD0044.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437963 PHESPD0044 ERR1437962 PHESPD0043 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437962 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437962 72eba54d3cf948b4dddaf03e41d1c8e2;ec857e4c95e0ee9073975b279787b7e5 1313 87312358 ab9c321a7c0d6864e35b37ca1749d281;4cec1c7de8b4746b6ac724141ec761e5 SAMEA4022231 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437962/ERR1437962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437962/ERR1437962_2.fastq.gz 1063382 WGS PHESPD0043 RANDOM 59692112;60064254 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cd762fc5f62669388f2c61f9942a083d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437962/ERR1437962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437962/ERR1437962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437962/PHESPD0043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437962/PHESPD0043.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437962/ERR1437962_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437962/ERR1437962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437962/PHESPD0043.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437962/PHESPD0043.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 63376240;63746560 ERS1193341 ERX1508340 GENOMIC 207095497 2016-06-10 PHESPD0043 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437962/PHESPD0043.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437962/PHESPD0043.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437962 PHESPD0043 ERR1437964 PHESPD0045 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437964 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437964 620d7b1e05d96ad348b07bab503406c6;86f2ce491125a4e3e9fcca9153bccb06 1313 160851511 f6faa9875e9d0b83c66af9d6e8cd924a;29bee004c59a0394fb3b1be6a81acc36 SAMEA4022233 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437964/ERR1437964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437964/ERR1437964_2.fastq.gz 1978332 WGS PHESPD0045 RANDOM 109857935;111012377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 83914e825e773f7a662d2c83e7ce0b08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437964/ERR1437964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437964/ERR1437964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437964/PHESPD0045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437964/PHESPD0045.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437964/ERR1437964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437964/ERR1437964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437964/PHESPD0045.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437964/PHESPD0045.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116235153;117392020 ERS1193343 ERX1508342 GENOMIC 385736704 2016-06-10 PHESPD0045 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437964/PHESPD0045.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437964/PHESPD0045.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437964 PHESPD0045 ERR1437966 PHESPD0047 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437966 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437966 8b05600e7ad8bdbc1557eb119cac8969;88eafc38c2cb5db02ab748e23367171c 1313 18406891 473401320500ecd5f08f49c0ae069e26;c713db7c2238f84f65ae641630ebd57e SAMEA4022235 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437966/ERR1437966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437966/ERR1437966_2.fastq.gz 230010 WGS PHESPD0047 RANDOM 12338792;12821639 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5410591e17bc00c1e5f218ab999122c2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437966/ERR1437966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437966/ERR1437966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437966/PHESPD0047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437966/PHESPD0047.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437966/ERR1437966_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437966/ERR1437966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437966/PHESPD0047.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437966/PHESPD0047.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 13277398;13759263 ERS1193345 ERX1508344 GENOMIC 44981739 2016-06-10 PHESPD0047 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437966/PHESPD0047.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437966/PHESPD0047.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437966 PHESPD0047 ERR1437965 PHESPD0046 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437965 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437965 14835ebb25f3f1168ebfdf1fc741ddc8;f07d4ef3292f5b591d5b3b8be5d08c3d 1313 75395733 28429b8d51324a858ad41678a4644ffc;0a954c95c629af67ba83bee1cb1aa989 SAMEA4022234 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437965/ERR1437965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437965/ERR1437965_2.fastq.gz 913104 WGS PHESPD0046 RANDOM 50939075;52375865 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ce1565212d9c0d941c0267a963a89624 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437965/ERR1437965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437965/ERR1437965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437965/PHESPD0046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437965/PHESPD0046.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437965/ERR1437965_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437965/ERR1437965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437965/PHESPD0046.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437965/PHESPD0046.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54182606;55582787 ERS1193344 ERX1508343 GENOMIC 177253737 2016-06-10 PHESPD0046 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437965/PHESPD0046.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437965/PHESPD0046.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437965 PHESPD0046 ERR1437967 PHESPD0048 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437967 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437967 f61d6317c78c8a9e9c97b6061be6a3e5;f4d69729d582542108f1e2c4252010c3 1313 175915029 5074316549d3bde44ca6ee3430b3d520;47ab17823518f260ae2485c8e9dba06b SAMEA4022236 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437967/ERR1437967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437967/ERR1437967_2.fastq.gz 1825049 WGS PHESPD0048 RANDOM 115525822;119408087 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f3d06ca81ed9e67f721853c7c0195227 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437967/ERR1437967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437967/ERR1437967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437967/PHESPD0048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437967/PHESPD0048.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437967/ERR1437967_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437967/ERR1437967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437967/PHESPD0048.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437967/PHESPD0048.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121491702;125297852 ERS1193346 ERX1508345 GENOMIC 359304188 2016-06-10 PHESPD0048 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437967/PHESPD0048.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437967/PHESPD0048.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437967 PHESPD0048 ERR1437968 PHESPD0049 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437968 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437968 a2fa524f0dabb9bb27c19217a3860862;fb26fb463dd0956bd3dcb7b816750553 1313 134997631 776e08c49c7335492bbbd7b6e474098c;b74fcc1995ce1f27bf9fed5cf1527f24 SAMEA4022237 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437968/ERR1437968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437968/ERR1437968_2.fastq.gz 1659851 WGS PHESPD0049 RANDOM 92186330;93035211 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 858ca0cb2c43ef8ec6edd116546a5a8c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437968/ERR1437968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437968/ERR1437968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437968/PHESPD0049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437968/PHESPD0049.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437968/ERR1437968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437968/ERR1437968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437968/PHESPD0049.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437968/PHESPD0049.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 97656025;98510605 ERS1193347 ERX1508346 GENOMIC 323576380 2016-06-10 PHESPD0049 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437968/PHESPD0049.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437968/PHESPD0049.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437968 PHESPD0049 ERR1437969 PHESPD0050 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437969 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437969 5b363c6e077afbbab14ab3c5bb3e52ed;3d9ae763423483bd2c50b982ed918d2e 1313 162354998 5921ec6860ce9b3d266b256c83526ed0;536ccc750cbad53de7fa694229918b64 SAMEA4022238 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437969/ERR1437969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437969/ERR1437969_2.fastq.gz 1991354 WGS PHESPD0050 RANDOM 110858911;111986747 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 112246fe34848285570eeb0fbcdd1bf2 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437969/ERR1437969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437969/ERR1437969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437969/PHESPD0050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437969/PHESPD0050.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437969/ERR1437969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437969/ERR1437969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437969/PHESPD0050.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437969/PHESPD0050.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 117256301;118381613 ERS1193348 ERX1508347 GENOMIC 388248240 2016-06-10 PHESPD0050 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437969/PHESPD0050.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437969/PHESPD0050.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437969 PHESPD0050 ERR1437970 PHESPD0051 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437970 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437970 31c2956cb39f761f0933b76a30032cb9;6b30e2f92f9e7cd297255b1587c75e95 1313 22996697 1ea983c70ad2252ee32bb2b6a3bb3532;dfda5e1ec577e1321abbffe26b3ef3ac SAMEA4022239 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437970/ERR1437970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437970/ERR1437970_2.fastq.gz 287966 WGS PHESPD0051 RANDOM 15474672;16103017 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cfe2df107f4b4684e1e20b26df4e6440 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437970/ERR1437970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437970/ERR1437970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437970/PHESPD0051.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437970/PHESPD0051.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437970/ERR1437970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437970/ERR1437970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437970/PHESPD0051.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437970/PHESPD0051.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 16633471;17265249 ERS1193349 ERX1508348 GENOMIC 56339590 2016-06-10 PHESPD0051 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437970/PHESPD0051.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437970/PHESPD0051.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437970 PHESPD0051 ERR1437971 PHESPD0052 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437971 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437971 0c346050e2f90a55a5a7f1e529690744;a5f5f09c401db5bbab64999ab2647923 1313 163135539 082d5f902761a16ab336881be0d2e1ea;5899e4a03f6514878122ac0b1f30e4bc SAMEA4022240 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437971/ERR1437971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437971/ERR1437971_2.fastq.gz 1930317 WGS PHESPD0052 RANDOM 110382872;111511731 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1b3139c5c3bcf4c3eb1ce19fd6f7ab88 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437971/ERR1437971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437971/ERR1437971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437971/PHESPD0052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437971/PHESPD0052.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437971/ERR1437971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437971/ERR1437971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437971/PHESPD0052.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437971/PHESPD0052.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 116655194;117754964 ERS1193350 ERX1508349 GENOMIC 374182224 2016-06-10 PHESPD0052 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437971/PHESPD0052.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437971/PHESPD0052.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437971 PHESPD0052 ERR1437972 PHESPD0053 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437972 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437972 b772cfa24810f5c48c3e333472b3a877;ddee6580f218fd07f3050b9264681524 1313 42324685 ca7baeeadfe4afcba984fd114606c289;5ae8f74cae43598f9f4b65fbac7b119f SAMEA4022241 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437972/ERR1437972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437972/ERR1437972_2.fastq.gz 530617 WGS PHESPD0053 RANDOM 28478597;29692179 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 20c974f2e3d16a913252e57ea119bb32 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437972/ERR1437972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437972/ERR1437972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437972/PHESPD0053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437972/PHESPD0053.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437972/ERR1437972_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437972/ERR1437972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437972/PHESPD0053.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437972/PHESPD0053.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 30485912;31703498 ERS1193351 ERX1508350 GENOMIC 103807423 2016-06-10 PHESPD0053 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437972/PHESPD0053.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437972/PHESPD0053.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437972 PHESPD0053 ERR1437973 PHESPD0054 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437973 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437973 63cc733f8b3de2b9d9cb849e1f060bab;f2dc731d1eebee1d7ee3f96cc764e0a2 1313 62434522 cf008cafeb5c7a68754bd343947ab375;177fa8d7ce0b15353e4d7f78f2ad4662 SAMEA4022242 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437973/ERR1437973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437973/ERR1437973_2.fastq.gz 767378 WGS PHESPD0054 RANDOM 42693004;42999710 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 11d5ae9ad6fca0e3bc2dc9c40bd9da85 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437973/ERR1437973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437973/ERR1437973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437973/PHESPD0054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437973/PHESPD0054.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437973/ERR1437973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437973/ERR1437973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437973/PHESPD0054.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437973/PHESPD0054.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 45455005;45744429 ERS1193352 ERX1508351 GENOMIC 150213256 2016-06-10 PHESPD0054 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437973/PHESPD0054.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437973/PHESPD0054.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437973 PHESPD0054 ERR1437974 PHESPD0055 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437974 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437974 be260f6ae53bcd72c768bedcc4a20d00;2e881d68616e3881c0b8c046125e8e21 1313 36006490 f4d56aca3b755c67fe490e08281f4869;1e8670d8f2c97b24e0f03c65c88e2659 SAMEA4022243 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437974/ERR1437974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437974/ERR1437974_2.fastq.gz 452168 WGS PHESPD0055 RANDOM 24345527;24827675 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f6f56ca302d76aab51b8f9cf1edc7d5a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437974/ERR1437974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437974/ERR1437974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437974/PHESPD0055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437974/PHESPD0055.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437974/ERR1437974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437974/ERR1437974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437974/PHESPD0055.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437974/PHESPD0055.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 26076455;26567528 ERS1193353 ERX1508352 GENOMIC 88513845 2016-06-10 PHESPD0055 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437974/PHESPD0055.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437974/PHESPD0055.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437974 PHESPD0055 ERR1437975 PHESPD0056 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437975 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437975 a580e50e7c60154732a0ec279d1d9553;757baf6aba78c7f8773afe8f42fdcb45 1313 120340043 36ab8eb3971d9222d957f02449109efe;93f0b6e54dbad42da959b2f737993cbf SAMEA4022244 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437975/ERR1437975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437975/ERR1437975_2.fastq.gz 1527325 WGS PHESPD0056 RANDOM 81965277;83430131 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9138759fb92a387ece7d48b7c83e6f28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437975/ERR1437975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437975/ERR1437975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437975/PHESPD0056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437975/PHESPD0056.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437975/ERR1437975_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437975/ERR1437975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437975/PHESPD0056.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437975/PHESPD0056.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 86989539;88503916 ERS1193354 ERX1508353 GENOMIC 299415931 2016-06-10 PHESPD0056 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437975/PHESPD0056.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437975/PHESPD0056.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437975 PHESPD0056 ERR1437976 PHESPD0057 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437976 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437976 0925b496d97ddf6a92383001456e7913;4bd905885871cd4496c93c3664bdcf76 1313 39308206 59d117c16c2d0a413d06ad6ea4c1939c;ba93174207474c6bad6e382a79b5e110 SAMEA4022245 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437976/ERR1437976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437976/ERR1437976_2.fastq.gz 446588 WGS PHESPD0057 RANDOM 26219769;26827962 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 72d548c45f0046513568d0a8e9b878da ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437976/ERR1437976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437976/ERR1437976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437976/PHESPD0057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437976/PHESPD0057.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437976/ERR1437976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437976/ERR1437976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437976/PHESPD0057.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437976/PHESPD0057.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 27915558;28490854 ERS1193355 ERX1508354 GENOMIC 88450601 2016-06-10 PHESPD0057 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437976/PHESPD0057.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437976/PHESPD0057.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437976 PHESPD0057 ERR1437978 PHESPD0059 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437978 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437978 8e11265d0280b1af553e789174b012ac;fdaabb46d45f2f2f2e39f74d8d4d27ea 1313 73443716 3dce308c88dacda9a33ab4a278eb6888;9578f69c258f13a1900a29d48b96a5c8 SAMEA4022247 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437978/ERR1437978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437978/ERR1437978_2.fastq.gz 862905 WGS PHESPD0059 RANDOM 49209913;50736052 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 371fd36ef35ec5f827fb981802062ac9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437978/ERR1437978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437978/ERR1437978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437978/PHESPD0059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437978/PHESPD0059.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437978/ERR1437978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437978/ERR1437978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437978/PHESPD0059.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437978/PHESPD0059.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 52248837;53763051 ERS1193357 ERX1508356 GENOMIC 171205179 2016-06-10 PHESPD0059 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437978/PHESPD0059.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437978/PHESPD0059.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437978 PHESPD0059 ERR1437977 PHESPD0058 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437977 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437977 4a8707f6379c40b576ab6b6961224b34;f5c02b98ddae158eb662e5a5bce5378e 1313 83350655 d16234e2a8640ad704094834574e3dbf;b2b4043c33bb88a94a0d9cfc5323cc62 SAMEA4022246 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437977/ERR1437977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437977/ERR1437977_2.fastq.gz 1044387 WGS PHESPD0058 RANDOM 55805093;57863911 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 1665d2a2a17c068b25858728c46c7706 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437977/ERR1437977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437977/ERR1437977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437977/PHESPD0058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437977/PHESPD0058.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437977/ERR1437977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437977/ERR1437977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437977/PHESPD0058.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437977/PHESPD0058.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 59406931;61476460 ERS1193356 ERX1508355 GENOMIC 204295777 2016-06-10 PHESPD0058 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437977/PHESPD0058.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437977/PHESPD0058.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437977 PHESPD0058 ERR1437979 PHESPD0060 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437979 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437979 43642fb875e7cdb5d9d392a7a66b5db5;144c2c87cfa36365a738cf33d2e04484 1313 157393938 ee60459faf836274395143e9da0d1090;5108cff7447c65943d5a4e4263b938c8 SAMEA4022248 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437979/ERR1437979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437979/ERR1437979_2.fastq.gz 1860094 WGS PHESPD0060 RANDOM 106413032;107704194 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9429b8801e10fc49ea1701a801fdd9d9 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437979/ERR1437979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437979/ERR1437979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437979/PHESPD0060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437979/PHESPD0060.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437979/ERR1437979_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437979/ERR1437979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437979/PHESPD0060.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437979/PHESPD0060.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 112521372;113779660 ERS1193358 ERX1508357 GENOMIC 360498249 2016-06-10 PHESPD0060 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437979/PHESPD0060.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437979/PHESPD0060.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437979 PHESPD0060 ERR1437980 PHESPD0061 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437980 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437980 88103498582cc2e63e3aeec90f198709;c036047ea9d8855e65f8dcb60c068db5 1313 86868120 31aafc62af32c3a98dff0fc9a6b7bc10;b6edd6e5ef0bc10d66cf571ff462d61a SAMEA4022249 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437980/ERR1437980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437980/ERR1437980_2.fastq.gz 1016392 WGS PHESPD0061 RANDOM 57960021;59455202 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e03922e7d5e860f97d1855bf64aca322 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437980/ERR1437980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437980/ERR1437980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437980/PHESPD0061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437980/PHESPD0061.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437980/ERR1437980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437980/ERR1437980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437980/PHESPD0061.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437980/PHESPD0061.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 61397643;62909903 ERS1193359 ERX1508358 GENOMIC 196660740 2016-06-10 PHESPD0061 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437980/PHESPD0061.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437980/PHESPD0061.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437980 PHESPD0061 ERR1437981 PHESPD0062 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437981 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437981 8b324adde44ad3c59d21a926984103af;25ea02e7cd2eb1ecf34f320d686c6277 1313 35254252 d7083aa43272fd7bb3e20c672f5b19d4;3c34444ac2d2ff679cae24ad1839904c SAMEA4022250 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437981/ERR1437981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437981/ERR1437981_2.fastq.gz 434002 WGS PHESPD0062 RANDOM 23950544;23983911 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 8321a858181d8b1ddeac8956cd954103 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437981/ERR1437981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437981/ERR1437981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437981/PHESPD0062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437981/PHESPD0062.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437981/ERR1437981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437981/ERR1437981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437981/PHESPD0062.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437981/PHESPD0062.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 25613290;25639924 ERS1193360 ERX1508359 GENOMIC 84869695 2016-06-10 PHESPD0062 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437981/PHESPD0062.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437981/PHESPD0062.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437981 PHESPD0062 ERR1437984 PHESPD0065 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437984 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437984 766f59722d5b30597b4d470705e03693;b38ef36fcb5461de8d291fda46d59eef 1313 117303052 17e7e45b1828cefdc73ca5a66dafd997;5a2eb6412ab27408b0adda3b6e641811 SAMEA4022253 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437984/ERR1437984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437984/ERR1437984_2.fastq.gz 1437641 WGS PHESPD0065 RANDOM 80126303;81051087 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab700a074b706bd2510864ce0301fce1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437984/ERR1437984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437984/ERR1437984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437984/PHESPD0065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437984/PHESPD0065.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437984/ERR1437984_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437984/ERR1437984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437984/PHESPD0065.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437984/PHESPD0065.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 84936987;85858501 ERS1193363 ERX1508362 GENOMIC 280272441 2016-06-10 PHESPD0065 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437984/PHESPD0065.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437984/PHESPD0065.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437984 PHESPD0065 ERR1437983 PHESPD0064 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437983 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437983 7f43ead32f21cb4cc13acaa17b59eee6;e30c5366e49445e9b7db3ee902eeb5b9 1313 61041254 fa12e1b7ad8604f4f71bf2302a2a2b05;414cf832eaa3d3559dbbba6323b449dd SAMEA4022252 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437983/ERR1437983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437983/ERR1437983_2.fastq.gz 731467 WGS PHESPD0064 RANDOM 41164770;42237429 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 12da2449e5a64a63284d19e6a32f97ad ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437983/ERR1437983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437983/ERR1437983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437983/PHESPD0064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437983/PHESPD0064.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437983/ERR1437983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437983/ERR1437983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437983/PHESPD0064.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437983/PHESPD0064.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 43834778;44890255 ERS1193362 ERX1508361 GENOMIC 142026562 2016-06-10 PHESPD0064 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437983/PHESPD0064.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437983/PHESPD0064.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437983 PHESPD0064 ERR1437986 PHESPD0067 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437986 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437986 0ee40052175e5966e36a5dbc69385743;623862e46a30ac522b24afa3c079ee48 1313 131848951 d4d896c09f01004669e0886d9fcb1eac;0b9a7242a15097bdef10c26c97470f8c SAMEA4022255 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437986/ERR1437986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437986/ERR1437986_2.fastq.gz 1604190 WGS PHESPD0067 RANDOM 89252230;91670050 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 07371d06efd3e3ba1a71899417157f4c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437986/ERR1437986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437986/ERR1437986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437986/PHESPD0067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437986/PHESPD0067.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437986/ERR1437986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437986/ERR1437986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437986/PHESPD0067.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437986/PHESPD0067.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94575411;96979836 ERS1193365 ERX1508364 GENOMIC 312356419 2016-06-10 PHESPD0067 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437986/PHESPD0067.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437986/PHESPD0067.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437986 PHESPD0067 ERR1437982 PHESPD0063 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437982 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437982 f7655ef7d35665ec95d90b2438aaf8dc;e8514fd96c7b7a709f4b7ce3dbc11a22 1313 59319027 a9fb7a832b4a97d86114e36cf3796d1c;dde1b08855a771c6c17e9734e355677a SAMEA4022251 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437982/ERR1437982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437982/ERR1437982_2.fastq.gz 729956 WGS PHESPD0063 RANDOM 40135884;40179867 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0a5757cb203a2b1accbc44c06ba1b24a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437982/ERR1437982_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437982/ERR1437982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437982/PHESPD0063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437982/PHESPD0063.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437982/ERR1437982_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437982/ERR1437982_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437982/PHESPD0063.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437982/PHESPD0063.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 42737744;42765880 ERS1193361 ERX1508360 GENOMIC 142707997 2016-06-10 PHESPD0063 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437982/PHESPD0063.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437982/PHESPD0063.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437982 PHESPD0063 ERR1437985 PHESPD0066 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437985 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437985 0f00b29956ea137d127c58be9c8627a7;76cc93f29caa872fbb16b5f353c74ff8 1313 114911109 8b9aeb405a3116906c930100e56b6c66;b43bc5d4fb87931cf45fa267288bad74 SAMEA4022254 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437985/ERR1437985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437985/ERR1437985_2.fastq.gz 1403459 WGS PHESPD0066 RANDOM 78508268;78797262 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d1a3a4e1bc549255d0590e24ad327b71 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437985/ERR1437985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437985/ERR1437985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437985/PHESPD0066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437985/PHESPD0066.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437985/ERR1437985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437985/ERR1437985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437985/PHESPD0066.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437985/PHESPD0066.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83219231;83515747 ERS1193364 ERX1508363 GENOMIC 273513876 2016-06-10 PHESPD0066 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437985/PHESPD0066.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437985/PHESPD0066.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437985 PHESPD0066 ERR1437988 PHESPD0069 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437988 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437988 f009eb74cb8a4c91530475b442536030;e7c0a1e26da604b1e7437516a6ecc7ff 1313 70169058 2652aa23eb9e012ef386be7f5079fe61;0762e4562d89fedfdd596c5cb4f466ff SAMEA4022257 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437988/ERR1437988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437988/ERR1437988_2.fastq.gz 862506 WGS PHESPD0069 RANDOM 47956554;48372032 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5e12911be53de638bfe0df4352cc9187 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437988/ERR1437988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437988/ERR1437988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437988/PHESPD0069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437988/PHESPD0069.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437988/ERR1437988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437988/ERR1437988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437988/PHESPD0069.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437988/PHESPD0069.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 51043155;51455099 ERS1193367 ERX1508366 GENOMIC 168247581 2016-06-10 PHESPD0069 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437988/PHESPD0069.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437988/PHESPD0069.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437988 PHESPD0069 ERR1437987 PHESPD0068 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437987 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437987 950522440f9058c6601ba9f9478a5621;d88544077b94f922272a21cce1ca6240 1313 111742101 71c3c8a80f6340acd789b9f0622d7919;d56af15d4d781db0b61d7c97c4bf34df SAMEA4022256 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437987/ERR1437987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437987/ERR1437987_2.fastq.gz 1375645 WGS PHESPD0068 RANDOM 76202113;77344118 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3b729dd4fbd67ca131f205e9aaae5383 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437987/ERR1437987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437987/ERR1437987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437987/PHESPD0068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437987/PHESPD0068.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437987/ERR1437987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437987/ERR1437987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437987/PHESPD0068.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437987/PHESPD0068.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 80830799;81970062 ERS1193366 ERX1508365 GENOMIC 268548806 2016-06-10 PHESPD0068 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437987/PHESPD0068.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437987/PHESPD0068.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437987 PHESPD0068 ERR1437989 PHESPD0070 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437989 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437989 db47530ca990c4c53a76f4d314b7f015;54937f6718c799bb64c363ca050d5995 1313 136496324 7f074cbb80284fc393b2f5677c08a006;8141526c68f8f9ab31f140fa1be3a989 SAMEA4022258 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437989/ERR1437989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437989/ERR1437989_2.fastq.gz 1601036 WGS PHESPD0070 RANDOM 91500324;93633877 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9419479a09f13df11f39b17432c25fc3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437989/ERR1437989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437989/ERR1437989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437989/PHESPD0070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437989/PHESPD0070.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437989/ERR1437989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437989/ERR1437989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437989/PHESPD0070.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437989/PHESPD0070.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96835772;98881206 ERS1193368 ERX1508367 GENOMIC 309458415 2016-06-10 PHESPD0070 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437989/PHESPD0070.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437989/PHESPD0070.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437989 PHESPD0070 ERR1437990 PHESPD0071 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1437990 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437990 34d406181d79936840a6889aa4f4ae04;cdb7ecd6172d7af13313c11721e99d3c 1313 32463294 b239e0f10983b4dc984954dd534e0749;a0d966cdd8125308f4222e14f0d0f418 SAMEA4022259 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437990/ERR1437990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437990/ERR1437990_2.fastq.gz 382128 WGS PHESPD0071 RANDOM 21689645;22228839 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline e90bff28ddd97534b064c9bbc29e6893 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437990/ERR1437990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1437990/ERR1437990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437990/PHESPD0071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437990/PHESPD0071.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437990/ERR1437990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1437990/ERR1437990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437990/PHESPD0071.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437990/PHESPD0071.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 23150076;23685809 ERS1193369 ERX1508368 GENOMIC 73965641 2016-06-10 PHESPD0071 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437990/PHESPD0071.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437990/PHESPD0071.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1437990 PHESPD0071 ERR1437991 PHESPD0072 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1437991 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437991 bf768a8f0a758045b586c61df4fde5e7;9e2d9b4fee0ac7c59d0fb9ebf167c246 1313 100416696 9a7bb79969927cc3c2cbf6ed2e1396f8;b91bd503c4d7e2a0da2fc3794f398dbb SAMEA4022260 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437991/ERR1437991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437991/ERR1437991_2.fastq.gz 1257527 WGS PHESPD0072 RANDOM 68427145;69488370 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9ba63f6c891b648cc98a0b663c5c70ff ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437991/ERR1437991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1437991/ERR1437991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437991/PHESPD0072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437991/PHESPD0072.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437991/ERR1437991_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1437991/ERR1437991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437991/PHESPD0072.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437991/PHESPD0072.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72677501;73749367 ERS1193370 ERX1508369 GENOMIC 246583279 2016-06-10 PHESPD0072 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437991/PHESPD0072.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437991/PHESPD0072.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1437991 PHESPD0072 ERR1437993 PHESPD0074 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1437993 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437993 261d723a2b826566bdabeaae88289737;f879f64accd4a26abc4c704b0814146d 1313 112170111 5085b7a4cbd7b2a30ea7f4faa8b65708;b7460c3a9f35e181ec85e0511ca7f346 SAMEA4022262 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437993/ERR1437993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437993/ERR1437993_2.fastq.gz 1440698 WGS PHESPD0074 RANDOM 76630458;77752147 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 97b04ebe2561ec0605da693d552b3392 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437993/ERR1437993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1437993/ERR1437993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437993/PHESPD0074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437993/PHESPD0074.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437993/ERR1437993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1437993/ERR1437993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437993/PHESPD0074.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437993/PHESPD0074.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81380867;82506144 ERS1193372 ERX1508371 GENOMIC 283160483 2016-06-10 PHESPD0074 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437993/PHESPD0074.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437993/PHESPD0074.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1437993 PHESPD0074 ERR1437992 PHESPD0073 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1437992 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437992 32ca2d7543cdaa3d1b578ff9f772bc49;46a0d5adcf1403e33f87b8340c4a698c 1313 41657645 1c344912f6542cfd4f7bd95882ac3c38;6b747e9274633dbdc38ab79dc4a0d822 SAMEA4022261 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437992/ERR1437992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437992/ERR1437992_2.fastq.gz 488681 WGS PHESPD0073 RANDOM 27737762;28622377 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 28a74cd0e7828237eec6d69bae6ce15e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437992/ERR1437992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1437992/ERR1437992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437992/PHESPD0073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437992/PHESPD0073.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437992/ERR1437992_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1437992/ERR1437992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437992/PHESPD0073.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437992/PHESPD0073.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 29547155;30426657 ERS1193371 ERX1508370 GENOMIC 94611744 2016-06-10 PHESPD0073 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437992/PHESPD0073.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437992/PHESPD0073.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1437992 PHESPD0073 ERR1437994 PHESPD0075 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1437994 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437994 60d91c97eb6e16ab3ab7844c4e327875;320d0624171219fc4a67ce509d05879a 1313 128767024 02a5e908544c44818ff0fe8e39d0a8d0;99218d5eb9bc554477f29fdef4b65a3f SAMEA4022263 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437994/ERR1437994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437994/ERR1437994_2.fastq.gz 1586058 WGS PHESPD0075 RANDOM 87903539;88710495 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 491c4d3e422d9925f6126f9008ad1e41 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437994/ERR1437994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1437994/ERR1437994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437994/PHESPD0075.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437994/PHESPD0075.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437994/ERR1437994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1437994/ERR1437994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437994/PHESPD0075.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437994/PHESPD0075.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 93112403;93938375 ERS1193373 ERX1508372 GENOMIC 309469207 2016-06-10 PHESPD0075 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437994/PHESPD0075.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437994/PHESPD0075.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1437994 PHESPD0075 ERR1437996 PHESPD0077 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1437996 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437996 e30de90312eff2076ec285bda90d1526;1ca2742c88d531424bb13294b9909800 1313 74602332 320104f4174ddfccca52663b18a7125e;209949af74ba69028ce3addb7432b187 SAMEA4022265 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437996/ERR1437996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437996/ERR1437996_2.fastq.gz 935603 WGS PHESPD0077 RANDOM 50725394;51522101 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cca7516306b8de4214fa473063cab6fa ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437996/ERR1437996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1437996/ERR1437996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437996/PHESPD0077.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437996/PHESPD0077.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437996/ERR1437996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1437996/ERR1437996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437996/PHESPD0077.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437996/PHESPD0077.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 54034230;54827816 ERS1193375 ERX1508374 GENOMIC 183498006 2016-06-10 PHESPD0077 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437996/PHESPD0077.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437996/PHESPD0077.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1437996 PHESPD0077 ERR1437995 PHESPD0076 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1437995 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437995 1ef6473151db684309957874fc20f22a;79b364d85ef4da1267456624b7e0581c 1313 122131515 6673454eb618694f11424f81779472c0;072ba821de6bd6684952ff323c8aec34 SAMEA4022264 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437995/ERR1437995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437995/ERR1437995_2.fastq.gz 1501502 WGS PHESPD0076 RANDOM 83472823;84493973 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 65a4bafb7a73dcb206cbb8c11277a1c5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437995/ERR1437995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1437995/ERR1437995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437995/PHESPD0076.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437995/PHESPD0076.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437995/ERR1437995_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1437995/ERR1437995_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437995/PHESPD0076.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437995/PHESPD0076.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 88482655;89509052 ERS1193374 ERX1508373 GENOMIC 292893962 2016-06-10 PHESPD0076 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437995/PHESPD0076.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437995/PHESPD0076.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1437995 PHESPD0076 ERR1437997 PHESPD0078 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1437997 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437997 2cc5b93cf9f6224756282cefc8a8ea3d;355e391ad71e07dcb85a33229b0cee48 1313 89457566 64839e4755b1b223fcacdb56abf8c8c7;202a75654e1fae21b4d14350de57354e SAMEA4022266 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437997/ERR1437997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437997/ERR1437997_2.fastq.gz 1125177 WGS PHESPD0078 RANDOM 60654479;61374748 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 50cd170cf288b02a7718eaa8c15c3740 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437997/ERR1437997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1437997/ERR1437997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437997/PHESPD0078.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437997/PHESPD0078.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437997/ERR1437997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1437997/ERR1437997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437997/PHESPD0078.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437997/PHESPD0078.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 64521989;65250058 ERS1193376 ERX1508375 GENOMIC 220644305 2016-06-10 PHESPD0078 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437997/PHESPD0078.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437997/PHESPD0078.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1437997 PHESPD0078 ERR1437998 PHESPD0079 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1437998 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437998 bd71689c44f5fea0e4d75f390ef4afd9;c548253675b9d8f001885a81ad35c3cd 1313 129402771 363d0f17fd3722cc89d501d84aadef60;d6c6caf162c44e011ebc3d79afe3cf1f SAMEA4022267 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437998/ERR1437998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437998/ERR1437998_2.fastq.gz 1629868 WGS PHESPD0079 RANDOM 88636055;90294136 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 56713341037dd3f39658bc9f15321e39 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437998/ERR1437998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1437998/ERR1437998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437998/PHESPD0079.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437998/PHESPD0079.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437998/ERR1437998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1437998/ERR1437998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437998/PHESPD0079.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437998/PHESPD0079.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 94026596;95699272 ERS1193377 ERX1508376 GENOMIC 320132383 2016-06-10 PHESPD0079 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437998/PHESPD0079.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437998/PHESPD0079.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1437998 PHESPD0079 ERR1437999 PHESPD0080 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1437999 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437999 5e86ff3b153f75378e61f321afacb0fe;5d381a1ed72426116173a7d85a147435 1313 161236002 cfe851cc41f576984cd307090ed15cf3;b60cf927c1516d02f563dababc0fcba3 SAMEA4022268 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437999/ERR1437999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437999/ERR1437999_2.fastq.gz 1957327 WGS PHESPD0080 RANDOM 109129920;111761297 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline ab9628b4414df326634a6b44014cad54 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437999/ERR1437999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1437999/ERR1437999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437999/PHESPD0080.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437999/PHESPD0080.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437999/ERR1437999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1437999/ERR1437999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437999/PHESPD0080.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1437999/PHESPD0080.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115445379;118079555 ERS1193378 ERX1508377 GENOMIC 380735630 2016-06-10 PHESPD0080 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437999/PHESPD0080.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1437999/PHESPD0080.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1437999 PHESPD0080 ERR1438001 PHESPD0082 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438001 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438001 08492f8ed9bb6b7fd3fdea85c35b886c;2620857eb831e80ae14f2514256f1d14 1313 138651341 f0db2fc0952b125491c0058199507523;beed1bf9b417b759f5f19191d6205a82 SAMEA4022270 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438001/ERR1438001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438001/ERR1438001_2.fastq.gz 1634187 WGS PHESPD0082 RANDOM 93737333;94718570 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 2562dfaada7795fcde572b45d7781863 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438001/ERR1438001_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438001/ERR1438001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438001/PHESPD0082.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438001/PHESPD0082.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438001/ERR1438001_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438001/ERR1438001_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438001/PHESPD0082.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438001/PHESPD0082.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 99138622;100063017 ERS1193380 ERX1508379 GENOMIC 316260765 2016-06-10 PHESPD0082 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438001/PHESPD0082.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438001/PHESPD0082.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438001 PHESPD0082 ERR1438000 PHESPD0081 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438000 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438000 3a4c11f24c221ee983e9b891218144ae;1b39307996c35f19526f24893b933230 1313 127875210 fa2b324af05f18a82f6d2b1398bf24b2;a43d02442d900a483bbfd3591d5f1236 SAMEA4022269 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438000/ERR1438000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438000/ERR1438000_2.fastq.gz 1595473 WGS PHESPD0081 RANDOM 86576345;89717783 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 218b12d231b4691be67f5f1b7f0a6df3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438000/ERR1438000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438000/ERR1438000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438000/PHESPD0081.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438000/PHESPD0081.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438000/ERR1438000_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438000/ERR1438000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438000/PHESPD0081.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438000/PHESPD0081.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91837170;94975727 ERS1193379 ERX1508378 GENOMIC 312985120 2016-06-10 PHESPD0081 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438000/PHESPD0081.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438000/PHESPD0081.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438000 PHESPD0081 ERR1438002 PHESPD0083 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438002 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438002 a8c4583b980320b5aa20369ead1cf1e7;d23f68d37b8352b4996209d1e608cdd5 1313 94207432 7b43221d5ca52ade7e8e53cb1adefd8e;32fdd3fcb89e5b333bd12979c7c83e56 SAMEA4022271 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438002/ERR1438002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438002/ERR1438002_2.fastq.gz 1148516 WGS PHESPD0083 RANDOM 63099821;65973167 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 5ae607fd974f135a865289edc4e2ba70 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438002/ERR1438002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438002/ERR1438002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438002/PHESPD0083.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438002/PHESPD0083.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438002/ERR1438002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438002/ERR1438002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438002/PHESPD0083.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438002/PHESPD0083.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67027051;69904373 ERS1193381 ERX1508380 GENOMIC 228600058 2016-06-10 PHESPD0083 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438002/PHESPD0083.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438002/PHESPD0083.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438002 PHESPD0083 ERR1438004 PHESPD0085 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/004/ERR1438004 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438004 ba9c471568046f0f71d9e627ebe5eeaa;e02a232a2d8b1c0b585b32ab8c7befe0 1313 104033789 044f2fba8bd7b62d34a6020bf40dcf1a;6ffd401f92840e899693b630bd8e3586 SAMEA4022273 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438004/ERR1438004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438004/ERR1438004_2.fastq.gz 1302927 WGS PHESPD0085 RANDOM 71037638;72085285 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 665a3744f9d34d0663796420e027ea4b ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438004/ERR1438004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1438004/ERR1438004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438004/PHESPD0085.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438004/PHESPD0085.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438004/ERR1438004_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1438004/ERR1438004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438004/PHESPD0085.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438004/PHESPD0085.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75420325;76477895 ERS1193383 ERX1508382 GENOMIC 259544774 2016-06-10 PHESPD0085 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438004/PHESPD0085.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438004/PHESPD0085.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/004/ERR1438004 PHESPD0085 ERR1438003 PHESPD0084 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438003 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438003 6fe424d5ac0a28de7385e98b01a6697f;47e5a596b6618033be8ecc37e522552e 1313 161278791 29be7ff4ccd09574026587c474b2e753;6d1da14c2a23471dd22935924fd3c485 SAMEA4022272 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438003/ERR1438003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438003/ERR1438003_2.fastq.gz 1905323 WGS PHESPD0084 RANDOM 109078709;110364787 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aa8203e875d350f0586b0c818194a390 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438003/ERR1438003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438003/ERR1438003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438003/PHESPD0084.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438003/PHESPD0084.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438003/ERR1438003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438003/ERR1438003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438003/PHESPD0084.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438003/PHESPD0084.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115293702;116535427 ERS1193382 ERX1508381 GENOMIC 369065415 2016-06-10 PHESPD0084 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438003/PHESPD0084.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438003/PHESPD0084.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438003 PHESPD0084 ERR1438006 PHESPD0087 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438006 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438006 a0d37f18d02c5fc1f8f7b80a4d01ebeb;6dd77c7e11ef7dc96f2ad7fb523ab2e2 1313 119771153 127a2fdf1bcf09c4dc034d04c7cacd81;f35be238a77a9cba6495a70c12dde87a SAMEA4022275 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438006/ERR1438006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438006/ERR1438006_2.fastq.gz 1406971 WGS PHESPD0087 RANDOM 80792424;81475362 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b6318d959cb55e71e64608573ec2aaa1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438006/ERR1438006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438006/ERR1438006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438006/PHESPD0087.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438006/PHESPD0087.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438006/ERR1438006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438006/ERR1438006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438006/PHESPD0087.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438006/PHESPD0087.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 85498134;86149378 ERS1193385 ERX1508384 GENOMIC 272215654 2016-06-10 PHESPD0087 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438006/PHESPD0087.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438006/PHESPD0087.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438006 PHESPD0087 ERR1438005 PHESPD0086 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438005 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438005 8da551590be3104b93bce17b9e83d3c4;d5b572a9ee69e8f8255e26e259b53491 1313 142915226 86b79b1f6a6eeb42a0008757e4bee421;3af92324bf4a8ed95beaf7efdc8e04e0 SAMEA4022274 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438005/ERR1438005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438005/ERR1438005_2.fastq.gz 1687177 WGS PHESPD0086 RANDOM 96594813;97633304 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b77d04558968e14f8985fa43ed286a65 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438005/ERR1438005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438005/ERR1438005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438005/PHESPD0086.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438005/PHESPD0086.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438005/ERR1438005_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438005/ERR1438005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438005/PHESPD0086.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438005/PHESPD0086.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102174849;103165990 ERS1193384 ERX1508383 GENOMIC 326904312 2016-06-10 PHESPD0086 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438005/PHESPD0086.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438005/PHESPD0086.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438005 PHESPD0086 ERR1438007 PHESPD0088 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438007 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438007 ed33f6dffcf0936f5cf49b2b898d605b;0b0f1c9cf4c7e2f414049c7f632906c6 1313 140755165 1c9373cb46621623211475f6c08b2d1b;0e7cebdd90187630c2ad651bbd5ad8da SAMEA4022276 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438007/ERR1438007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438007/ERR1438007_2.fastq.gz 1653417 WGS PHESPD0088 RANDOM 94807581;95668862 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 611a2d85c5b8e08532ddd29d780ddc97 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438007/ERR1438007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438007/ERR1438007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438007/PHESPD0088.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438007/PHESPD0088.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438007/ERR1438007_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438007/ERR1438007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438007/PHESPD0088.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438007/PHESPD0088.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 100247328;101081407 ERS1193386 ERX1508385 GENOMIC 319669670 2016-06-10 PHESPD0088 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438007/PHESPD0088.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438007/PHESPD0088.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438007 PHESPD0088 ERR1438008 PHESPD0089 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438008 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438008 ec869d64dade8ab630ec062cc909a832;a12605646e201c108fc7a7aa7b083419 1313 161730243 635ca4e029e6e949d3c59c5cefec3d0c;234c9b57329d58a6920692887ea99ace SAMEA4022277 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438008/ERR1438008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438008/ERR1438008_2.fastq.gz 1912275 WGS PHESPD0089 RANDOM 109070631;110176462 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline cfa324dd0293a55a15472353e920d115 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438008/ERR1438008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438008/ERR1438008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438008/PHESPD0089.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438008/PHESPD0089.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438008/ERR1438008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438008/ERR1438008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438008/PHESPD0089.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438008/PHESPD0089.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 115289620;116367026 ERS1193387 ERX1508386 GENOMIC 370413654 2016-06-10 PHESPD0089 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438008/PHESPD0089.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438008/PHESPD0089.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438008 PHESPD0089 ERR1438009 PHESPD0090 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438009 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438009 20d2c0eddcc25ca94cae95f1a16cd255;854a5af3582805f8029ed0f55e83ac26 1313 100467203 8fed877117d831c806cea7619aee1d8f;2ac4fda01eb3ff9536f927ba50f90d7a SAMEA4022278 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438009/ERR1438009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438009/ERR1438009_2.fastq.gz 1188053 WGS PHESPD0090 RANDOM 67907480;68664267 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 96617f8323ef35a2d49e9d40fa94350d ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438009/ERR1438009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438009/ERR1438009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438009/PHESPD0090.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438009/PHESPD0090.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438009/ERR1438009_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438009/ERR1438009_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438009/PHESPD0090.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438009/PHESPD0090.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 72015486;72748800 ERS1193388 ERX1508387 GENOMIC 230229922 2016-06-10 PHESPD0090 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438009/PHESPD0090.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438009/PHESPD0090.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438009 PHESPD0090 ERR1438010 PHESPD0091 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438010 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438010 f8c91fc2d5b394f08d4bd45109bcea0f;31d5cb52b6c34b4e5e4ad2cfb136a3ce 1313 117013541 ffb201408c27dab111f1f48af8e84ed3;997ba3cdc94c5c406c94e435bd3d2056 SAMEA4022279 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438010/ERR1438010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438010/ERR1438010_2.fastq.gz 1371525 WGS PHESPD0091 RANDOM 78403574;80278958 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a71e3797eefd7e1485e0074abf32c535 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438010/ERR1438010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438010/ERR1438010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438010/PHESPD0091.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438010/PHESPD0091.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438010/ERR1438010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438010/ERR1438010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438010/PHESPD0091.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438010/PHESPD0091.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83038749;84835537 ERS1193389 ERX1508388 GENOMIC 264945735 2016-06-10 PHESPD0091 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438010/PHESPD0091.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438010/PHESPD0091.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438010 PHESPD0091 ERR1438011 PHESPD0092 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/001/ERR1438011 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438011 90efd5ac7f684159de962192f2dbe779;c3a0be4c1734f8bcc1b1eafa3266ffa2 1313 46483312 37498ef4caf0e7115668d5672dc7c727;4ed77bfd7b7647868c4662a6b9174197 SAMEA4022280 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438011/ERR1438011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438011/ERR1438011_2.fastq.gz 565683 WGS PHESPD0092 RANDOM 31531505;31790127 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6659ca6b486a5036c912f2804b754f13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438011/ERR1438011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/001/ERR1438011/ERR1438011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438011/PHESPD0092.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438011/PHESPD0092.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438011/ERR1438011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/001/ERR1438011/ERR1438011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438011/PHESPD0092.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438011/PHESPD0092.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 33640030;33898738 ERS1193390 ERX1508389 GENOMIC 110005958 2016-06-10 PHESPD0092 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438011/PHESPD0092.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438011/PHESPD0092.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/001/ERR1438011 PHESPD0092 ERR2091212 SC_EXP_22841_4#103 436 80ed3aaf76e9bbcc823db0031c7512be;3f7e248df9b0a40f43227d966d937913 1313 21a7e7b0c9292a87ecd0f9520e32d635;7d6d7f58ac118934f4c7c111751f9493 SAMEA104035409 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091212/ERR2091212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091212/ERR2091212_2.fastq.gz 2377746 WGS 9f7acd40-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51280934;54852688 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091212/ERR2091212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091212/ERR2091212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091212/22841_4#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091212/22841_4#103.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2091212/ERR2091212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2091212/ERR2091212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091212/22841_4#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091212/22841_4#103.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74835522;3884 ERS1699302 ERX2148006 GENOMIC DN477153Q:H1 297218250 2017-08-08 SC_RUN_22841_4#103 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091212/22841_4#103.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091212/22841_4#103.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#103 ERR2091125 SC_EXP_22841_4#16 440 3f46f4d5728113abcc8a22b601341f65;f417fc2ab13dd668321bf17c32aee089 1313 f2078aab5d9eaea8c8f1540e28bb5b73;54e09f15e4b92c03491d85a9c8f6ab7e SAMEA104035310 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091125/ERR2091125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091125/ERR2091125_2.fastq.gz 2509988 WGS 9796d7e0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 52007257;53333965 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091125/ERR2091125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091125/ERR2091125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091125/22841_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091125/22841_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091125/ERR2091125_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091125/ERR2091125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091125/22841_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091125/22841_4#16.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73550723;4189 ERS1699203 ERX2147919 GENOMIC DN477152P:H2 313748500 2017-08-08 SC_RUN_22841_4#16 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091125/22841_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091125/22841_4#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#16 ERR1438012 PHESPD0093 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438012 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438012 4f82360abb6b5ff32f47c0ab4855bb29;33e88b233c7103fee332d7a9d7801a0a 1313 147756927 67a4136a401b717029bd3d717ba04a0b;c1e8db2d42814842c4095997640e06d2 SAMEA4022281 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438012/ERR1438012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438012/ERR1438012_2.fastq.gz 1746396 WGS PHESPD0093 RANDOM 99909283;101151664 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4a0198712fcd4211aac68b9c39a18b57 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438012/ERR1438012_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438012/ERR1438012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438012/PHESPD0093.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438012/PHESPD0093.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438012/ERR1438012_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438012/ERR1438012_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438012/PHESPD0093.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438012/PHESPD0093.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 105677267;106887480 ERS1193391 ERX1508390 GENOMIC 338441623 2016-06-10 PHESPD0093 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438012/PHESPD0093.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438012/PHESPD0093.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438012 PHESPD0093 ERR1438013 PHESPD0094 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438013 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438013 b410cb651790d5a6205c14e581a9748d;f1c7f74dd49fc474acf6be08098faa9c 1313 159287982 2b068dcbd76da6f627046708d7a89a2f;d322af68d0de3a87d0ab36b5fcc9deb4 SAMEA4022282 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438013/ERR1438013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438013/ERR1438013_2.fastq.gz 1882318 WGS PHESPD0094 RANDOM 107565299;108936315 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline c0e88db598c8b1755c80d0b4c0241d85 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438013/ERR1438013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438013/ERR1438013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438013/PHESPD0094.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438013/PHESPD0094.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438013/ERR1438013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438013/ERR1438013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438013/PHESPD0094.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438013/PHESPD0094.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 113713149;115033387 ERS1193392 ERX1508391 GENOMIC 364405293 2016-06-10 PHESPD0094 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438013/PHESPD0094.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438013/PHESPD0094.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438013 PHESPD0094 ERR2091075 SC_EXP_22841_3#154 395 ae3cd28c1a3e8d8395ec84cada3b1d19;06840e2b80250fe160ce0067bd048182 1313 621dfa63395390fa08a09461a00dabd0;d9f84fb4ee3f6138bc14f2397b16fa08 SAMEA104035934 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091075/ERR2091075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091075/ERR2091075_2.fastq.gz 2574724 WGS ca9de480-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55465037;59559494 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091075/ERR2091075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091075/ERR2091075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091075/22841_3#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091075/22841_3#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091075/ERR2091075_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091075/ERR2091075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091075/22841_3#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091075/22841_3#154.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80814158;4283 ERS1699827 ERX2147869 GENOMIC DN483670V:E8 321840500 2017-08-08 SC_RUN_22841_3#154 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091075/22841_3#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091075/22841_3#154.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#154 ERR2090971 SC_EXP_22841_3#50 411 23ca7cd12bf58e2f230cd70614413f83;aad7f1b6350ddbfa857ea6a479cc3e27 1313 167be6f484c8bf1a35728f7a05475c44;32816618bad0419431860a0bd45f6ad3 SAMEA104035823 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090971/ERR2090971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090971/ERR2090971_2.fastq.gz 2497182 WGS c1b24320-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55163770;57981254 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090971/ERR2090971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090971/ERR2090971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090971/22841_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090971/22841_3#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090971/ERR2090971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090971/ERR2090971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090971/22841_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090971/22841_3#50.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80265146;4216 ERS1699716 ERX2147765 GENOMIC DN483669F:B7 312147750 2017-08-08 SC_RUN_22841_3#50 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090971/22841_3#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090971/22841_3#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#50 ERR2090857 SC_EXP_22841_2#126 388 ab4b7eec387f1d23fcab53885d1b8831;0e8a0749e663856e7a0155de4bdbc28b 1313 3ef435d7238460a4f503253332e5e04a;617002ff4dffaceb16bb0bd1d8476359 SAMEA104035706 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090857/ERR2090857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090857/ERR2090857_2.fastq.gz 2638810 WGS b9264df0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 57345761;61412662 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090857/ERR2090857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090857/ERR2090857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090857/22841_2#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090857/22841_2#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090857/ERR2090857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090857/ERR2090857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090857/22841_2#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090857/22841_2#126.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83511977;4419 ERS1699599 ERX2147651 GENOMIC DN483654V:G4 329851250 2017-08-08 SC_RUN_22841_2#126 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090857/22841_2#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090857/22841_2#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#126 ERR2091019 SC_EXP_22841_3#98 401 c791f78b1f2fc48ec04172480b7fb0c5;763425e6d0fb0044161e94644bcbe8fd 1313 3be33f1d035d084a74ab129ea2a35d6e;0c5837f0d2d3220e3c4825354ab48948 SAMEA104035875 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091019/ERR2091019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091019/ERR2091019_2.fastq.gz 2577502 WGS c458ab00-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55500378;59667441 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091019/ERR2091019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091019/ERR2091019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091019/22841_3#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091019/22841_3#98.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091019/ERR2091019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091019/ERR2091019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091019/22841_3#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091019/22841_3#98.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80783072;4315 ERS1699768 ERX2147813 GENOMIC DN483670V:D1 322187750 2017-08-08 SC_RUN_22841_3#98 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091019/22841_3#98.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091019/22841_3#98.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#98 ERR2090841 SC_EXP_22841_2#110 398 aac694fcea5ea7a4a4b74babe1953c04;224efb7e18721ed6193a8da54386aad5 1313 dbaa54427d303067ec67895ee0c0b486;b7592695545d6c2a899466b5c11bc2ab SAMEA104035689 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090841/ERR2090841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090841/ERR2090841_2.fastq.gz 2680264 WGS b865e420-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58213261;62756322 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090841/ERR2090841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090841/ERR2090841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090841/22841_2#110.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090841/22841_2#110.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090841/ERR2090841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090841/ERR2090841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090841/22841_2#110.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090841/22841_2#110.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85530766;4459 ERS1699582 ERX2147635 GENOMIC DN483654V:G2 335033000 2017-08-08 SC_RUN_22841_2#110 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090841/22841_2#110.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090841/22841_2#110.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#110 ERR2090895 SC_EXP_22841_2#164 392 8d08c5f8ded461cce54b28f41832cc11;41b0ca935bd820f6b49d3ef108e17cb4 1313 f1e252108b66cc37eca744bbb1f735b8;fbe7c58134d5aa52915543ea676e9033 SAMEA104035747 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090895/ERR2090895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090895/ERR2090895_2.fastq.gz 2611660 WGS bac557f0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55609308;61561606 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090895/ERR2090895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090895/ERR2090895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090895/22841_2#164.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090895/22841_2#164.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090895/ERR2090895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090895/ERR2090895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090895/22841_2#164.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090895/22841_2#164.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82858252;4376 ERS1699640 ERX2147689 GENOMIC DN483654V:E9 326457500 2017-08-08 SC_RUN_22841_2#164 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090895/22841_2#164.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090895/22841_2#164.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#164 ERR2090773 SC_EXP_22841_2#42 389 64d8318e1636543880549e7c35417440;99683d614ad7fa8629687834d2d932e2 1313 905b734109f569867418a289516d369b;1dd22d9eb62df0336f7ed024956d5af8 SAMEA104035621 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090773/ERR2090773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090773/ERR2090773_2.fastq.gz 2907328 WGS b11e2ec0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 64360815;67211942 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090773/ERR2090773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090773/ERR2090773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090773/22841_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090773/22841_2#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090773/ERR2090773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090773/ERR2090773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090773/22841_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090773/22841_2#42.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92944488;4780 ERS1699514 ERX2147567 GENOMIC DN483653U:B6 363416000 2017-08-08 SC_RUN_22841_2#42 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090773/22841_2#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090773/22841_2#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#42 ERR2090556 SC_EXP_22841_1#15 457 81bb3536d2e83b73e3949899f9b655bf;73f7cfddb7398e3bbe1963eff7bc744e 1313 84fd6e7427a683abaf497b2931a485b4;acc6a118f2750f4433f5d8f496816669 SAMEA104035208 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090556/ERR2090556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090556/ERR2090556_2.fastq.gz 1941556 WGS 8a7247c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 39033024;40254809 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090556/ERR2090556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090556/ERR2090556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090556/22841_1#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090556/22841_1#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090556/ERR2090556_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090556/ERR2090556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090556/22841_1#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090556/22841_1#15.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 54521736;3307 ERS1699101 ERX2147350 GENOMIC DN477155S:G2 242694500 2017-08-08 SC_RUN_22841_1#15 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090556/22841_1#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090556/22841_1#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#15 ERR2090404 SC_EXP_22667_7#132 445 84a6efd2b18e5815fd4b77f76e775e9c;e70bd8979359eabcd0a43a7d84665757 1313 1fe79b06408e48e95f8dd91fbb25d0e6;87f28817095b0f1c56fe8b0480d07917 SAMEA104035128 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090404/ERR2090404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090404/ERR2090404_2.fastq.gz 3174598 WGS 87228080-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60660421;66265059 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090404/ERR2090404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090404/ERR2090404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090404/22667_7#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090404/22667_7#132.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090404/ERR2090404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090404/ERR2090404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090404/22667_7#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090404/22667_7#132.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88410069;5245 ERS1699021 ERX2147198 GENOMIC DN486303N:D5 396824750 2017-08-08 SC_RUN_22667_7#132 111 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090404/22667_7#132.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090404/22667_7#132.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#132 ERR2090407 SC_EXP_22667_7#135 441 9b43f17d4f00de96ce40c4620ef1cebb;6c19725a7605152fd20fe68859f9c390 1313 b9fd8dad211f8f7d781e410c2300a176;0b5bc57567f4e672ac2012779d5a3c62 SAMEA104035131 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090407/ERR2090407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090407/ERR2090407_2.fastq.gz 2936974 WGS 874d3a00-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55734150;61082764 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090407/ERR2090407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090407/ERR2090407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090407/22667_7#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090407/22667_7#135.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090407/ERR2090407_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090407/ERR2090407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090407/22667_7#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090407/22667_7#135.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81926408;4910 ERS1699024 ERX2147201 GENOMIC DN486303N:G5 367121750 2017-08-08 SC_RUN_22667_7#135 109 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090407/22667_7#135.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090407/22667_7#135.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#135 ERR2090745 SC_EXP_22841_2#14 410 19a84c7742c3bc2bc85e02117cbefcad;4659a105184f70719aabcbaa38f7fa1a 1313 8a5f875a4f7c2a71ab3af571e77a35ee;40c5098316a52422490ab1a415256b8d SAMEA104035591 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090745/ERR2090745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090745/ERR2090745_2.fastq.gz 2592576 WGS ab022820-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58994253;60604467 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090745/ERR2090745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090745/ERR2090745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090745/22841_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090745/22841_2#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090745/ERR2090745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090745/ERR2090745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090745/22841_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090745/22841_2#14.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84550726;4307 ERS1699484 ERX2147539 GENOMIC DN483653U:F2 324072000 2017-08-08 SC_RUN_22841_2#14 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090745/22841_2#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090745/22841_2#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#14 ERR2089800 SC_EXP_22114_6#12 469 b15d4b07ae90d99a8b730a5531df035e;a38d702c46588b9206a9a74a32c63c93 1313 830e67d319e469b30af94b0f5c6d5f96;163f800a161d16832f5913974ffe3662 SAMEA104154987 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089800/ERR2089800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089800/ERR2089800_2.fastq.gz 2183348 WGS 876b2030-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48205183;47620431 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089800/ERR2089800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089800/ERR2089800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089800/22114_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089800/22114_6#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089800/ERR2089800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089800/ERR2089800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089800/22114_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089800/22114_6#12.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67150589;3710 ERS1814005 ERX2146594 GENOMIC DN478829S:D2 272918500 2017-08-08 SC_RUN_22114_6#12 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089800/22114_6#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089800/22114_6#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#12 ERR2089774 SC_EXP_22027_1#154 439 b3f8d3208b07ff26be67bacd9c92b0ef;556fe04a4f96d91953d7b44d4fc96d9f 1313 df52e45d9941e5b31c361050c4a25da2;3ca676f0b82940d88c52ae0a54975536 SAMEA104155128 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089774/ERR2089774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089774/ERR2089774_2.fastq.gz 2656952 WGS 9a9596e0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48537955;52382169 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089774/ERR2089774_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089774/ERR2089774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089774/22027_1#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089774/22027_1#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089774/ERR2089774_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089774/ERR2089774_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089774/22027_1#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089774/22027_1#154.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70846811;4400 ERS1814146 ERX2146568 GENOMIC DN477278F:B9 332119000 2017-08-08 SC_RUN_22027_1#154 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089774/22027_1#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089774/22027_1#154.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#154 ERR023326 SC_EXP_4525_7#3 203 3573c3f085dd166055c450312529cd7a 1313 62ce8badea0135a6508f6b12aabc8e0a;82510000351d1fe1f2ce9fa6e1efaa45 SAMEA685713 2011-01-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023326/ERR023326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023326/ERR023326_2.fastq.gz 1931005 WGS C12458-sc-2010-05-07-30609 RANDOM 183798455;147220687 SRF Streptococcus pneumoniae Streptococcus pneumoniae serotype 1 diversity ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023326/ERR023326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023326/ERR023326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR023/ERR023326/4525_7#3.srf ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR023/ERR023326/ERR023326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR023/ERR023326/ERR023326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR023/ERR023326/4525_7#3.srf Illumina Genome Analyzer II PAIRED Wellcome Sanger Institute;SC PRJEB2102 ERP000156 2700178704 ERS005603 ERX2007770 GENOMIC NT204047J 430614115 2011-01-06 SC_RUN_4525_7#3 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR023/ERR023326/4525_7#3.srf Streptococcus pneumoniae serotype 1 diversity-sc-2010-04-06 Illumina Genome Analyzer II paired end sequencing ERA015704 4525_7#3 ERR1764036 SC_EXP_20957_7#111 449 1975bed99bbac1640af128d9d0d1b555;3db35f5f08c0ee00444e23720d7849b8 1313 a20ce6c3385473d35c43c545ca264fb0;60698d31069d7ac70021670ee60bb4be SAMEA4392442 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/006/ERR1764036/ERR1764036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/006/ERR1764036/ERR1764036_2.fastq.gz 3787878 WGS f93bc620-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 78693222;88443670 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/006/ERR1764036/ERR1764036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/006/ERR1764036/ERR1764036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764036/20957_7#111.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764036/20957_7#111.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/006/ERR1764036/ERR1764036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/006/ERR1764036/ERR1764036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764036/20957_7#111.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764036/20957_7#111.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 120508493;6182 ERS1303891 ERX1829605 GENOMIC DN462612U:H2 473484750 2016-12-20 SC_RUN_20957_7#111 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764036/20957_7#111.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764036/20957_7#111.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#111 ERR1756441 SC_EXP_20925_3#56 418 2a1c1960b506c01469cbae86029c481a;1c0c8a68254c7268852182e10e5eec8b 1313 c26a72085c43a6dc1972dd3cd91abbfb;d0250273259af330d80ae7cf59d9b1d9 SAMEA4036446 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756441/ERR1756441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756441/ERR1756441_2.fastq.gz 5915884 WGS 3c94bbc0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 113990551;121279582 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756441/ERR1756441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756441/ERR1756441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756441/20925_3#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756441/20925_3#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/001/ERR1756441/ERR1756441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/001/ERR1756441/ERR1756441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756441/20925_3#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756441/20925_3#56.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 181827685;9751 ERS1207556 ERX1823461 GENOMIC DN461288B:A8 739485500 2016-12-13 SC_RUN_20925_3#56 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756441/20925_3#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756441/20925_3#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#56 ERR1453521 SC_EXP_19341_2#54 450 2b7334bb2ee1d9c09d01f1f2f2ddcdfe;53d1de296a0525516700b6de1f567fe6 1313 8e8bb10dceff3d5de40a55a2aabc1213;6907ed83054f28e492f6ea7439128811 SAMEA3506049 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453521/ERR1453521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453521/ERR1453521_2.fastq.gz 2958630 WGS GPS_MW_BNZ15Z-sc-2377547 RANDOM 59233349;65813499 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453521/ERR1453521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453521/ERR1453521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453521/19341_2#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453521/19341_2#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453521/ERR1453521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453521/ERR1453521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453521/19341_2#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453521/19341_2#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89958700;4929 ERS813198 ERX1523999 GENOMIC 15972505 369828750 2016-06-14 SC_RUN_19341_2#54 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453521/19341_2#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453521/19341_2#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#54 ERR997701 SC_EXP_16399_7#80 213 f9770d0427a9db79b64a6ccbfdfb22d4;9dbc585156e394f6cde5119520c933cd 1313 64ab9dd19a5c1920ca0bff8e2d853f0a;c47d4f15a0f523f9cf784e763f0025ad SAMEA3309754 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997701/ERR997701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997701/ERR997701_2.fastq.gz 5212142 WGS GPS_GM_1772-sc-2206568 RANDOM 179229748;184546810 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997701/ERR997701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997701/ERR997701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997701/16399_7#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997701/16399_7#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997701/ERR997701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997701/ERR997701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997701/16399_7#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997701/16399_7#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295834885;8381 ERS686216 ERX1076737 GENOMIC 13843442 521214200 2015-09-04 SC_RUN_16399_7#80 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997701/16399_7#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997701/16399_7#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#80 ERR1430873 SC_EXP_19183_3#75 485 e8df44ae43f6b5afc9b9a5f601306fca;462cc4a77776fc79223505170710ed63 1313 ce3268b54c77ce47aa8827bc103bcdb0;3ecf49223bd4a1d67a7ea5daa7c44689 SAMEA3448001 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1430873/ERR1430873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1430873/ERR1430873_2.fastq.gz 2204742 WGS GPS_GM_2263-sc-2296904 RANDOM 45155568;44361939 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1430873/ERR1430873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1430873/ERR1430873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430873/19183_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430873/19183_3#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1430873/ERR1430873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1430873/ERR1430873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430873/19183_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430873/19183_3#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63475285;3726 ERS745575 ERX1501251 GENOMIC 15923120 275592750 2016-06-01 SC_RUN_19183_3#75 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430873/19183_3#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430873/19183_3#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#75 ERR1430846 SC_EXP_19183_3#48 467 d830eebf1607237803b8079d90e7e3b5;cdab66fb52dae6c6ca18e93720c5f051 1313 84d28ce49abf2fd65ec4eb99ae148fd9;e23b4d0a31fb12463cb92ecca7619e4b SAMEA3447974 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430846/ERR1430846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430846/ERR1430846_2.fastq.gz 2125866 WGS GPS_GM_2236-sc-2296848 RANDOM 43893444;42050421 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430846/ERR1430846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430846/ERR1430846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430846/19183_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430846/19183_3#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1430846/ERR1430846_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1430846/ERR1430846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430846/19183_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430846/19183_3#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 60694143;3593 ERS745548 ERX1501224 GENOMIC 15923176 265733250 2016-06-01 SC_RUN_19183_3#48 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430846/19183_3#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430846/19183_3#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#48 ERR1202543 SC_EXP_17966_5#93 464 5dd3904d1fc6d42bc9a9443fbb9061e0;15d66eca68a605361a4d80f4832e33ed 1313 240d82b83e7718d512d63a192ae21d2d;048f8fc18303c14dc6ec19f68215546a SAMEA3390012 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202543/ERR1202543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202543/ERR1202543_2.fastq.gz 2376062 WGS GPS_MW_BHAAF6-sc-2296257 RANDOM 41355238;41055961 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202543/ERR1202543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202543/ERR1202543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202543/17966_5#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202543/17966_5#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202543/ERR1202543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202543/ERR1202543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202543/17966_5#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202543/17966_5#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 57289506;3986 ERS726115 ERX1274785 GENOMIC 15025514 297007750 2016-01-12 SC_RUN_17966_5#93 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202543/17966_5#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202543/17966_5#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#93 ERR979923 SC_EXP_16288_3#50 234 abd8061b12f857c4ddc3de905637ef1e;76bf0c27ac720b44dde2cefd522006cb 1313 239fc7cefc011e9042bec62e20eaa63f;9266586232f40a042a945bf58b87ba69 SAMEA3232393 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979923/ERR979923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979923/ERR979923_2.fastq.gz 4358920 WGS GPS_NP_0071-sc-2205311 RANDOM 142986086;140828328 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979923/ERR979923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979923/ERR979923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979923/16288_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979923/16288_3#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979923/ERR979923_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979923/ERR979923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979923/16288_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979923/16288_3#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 229498763;7045 ERS653604 ERX1056795 GENOMIC 13296154 435892000 2015-08-12 SC_RUN_16288_3#50 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979923/16288_3#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979923/16288_3#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#50 ERR870326 SC_EXP_15531_7#40 250 f7d1f9facb8ac9baad8986080e5424da;5ed23a3d15a4645bf65b60ac8fb78464 1313 56ddbb211cad2a697eca17025ea04a73;fe564d2573d29b6f0af212976a1b1092 SAMEA3173078 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870326/ERR870326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870326/ERR870326_2.fastq.gz 3407028 WGS GPS_GM_1222-sc-2190641 RANDOM 112781481;103435000 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870326/ERR870326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870326/ERR870326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870326/15531_7#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870326/15531_7#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870326/ERR870326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870326/ERR870326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870326/15531_7#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870326/15531_7#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 174631332;5618 ERS627321 ERX949927 GENOMIC 12888740 340702800 2015-05-06 SC_RUN_15531_7#40 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870326/15531_7#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870326/15531_7#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_7#40 ERR905749 SC_EXP_15795_1#40 250 41e0ec9c4e3e73382413798b69dd4b89;d10e4d1d12c1e0ae135702b731ea2c36 1313 7212255df2c0ef58e232a902af086909;58c419c3fee5738667d62a9147a5dc74 SAMEA3173078 2015-06-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR905/ERR905749/ERR905749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR905/ERR905749/ERR905749_2.fastq.gz 66 WGS GPS_GM_1222-sc-2190641 RANDOM 3281;3327 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR905/ERR905749/ERR905749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR905/ERR905749/ERR905749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR905/ERR905749/15795_1#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR905/ERR905749/15795_1#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR905/ERR905749/ERR905749_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR905/ERR905749/ERR905749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR905/ERR905749/15795_1#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR905/ERR905749/15795_1#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 27924;40 ERS627321 ERX985037 GENOMIC 12888740 6600 2015-06-02 SC_RUN_15795_1#40 fasp.sra.ebi.ac.uk:/vol1/run/ERR905/ERR905749/15795_1#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR905/ERR905749/15795_1#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA443105 15531_7#40 ERR979925 SC_EXP_16288_3#52 234 3b88d69a9e87acf4a83377ca82007be8;6e671e94a723469bd9f00e9e18a68431 1313 bdb8e145e090268acbfceb0206a7d81b;490c54ca49216d038ecf67aa1469e769 SAMEA3232395 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979925/ERR979925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979925/ERR979925_2.fastq.gz 4318974 WGS GPS_NP_0073-sc-2205313 RANDOM 144394111;142301490 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979925/ERR979925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979925/ERR979925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979925/16288_3#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979925/16288_3#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979925/ERR979925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979925/ERR979925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979925/16288_3#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979925/16288_3#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 231336318;6809 ERS653606 ERX1056797 GENOMIC 13296178 431897400 2015-08-12 SC_RUN_16288_3#52 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979925/16288_3#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979925/16288_3#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#52 ERR773943 SC_EXP_14913_3#34 225 efd9366df2233b3866a762edc3e96608;f5b9aff5dee1b7ba621f2bbb0508b1c1 1313 d72b49bf5a7cbb07fc20ffaa13302708;b8c185df30a08dfd806be37b1878b8de SAMEA2813959 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773943/ERR773943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773943/ERR773943_2.fastq.gz 4799558 WGS GPS_ZA_2171-sc-2022443 RANDOM 161865499;168347162 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773943/ERR773943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773943/ERR773943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773943/14913_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773943/14913_3#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773943/ERR773943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773943/ERR773943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773943/14913_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773943/14913_3#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270712198;7741 ERS566327 ERX716822 GENOMIC 12345926 479955800 2015-03-03 SC_RUN_14913_3#34 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773943/14913_3#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773943/14913_3#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#34 ERR774684 SC_EXP_14936_6#25 220 2b8244d5ecc1a00979cb0f936e943d51;3ddb4f4e9c1f19ee368f900188551e8f 1313 0116b0298ec3748c79b381751db91b22;6b4c49864423c2bd157de4ae4ece5f25 SAMEA2783818 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774684/ERR774684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774684/ERR774684_2.fastq.gz 5038342 WGS GPS_MW_BHA1AK-sc-2022314 RANDOM 181872549;179650795 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774684/ERR774684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774684/ERR774684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774684/14936_6#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774684/14936_6#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774684/ERR774684_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774684/ERR774684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774684/14936_6#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774684/14936_6#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297959554;8092 ERS553563 ERX717563 GENOMIC 12318447 503834200 2015-03-03 SC_RUN_14936_6#25 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774684/14936_6#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774684/14936_6#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_6#25 ERR773827 SC_EXP_14913_2#13 226 5d78023f0c648cae9c4a019e66ac9f4c;d3608ef8d5566316a57a702f77094a9c 1313 52b2451cee9d43ec084cf0d280cacf58;d39d305130f94ff2673e1102b6a4daa5 SAMEA2813998 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773827/ERR773827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773827/ERR773827_2.fastq.gz 5145102 WGS GPS_ZA_2245-sc-2022482 RANDOM 171414066;176963705 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773827/ERR773827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773827/ERR773827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773827/14913_2#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773827/14913_2#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773827/ERR773827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773827/ERR773827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773827/14913_2#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773827/14913_2#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285243346;8338 ERS566366 ERX716706 GENOMIC 12395933 514510200 2015-03-03 SC_RUN_14913_2#13 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773827/14913_2#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773827/14913_2#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#13 ERR730732 SC_EXP_14566_4#67 236 a5c98bf38f4ff5fc8a3f2a8938b7aa50;fc22cb6f3073d806c5ead044aa2ac4c6 1313 1ccc69fcc0f04e8988b47728d87bd12b;dacb739b88ba9ffa8953ebc3de8fb3db SAMEA2658689 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730732/ERR730732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730732/ERR730732_2.fastq.gz 4851326 WGS GPS_ZA_1634-sc-2021297 RANDOM 145788164;150425086 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730732/ERR730732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730732/ERR730732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730732/14566_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730732/14566_4#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730732/ERR730732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730732/ERR730732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730732/14566_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730732/14566_4#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242431760;7998 ERS508717 ERX674678 GENOMIC 11911769 485132600 2015-01-14 SC_RUN_14566_4#67 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730732/14566_4#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730732/14566_4#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#67 ERR730708 SC_EXP_14566_4#43 236 feee47f948edf0b778742b78e94aff29;35f98b8695647a84dd263a96976c7c5a 1313 a1c6baf4406f1e244590ad18acd44b0d;fc0110ec3fe82674a378e8463442fcb7 SAMEA2658623 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730708/ERR730708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730708/ERR730708_2.fastq.gz 4755696 WGS GPS_ZA_1610-sc-2021231 RANDOM 142258725;147307929 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730708/ERR730708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730708/ERR730708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730708/14566_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730708/14566_4#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730708/ERR730708_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730708/ERR730708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730708/14566_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730708/14566_4#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 235471454;7812 ERS508651 ERX674654 GENOMIC 11911766 475569600 2015-01-14 SC_RUN_14566_4#43 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730708/14566_4#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730708/14566_4#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#43 ERR714580 SC_EXP_14412_1#43 235 45d66afc8e16880d9f31fc665d777c9a;fca9045bfb7711259a8f7b4a0356e77b 1313 1c05871357e14d15e14e76a5257841fe;d9dd4c428b30b6a1e4525c14de0b9e58 SAMEA2658706 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714580/ERR714580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714580/ERR714580_2.fastq.gz 5478154 WGS GPS_ZA_1705-sc-2021314 RANDOM 193384614;195625785 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714580/ERR714580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714580/ERR714580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714580/14412_1#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714580/14412_1#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714580/ERR714580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714580/ERR714580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714580/14412_1#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714580/14412_1#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 319736759;9061 ERS508734 ERX658502 GENOMIC 11839051 547815400 2015-01-08 SC_RUN_14412_1#43 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714580/14412_1#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714580/14412_1#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#43 ERR714694 SC_EXP_14412_2#62 223 0e00906b1fb3adae87c2b6365f5a2c25;2a07fb9344c362c4a39e136cc5657f67 1313 53d99d722583822a55c9035b8888203e;de9b6f8138e5a6822be8cb6b35695900 SAMEA2658874 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714694/ERR714694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714694/ERR714694_2.fastq.gz 5238490 WGS GPS_ZA_1914-sc-2021511 RANDOM 180835592;184571937 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714694/ERR714694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714694/ERR714694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714694/14412_2#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714694/14412_2#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714694/ERR714694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714694/ERR714694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714694/14412_2#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714694/14412_2#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301134739;8640 ERS508902 ERX658616 GENOMIC 11883022 523849000 2015-01-08 SC_RUN_14412_2#62 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714694/14412_2#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714694/14412_2#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#62 ERR714111 SC_EXP_14410_4#9 220 4b4056ef1679fea92a9bb94296f73411;46bcf874e92f4d7ee3bdd722c80a068d 1313 b5a58c28c8834075cdc7df9a02dde1da;b74a7f98d69610a76760fe1042bb5301 SAMEA2627222 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714111/ERR714111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714111/ERR714111_2.fastq.gz 5556274 WGS GPS_GM_0272-sc-2003152 RANDOM 199643383;199659786 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714111/ERR714111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714111/ERR714111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714111/14410_4#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714111/14410_4#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714111/ERR714111_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714111/ERR714111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714111/14410_4#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714111/14410_4#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 329028702;8778 ERS497121 ERX658033 GENOMIC 11858244 555627400 2015-01-08 SC_RUN_14410_4#9 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714111/14410_4#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714111/14410_4#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#9 ERR714230 SC_EXP_14410_5#43 230 4ac99d563f6f7ff823115ce5b0cd5aaa;511cdf756fdc8a7ba5633617334647dc 1313 bc494b85db450afb06360191bc00ae66;fcd76db6fb7815cb8290851af7912077 SAMEA2627344 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714230/ERR714230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714230/ERR714230_2.fastq.gz 5570600 WGS GPS_GM_0221-sc-2003282 RANDOM 195694825;197053897 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714230/ERR714230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714230/ERR714230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714230/14410_5#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714230/14410_5#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714230/ERR714230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714230/ERR714230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714230/14410_5#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714230/14410_5#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322815171;9189 ERS497243 ERX658152 GENOMIC 11858473 557060000 2015-01-08 SC_RUN_14410_5#43 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714230/14410_5#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714230/14410_5#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_5#43 ERR632940 SC_EXP_13414_8#73 241 cd89d53c95dae5ff69f4937308298a54;3dab7f2d05f49741e00f3fe5204d618c 1313 7911508a6f1e107243e3bb21e29ecaac;ed0915f2785ba3ef4d347e2e6fc04b51 SAMEA2553754 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632940/ERR632940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632940/ERR632940_2.fastq.gz 3979466 WGS GPS_ZA_690-sc-1950834 RANDOM 129639842;133046871 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632940/ERR632940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632940/ERR632940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632940/13414_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632940/13414_8#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632940/ERR632940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632940/ERR632940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632940/13414_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632940/13414_8#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 214833738;6558 ERS464255 ERX589494 GENOMIC 10631090 397946600 2014-09-23 SC_RUN_13414_8#73 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632940/13414_8#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632940/13414_8#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#73 ERR714435 SC_EXP_14410_7#78 220 58db56218c51da3db2d84b213f8ca824;785b65a097d239441b875d487fdfaf4a 1313 ceabda709c77ab2bf30d8e41b73c8c18;6743380465b6ba8ec7144d495af9b4cf SAMEA2627537 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714435/ERR714435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714435/ERR714435_2.fastq.gz 5537056 WGS GPS_GM_0511-sc-2003500 RANDOM 193157479;194399182 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714435/ERR714435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714435/ERR714435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714435/14410_7#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714435/14410_7#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714435/ERR714435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714435/ERR714435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714435/14410_7#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714435/14410_7#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318104257;9076 ERS497436 ERX658357 GENOMIC 11883218 553705600 2015-01-08 SC_RUN_14410_7#78 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714435/14410_7#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714435/14410_7#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#78 ERR632921 SC_EXP_13414_8#54 241 0571cf599a501d1945cdf71af9877431;c19d60b4a79ca2125ec61e8a75c5b10a 1313 007e2206cd02e1af1a299bd3e4d9e7a3;b1d26abacf2a2e03adb6fdc109cc657d SAMEA2553735 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632921/ERR632921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632921/ERR632921_2.fastq.gz 4190316 WGS GPS_ZA_671-sc-1950815 RANDOM 136153695;139504075 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632921/ERR632921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632921/ERR632921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632921/13414_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632921/13414_8#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632921/ERR632921_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632921/ERR632921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632921/13414_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632921/13414_8#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 225095140;6868 ERS464236 ERX589475 GENOMIC 10631147 419031600 2014-09-23 SC_RUN_13414_8#54 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632921/13414_8#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632921/13414_8#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#54 ERR600526 SC_EXP_13415_6#26 231 16fb683e5dba2043064982c24a5b18b4;72a0ac12932085a1b338e33f7582e57b 1313 81d3bc4fb2140850e90f0b7d024431e1;a6533b26a043d923d347601cfdf3a8e2 SAMEA2554041 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600526/ERR600526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600526/ERR600526_2.fastq.gz 4544294 WGS GPS_ZA_930-sc-1951077 RANDOM 150457526;155052459 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600526/ERR600526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600526/ERR600526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600526/13415_6#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600526/13415_6#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600526/ERR600526_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600526/ERR600526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600526/13415_6#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600526/13415_6#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249803605;7495 ERS464542 ERX557355 GENOMIC 10631290 454429400 2014-09-16 SC_RUN_13415_6#26 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600526/13415_6#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600526/13415_6#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#26 ERR568446 SC_EXP_12837_1#14 237 01b96a436df5bbff18433b5597de5639;db43ff8a40239b0349aaadf07d56a394 1313 e022836ad531090952598813a92d071f;6fb3e1e80cc936b6b98eda58949b91e9 SAMEA2434426 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568446/ERR568446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568446/ERR568446_2.fastq.gz 5943652 WGS SA_GPS_SP321-sc-1895489 RANDOM 206638361;208713374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568446/ERR568446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568446/ERR568446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568446/12837_1#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568446/12837_1#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568446/ERR568446_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568446/ERR568446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568446/12837_1#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568446/12837_1#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 344462731;9665 ERS428603 ERX527435 GENOMIC 9966535 594365200 2014-07-23 SC_RUN_12837_1#14 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568446/12837_1#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568446/12837_1#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_1#14 ERR600325 SC_EXP_13415_4#15 250 c7302cefed23548fdd54d7b3ea8d270e;1f32594af79ca91b09feb8f3583e931b 1313 1189c1681299f8ce0cf05d44b4c55e13;f11632e310b98ed76d4384c997466b6c SAMEA2553791 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600325/ERR600325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600325/ERR600325_2.fastq.gz 4689726 WGS GPS_ZA_727-sc-1950872 RANDOM 149024272;153765711 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600325/ERR600325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600325/ERR600325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600325/13415_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600325/13415_4#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600325/ERR600325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600325/ERR600325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600325/13415_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600325/13415_4#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247704031;7703 ERS464292 ERX557154 GENOMIC 10631251 468972600 2014-09-16 SC_RUN_13415_4#15 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600325/13415_4#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600325/13415_4#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#15 ERR600343 SC_EXP_13415_4#33 250 34298c86c59145936a0a0f6ad54b1d1f;8574c0e972e6a2c0cdc5e494716a56f3 1313 015e53d148224d91bda799a758563a6b;dee5538da64c1c415a8447c4aa9255a6 SAMEA2553809 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600343/ERR600343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600343/ERR600343_2.fastq.gz 3840068 WGS GPS_ZA_745-sc-1950890 RANDOM 121838563;125792675 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600343/ERR600343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600343/ERR600343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600343/13415_4#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600343/13415_4#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600343/ERR600343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600343/ERR600343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600343/13415_4#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600343/13415_4#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 202163159;6304 ERS464310 ERX557172 GENOMIC 10631182 384006800 2014-09-16 SC_RUN_13415_4#33 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600343/13415_4#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600343/13415_4#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#33 ERR568718 SC_EXP_12837_4#32 226 697da2f309337f3e6c7ab49aee8e7a87;aa7c56a2ae481b4bcf91404f47e63a9f 1313 e6735cdd488aa5fb9a47af699add21ed;d161d61ab44775f44bc122f7810ab0ff SAMEA2434708 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568718/ERR568718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568718/ERR568718_2.fastq.gz 5427998 WGS SA_GPS_SP603-sc-1895774 RANDOM 190900510;193731320 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568718/ERR568718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568718/ERR568718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568718/12837_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568718/12837_4#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568718/ERR568718_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568718/ERR568718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568718/12837_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568718/12837_4#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318083617;8809 ERS428885 ERX527707 GENOMIC 9986280 542799800 2014-07-23 SC_RUN_12837_4#32 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568718/12837_4#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568718/12837_4#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#32 ERR351997 SC_EXP_10395_5#7 269 456802f4dee1dcfe3dccf3c8d827a577;b47403510608d900f97594b5198bc30a 1313 6999859002300d3dad99ca7211bbc824;75edb428c97a580a10f25e066dfa0bad SAMEA2066641 2013-10-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR351/ERR351997/ERR351997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR351/ERR351997/ERR351997_2.fastq.gz 4987456 WGS PI0050-sc-2013-05-02T11:26:07Z-1620034 RANDOM 168571393;178496928 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR351/ERR351997/ERR351997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR351/ERR351997/ERR351997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR351/ERR351997/10395_5#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR351/ERR351997/10395_5#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR351/ERR351997/ERR351997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR351/ERR351997/ERR351997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR351/ERR351997/10395_5#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR351/ERR351997/10395_5#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 284925217;8216 ERS242891 ERX324780 GENOMIC 7705363 498745600 2013-10-14 SC_RUN_10395_5#7 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR351/ERR351997/10395_5#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR351/ERR351997/10395_5#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA257935 10395_5#7 ERR506013 SC_EXP_12299_1#30 227 510f295d10d130fd059719cbdc6e5cde;71dc3aa32d69f5cb26d56ba8312f796e 1313 6824c6febe81bdcef03e12bf6535adfe;94c56f0277f944add9092e425e009858 SAMEA2336142 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506013/ERR506013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506013/ERR506013_2.fastq.gz 5445942 WGS 2009216755-sc-1811073 RANDOM 179711799;184242548 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506013/ERR506013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506013/ERR506013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506013/12299_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506013/12299_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506013/ERR506013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506013/ERR506013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506013/12299_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506013/12299_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301514906;8923 ERS394336 ERX471370 GENOMIC 9446536 544594200 2014-05-19 SC_RUN_12299_1#30 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506013/12299_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506013/12299_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#30 ERR461733 SC_EXP_11861_4#89 224 dc0706a6eb725251229907ce7e96ef08;8f41f05d315b764864dfa1581442aaf5 1313 f4a2bbf8b079d42b851b49177fa1f03c;847e150d0b4f96ab1788f7c37a407b45 SAMEA2239035 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461733/ERR461733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461733/ERR461733_2.fastq.gz 4917214 WGS 990451-sc-2013-11-05T12:06:51Z-1750403 RANDOM 155326539;158948762 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461733/ERR461733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461733/ERR461733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461733/11861_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461733/11861_4#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461733/ERR461733_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461733/ERR461733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461733/11861_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461733/11861_4#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 257317818;7997 ERS367847 ERX428074 GENOMIC 9016364 491721400 2014-03-18 SC_RUN_11861_4#89 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461733/11861_4#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461733/11861_4#89.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#89 ERR340874 SC_EXP_10208_2#60 215 2ffee4367bf479868dc7b666050a679c 1313 6cfdc34e8868c7a5c03a1fdbbbb4220e;4cdf898f1136f3cc9a3db874c25aacb1 SAMEA2057704 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340874/ERR340874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340874/ERR340874_2.fastq.gz 2798165 WGS PBCN0465-sc-2013-03-27T13:21:32Z-1603772 RANDOM 186386137;212829219 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340874/ERR340874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340874/ERR340874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340874/10208_2#60.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340874/ERR340874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340874/ERR340874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340874/10208_2#60.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 548834561 ERS225905 ERX313723 GENOMIC 7400620 559633000 2013-09-16 SC_RUN_10208_2#60 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340874/10208_2#60.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#60 ERR047914 SC_EXP_6593_4#21 238 f8ffdb027ca516ec99e53843f9b89131 1313 4b940098223114108cd1038dab72ac1a;163c25fa7eaf0b2f7376242a5f43c925 SAMEA1024089 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047914/ERR047914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047914/ERR047914_2.fastq.gz 12068570 WGS SMRU117-sc-2011-01-27-1060306 RANDOM 684901401;728485795 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047914/ERR047914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047914/ERR047914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047914/6593_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047914/ERR047914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047914/ERR047914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047914/6593_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1806472197 ERS019275 ERX024977 GENOMIC 2882496 1810285500 2011-10-11 SC_RUN_6593_4#21 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047914/6593_4#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR052621 SC_EXP_6714_7#20 225 8f0d2a6326fab9bb70d111569796489f 1313 23fe88605f75a13a8678ae408f0c8d84;fb20ccdb6a4f2dc500d2c47ca344c669 SAMEA1024576 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052621/ERR052621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052621/ERR052621_2.fastq.gz 5548585 WGS SMRU764-sc-2011-01-27-1060953 RANDOM 305489997;313047919 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052621/ERR052621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052621/ERR052621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052621/6714_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052621/ERR052621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052621/ERR052621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052621/6714_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 814614507 ERS020274 ERX029669 GENOMIC 3152273 832287750 2011-11-07 SC_RUN_6714_7#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052621/6714_7#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR316647 SC_EXP_9789_2#76 213 73945abbafd42a245b15d54e7183e6a1 1313 73fe3a9c0bae4e05e3fe0e72905abbb4;13de0508ac9536d184f591c61276db0e SAMEA2050422 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316647/ERR316647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316647/ERR316647_2.fastq.gz 2098662 WGS C22387-sc-2013-02-18T14:42:49Z-1561773 RANDOM 135651910;149286512 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316647/ERR316647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316647/ERR316647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316647/9789_2#76.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316647/ERR316647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316647/ERR316647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316647/9789_2#76.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 393778679 ERS214990 ERX289795 GENOMIC 7066781 419732400 2013-07-22 SC_RUN_9789_2#76 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316647/9789_2#76.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#76 ERR2305242 SC_EXP_22695_3#201 424 b0db686a8465b24892ae6967c29b2f67;ac16de3b823c23de6400591ea3530b25 1313 214c83ef19a40a4ac7ffd8ace89bcccf;50804709e252060ebff1614e12382bfa SAMEA104034885 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305242/ERR2305242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305242/ERR2305242_2.fastq.gz 2059358 WGS fab780d0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 57822463;76630956 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305242/ERR2305242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305242/ERR2305242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305242/22695_3#201.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305242/22695_3#201.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305242/ERR2305242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305242/ERR2305242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305242/22695_3#201.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305242/22695_3#201.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 98238539;3513 ERS1698778 ERX2356552 GENOMIC DN477146R:C2 310963058 2018-02-16 SC_RUN_22695_3#201 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305242/22695_3#201.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305242/22695_3#201.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808853 ERR2667126 SC_EXP_24775_1#98 411 87bc05fb5d680f74ab49e2fcc1261db2;cee33241d69849fb92ac1e6a05ce78b9 1313 df309d3f91b4953007f613ca280d2768;5e0021a33e3412082c0169af0648f78b SAMEA4732941 2018-06-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2667126/ERR2667126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2667126/ERR2667126_2.fastq.gz 1951502 WGS f0566b6e-af2d-11e7-a639-3c4a9275d6c8 RANDOM 44526111;58629095 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2667126/ERR2667126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2667126/ERR2667126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667126/24775_1#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667126/24775_1#98.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/006/ERR2667126/ERR2667126_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/006/ERR2667126/ERR2667126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667126/24775_1#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667126/24775_1#98.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73790689;3367 ERS2553067 ERX2682240 GENOMIC DN502974T:B1 294676802 2018-06-26 SC_RUN_24775_1#98 118 fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2667126/24775_1#98.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2667126/24775_1#98.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 HiSeq X Ten paired end sequencing ERA1526580 24775_1#98 ERR2091196 SC_EXP_22841_4#87 433 c5ca4fb7715787f904cabe085d8e4379;7312a4ec7ce779a16c99f702f319421d 1313 c64f84cfe59d39f920f4e33441cdb1d8;53d0495e06f1dd340815f06d57652a5c SAMEA104035393 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091196/ERR2091196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091196/ERR2091196_2.fastq.gz 2732992 WGS 9a60a640-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 56407466;59307350 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091196/ERR2091196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091196/ERR2091196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091196/22841_4#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091196/22841_4#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091196/ERR2091196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091196/ERR2091196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091196/22841_4#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091196/22841_4#87.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81548080;4491 ERS1699286 ERX2147990 GENOMIC DN477152P:G11 341624000 2017-08-08 SC_RUN_22841_4#87 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091196/22841_4#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091196/22841_4#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#87 ERR2091129 SC_EXP_22841_4#20 429 f660849805887b0fc4e36dc29dfbe752;9299f737436fe1613f3bb4a45162943c 1313 929a35003eaf1c6cabfaec7d2088724e;384e176aeac1127be87d92452827c190 SAMEA104035314 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091129/ERR2091129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091129/ERR2091129_2.fastq.gz 2664954 WGS 97c67360-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 53424292;56308745 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091129/ERR2091129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091129/ERR2091129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091129/22841_4#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091129/22841_4#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091129/ERR2091129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091129/ERR2091129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091129/22841_4#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091129/22841_4#20.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77027043;4452 ERS1699207 ERX2147923 GENOMIC DN477152P:D3 333119250 2017-08-08 SC_RUN_22841_4#20 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091129/22841_4#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091129/22841_4#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#20 ERR2090546 SC_EXP_22841_1#5 441 e158346bf26eb3e5bdd30482bae15a20;1689a2f1aab8cefe3ddc6875eb40deb0 1313 4045fb342726b519ecdcb482d5158241;9db96086560a8854453c4cda25d365e6 SAMEA104035198 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090546/ERR2090546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090546/ERR2090546_2.fastq.gz 2107388 WGS 89f4da60-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 40085345;42530044 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090546/ERR2090546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090546/ERR2090546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090546/22841_1#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090546/22841_1#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090546/ERR2090546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090546/ERR2090546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090546/22841_1#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090546/22841_1#5.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 57326854;3577 ERS1699091 ERX2147340 GENOMIC DN477155S:E1 263423500 2017-08-08 SC_RUN_22841_1#5 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090546/22841_1#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090546/22841_1#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#5 ERR2090398 SC_EXP_22667_7#126 447 7c2ae4c1ea170e8096c0a12a2f4c6158;ec396e3daa3e8d20d1231f24d5096b20 1313 e4213803d04e2ce40d79b9bac437141f;02600c513ee75c10dae3d838a63607b4 SAMEA104035122 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090398/ERR2090398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090398/ERR2090398_2.fastq.gz 3129162 WGS 86dcc4f0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58728309;64790941 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090398/ERR2090398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090398/ERR2090398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090398/22667_7#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090398/22667_7#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090398/ERR2090398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090398/ERR2090398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090398/22667_7#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090398/22667_7#126.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86473294;5178 ERS1699015 ERX2147192 GENOMIC DN486303N:F4 391145250 2017-08-08 SC_RUN_22667_7#126 116 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090398/22667_7#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090398/22667_7#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#126 ERR2090393 SC_EXP_22667_7#121 436 54b0cbce447f95c32f12674121f46d04;c8dcb0200a4f7df480433d05141e0df2 1313 3cba557f744d32ee3e599a0790b9fb07;da7ed808f8208d2f09badd1e3ce425af SAMEA104035117 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090393/ERR2090393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090393/ERR2090393_2.fastq.gz 3298060 WGS 868221d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62549756;67678529 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090393/ERR2090393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090393/ERR2090393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090393/22667_7#121.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090393/22667_7#121.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090393/ERR2090393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090393/ERR2090393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090393/22667_7#121.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090393/22667_7#121.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90739205;5443 ERS1699010 ERX2147187 GENOMIC DN486303N:A4 412257500 2017-08-08 SC_RUN_22667_7#121 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090393/22667_7#121.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090393/22667_7#121.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#121 ERR2089405 SC_EXP_21999_7#143 458 283742a3c6b944ed909bb7f9aad8727d;7e21b5d339de6296a698033b00af797d 1313 605ef0ffa64983eed5e77636b4a0f660;6f69abfb1182170b07dc8adbfd8c9727 SAMEA104154670 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089405/ERR2089405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089405/ERR2089405_2.fastq.gz 2263740 WGS 674bdbf0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 45325346;49039793 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089405/ERR2089405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089405/ERR2089405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089405/21999_7#143.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089405/21999_7#143.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089405/ERR2089405_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089405/ERR2089405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089405/21999_7#143.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089405/21999_7#143.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65639626;3813 ERS1813688 ERX2146199 GENOMIC DN476874P:H6 282967500 2017-08-08 SC_RUN_21999_7#143 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089405/21999_7#143.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089405/21999_7#143.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#143 ERR1453716 SC_EXP_19341_3#68 448 a3c0a9c1b97db757e144dc8bac39ffec;a6109c1f2b98b0a0478142d9ff5eac0f 1313 f0e731496ce72fb0f215e2b5be610aa9;63589cea8c9d23a5262d2e80b4c0433a SAMEA3714033 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453716/ERR1453716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453716/ERR1453716_2.fastq.gz 2358454 WGS 40ade230-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 48040065;52985895 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453716/ERR1453716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453716/ERR1453716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453716/19341_3#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453716/19341_3#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453716/ERR1453716_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453716/ERR1453716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453716/19341_3#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453716/19341_3#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71629243;3996 ERS1021182 ERX1524194 GENOMIC 16008458 294806750 2016-06-14 SC_RUN_19341_3#68 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453716/19341_3#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453716/19341_3#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#68 ERR1947753 SC_EXP_21946_6#233 448 3f1f2800be352e4c83d75144c98b5834;9e961b4ab6b450f819fdf27159b1c677 1313 230346083e173fd00ed0d98daa5c04c6;2bb91dfb2671211947fc718169eb8f25 SAMEA4561048 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947753/ERR1947753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947753/ERR1947753_2.fastq.gz 2207806 WGS 0384c4e0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57140306;80143843 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947753/ERR1947753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947753/ERR1947753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947753/21946_6#233.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947753/21946_6#233.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947753/ERR1947753_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947753/ERR1947753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947753/21946_6#233.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947753/21946_6#233.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100031814;3746 ERS1460227 ERX2013540 GENOMIC 18471381 333378706 2017-04-25 SC_RUN_21946_6#233 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947753/21946_6#233.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947753/21946_6#233.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1453587 SC_EXP_19341_2#120 445 69a71c9eac13d412033743cc762cc15f;bfd36994be95fa708b70efd1bbd242b6 1313 c0cb50bf036c6d7a23fbfe48ca415688;63b23d298d9a75fadaa7e931195b5e74 SAMEA3713943 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453587/ERR1453587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453587/ERR1453587_2.fastq.gz 2685484 WGS 394a4060-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 51615406;60292070 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453587/ERR1453587_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453587/ERR1453587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453587/19341_2#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453587/19341_2#120.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453587/ERR1453587_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453587/ERR1453587_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453587/19341_2#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453587/19341_2#120.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79911958;4515 ERS1021092 ERX1524065 GENOMIC 15972576 335685500 2016-06-14 SC_RUN_19341_2#120 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453587/19341_2#120.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453587/19341_2#120.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#120 ERR1422615 SC_EXP_19084_8#102 414 060db7c66f1ef9816e003b2b8dd5298f;acb2006ab406b7237fd138948b478898 1313 ae01696456ff3a9827716a1af1e63b21;a43ce043efd3cc704e0f51db8f8a616f SAMEA3714439 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422615/ERR1422615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422615/ERR1422615_2.fastq.gz 2630256 WGS 52490650-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 58370365;57790399 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422615/ERR1422615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422615/ERR1422615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422615/19084_8#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422615/19084_8#102.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422615/ERR1422615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422615/ERR1422615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422615/19084_8#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422615/19084_8#102.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84323128;4441 ERS1021588 ERX1493197 GENOMIC 15758519 328782000 2016-05-24 SC_RUN_19084_8#102 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422615/19084_8#102.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422615/19084_8#102.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#102 ERR1288980 SC_EXP_18456_1#171 459 afe66462ee9e526ee283677cd41c1f3a;e2acb333b058ee28e99357fe5055c07a 1313 6148317aebbff34d8f4aa6083ac56d93;d2619aced67ffda7300ca4e7bd8d5565 SAMEA3389350 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288980/ERR1288980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288980/ERR1288980_2.fastq.gz 1806054 WGS GPS_MW_1303_UNC-sc-2295825 RANDOM 39592652;41364159 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288980/ERR1288980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288980/ERR1288980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288980/18456_1#171.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288980/18456_1#171.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/000/ERR1288980/ERR1288980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/000/ERR1288980/ERR1288980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288980/18456_1#171.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288980/18456_1#171.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 57080572;3140 ERS725453 ERX1360586 GENOMIC 14970447 225756750 2016-02-23 SC_RUN_18456_1#171 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288980/18456_1#171.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288980/18456_1#171.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#171 ERR1214429 SC_EXP_18090_1#109 448 900062bc22e46bce8131344d143cdf0f;f53b5fcce37a8ed6d66cfe572159b8b8 1313 af77320d49d71d1d74f46d221272cfcd;3298e4bb80a9d8ee37752cab8a0bb1f0 SAMEA3431379 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214429/ERR1214429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214429/ERR1214429_2.fastq.gz 2593792 WGS GPS_US_PATH3765-sc-2296553 RANDOM 51361302;56539146 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214429/ERR1214429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214429/ERR1214429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214429/18090_1#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214429/18090_1#109.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214429/ERR1214429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214429/ERR1214429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214429/18090_1#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214429/18090_1#109.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76395453;4408 ERS740664 ERX1286642 GENOMIC 15034876 324224000 2016-01-19 SC_RUN_18090_1#109 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214429/18090_1#109.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214429/18090_1#109.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#109 ERR1214695 SC_EXP_18090_2#187 454 d54064859eeaa76deddb90124925d732;cb0bf50793f90941d9cfc12e929e4f4b 1313 1f54c9bca4a098949a623189e73c042e;b4c8e7660eb7299ca1c7b0da7b3d462d SAMEA3431647 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214695/ERR1214695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214695/ERR1214695_2.fastq.gz 3162750 WGS GPS_HK_191-sc-2296894 RANDOM 60371306;65734867 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214695/ERR1214695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214695/ERR1214695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214695/18090_2#187.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214695/18090_2#187.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/005/ERR1214695/ERR1214695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/005/ERR1214695/ERR1214695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214695/18090_2#187.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214695/18090_2#187.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89001435;5269 ERS740932 ERX1286908 GENOMIC 15080083 395343750 2016-01-19 SC_RUN_18090_2#187 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214695/18090_2#187.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214695/18090_2#187.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#187 ERR1202544 SC_EXP_17966_5#94 464 281002d8c374bf4352f9c1de977140c2;e2dd3d7f920e98f5fbd28ef8755a7724 1313 f057790c9d821d684bd819bb835e6898;1db5dae5494c828ed035b3974ec362b1 SAMEA3390014 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202544/ERR1202544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202544/ERR1202544_2.fastq.gz 2348242 WGS GPS_MW_BKQFG1-sc-2296259 RANDOM 39859576;39163055 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202544/ERR1202544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202544/ERR1202544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202544/17966_5#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202544/17966_5#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202544/ERR1202544_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202544/ERR1202544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202544/17966_5#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202544/17966_5#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 54795122;3952 ERS726117 ERX1274786 GENOMIC 15025526 293530250 2016-01-12 SC_RUN_17966_5#94 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202544/17966_5#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202544/17966_5#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#94 ERR1202542 SC_EXP_17966_5#92 464 02ebd3752ac204e7bb81735f96b2e56e;fa61aff16eee8359d5d933ad0392488c 1313 ab4a62411cdac9468258b6d418976cba;2c64275cf4cbab493bcee7e2d5e3a515 SAMEA3390010 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202542/ERR1202542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202542/ERR1202542_2.fastq.gz 2404378 WGS GPS_MW_BKR5DO-sc-2296255 RANDOM 40842751;40481790 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202542/ERR1202542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202542/ERR1202542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202542/17966_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202542/17966_5#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202542/ERR1202542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202542/ERR1202542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202542/17966_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202542/17966_5#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56622471;4045 ERS726113 ERX1274784 GENOMIC 15025502 300547250 2016-01-12 SC_RUN_17966_5#92 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202542/17966_5#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202542/17966_5#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#92 ERR1192163 SC_EXP_17794_8#152 441 bbbbfee10f06aa7aea724f5233dce6dd;644f5bb7abe21e997865ea44b966c4e4 1313 0789fedf8f89123b14152ef916e288fe;f47e40d80b90a140a57058fe16f129fb SAMEA3388921 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192163/ERR1192163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192163/ERR1192163_2.fastq.gz 3313156 WGS GPS_MA_572-sc-2279605 RANDOM 59577350;63890389 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192163/ERR1192163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192163/ERR1192163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192163/17794_8#152.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192163/17794_8#152.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192163/ERR1192163_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192163/ERR1192163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192163/17794_8#152.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192163/17794_8#152.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 95431334;5488 ERS725024 ERX1265547 GENOMIC 14941635 414144500 2015-12-17 SC_RUN_17794_8#152 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192163/17794_8#152.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192163/17794_8#152.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#152 ERR1192052 SC_EXP_17794_8#41 441 1f245caced315b4676276927ba4c2922;5b8c52dc15d0326df27bcd078dfd58da 1313 13f326bbef36815e4afa8b07f7baf0d2;032677dc9ed1a0dd4d3b130b1f1d670a SAMEA3381552 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192052/ERR1192052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192052/ERR1192052_2.fastq.gz 2661330 WGS GPS_GM_2075-sc-2279430 RANDOM 50776803;51463188 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192052/ERR1192052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192052/ERR1192052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192052/17794_8#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192052/17794_8#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192052/ERR1192052_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192052/ERR1192052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192052/17794_8#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192052/17794_8#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78188737;4453 ERS719811 ERX1265436 GENOMIC 14941536 332666250 2015-12-17 SC_RUN_17794_8#41 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192052/17794_8#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192052/17794_8#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#41 ERR1191843 SC_EXP_17794_7#21 458 37a7f0fb31d8d86d5dd3c226000d3aa1;6b487afe05a831d9bd628be788292a39 1313 20e1a8175ef61a0bcd877e604caab136;54f5d141ff8bf4071f02db4e1e7dbf73 SAMEA3381568 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191843/ERR1191843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191843/ERR1191843_2.fastq.gz 1046074 WGS GPS_GM_2083-sc-2279446 RANDOM 22387381;22218236 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191843/ERR1191843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191843/ERR1191843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191843/17794_7#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191843/17794_7#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191843/ERR1191843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191843/ERR1191843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191843/17794_7#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191843/17794_7#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 32604178;1787 ERS719827 ERX1265227 GENOMIC 14934781 130759250 2015-12-17 SC_RUN_17794_7#21 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191843/17794_7#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191843/17794_7#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#21 ERR1202513 SC_EXP_17966_5#63 464 f8538f6334f87ac380f3e9e65b1534bd;be803ff7ed97d475d9f4bdee433eadae 1313 53a79a2d4f4ca8dc8f61d51e3cbdcb21;3a33f4cf187866aa3d3a43837eca707f SAMEA3389953 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202513/ERR1202513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202513/ERR1202513_2.fastq.gz 1808722 WGS GPS_MW_1005892-sc-2296199 RANDOM 31441641;32204168 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202513/ERR1202513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202513/ERR1202513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202513/17966_5#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202513/17966_5#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202513/ERR1202513_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202513/ERR1202513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202513/17966_5#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202513/17966_5#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 44144321;3081 ERS726056 ERX1274755 GENOMIC 15025534 226090250 2016-01-12 SC_RUN_17966_5#63 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202513/17966_5#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202513/17966_5#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#63 ERR1065760 SC_EXP_17150_5#27 460 cc00c40d4d06612abb47e2bd02f2a67a;a18add57b69d1a4276e293c543bb194d 1313 0d8030c71b9e5a014a5f1162938674e0;ce75ebf5d4d04f2eb8729a1888aeaf4b SAMEA3353770 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065760/ERR1065760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065760/ERR1065760_2.fastq.gz 3840772 WGS GPS_ZA_carriage_SP1819-sc-2278374 RANDOM 78154815;75657210 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065760/ERR1065760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065760/ERR1065760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065760/17150_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065760/17150_5#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065760/ERR1065760_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065760/ERR1065760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065760/17150_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065760/17150_5#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 115984485;6389 ERS708125 ERX1145910 GENOMIC 14423223 480096500 2015-10-13 SC_RUN_17150_5#27 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065760/17150_5#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065760/17150_5#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#27 ERR980350 SC_EXP_16288_8#82 202 f345f926415b018775a2869482456768;953f395ce40fbbcfdf927f946a08d0a6 1313 d5a7c061890b281b5eb06a8dfa20f23c;c909ad65587fe54cc7bc420d22e5dd00 SAMEA3232848 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980350/ERR980350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980350/ERR980350_2.fastq.gz 5001476 WGS GPS_NP_4239-sc-2205762 RANDOM 169701536;170467930 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980350/ERR980350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980350/ERR980350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980350/16288_8#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980350/16288_8#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980350/ERR980350_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980350/ERR980350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980350/16288_8#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980350/16288_8#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277843067;8096 ERS654059 ERX1057222 GENOMIC 13301771 500147600 2015-08-12 SC_RUN_16288_8#82 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980350/16288_8#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980350/16288_8#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#82 ERR980039 SC_EXP_16288_4#83 217 686ca3336d858d7eaca12d1aa24aa943;337353ed00e2c2523dabfd9036a5f639 1313 b0fa4f7c3cafbb60d993e9d380d61598;f1653b0533f4cc269ec3b97d7c1f3a51 SAMEA3232509 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980039/ERR980039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980039/ERR980039_2.fastq.gz 5887054 WGS GPS_NP_4057-sc-2205427 RANDOM 205592384;197960519 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980039/ERR980039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980039/ERR980039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980039/16288_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980039/16288_4#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980039/ERR980039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980039/ERR980039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980039/16288_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980039/16288_4#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 329944974;9560 ERS653720 ERX1056911 GENOMIC 13296267 588705400 2015-08-12 SC_RUN_16288_4#83 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980039/16288_4#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980039/16288_4#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#83 ERR980333 SC_EXP_16288_8#60 202 f06aae8d9ee35c15a2a1edabbf99682c;db3e3628c70fa38abcee6d89a43c17f5 1313 8cb438028516390e0b2ed104662bae08;df143c2437db91aeafa18d0fc6c2dab4 SAMEA3232826 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980333/ERR980333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980333/ERR980333_2.fastq.gz 4993422 WGS GPS_NP_0045-sc-2205738 RANDOM 166936434;162938452 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980333/ERR980333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980333/ERR980333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980333/16288_8#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980333/16288_8#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980333/ERR980333_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980333/ERR980333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980333/16288_8#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980333/16288_8#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266770745;8079 ERS654037 ERX1057205 GENOMIC 13301792 499342200 2015-08-12 SC_RUN_16288_8#60 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980333/16288_8#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980333/16288_8#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#60 ERR870189 SC_EXP_15531_5#92 214 1d7e1444ecd9d336e7b0e0d6fc7003cc;a04abc35d4a7e0f855b971d46f4f2c62 1313 b7970113fb07864cd74d8e4f056c709d;6c235c298a101f2b8ea1e70d9f3d3bf4 SAMEA3172929 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870189/ERR870189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870189/ERR870189_2.fastq.gz 3556856 WGS GPS_GM_1073-sc-2190487 RANDOM 137090600;130368348 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870189/ERR870189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870189/ERR870189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870189/15531_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870189/15531_5#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870189/ERR870189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870189/ERR870189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870189/15531_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870189/15531_5#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 221261841;5824 ERS627172 ERX949790 GENOMIC 12870938 355685600 2015-05-06 SC_RUN_15531_5#92 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870189/15531_5#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870189/15531_5#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#92 ERR979898 SC_EXP_16288_3#25 234 1818732ae4fe4b0042314e19a9bddfc7;5edbfe33adb860ef933031e66ca508d9 1313 e78abcd4fe0ddcb9ea31bf7591668294;c9cd657c746157dc698f526e3ab213c4 SAMEA3232369 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979898/ERR979898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979898/ERR979898_2.fastq.gz 4689648 WGS GPS_NP_0046-sc-2205286 RANDOM 151875304;149380599 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979898/ERR979898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979898/ERR979898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979898/16288_3#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979898/16288_3#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979898/ERR979898_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979898/ERR979898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979898/16288_3#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979898/16288_3#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242449639;7573 ERS653579 ERX1056770 GENOMIC 13296139 468964800 2015-08-12 SC_RUN_16288_3#25 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979898/16288_3#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979898/16288_3#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#25 ERR750844 SC_EXP_14723_2#21 226 a0a978947b4c5099c19e1a93b90b0cb5;dcffc960b6f21701e3c3af9ab0d85adf 1313 9c632debe04162e8af1554fd08a3f853;f7484d7e22c22b832d8a9d91faa46bda SAMEA2797094 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750844/ERR750844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750844/ERR750844_2.fastq.gz 6556192 WGS GPS_US_PATH3644-sc-2139121 RANDOM 239119112;242557355 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750844/ERR750844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750844/ERR750844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750844/14723_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750844/14723_2#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750844/ERR750844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750844/ERR750844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750844/14723_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750844/14723_2#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 402321030;10646 ERS558705 ERX694526 GENOMIC 12133630 655619200 2015-02-03 SC_RUN_14723_2#21 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750844/14723_2#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750844/14723_2#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#21 ERR774600 SC_EXP_14936_5#36 211 79c76a3307a3f749582907323bf15ba8;f5ec2b0e44273cf98ca13fafce321b1a 1313 f7cfc75401c07c8eff6e70a428575c44;79df33e24de4e9a02d818feb65dd93d5 SAMEA2783662 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774600/ERR774600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774600/ERR774600_2.fastq.gz 4313700 WGS GPS_MW_C10270_R1-sc-2022157 RANDOM 155146329;156587971 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774600/ERR774600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774600/ERR774600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774600/14936_5#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774600/14936_5#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774600/ERR774600_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774600/ERR774600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774600/14936_5#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774600/14936_5#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258247662;7055 ERS553407 ERX717479 GENOMIC 12403504 431370000 2015-03-03 SC_RUN_14936_5#36 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774600/14936_5#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774600/14936_5#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#36 ERR845778 SC_EXP_15277_1#45 250 5e824bc8d607beb14be526bc2c7e1316;f022a0cd682430c6cb84e3007d890558 1313 a880e36852e4bcd25542124018c8abcb;b9b224812e7fb3bebcd6b731c4bbcbd4 SAMEA2797117 2015-04-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845778/ERR845778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845778/ERR845778_2.fastq.gz 710034 WGS GPS_US_PATH3679-sc-2139144 RANDOM 24152976;25290314 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845778/ERR845778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845778/ERR845778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845778/15277_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845778/15277_1#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845778/ERR845778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845778/ERR845778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845778/15277_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845778/15277_1#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 39107350;1193 ERS558728 ERX926689 GENOMIC 12591426 71003400 2015-04-08 SC_RUN_15277_1#45 fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845778/15277_1#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845778/15277_1#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA428759 15277_1#45 ERR870259 SC_EXP_15531_6#67 212 fb75c3254097e3ddce528ada629623be;60c961a14b609fd6e6ef04f6e6afc4a4 1313 87d5c4cef04a6418dd09315bb79b3523;7550358ea14114acda9e866f87ed3792 SAMEA3173010 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870259/ERR870259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870259/ERR870259_2.fastq.gz 4333208 WGS GPS_GM_1154-sc-2190569 RANDOM 164424603;155669756 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870259/ERR870259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870259/ERR870259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870259/15531_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870259/15531_6#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870259/ERR870259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870259/ERR870259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870259/15531_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870259/15531_6#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266104481;7073 ERS627253 ERX949860 GENOMIC 12870048 433320800 2015-05-06 SC_RUN_15531_6#67 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870259/15531_6#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870259/15531_6#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#67 ERR870311 SC_EXP_15531_7#25 250 b01231fa6aacf1f6125fb193bace933f;62936a3d1c28e4bbfe4dbc442e020b96 1313 767c404d5d486bc175dc03610732ba60;275508030202caa47976b0696dc54781 SAMEA3173063 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870311/ERR870311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870311/ERR870311_2.fastq.gz 2780506 WGS GPS_GM_1207-sc-2190623 RANDOM 93029116;85672225 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870311/ERR870311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870311/ERR870311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870311/15531_7#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870311/15531_7#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870311/ERR870311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870311/ERR870311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870311/15531_7#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870311/15531_7#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 143340637;4557 ERS627306 ERX949912 GENOMIC 12888655 278050600 2015-05-06 SC_RUN_15531_7#25 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870311/15531_7#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870311/15531_7#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_7#25 ERR750825 SC_EXP_14723_2#2 226 e4f403d830d57fe0bfa0eb459c16b4fd;813bf2818654f27455838c859bef4251 1313 80264b33488941bb17c26c9e05c7eeef;96e4e1dd3e3673c2d7f8fc1746f7d02b SAMEA2797075 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750825/ERR750825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750825/ERR750825_2.fastq.gz 5220700 WGS GPS_US_PATH3623-sc-2139102 RANDOM 189636264;192277505 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750825/ERR750825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750825/ERR750825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750825/14723_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750825/14723_2#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750825/ERR750825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750825/ERR750825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750825/14723_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750825/14723_2#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 317546406;8483 ERS558686 ERX694507 GENOMIC 12133592 522070000 2015-02-03 SC_RUN_14723_2#2 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750825/14723_2#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750825/14723_2#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#2 ERR750851 SC_EXP_14723_2#28 226 476d1533279512d03b421fdfcc7def63;eb75d4b7cd2eb2aeca772d44bb5ab556 1313 dc6d98d7d82f81a10032956cf624144c;7cf4e4a3528378e40fcf9fdd06d648d9 SAMEA2797101 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750851/ERR750851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750851/ERR750851_2.fastq.gz 6452750 WGS GPS_US_PATH3651-sc-2139128 RANDOM 234748680;239175625 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750851/ERR750851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750851/ERR750851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750851/14723_2#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750851/14723_2#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750851/ERR750851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750851/ERR750851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750851/14723_2#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750851/14723_2#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 395554617;10464 ERS558712 ERX694533 GENOMIC 12133619 645275000 2015-02-03 SC_RUN_14723_2#28 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750851/14723_2#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750851/14723_2#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#28 ERR750850 SC_EXP_14723_2#27 226 7405ccf9907576e46a4a74f01cc6033b;e3716837f89ca9fe8c330ee25ed53c43 1313 d24de544c424e707ac89b7d3ee8b2ed2;7740579bf25424308ba513ac11cd9f9a SAMEA2797100 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750850/ERR750850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750850/ERR750850_2.fastq.gz 6112698 WGS GPS_US_PATH3650-sc-2139127 RANDOM 223926175;228245994 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750850/ERR750850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750850/ERR750850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750850/14723_2#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750850/14723_2#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750850/ERR750850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750850/ERR750850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750850/14723_2#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750850/14723_2#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 377025113;9918 ERS558711 ERX694532 GENOMIC 12133607 611269800 2015-02-03 SC_RUN_14723_2#27 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750850/14723_2#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750850/14723_2#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#27 ERR750821 SC_EXP_14723_1#93 225 aec8d3fbfd06dd30a42431ffa51fdced;0700eb70950287be0eb426ba8d2880a9 1313 723e0e47d166b784aa896b3fceaea1fd;3952fcf1768899e9e9cfdff2e2719ee1 SAMEA2797071 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750821/ERR750821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750821/ERR750821_2.fastq.gz 5220452 WGS GPS_US_PATH3619-sc-2139098 RANDOM 190081196;192744607 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750821/ERR750821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750821/ERR750821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750821/14723_1#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750821/14723_1#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750821/ERR750821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750821/ERR750821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750821/14723_1#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750821/14723_1#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 317004809;8516 ERS558682 ERX694503 GENOMIC 12123405 522045200 2015-02-03 SC_RUN_14723_1#93 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750821/14723_1#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750821/14723_1#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#93 ERR750817 SC_EXP_14723_1#89 225 1a42a8662a184bdb6269e4d54fb20a4b;803239ca356733f44d33bb09587183d7 1313 4367d482f5b202052944c78ba149be50;e6e8465c7a76b657bdae937ebcf66a07 SAMEA2797067 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750817/ERR750817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750817/ERR750817_2.fastq.gz 6570292 WGS GPS_US_PATH3615-sc-2139094 RANDOM 237960529;240783029 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750817/ERR750817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750817/ERR750817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750817/14723_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750817/14723_1#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750817/ERR750817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750817/ERR750817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750817/14723_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750817/14723_1#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 399933037;10687 ERS558678 ERX694499 GENOMIC 12123357 657029200 2015-02-03 SC_RUN_14723_1#89 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750817/14723_1#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750817/14723_1#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#89 ERR714381 SC_EXP_14410_7#24 220 9690713f77e4393431c116110c19c337;a524c0e270d6785df9387ec7ee0cd6fc 1313 7678e6db8444c7feba882a21a75d006b;7f17170fc08724f735365fc34d7d4cc3 SAMEA2627357 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714381/ERR714381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714381/ERR714381_2.fastq.gz 6765654 WGS GPS_GM_0457-sc-2003295 RANDOM 238213931;240155172 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714381/ERR714381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714381/ERR714381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714381/14410_7#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714381/14410_7#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714381/ERR714381_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714381/ERR714381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714381/14410_7#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714381/14410_7#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 395922215;10931 ERS497256 ERX658303 GENOMIC 11883235 676565400 2015-01-08 SC_RUN_14410_7#24 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714381/14410_7#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714381/14410_7#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#24 ERR662438 SC_EXP_13710_2#50 196 e65494e2fb0ae7970725473eecc80628;ab41fd188285f2364d3921993280ae0d 1313 48f995793f75673cf6059397360fa991;039f8c2bc40a73a9c1ac69d4dae96811 SAMEA2521733 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662438/ERR662438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662438/ERR662438_2.fastq.gz 4992164 WGS 2012216057-sc-1947026 RANDOM 169038447;176844347 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662438/ERR662438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662438/ERR662438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662438/13710_2#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662438/13710_2#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662438/ERR662438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662438/ERR662438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662438/13710_2#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662438/13710_2#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 296185252;7955 ERS455273 ERX618714 GENOMIC 11100457 499216400 2014-10-28 SC_RUN_13710_2#50 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662438/13710_2#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662438/13710_2#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#50 ERR568628 SC_EXP_12837_3#24 231 665c70c0f4bdb9ac162c4484f7be0004;5cac5e731e55eaf60bca97039e4e58c0 1313 730a777d61d918f9d466c49bddd1dd11;1d914804a0d6c3d266c38dbe7704a8f2 SAMEA2434612 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568628/ERR568628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568628/ERR568628_2.fastq.gz 5125746 WGS SA_GPS_SP507-sc-1895677 RANDOM 166356613;169660587 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568628/ERR568628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568628/ERR568628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568628/12837_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568628/12837_3#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568628/ERR568628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568628/ERR568628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568628/12837_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568628/12837_3#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278428596;8450 ERS428789 ERX527617 GENOMIC 9986376 512574600 2014-07-23 SC_RUN_12837_3#24 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568628/12837_3#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568628/12837_3#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#24 ERR461259 SC_EXP_11860_7#70 206 7f83a016322635c302e48a5d3b90c309;d63f13da662d034e6f028825616f6b14 1313 2f305dfbf8db9b5f258728eba8486acf;4a2b12af72f68b96daa7574d0ad53c90 SAMEA2239109 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461259/ERR461259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461259/ERR461259_2.fastq.gz 4100338 WGS 2000157-sc-2013-11-05T12:08:04Z-1750479 RANDOM 132108319;135951018 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461259/ERR461259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461259/ERR461259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461259/11860_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461259/11860_7#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461259/ERR461259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461259/ERR461259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461259/11860_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461259/11860_7#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 219249311;6647 ERS367921 ERX427600 GENOMIC 9014944 410033800 2014-03-18 SC_RUN_11860_7#70 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461259/11860_7#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461259/11860_7#70.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#70 ERR461491 SC_EXP_11861_2#24 216 0423a8af8334f7fad8ea7f88619e0b7c;6cd6648a83165fcda403e4f6315e9869 1313 b211db7416f87a1546468426e7690e48;0d9fd796c53d266c2bfcb30c3877352d SAMEA2238685 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461491/ERR461491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461491/ERR461491_2.fastq.gz 5472824 WGS 2092064-sc-2013-11-05T12:00:41Z-1750047 RANDOM 172246766;181009124 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461491/ERR461491_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461491/ERR461491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461491/11861_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461491/11861_2#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461491/ERR461491_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461491/ERR461491_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461491/11861_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461491/11861_2#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 290688811;8976 ERS367497 ERX427832 GENOMIC 9020940 547282400 2014-03-18 SC_RUN_11861_2#24 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461491/11861_2#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461491/11861_2#24.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461248 SC_EXP_11860_7#59 206 65ccf0058e5e43af40abb97b000182c3;87b7b987fd0bbe8edab9a9d91d285619 1313 0c4161b03a26cb6cfda4635dde4a1a42;1621afcec3f3396fa7d879cc6fbe37f2 SAMEA2239098 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461248/ERR461248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461248/ERR461248_2.fastq.gz 4093676 WGS 992090-sc-2013-11-05T12:07:53Z-1750468 RANDOM 132777763;139488599 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461248/ERR461248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461248/ERR461248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461248/11860_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461248/11860_7#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461248/ERR461248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461248/ERR461248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461248/11860_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461248/11860_7#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 223571035;6668 ERS367910 ERX427589 GENOMIC 9014907 409367600 2014-03-18 SC_RUN_11860_7#59 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461248/11860_7#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461248/11860_7#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR069716 SC_EXP_6999_2#11 244 3928c481216813c57e9a0c91855f2cfc 1313 31dcabbdae8c5aa82d9a456050a87fcb;f711051df6e3df6df6da7ed9786ebbc2 SAMEA1032554 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069716/ERR069716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069716/ERR069716_2.fastq.gz 4367196 WGS 3217-sc-2011-08-01T09:44:46Z-1250087 RANDOM 248306180;247952964 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069716/ERR069716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069716/ERR069716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069716/6999_2#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069716/ERR069716_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069716/ERR069716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069716/6999_2#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 639924367 ERS044022 ERX047569 GENOMIC 3736936 655079400 2012-01-19 SC_RUN_6999_2#11 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069716/6999_2#11.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR340865 SC_EXP_10208_2#49 215 3d93e772ab28043e471a12b768f3e031 1313 9a2488ef12677a1e5e0ede613f0a7689;efb4082b55dbf26616801e79c44171b2 SAMEA2057562 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340865/ERR340865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340865/ERR340865_2.fastq.gz 3028500 WGS PBCN0452-sc-2013-03-27T13:21:22Z-1603761 RANDOM 202785948;231181483 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340865/ERR340865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340865/ERR340865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340865/10208_2#49.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340865/ERR340865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340865/ERR340865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340865/10208_2#49.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 592331430 ERS225894 ERX313714 GENOMIC 7400583 605700000 2013-09-16 SC_RUN_10208_2#49 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340865/10208_2#49.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#49 ERR047953 SC_EXP_6630_1#12 215 f122d6321920deffd4171520d68abfbd 1313 6d519024db576104bc7acdebddb6d3a9;9e9f9f8caadbff888a307d9bada1577b SAMEA1023926 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047953/ERR047953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047953/ERR047953_2.fastq.gz 3208557 WGS SMRU276-sc-2011-01-27-1060465 RANDOM 199249707;204390812 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047953/ERR047953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047953/ERR047953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047953/6630_1#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047953/ERR047953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047953/ERR047953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047953/6630_1#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 508713201 ERS019434 ERX025016 GENOMIC 2952063 481283550 2011-10-11 SC_RUN_6630_1#12 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047953/6630_1#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR069701 SC_EXP_6999_1#19 243 09c3feef3c6815a66dfc4c045b6d3476 1313 e42b542f9e2cbf5619b7dd7cdb50399d;0b41f70c9e267ecdf69e11b227b53d4a SAMEA1032612 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069701/ERR069701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069701/ERR069701_2.fastq.gz 5423277 WGS 3202-sc-2011-08-01T09:44:37Z-1250072 RANDOM 315115515;308769626 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069701/ERR069701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069701/ERR069701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069701/6999_1#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069701/ERR069701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069701/ERR069701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069701/6999_1#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 793061997 ERS044007 ERX047554 GENOMIC 3736920 813491550 2012-01-19 SC_RUN_6999_1#19 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069701/6999_1#19.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR050070 SC_EXP_6680_8#15 230 93de59bcde1bfe24bd8367d9d4556084 1313 c7dc36d367c146cb20823678fc00b8a5;6698a653e30d7d54bc2fec592bd0c805 SAMEA1023953 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050070/ERR050070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050070/ERR050070_2.fastq.gz 6265613 WGS SMRU207-sc-2011-01-27-1060396 RANDOM 349717909;368810341 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050070/ERR050070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050070/ERR050070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050070/6680_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050070/ERR050070_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050070/ERR050070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050070/6680_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 908130199 ERS019365 ERX027130 GENOMIC 2950540 939841950 2011-10-25 SC_RUN_6680_8#15 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050070/6680_8#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR316893 SC_EXP_9789_5#49 239 d8b32d43686a77c113dfe03b7f1b1d42 1313 58d86d2c5b67bdf668db7f209e759744;9a1995ad3e1b2571dd7185dc04ef8297 SAMEA2052383 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316893/ERR316893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316893/ERR316893_2.fastq.gz 1934767 WGS 2729-sc-2013-02-18T14:47:35Z-1562034 RANDOM 117398835;127631203 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316893/ERR316893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316893/ERR316893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316893/9789_5#49.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316893/ERR316893_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316893/ERR316893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316893/9789_5#49.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 347203465 ERS215248 ERX290041 GENOMIC 7125925 386953400 2013-07-22 SC_RUN_9789_5#49 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316893/9789_5#49.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#49 ERR2090994 SC_EXP_22841_3#73 394 043fce3417834a843cc665433f49edd2;abd210a9d4cc5749ea99e575fc766957 1313 46f02a888962bdca4acb2669fa0fe393;0374b6d172161ce5e828d4415dca7cc7 SAMEA104035848 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090994/ERR2090994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090994/ERR2090994_2.fastq.gz 3185816 WGS c2e40c60-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 69766385;71217204 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090994/ERR2090994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090994/ERR2090994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090994/22841_3#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090994/22841_3#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090994/ERR2090994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090994/ERR2090994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090994/22841_3#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090994/22841_3#73.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 100632838;5272 ERS1699741 ERX2147788 GENOMIC DN483669F:A10 398227000 2017-08-08 SC_RUN_22841_3#73 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090994/22841_3#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090994/22841_3#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#73 ERR2089536 SC_EXP_21999_8#91 446 08201c4eccd438ab17eaa8380ec63066;f8fe11b6267486bcc790aa38cb4fffde 1313 aaba72cc1d28636f9bf256f7a4f55694;38fd42927a144b98a49d7e57fd95c3ad SAMEA104154805 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089536/ERR2089536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089536/ERR2089536_2.fastq.gz 587230 WGS 72fedab0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 12133851;12733343 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089536/ERR2089536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089536/ERR2089536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089536/21999_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089536/21999_8#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089536/ERR2089536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089536/ERR2089536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089536/21999_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089536/21999_8#91.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 15585864;1027 ERS1813823 ERX2146330 GENOMIC DN476960M:C1 73403750 2017-08-08 SC_RUN_21999_8#91 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089536/21999_8#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089536/21999_8#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#91 ERR1795466 SC_EXP_21242_2#135 464 f9e29341b63d47c8c1b2e41b3a0e056e;0f17da4929c50fa5351e3e1a472e8e1a 1313 c844901acd5cd7efde3ad69c2b1395c6;a20e7c09f2cfb66694c794f4d91b0899 SAMEA4388414 2017-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1795466/ERR1795466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1795466/ERR1795466_2.fastq.gz 3575356 WGS 4b941320-5a14-11e6-af69-3c4a9275d6c8 RANDOM 67221444;66397461 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1795466/ERR1795466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/006/ERR1795466/ERR1795466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795466/21242_2#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795466/21242_2#135.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/006/ERR1795466/ERR1795466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/006/ERR1795466/ERR1795466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795466/21242_2#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795466/21242_2#135.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 97468934;5910 ERS1299863 ERX1859196 GENOMIC DN466023V:C8 446919500 2017-01-16 SC_RUN_21242_2#135 89 fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1795466/21242_2#135.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1795466/21242_2#135.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA789533 21242_2#135 ERR1788445 SC_EXP_21127_2#60 451 4429650f12abffdd012c357e3b96e350;953983396fc34d5363c4c2985d522f75 1313 336e3034d31cdfb9bce5f392fece46bc;89a9f7ee24557261faf75fe7f2bf9d3c SAMEA4388056 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788445/ERR1788445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788445/ERR1788445_2.fastq.gz 2850998 WGS 407e8ce0-5a14-11e6-af69-3c4a9275d6c8 RANDOM 60776357;59039147 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788445/ERR1788445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788445/ERR1788445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788445/21127_2#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788445/21127_2#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788445/ERR1788445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788445/ERR1788445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788445/21127_2#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788445/21127_2#60.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86205164;4765 ERS1299505 ERX1852168 GENOMIC DN465286P:D8 356374750 2017-01-11 SC_RUN_21127_2#60 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788445/21127_2#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788445/21127_2#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#60 ERR1065660 SC_EXP_17150_4#21 458 0c386c814187316c04cf412b77dc2348;a4df26128c392b2b73a4a9b02736e3c4 1313 556a4c25200f4d689f92477156a659bb;d7e86c355a4b1e2f485ffebab6357778 SAMEA3353571 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065660/ERR1065660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065660/ERR1065660_2.fastq.gz 5309254 WGS GPS_ZA_carriage_SP1537-sc-2278173 RANDOM 107449374;103893787 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065660/ERR1065660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065660/ERR1065660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065660/17150_4#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065660/17150_4#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065660/ERR1065660_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065660/ERR1065660_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065660/17150_4#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065660/17150_4#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 162823479;8718 ERS707926 ERX1145810 GENOMIC 14436444 663656750 2015-10-13 SC_RUN_17150_4#21 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065660/17150_4#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065660/17150_4#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#21 ERR1065141 SC_EXP_17059_6#30 444 a4def82211557314744e2b9f4949eb8c;3dd2ba06ca7be7b07f5f2329efe77591 1313 caa7eafb1c7ee4e33f2fb3a334d4684a;f0ee34ea22c275c5f45c7bf08ef7e93e SAMEA3353219 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065141/ERR1065141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065141/ERR1065141_2.fastq.gz 5558760 WGS GPS_ZA_carriage_SP1170-sc-2277817 RANDOM 104854586;110996372 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065141/ERR1065141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065141/ERR1065141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065141/17059_6#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065141/17059_6#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065141/ERR1065141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065141/ERR1065141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065141/17059_6#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065141/17059_6#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 179459980;9075 ERS707574 ERX1145291 GENOMIC 14397956 694845000 2015-10-13 SC_RUN_17059_6#30 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065141/17059_6#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065141/17059_6#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#30 ERR980207 SC_EXP_16288_7#6 201 00d99605e48f0c0974318bcf384a542e;a8da299b7e0f4fb7f48847d894739d55 1313 d4fab64101e61d03b6d0588d4f50ed20;8221a0dd52ab08517d41fa7d3c1dc969 SAMEA3232681 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980207/ERR980207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980207/ERR980207_2.fastq.gz 5612642 WGS GPS_NP_1156-sc-2205600 RANDOM 186178462;181901266 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980207/ERR980207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980207/ERR980207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980207/16288_7#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980207/16288_7#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980207/ERR980207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980207/ERR980207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980207/16288_7#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980207/16288_7#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301178256;9122 ERS653892 ERX1057079 GENOMIC 13304063 561264200 2015-08-12 SC_RUN_16288_7#6 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980207/16288_7#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980207/16288_7#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#6 ERR980053 SC_EXP_16288_5#14 218 78ffc905c6e0c7cffda567a055efc359;3f2a142c56e424ce6d352ebc56043443 1313 16d75a12f1d5f8a58e87a04be7311cc0;56ab3d28e69602e4c084c58d2cbe1334 SAMEA3232523 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980053/ERR980053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980053/ERR980053_2.fastq.gz 5462752 WGS GPS_NP_4100-sc-2205441 RANDOM 186784419;185568072 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980053/ERR980053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980053/ERR980053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980053/16288_5#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980053/16288_5#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980053/ERR980053_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980053/ERR980053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980053/16288_5#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980053/16288_5#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302599998;8765 ERS653734 ERX1056925 GENOMIC 13296391 546275200 2015-08-12 SC_RUN_16288_5#14 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980053/16288_5#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980053/16288_5#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#14 ERR884384 SC_EXP_15682_1#86 218 cfdbc0cfcc50e7229029cdcfb84341ed;9a57f353bebc51df34fb757b3af36b1a 1313 b0d5b2800f6d37b66ac331678acff25b;186ccdc5b651f510d2290fe4e885a94d SAMEA3176091 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884384/ERR884384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884384/ERR884384_2.fastq.gz 3865930 WGS GPS_PL_1336_11-sc-2191148 RANDOM 126649666;130633971 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884384/ERR884384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884384/ERR884384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884384/15682_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884384/15682_1#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884384/ERR884384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884384/ERR884384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884384/15682_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884384/15682_1#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 209186059;6303 ERS629039 ERX963787 GENOMIC 13029574 386593000 2015-05-21 SC_RUN_15682_1#86 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884384/15682_1#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884384/15682_1#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#86 ERR884374 SC_EXP_15682_1#76 218 4a53ea247e3f0690ffe1207f52cbf7d8;cfcbc76d451b7e320eb14ed18fdecf1e 1313 06596c5a6eac40d3b50f9134e36772cb;214b2871a5393fa8996265affcc1fad4 SAMEA3176077 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884374/ERR884374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884374/ERR884374_2.fastq.gz 4267318 WGS GPS_PL_430_11-sc-2191134 RANDOM 137772669;142006119 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884374/ERR884374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884374/ERR884374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884374/15682_1#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884374/15682_1#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884374/ERR884374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884374/ERR884374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884374/15682_1#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884374/15682_1#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226901559;6944 ERS629025 ERX963777 GENOMIC 13029549 426731800 2015-05-21 SC_RUN_15682_1#76 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884374/15682_1#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884374/15682_1#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#76 ERR884426 SC_EXP_15682_2#33 211 d4890591f395045751ee51c9060da34e;ee3422667847eb26d10e2433349ef2b9 1313 0309659e1b28fce0a62aae00bc8032d4;7a030f481743b318c24429ebe3c67bf9 SAMEA3176148 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884426/ERR884426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884426/ERR884426_2.fastq.gz 5272448 WGS GPS_PL_6051_12-sc-2191207 RANDOM 167751220;172779589 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884426/ERR884426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884426/ERR884426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884426/15682_2#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884426/15682_2#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884426/ERR884426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884426/ERR884426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884426/15682_2#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884426/15682_2#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 275865704;8575 ERS629096 ERX963829 GENOMIC 13029605 527244800 2015-05-21 SC_RUN_15682_2#33 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884426/15682_2#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884426/15682_2#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_2#33 ERR876464 SC_EXP_15608_2#34 215 28bd698a6fb2725a128e592c84322384;34812c22114196fe313c64cdef006df2 1313 44578d86fdb9e58f8eb5ab3a6d201aac;462b6cfc8bab72f8e564e627d287b762 SAMEA3175679 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876464/ERR876464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876464/ERR876464_2.fastq.gz 4454272 WGS GPS_US_5265_98_R1-sc-2190728 RANDOM 136366028;140932265 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876464/ERR876464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876464/ERR876464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876464/15608_2#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876464/15608_2#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876464/ERR876464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876464/ERR876464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876464/15608_2#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876464/15608_2#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222991176;7197 ERS628627 ERX956027 GENOMIC 13024181 445427200 2015-05-12 SC_RUN_15608_2#34 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876464/15608_2#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876464/15608_2#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#34 ERR876551 SC_EXP_15608_3#26 211 010bfa86f4451b507268b2cb48101e8b;23cbafd91cb95cd34c1a62291c4fac0b 1313 adca045e6cc285688a9ac496bf498014;e678277e56698fa734486909205f4e8f SAMEA3175779 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876551/ERR876551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876551/ERR876551_2.fastq.gz 5059932 WGS GPS_US_3334_99_R1-sc-2190816 RANDOM 156205324;160987884 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876551/ERR876551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876551/ERR876551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876551/15608_3#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876551/15608_3#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876551/ERR876551_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876551/ERR876551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876551/15608_3#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876551/15608_3#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 254808169;8187 ERS628727 ERX956114 GENOMIC 13024277 505993200 2015-05-12 SC_RUN_15608_3#26 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876551/15608_3#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876551/15608_3#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_3#26 ERR862464 SC_EXP_15378_4#16 205 e16ff92da95e979082b733c9ecfd6a92;7e1296793e577d7ed57be51d919cca90 1313 7d7d5d037cf96f32e22ef013a5cfa078;ed45b5275e68362ba12d4882b2a1a8d4 SAMEA3171148 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862464/ERR862464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862464/ERR862464_2.fastq.gz 3976548 WGS GPS_MW_2649-sc-2139711 RANDOM 129884859;133719810 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862464/ERR862464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862464/ERR862464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862464/15378_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862464/15378_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862464/ERR862464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862464/ERR862464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862464/15378_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862464/15378_4#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 212830651;6524 ERS625539 ERX942114 GENOMIC 12826950 397654800 2015-04-21 SC_RUN_15378_4#16 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862464/15378_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862464/15378_4#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#16 ERR774690 SC_EXP_14936_6#32 220 1509f82c2aec925d83643f4585c22e18;66ed5aca84053581a9b4fb51a4ed682b 1313 577a48c2dd921fa02eea768a97f3dc4e;a422ede469be4058cdd42454d1617120 SAMEA2783832 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774690/ERR774690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774690/ERR774690_2.fastq.gz 5025436 WGS GPS_MW_C11571_R1-sc-2022328 RANDOM 180193944;180844158 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774690/ERR774690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774690/ERR774690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774690/14936_6#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774690/14936_6#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774690/ERR774690_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774690/ERR774690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774690/14936_6#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774690/14936_6#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 296696860;8068 ERS553577 ERX717569 GENOMIC 12318531 502543600 2015-03-03 SC_RUN_14936_6#32 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774690/14936_6#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774690/14936_6#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_6#32 ERR751139 SC_EXP_14723_6#37 216 59d8c35d454605f52bfc53ab0bb05b27;e0e89cf29182d51141d7968ffbf105a4 1313 47f361d6eafc5b061e1780278328740c;35c7b6d8334d6958fd741a00e1090507 SAMEA2797433 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751139/ERR751139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751139/ERR751139_2.fastq.gz 5977118 WGS GPS_US_PATH5607-sc-2139425 RANDOM 219483058;222839073 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751139/ERR751139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751139/ERR751139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751139/14723_6#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751139/14723_6#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751139/ERR751139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751139/ERR751139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751139/14723_6#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751139/14723_6#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 366663857;9576 ERS559044 ERX694821 GENOMIC 12134030 597711800 2015-02-03 SC_RUN_14723_6#37 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751139/14723_6#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751139/14723_6#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_6#37 ERR774474 SC_EXP_14936_4#1 220 18940538605c281625312542a3d7ad3e;30fac8e2db74581f33a09116b4e40e1c 1313 604a1505e499840399554a53093b30dc;e7f5c46fe066ce144a598b12a3fcc5bb SAMEA2814306 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774474/ERR774474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774474/ERR774474_2.fastq.gz 4902334 WGS GPS_ZA_2518-sc-2138100 RANDOM 178261872;178325138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774474/ERR774474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774474/ERR774474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774474/14936_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774474/14936_4#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774474/ERR774474_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774474/ERR774474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774474/14936_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774474/14936_4#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297935449;7945 ERS566674 ERX717353 GENOMIC 12347918 490233400 2015-03-03 SC_RUN_14936_4#1 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774474/14936_4#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774474/14936_4#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#1 ERR742358 SC_EXP_14673_1#28 214 8b0e25e0ecf25d41acad9e2137d8eeca;92b21f5e75c953631d7ce37f53d29390 1313 3d7deff4b271bee9fdb40d3743c517c5;48723b13088c52a3d99d7105f453787c SAMEA2796436 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742358/ERR742358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742358/ERR742358_2.fastq.gz 5021308 WGS GPS_US_8724_03-sc-2138415 RANDOM 159624741;164258901 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742358/ERR742358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742358/ERR742358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742358/14673_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742358/14673_1#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742358/ERR742358_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742358/ERR742358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742358/14673_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742358/14673_1#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261879061;8080 ERS558047 ERX686041 GENOMIC 12061717 502130800 2015-01-27 SC_RUN_14673_1#28 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742358/14673_1#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742358/14673_1#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#28 ERR742651 SC_EXP_14673_4#55 209 f2cbb0503a1c01f6f8b29769a83fc43e;eca17e07493984b14582afa76bc34bef 1313 78dc0bec2f65f8c74ffd74a3f06a041e;85b9771ec1a1b09322271af30b5fc3d8 SAMEA2796748 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742651/ERR742651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742651/ERR742651_2.fastq.gz 5232298 WGS GPS_US_2010205394_R1-sc-2138732 RANDOM 167591217;172094104 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742651/ERR742651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742651/ERR742651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742651/14673_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742651/14673_4#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742651/ERR742651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742651/ERR742651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742651/14673_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742651/14673_4#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276062973;8500 ERS558359 ERX686334 GENOMIC 12062047 523229800 2015-01-27 SC_RUN_14673_4#55 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742651/14673_4#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742651/14673_4#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#55 ERR742560 SC_EXP_14673_3#59 214 075da8e87a4e73bc29241b3e87bc10f4;0dc461ef1f125ab133c8f1247cfad3c7 1313 05ce50086a3f11f7299054925cb6e6c3;f6531058e0f036da9af9b3fa4b416a11 SAMEA2796657 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742560/ERR742560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742560/ERR742560_2.fastq.gz 5074494 WGS GPS_US_5153_03-sc-2138638 RANDOM 162305287;167502084 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742560/ERR742560_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742560/ERR742560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742560/14673_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742560/14673_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742560/ERR742560_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742560/ERR742560_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742560/14673_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742560/14673_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267677760;8173 ERS558268 ERX686243 GENOMIC 12061903 507449400 2015-01-27 SC_RUN_14673_3#59 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742560/14673_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742560/14673_3#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#59 ERR730653 SC_EXP_14555_4#83 208 08f0c971fa613e2f0dd28cdc0114f58b;aa9cb691b38ec46f4db802032ca57fcf 1313 d4cae3ac2ec93c14829a5387f284c224;c8562cca140c37107afdcdc8263207e0 SAMEA2659083 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730653/ERR730653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730653/ERR730653_2.fastq.gz 4492938 WGS GPS_ZA_2125-sc-2021720 RANDOM 133747023;137458487 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730653/ERR730653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730653/ERR730653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730653/14555_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730653/14555_4#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730653/ERR730653_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730653/ERR730653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730653/14555_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730653/14555_4#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 221324152;7412 ERS509111 ERX674599 GENOMIC 11814934 449293800 2015-01-14 SC_RUN_14555_4#83 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730653/14555_4#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730653/14555_4#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#83 ERR730596 SC_EXP_14555_3#78 227 aa900cc179074086a00c144889cec1cc;83b3ba7b7fce129e98c6b1f41881bca7 1313 5d0d2dc931f4396b27f680e889db2e5e;c6f480bc39495707487ca8ce0d4cda94 SAMEA2658482 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730596/ERR730596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730596/ERR730596_2.fastq.gz 4576950 WGS GPS_ZA_1360-sc-2021087 RANDOM 149225190;154098967 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730596/ERR730596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730596/ERR730596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730596/14555_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730596/14555_3#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730596/ERR730596_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730596/ERR730596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730596/14555_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730596/14555_3#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249459148;7543 ERS508510 ERX674542 GENOMIC 11820751 457695000 2015-01-14 SC_RUN_14555_3#78 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730596/14555_3#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730596/14555_3#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#78 ERR730377 SC_EXP_14520_6#49 215 8e028a8915c321ee14aef199ed836cf8;fc014c078253363e77e6efbddd5ff5f9 1313 9f9d72041bd579b6262f7caac88a3a59;92010660ac7fc0acad14f596fe998650 SAMEA2696503 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730377/ERR730377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730377/ERR730377_2.fastq.gz 5838290 WGS GPS_GM_0757-sc-2021958 RANDOM 210695135;215027720 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730377/ERR730377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730377/ERR730377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730377/14520_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730377/14520_6#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730377/ERR730377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730377/ERR730377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730377/14520_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730377/14520_6#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 351425051;9658 ERS525082 ERX674323 GENOMIC 11983293 583829000 2015-01-14 SC_RUN_14520_6#49 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730377/14520_6#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730377/14520_6#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#49 ERR730756 SC_EXP_14566_4#91 236 e054338ab0c48eccb0578168f7d12924;36b7dbbd7ae883a2449346660e6bed88 1313 9071f8ba936ad08b7c131e1a0dd8009a;5661a32dd69d9226bd7cb0b24e7ba490 SAMEA2658751 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730756/ERR730756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730756/ERR730756_2.fastq.gz 4782788 WGS GPS_ZA_1658-sc-2021359 RANDOM 144611720;149595437 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730756/ERR730756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730756/ERR730756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730756/14566_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730756/14566_4#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730756/ERR730756_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730756/ERR730756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730756/14566_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730756/14566_4#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239687666;7790 ERS508779 ERX674702 GENOMIC 11911772 478278800 2015-01-14 SC_RUN_14566_4#91 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730756/14566_4#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730756/14566_4#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#91 ERR662345 SC_EXP_13710_1#29 186 81294c116785408a10183894ca849753;337d4fe14b075365ca9bbd32c302dbd6 1313 f4a69b7e515e417e74d20a1d63a2ad36;36c9d2a180885ba782c32662f76ac150 SAMEA2521802 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662345/ERR662345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662345/ERR662345_2.fastq.gz 9190612 WGS 2013205799-sc-1947096 RANDOM 294490154;305112739 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662345/ERR662345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662345/ERR662345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662345/13710_1#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662345/13710_1#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662345/ERR662345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662345/ERR662345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662345/13710_1#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662345/13710_1#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 506031573;14680 ERS455342 ERX618621 GENOMIC 11100393 919061200 2014-10-28 SC_RUN_13710_1#29 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662345/13710_1#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662345/13710_1#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#29 ERR646578 SC_EXP_13470_1#49 235 8f4e81d15af2956aa8ba25bc5723e395;f1212ae68bb6bb13ba8ca1a53cfb39bd 1313 ac45dbf6310667ca10ab3a4691de2228;7bc50b66c9bb9829dad5095b18794f05 SAMEA2554352 2014-10-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646578/ERR646578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646578/ERR646578_2.fastq.gz 5849178 WGS GPS_ZA_1241-sc-1951391 RANDOM 198833324;202203821 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646578/ERR646578_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646578/ERR646578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646578/13470_1#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646578/13470_1#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646578/ERR646578_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646578/ERR646578_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646578/13470_1#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646578/13470_1#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 335041420;9621 ERS464853 ERX603014 GENOMIC 10615508 584917800 2014-10-01 SC_RUN_13470_1#49 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646578/13470_1#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646578/13470_1#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA363825 13470_1#49 ERR714676 SC_EXP_14412_2#44 223 851b02e3568b3bc660c0f79e0f1ee2c1;542306cd2d3a4be8b20580912cbec774 1313 359528aa52e5b1d57f93442751a82670;946514bd6b09711f42afbac7aef8cf83 SAMEA2658856 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714676/ERR714676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714676/ERR714676_2.fastq.gz 4888076 WGS GPS_ZA_1896-sc-2021493 RANDOM 170723259;173334117 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714676/ERR714676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714676/ERR714676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714676/14412_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714676/14412_2#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714676/ERR714676_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714676/ERR714676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714676/14412_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714676/14412_2#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282269907;7961 ERS508884 ERX658598 GENOMIC 11882996 488807600 2015-01-08 SC_RUN_14412_2#44 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714676/14412_2#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714676/14412_2#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#44 ERR730928 SC_EXP_14566_6#73 237 c8b59ad28b5f27abfe435e645b63f80e;351a31c3e41d76fec37c43c459738e55 1313 a78acb20b63ed0057ffc188bbe466fe0;9ff79f956d09afe985ebd37509141592 SAMEA2659043 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730928/ERR730928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730928/ERR730928_2.fastq.gz 5652714 WGS GPS_ZA_2020-sc-2021681 RANDOM 170528121;176631089 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730928/ERR730928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730928/ERR730928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730928/14566_6#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730928/14566_6#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730928/ERR730928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730928/ERR730928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730928/14566_6#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730928/14566_6#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283640745;9212 ERS509071 ERX674874 GENOMIC 11887109 565271400 2015-01-14 SC_RUN_14566_6#73 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730928/14566_6#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730928/14566_6#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#73 ERR632985 SC_EXP_13415_7#56 225 760a8c1cc807badfac6fb1fb1ccc3a65;aadc671e4452315af9981e032a71380c 1313 dfb817645d4e33f1fdc4e08319138ca9;07e39d4cc331e78ac832ed730289adff SAMEA2554167 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632985/ERR632985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632985/ERR632985_2.fastq.gz 4887358 WGS GPS_ZA_1056-sc-1951204 RANDOM 163985174;169016939 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632985/ERR632985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632985/ERR632985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632985/13415_7#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632985/13415_7#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632985/ERR632985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632985/ERR632985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632985/13415_7#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632985/13415_7#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273854619;8079 ERS464668 ERX589539 GENOMIC 10646377 488735800 2014-09-23 SC_RUN_13415_7#56 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632985/13415_7#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632985/13415_7#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#56 ERR600095 SC_EXP_13414_1#21 292 5bec94618fa4283d07b2ac5b705955fe;d2a35f775587178ea6f7b945277f0440 1313 2189606f7a74fea25426623fd5d594e8;cdda7ca0fd63e2168c3ff071e3046b44 SAMEA2521471 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600095/ERR600095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600095/ERR600095_2.fastq.gz 6555284 WGS 2009218379-sc-1946768 RANDOM 219923514;225941326 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600095/ERR600095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600095/ERR600095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600095/13414_1#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600095/13414_1#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600095/ERR600095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600095/ERR600095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600095/13414_1#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600095/13414_1#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 372429150;10833 ERS455011 ERX556924 GENOMIC 10524159 655528400 2014-09-16 SC_RUN_13414_1#21 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600095/13414_1#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600095/13414_1#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#21 ERR563798 SC_EXP_12754_2#44 209 ef4e1f994f1da78c881f0ce12834b19a;9bbb0170d8173cc351ff80ecda2739e0 1313 d9f486c97b429bb0b0f7ea11ff66cef8;8f2b18d5c8fb6f0dfb5db66959f3d2cd SAMEA2383064 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563798/ERR563798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563798/ERR563798_2.fastq.gz 5027576 WGS 2093090_II-sc-1870314 RANDOM 171001639;175998055 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563798/ERR563798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563798/ERR563798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563798/12754_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563798/12754_2#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563798/ERR563798_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563798/ERR563798_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563798/12754_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563798/12754_2#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 285624410;8239 ERS409389 ERX522823 GENOMIC 9918608 502757600 2014-07-16 SC_RUN_12754_2#44 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563798/12754_2#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563798/12754_2#44.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#44 ERR570395 SC_EXP_12837_4#82 226 6bd73ab11c2a2b0fed1886e38a09a9a9;b28e24eb415f8179a82dade476c103bc 1313 f3b12a3a17f1790f658fffaa297c5c51;e274c679bc7934fd409d3b410158a334 SAMEA2434758 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570395/ERR570395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570395/ERR570395_2.fastq.gz 5441402 WGS SA_GPS_SP653-sc-1895824 RANDOM 189962787;197908378 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570395/ERR570395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570395/ERR570395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570395/12837_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570395/12837_4#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570395/ERR570395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570395/ERR570395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570395/12837_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570395/12837_4#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 323423442;8887 ERS428935 ERX529384 GENOMIC 9986215 544140200 2014-07-28 SC_RUN_12837_4#82 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570395/12837_4#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570395/12837_4#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_4#82 ERR563763 SC_EXP_12754_2#9 209 9b8f80cf0e48f199193b583ca0e8d649;ef2c58d94b17606532e857a735f7cb2e 1313 e672e3ea1303eb77af6b82aaeff3eceb;4e1376be97457773ec1698f0230f6d18 SAMEA2383029 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563763/ERR563763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563763/ERR563763_2.fastq.gz 4708674 WGS 2090521_II-sc-1870279 RANDOM 158747703;163135770 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563763/ERR563763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563763/ERR563763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563763/12754_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563763/12754_2#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563763/ERR563763_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563763/ERR563763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563763/12754_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563763/12754_2#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 265767990;7782 ERS409354 ERX522788 GENOMIC 9918568 470867400 2014-07-16 SC_RUN_12754_2#9 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563763/12754_2#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563763/12754_2#9.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#9 ERR563695 SC_EXP_12754_1#36 223 7fa1dcc8ab19bca5693243afa955bd7c;773dabad57253793c06eb9619cbd7dfa 1313 854326fa25ff6df5a9dcfec3b14468bf;c5149d4fec64585ad84b70ac5b94162e SAMEA2382961 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563695/ERR563695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563695/ERR563695_2.fastq.gz 4866512 WGS 2080565_II-sc-1870210 RANDOM 159948871;165231848 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563695/ERR563695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563695/ERR563695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563695/12754_1#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563695/12754_1#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563695/ERR563695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563695/ERR563695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563695/12754_1#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563695/12754_1#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 267423143;8087 ERS409286 ERX522720 GENOMIC 9918510 486651200 2014-07-16 SC_RUN_12754_1#36 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563695/12754_1#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563695/12754_1#36.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#36 ERR461708 SC_EXP_11861_4#64 224 1cd903a3f5e6335036049186c88c3a0c;e6fecdc4d3709946ceef5eb997f0c1ea 1313 c171c549e323947d79eec08e7f8aed06;7f696790cc85e61a35ec5db27ec7339f SAMEA2239010 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461708/ERR461708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461708/ERR461708_2.fastq.gz 4204298 WGS 982238-sc-2013-11-05T12:06:26Z-1750376 RANDOM 131355103;137972402 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461708/ERR461708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461708/ERR461708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461708/11861_4#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461708/11861_4#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461708/ERR461708_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461708/ERR461708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461708/11861_4#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461708/11861_4#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 221321075;6958 ERS367822 ERX428049 GENOMIC 9016444 420429800 2014-03-18 SC_RUN_11861_4#64 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461708/11861_4#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461708/11861_4#64.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#64 ERR490862 SC_EXP_12169_1#63 224 88681f47d571580a92a947169dcb4680;c977159da9008782cda2399d298dda09 1313 71216ca946172e73ed6f2bb1f54f9fc2;83c17f23547c568c0ca4b38684a99a3e SAMEA2298245 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490862/ERR490862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490862/ERR490862_2.fastq.gz 2608258 WGS SA_GPS_SP179-sc-1810455 RANDOM 72817406;75065695 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490862/ERR490862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490862/ERR490862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490862/12169_1#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490862/12169_1#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490862/ERR490862_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490862/ERR490862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490862/12169_1#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490862/12169_1#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 119625356;4366 ERS390703 ERX456316 GENOMIC 9367915 260825800 2014-04-28 SC_RUN_12169_1#63 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490862/12169_1#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490862/12169_1#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12291_6#63 ERR505954 SC_EXP_12291_6#63 219 8769f3503f3abfbac34261d66e343526;a1393386257a5cd3b02555c7b69be9e8 1313 9cf7d99520b57c095d79c6d148532fd8;c7676532fbd47d232527c4642526b6d9 SAMEA2298245 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505954/ERR505954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505954/ERR505954_2.fastq.gz 4181908 WGS SA_GPS_SP179-sc-1810455 RANDOM 128055825;133622791 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505954/ERR505954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505954/ERR505954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505954/12291_6#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505954/12291_6#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505954/ERR505954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505954/ERR505954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505954/12291_6#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505954/12291_6#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 215342979;6837 ERS390703 ERX471311 GENOMIC 9367915 418190800 2014-05-19 SC_RUN_12291_6#63 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505954/12291_6#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505954/12291_6#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_6#63 ERR505777 SC_EXP_12291_4#64 230 c8ffbb5ea053b619c75e17adb6d65e98;59774c471a83b96abbecf3f3b3701b87 1313 a0a0fed33eec22340868e9576a66d418;e4326ce84c38629b9d2e12b1793709ef SAMEA2335996 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505777/ERR505777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505777/ERR505777_2.fastq.gz 5308794 WGS 2009203268-sc-1810924 RANDOM 166547943;172451755 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505777/ERR505777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505777/ERR505777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505777/12291_4#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505777/12291_4#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505777/ERR505777_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505777/ERR505777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505777/12291_4#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505777/12291_4#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279091332;8785 ERS394190 ERX471134 GENOMIC 9444733 530879400 2014-05-19 SC_RUN_12291_4#64 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505777/12291_4#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505777/12291_4#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#64 ERR461471 SC_EXP_11861_2#3 216 6389928e9c2d9f341c948218d684d3ee;47292c2466d727a9b05d1f4bf8dc6d43 1313 c9902c91485779860e784901a237ca0b;97ee7188bb72fd7248abb9386ae287e2 SAMEA2238665 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461471/ERR461471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461471/ERR461471_2.fastq.gz 5434740 WGS 2091263-sc-2013-11-05T12:00:19Z-1750027 RANDOM 171311619;179868086 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461471/ERR461471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461471/ERR461471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461471/11861_2#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461471/11861_2#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461471/ERR461471_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461471/ERR461471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461471/11861_2#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461471/11861_2#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 289457635;9010 ERS367477 ERX427812 GENOMIC 9020878 543474000 2014-03-18 SC_RUN_11861_2#3 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461471/11861_2#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461471/11861_2#3.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#3 ERR340828 SC_EXP_10208_2#12 215 1b326c02358b9da3ac49325ff4bfa8cc 1313 a4ed211bec26702146f243e1e3d76b01;59ca78d121ba19afdb72ef5d0d2ea001 SAMEA2060157 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340828/ERR340828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340828/ERR340828_2.fastq.gz 2552566 WGS PBCN0407-sc-2013-03-27T13:20:46Z-1603723 RANDOM 169389997;193034662 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340828/ERR340828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340828/ERR340828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340828/10208_2#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340828/ERR340828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340828/ERR340828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340828/10208_2#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 499699201 ERS225857 ERX313677 GENOMIC 7400614 510513200 2013-09-16 SC_RUN_10208_2#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340828/10208_2#12.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#12 ERR425372 SC_EXP_11511_7#18 224 4c4daec08ed51932dc21c17a421d4b81;020efd68b8dd3c302101c4e9424bcf02 1313 c68746dffb9be2a2426ccd5d3d656609;c161a1a220e08d1469828d42540adf09 SAMEA2151400 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425372/ERR425372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425372/ERR425372_2.fastq.gz 4589272 WGS 4406_03-sc-2013-07-03T13:28:00Z-1659165 RANDOM 147844450;151657232 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425372/ERR425372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425372/ERR425372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425372/11511_7#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425372/11511_7#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425372/ERR425372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425372/ERR425372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425372/11511_7#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425372/11511_7#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245423508;7529 ERS322344 ERX391647 GENOMIC 8520679 458927200 2014-02-10 SC_RUN_11511_7#18 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425372/11511_7#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425372/11511_7#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#18 ERR461396 SC_EXP_11861_1#19 225 cdef9dab0479149d624799fe0e5de602;142bf7aab9568fb4bfe0340f990c4646 1313 f2fcb75e667ac5cda3242b4224a38b9f;c79b42d2a6784cafb47f522d33d0b38f SAMEA2238582 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461396/ERR461396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461396/ERR461396_2.fastq.gz 3646416 WGS 2082170-sc-2013-11-05T11:58:56Z-1749943 RANDOM 115958289;122185697 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461396/ERR461396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461396/ERR461396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461396/11861_1#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461396/11861_1#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461396/ERR461396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461396/ERR461396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461396/11861_1#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461396/11861_1#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 194815695;6017 ERS367394 ERX427737 GENOMIC 9016134 364641600 2014-03-18 SC_RUN_11861_1#19 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461396/11861_1#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461396/11861_1#19.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#19 ERR461467 SC_EXP_11861_1#94 225 a75411cd595a0de9cbbae8a590e6fc11;cb3832c86f2e9c8f9aae802fe0d5a5b7 1313 fa06a7701e1dbf4b4bd7192cfd48e604;b3b46df9251c96fb687e2acf361716ff SAMEA2238660 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461467/ERR461467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461467/ERR461467_2.fastq.gz 5159200 WGS 2091204-sc-2013-11-05T12:00:14Z-1750022 RANDOM 163326976;170156685 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461467/ERR461467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461467/ERR461467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461467/11861_1#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461467/11861_1#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461467/ERR461467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461467/ERR461467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461467/11861_1#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461467/11861_1#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 274495522;8487 ERS367472 ERX427808 GENOMIC 9016179 515920000 2014-03-18 SC_RUN_11861_1#94 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461467/11861_1#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461467/11861_1#94.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#94 ERR063794 SC_EXP_6871_1#9 236 79c1b7dc6789ac7af15421c967dc9eed 1313 4c1b44d81742a2173018747711bc7c65;e9132bae7deb8b2eb1611d7cc294d24c SAMEA1025862 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063794/ERR063794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063794/ERR063794_2.fastq.gz 5705664 WGS SMRU1785-sc-2011-01-27-1061998 RANDOM 352855973;347810886 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063794/ERR063794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063794/ERR063794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063794/6871_1#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063794/ERR063794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063794/ERR063794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063794/6871_1#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 883680629 ERS021295 ERX041767 GENOMIC 3481303 855849600 2012-01-05 SC_RUN_6871_1#9 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063794/6871_1#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054261 SC_EXP_6710_7#16 233 601777e1346319e7071d41e8dd35fb9a 1313 be98bf2181386daafafaa4106b6b6b34;c9febe10d4ff9b420e4f7cdb5feced88 SAMEA1025314 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054261/ERR054261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054261/ERR054261_2.fastq.gz 8416734 WGS SMRU1384-sc-2011-01-27-1061597 RANDOM 473736751;497627570 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054261/ERR054261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054261/ERR054261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054261/6710_7#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054261/ERR054261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054261/ERR054261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054261/6710_7#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1222121300 ERS020894 ERX031307 GENOMIC 3348842 1262510100 2011-11-15 SC_RUN_6710_7#16 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054261/6710_7#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054358 SC_EXP_6736_6#17 247 62cc3f9d387f41b21d7a081a49f13446 1313 7b169f9a825c510dd58e7f9ebb0a45af;05189298c31a9535d70de094d732ceb5 SAMEA1025585 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054358/ERR054358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054358/ERR054358_2.fastq.gz 6684590 WGS SMRU1265-sc-2011-01-27-1061478 RANDOM 351581820;371908395 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054358/ERR054358_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054358/ERR054358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054358/6736_6#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054358/ERR054358_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054358/ERR054358_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054358/6736_6#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 896979072 ERS020775 ERX031404 GENOMIC 3308112 1002688500 2011-11-15 SC_RUN_6736_6#17 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054358/6736_6#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR047895 SC_EXP_6593_4#2 238 98579540721e50b263fa089a7205d7a9 1313 b52a126b58cbabcb889e08b408c9a6f6;7c22e6337f89871e979f2e17e826002a SAMEA1024203 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047895/ERR047895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047895/ERR047895_2.fastq.gz 4577753 WGS SMRU98-sc-2011-01-27-1060287 RANDOM 263017623;281225887 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047895/ERR047895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047895/ERR047895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047895/6593_4#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047895/ERR047895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047895/ERR047895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047895/6593_4#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 700888053 ERS019256 ERX024958 GENOMIC 2882477 686662950 2011-10-11 SC_RUN_6593_4#2 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047895/6593_4#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR049941 SC_EXP_6664_1#6 221 c1806138d3cdf3bd3e1cd2e80a20c462 1313 aeeec418d1e8e7c6f8cda20a92459838;b6d82891f853be01e12e3e871a603ede SAMEA1023694 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049941/ERR049941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049941/ERR049941_2.fastq.gz 9620285 WGS SMRU222-sc-2011-01-27-1060411 RANDOM 547375629;571637947 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049941/ERR049941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049941/ERR049941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049941/6664_1#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049941/ERR049941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049941/ERR049941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049941/6664_1#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1414804816 ERS019380 ERX027001 GENOMIC 2950560 1443042750 2011-10-25 SC_RUN_6664_1#6 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049941/6664_1#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 ERR326745 SC_EXP_9953_7#56 227 909eab581e71dc475a5b6d01ea242b09 1313 91efb07ab43c85029eba1b0a9e38f00b;86bfffc91fc944ad958d3a12c878b172 SAMEA2059730 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326745/ERR326745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326745/ERR326745_2.fastq.gz 2157071 WGS PBCN0231-sc-2013-03-27T13:18:36Z-1603591 RANDOM 148898819;148775299 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326745/ERR326745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326745/ERR326745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326745/9953_7#56.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326745/ERR326745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326745/ERR326745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326745/9953_7#56.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 406143800 ERS225726 ERX299845 GENOMIC 7376882 431414200 2013-08-14 SC_RUN_9953_7#56 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326745/9953_7#56.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#56 ERR316720 SC_EXP_9789_3#58 207 7555328f2bea6a0e6c54e5f745c69d41 1313 1e2cdc67eee441a8bddd63983936a491;1dc89e70890e9d8e5a3d8fede517dc86 SAMEA1972843 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316720/ERR316720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316720/ERR316720_2.fastq.gz 469765 WGS 661-sc-2013-02-18T14:44:09Z-1561850 RANDOM 30647547;33780169 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316720/ERR316720_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316720/ERR316720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316720/9789_3#58.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316720/ERR316720_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316720/ERR316720_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316720/9789_3#58.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85742719 ERS215066 ERX289868 GENOMIC 7066852 93953000 2013-07-22 SC_RUN_9789_3#58 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316720/9789_3#58.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_3#58 ERR316637 SC_EXP_9789_2#66 213 83d6aa75c7b79acff43afbf28fa6fb39 1313 958016e1bccc585599e12dc1e4a152ba;2b15da65af3f83633e4287d278732387 SAMEA2052014 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316637/ERR316637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316637/ERR316637_2.fastq.gz 2775988 WGS D51832-sc-2013-02-18T14:42:36Z-1561761 RANDOM 179917121;198030155 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316637/ERR316637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316637/ERR316637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316637/9789_2#66.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316637/ERR316637_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316637/ERR316637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316637/9789_2#66.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 518773507 ERS214979 ERX289785 GENOMIC 7066756 555197600 2013-07-22 SC_RUN_9789_2#66 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316637/9789_2#66.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#66 ERR2612106 SC_EXP_23164_8#146 400 6784d9c751119f2caf80c3ddc9cc21ab;6d1c3fe362c11e3714c32d83d8a6a0b3 1313 cafe3c51ff5e379957e8f94dfb24fb36;b3f18eaa7b9ede5cf0a2ba4a6fb1937e SAMEA4707889 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612106/ERR2612106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612106/ERR2612106_2.fastq.gz 3452400 WGS bcaaf0e0-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 67391860;71507041 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612106/ERR2612106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612106/ERR2612106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612106/23164_8#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612106/23164_8#146.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/006/ERR2612106/ERR2612106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/006/ERR2612106/ERR2612106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612106/23164_8#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612106/23164_8#146.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 98382849;5672 ERS2528049 ERX2628761 GENOMIC DN488670S:C10 431550000 2018-06-04 SC_RUN_23164_8#146 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612106/23164_8#146.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612106/23164_8#146.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#146 ERR2612105 SC_EXP_23164_8#145 413 dd9d39fa6429cf8c836c0e07dcb88c73;eeaf689164a1481e79ee789633476dac 1313 67db3edef407c778a381170c414cfc04;5faa749a139c426c704ba91d644318d1 SAMEA4707886 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/005/ERR2612105/ERR2612105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/005/ERR2612105/ERR2612105_2.fastq.gz 3115754 WGS bca1f030-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 61573804;66413420 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/005/ERR2612105/ERR2612105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/005/ERR2612105/ERR2612105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612105/23164_8#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612105/23164_8#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/005/ERR2612105/ERR2612105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/005/ERR2612105/ERR2612105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612105/23164_8#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612105/23164_8#145.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90693139;5137 ERS2528046 ERX2628760 GENOMIC DN488670S:B10 389469250 2018-06-04 SC_RUN_23164_8#145 109 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612105/23164_8#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612105/23164_8#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#145 ERR2612066 SC_EXP_23164_8#106 392 1ee08bcc599c349e2d719766e7f58766;c00acfe1068fd07900bec624372730e9 1313 e8eeeea7060ac7b9f236a370a616b7dd;3c4211d33a7aa7751a360374e9251221 SAMEA4707849 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612066/ERR2612066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612066/ERR2612066_2.fastq.gz 3667474 WGS bb173180-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 73234920;77659015 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612066/ERR2612066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/006/ERR2612066/ERR2612066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612066/23164_8#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612066/23164_8#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/006/ERR2612066/ERR2612066_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/006/ERR2612066/ERR2612066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612066/23164_8#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612066/23164_8#106.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 106648656;5908 ERS2528009 ERX2628721 GENOMIC DN488670S:C5 458434250 2018-06-04 SC_RUN_23164_8#106 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612066/23164_8#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612066/23164_8#106.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#106 ERR2091051 SC_EXP_22841_3#130 399 f119ca7d4decc5dbbbcb3c70446537dc;96d6ae974a1d2be34785684d1327476e 1313 8d2f276f732373a9a2307f41a4fa4ce1;9f879e8a508c895fb1480e22de79c819 SAMEA104035908 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091051/ERR2091051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091051/ERR2091051_2.fastq.gz 2798380 WGS c9ab4720-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 61407007;66223869 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091051/ERR2091051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091051/ERR2091051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091051/22841_3#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091051/22841_3#130.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091051/ERR2091051_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091051/ERR2091051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091051/22841_3#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091051/22841_3#130.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90479659;4630 ERS1699801 ERX2147845 GENOMIC DN483670V:E5 349797500 2017-08-08 SC_RUN_22841_3#130 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091051/22841_3#130.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091051/22841_3#130.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#130 ERR2091026 SC_EXP_22841_3#105 396 c84efb8d8c01677aaa96c14be7b527a1;465c5fc0bf5b30e4a609cbac773f6cc5 1313 83aee2e62bba20609aab524983201a75;0ee136019854655810cf06ba68f97741 SAMEA104035883 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091026/ERR2091026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091026/ERR2091026_2.fastq.gz 2873592 WGS c8c44280-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62259435;67110582 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091026/ERR2091026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091026/ERR2091026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091026/22841_3#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091026/22841_3#105.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091026/ERR2091026_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091026/ERR2091026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091026/22841_3#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091026/22841_3#105.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92085455;4757 ERS1699776 ERX2147820 GENOMIC DN483670V:D2 359199000 2017-08-08 SC_RUN_22841_3#105 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091026/22841_3#105.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091026/22841_3#105.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#105 ERR2612048 SC_EXP_23164_8#88 410 b6b2da4992c41b92db65061678fdbb38;44266edfed11396ae74afe3b3998f6e6 1313 e6353c3f8aeea140e44d087bc530e3ca;7789f3101b5b7e0b4da23f00ad11b30f SAMEA4707884 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/008/ERR2612048/ERR2612048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/008/ERR2612048/ERR2612048_2.fastq.gz 3269960 WGS ba62d5a0-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 65126763;68161561 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/008/ERR2612048/ERR2612048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/008/ERR2612048/ERR2612048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612048/23164_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612048/23164_8#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/008/ERR2612048/ERR2612048_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/008/ERR2612048/ERR2612048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612048/23164_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612048/23164_8#88.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 94227224;5361 ERS2528044 ERX2628703 GENOMIC DN488670S:A3 408745000 2018-06-04 SC_RUN_23164_8#88 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612048/23164_8#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612048/23164_8#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#88 ERR2090901 SC_EXP_22841_2#170 387 3745469c0f6dc2afa551262815bf1cae;a18ae924211a82729fc4cac1c39840a2 1313 33d625ae5e68461d1e6093656f2127c4;4c636642dcdeaa60bf07ae96ebf9928d SAMEA104035753 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090901/ERR2090901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090901/ERR2090901_2.fastq.gz 2702260 WGS bb028800-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 59526311;64278411 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090901/ERR2090901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090901/ERR2090901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090901/22841_2#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090901/22841_2#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090901/ERR2090901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090901/ERR2090901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090901/22841_2#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090901/22841_2#170.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88182525;4476 ERS1699646 ERX2147695 GENOMIC DN483654V:C10 337782500 2017-08-08 SC_RUN_22841_2#170 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090901/22841_2#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090901/22841_2#170.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#170 ERR2090709 SC_EXP_22841_1#168 415 2e1acf173338b1cd74d64b721769890e;e6b3de88ad0a40886d7a19a2bc45f935 1313 06beb9b11202d284b5cd6f312062ee90;1ffa83fbcd58b3a921db8ab7c7a7d214 SAMEA104035554 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090709/ERR2090709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090709/ERR2090709_2.fastq.gz 1833260 WGS a9865d90-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 35285615;38150298 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090709/ERR2090709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090709/ERR2090709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090709/22841_1#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090709/22841_1#168.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090709/ERR2090709_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090709/ERR2090709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090709/22841_1#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090709/22841_1#168.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 50669666;3116 ERS1699447 ERX2147503 GENOMIC DN477156T:A10 229157500 2017-08-08 SC_RUN_22841_1#168 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090709/22841_1#168.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090709/22841_1#168.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#168 ERR2090640 SC_EXP_22841_1#99 417 26289f0ead7ecf249f02c85ea385406c;f4c26d46019764f73a056a31938e1fb5 1313 74978dd6b29b835707ff74301a84de78;d9562002dee1e73fdf3d6a3d2d5ed499 SAMEA104035294 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090640/ERR2090640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090640/ERR2090640_2.fastq.gz 3183082 WGS 92198240-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60373729;65077286 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090640/ERR2090640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090640/ERR2090640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090640/22841_1#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090640/22841_1#99.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090640/ERR2090640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090640/ERR2090640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090640/22841_1#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090640/22841_1#99.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88243931;5248 ERS1699187 ERX2147434 GENOMIC DN477156T:D1 397885250 2017-08-08 SC_RUN_22841_1#99 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090640/22841_1#99.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090640/22841_1#99.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#99 ERR2090414 SC_EXP_22667_7#142 427 d277fccebb8f855fe2c0e138019e995e;8a768da3abf709c52333d33d0ce75bfa 1313 48e7d5d464828ac80b367aa0aa149adf;a7f793ca53800010c146c145947e9dbf SAMEA104035138 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090414/ERR2090414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090414/ERR2090414_2.fastq.gz 3043644 WGS 879629e0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 57799427;61683485 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090414/ERR2090414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090414/ERR2090414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090414/22667_7#142.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090414/22667_7#142.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090414/ERR2090414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090414/ERR2090414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090414/22667_7#142.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090414/22667_7#142.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84381498;5054 ERS1699031 ERX2147208 GENOMIC DN486303N:F6 380455500 2017-08-08 SC_RUN_22667_7#142 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090414/22667_7#142.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090414/22667_7#142.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#142 ERR2090584 SC_EXP_22841_1#43 424 76e5a0a46aaf4baab5048bfa84f93631;53cf570fa7fb319a5e890d15c1475679 1313 635c62a5d7db7aba0af8ab43fdcbea0f;2387e2afe6b5d7958cfd2ead0a49a288 SAMEA104035238 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090584/ERR2090584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090584/ERR2090584_2.fastq.gz 2140450 WGS 8fe3dd90-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 42600703;43605554 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090584/ERR2090584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090584/ERR2090584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090584/22841_1#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090584/22841_1#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090584/ERR2090584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090584/ERR2090584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090584/22841_1#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090584/22841_1#43.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 59793460;3610 ERS1699131 ERX2147378 GENOMIC DN477155S:C6 267556250 2017-08-08 SC_RUN_22841_1#43 111 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090584/22841_1#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090584/22841_1#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#43 ERR2089875 SC_EXP_22114_6#87 448 3c14e1b224fb5ba8c1a0f15d078044b3;52a12624ca3be771c064b4d3e0dc2ff1 1313 f9a3e84061b70f812f2744bf283aa964;1ba1e94c139b538782f338525ca6de9b SAMEA104155061 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089875/ERR2089875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089875/ERR2089875_2.fastq.gz 2073480 WGS 90c3b430-c37a-11e6-b158-3c4a9275d6c8 RANDOM 46267367;45473052 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089875/ERR2089875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089875/ERR2089875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089875/22114_6#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089875/22114_6#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089875/ERR2089875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089875/ERR2089875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089875/22114_6#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089875/22114_6#87.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64215967;3502 ERS1814079 ERX2146669 GENOMIC DN478829S:G11 259185000 2017-08-08 SC_RUN_22114_6#87 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089875/22114_6#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089875/22114_6#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#87 ERR1947702 SC_EXP_21946_6#182 438 7fa91a6276f890b295282f0e74cce938;f1315611569a5fdf901930723c011d51 1313 a25d99993d90cd6ffadc75724084ea01;21fb356c0a1ad905ebac9a1022659b2f SAMEA4560997 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947702/ERR1947702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947702/ERR1947702_2.fastq.gz 2162048 WGS 01b4e6e0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 55480181;75934824 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947702/ERR1947702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947702/ERR1947702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947702/21946_6#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947702/21946_6#182.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947702/ERR1947702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947702/ERR1947702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947702/21946_6#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947702/21946_6#182.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 95477788;3645 ERS1460176 ERX2013489 GENOMIC 18471339 326469248 2017-04-25 SC_RUN_21946_6#182 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947702/21946_6#182.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947702/21946_6#182.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1756401 SC_EXP_20925_3#16 440 2f4030711b13ff422560fea21d8b10c5;3db960ebfbe4f69915a8d64f2ef3d66e 1313 8dbcfbd1275bbbabab4f7d8a772633dd;37e230013a41db133bf65b15e7ba18fe SAMEA4035168 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756401/ERR1756401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756401/ERR1756401_2.fastq.gz 5155008 WGS 3a459ba0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 101217221;107234710 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756401/ERR1756401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/001/ERR1756401/ERR1756401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756401/20925_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756401/20925_3#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/001/ERR1756401/ERR1756401_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/001/ERR1756401/ERR1756401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756401/20925_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756401/20925_3#16.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 161055338;8535 ERS1206278 ERX1823421 GENOMIC DN461288B:H2 644376000 2016-12-13 SC_RUN_20925_3#16 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756401/20925_3#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756401/20925_3#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#16 ERR1453597 SC_EXP_19341_2#130 429 ca98deede75bcfda2e322cf04ea93403;207f7864d7315af6e9527a8347c5a671 1313 a8d9f15f6401b77dcc1e8e8a171a5738;7bc0b26d2d7c1b1d4d6701d313e68f76 SAMEA3713972 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453597/ERR1453597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453597/ERR1453597_2.fastq.gz 2801842 WGS 39eaed30-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 54674627;63243073 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453597/ERR1453597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453597/ERR1453597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453597/19341_2#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453597/19341_2#130.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453597/ERR1453597_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453597/ERR1453597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453597/19341_2#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453597/19341_2#130.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84347346;4703 ERS1021121 ERX1524075 GENOMIC 15972601 350230250 2016-06-14 SC_RUN_19341_2#130 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453597/19341_2#130.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453597/19341_2#130.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#130 ERR1202510 SC_EXP_17966_5#60 464 30fd0565c98a79aeb704ad1711e900f1;d9095d7485705bc39a782ed62997c255 1313 4bed3168d9ef102fb6c5abb52caecdf5;6eef97eda344a82cd42c27afacf9a6c9 SAMEA3389948 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202510/ERR1202510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202510/ERR1202510_2.fastq.gz 2000018 WGS GPS_MW_1020012-sc-2296194 RANDOM 38011642;36870598 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202510/ERR1202510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202510/ERR1202510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202510/17966_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202510/17966_5#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202510/ERR1202510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202510/ERR1202510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202510/17966_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202510/17966_5#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 52580079;3342 ERS726051 ERX1274752 GENOMIC 15025498 250002250 2016-01-12 SC_RUN_17966_5#60 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202510/17966_5#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202510/17966_5#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#60 ERR1422416 SC_EXP_19084_7#87 453 5a8923c599b4b39ba9c5d40cd545dfed;3efefc360be13cf648777cad6837bda6 1313 9a1f5829fb2bc30325fbcebba6a1e7dc;83dd49a1385547b15c0a4658b7c49d1a SAMEA3714240 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422416/ERR1422416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422416/ERR1422416_2.fastq.gz 2534484 WGS 4989cc20-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 55497673;56140960 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422416/ERR1422416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422416/ERR1422416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422416/19084_7#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422416/19084_7#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422416/ERR1422416_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422416/ERR1422416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422416/19084_7#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422416/19084_7#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81071133;4267 ERS1021389 ERX1492998 GENOMIC 15738054 316810500 2016-05-24 SC_RUN_19084_7#87 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422416/19084_7#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422416/19084_7#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#87 ERR774290 SC_EXP_14913_7#6 228 d2b013f06f7a6b1e9c9fcf1a744f2588;3270b4303038bd5afe9a2c711002a609 1313 292ef8be3466a5a58330047b690a2a6d;718293840abc447ca6cab2fffe89e8cc SAMEA2814216 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774290/ERR774290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774290/ERR774290_2.fastq.gz 6103434 WGS GPS_ZA_2428-sc-2022703 RANDOM 203725592;213804643 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774290/ERR774290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774290/ERR774290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774290/14913_7#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774290/14913_7#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774290/ERR774290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774290/ERR774290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774290/14913_7#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774290/14913_7#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 343238590;9712 ERS566584 ERX717169 GENOMIC 12357981 610343400 2015-03-03 SC_RUN_14913_7#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774290/14913_7#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774290/14913_7#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#6 ERR1191873 SC_EXP_17794_7#51 458 af5a89f94064de7ff3d50da5bf835330;3623c9548c86c6478a784810466d7f68 1313 ef5d72d75772f8db030f5e9b2ac41814;d7db7f1cd2bc6132b3a0afdd555d9cac SAMEA3388893 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191873/ERR1191873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191873/ERR1191873_2.fastq.gz 2232986 WGS GPS_MA_127-sc-2279550 RANDOM 45792041;44655745 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191873/ERR1191873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191873/ERR1191873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191873/17794_7#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191873/17794_7#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191873/ERR1191873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191873/ERR1191873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191873/17794_7#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191873/17794_7#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69447245;3769 ERS724996 ERX1265257 GENOMIC 14934761 279123250 2015-12-17 SC_RUN_17794_7#51 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191873/17794_7#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191873/17794_7#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#51 ERR774562 SC_EXP_14936_4#89 220 953c9141d491c3bd039537a61105a659;60d1e0ba10c6d7b8ab0afa30c078655c 1313 bdfa24bb17eb2a34a67f5925ee396685;9ef012ae7797d0f076f48602b2ed2344 SAMEA2814394 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774562/ERR774562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774562/ERR774562_2.fastq.gz 5301516 WGS GPS_ZA_2606-sc-2138188 RANDOM 195202140;195408684 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774562/ERR774562_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774562/ERR774562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774562/14936_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774562/14936_4#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774562/ERR774562_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774562/ERR774562_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774562/14936_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774562/14936_4#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 327507636;8553 ERS566762 ERX717441 GENOMIC 12347929 530151600 2015-03-03 SC_RUN_14936_4#89 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774562/14936_4#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774562/14936_4#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#89 ERR1192147 SC_EXP_17794_8#136 441 675730645b5e874031d8827d7297b45c;548574ebc47b65bbd59168999e814862 1313 4754edaa5fdd83f4beeaf8eba8a4d60b;9e4b16bb8e4adf65e44360bc6cf7d5aa SAMEA3388897 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192147/ERR1192147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192147/ERR1192147_2.fastq.gz 3352648 WGS GPS_MA_216-sc-2279558 RANDOM 61699598;66843268 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192147/ERR1192147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192147/ERR1192147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192147/17794_8#136.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192147/17794_8#136.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1192147/ERR1192147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1192147/ERR1192147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192147/17794_8#136.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192147/17794_8#136.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 101313083;5582 ERS725000 ERX1265531 GENOMIC 14941633 419081000 2015-12-17 SC_RUN_17794_8#136 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192147/17794_8#136.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192147/17794_8#136.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#136 ERR869915 SC_EXP_15531_3#7 199 f53e50c7af37cbb62b40b67ecc24934c;a9aff021b6560552c39b07d5a00b64ea 1313 00a9c9631c7eb60f1cc97294c14eec46;82614052c1bc85404ce6fdd74628f509 SAMEA3171338 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869915/ERR869915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869915/ERR869915_2.fastq.gz 4428176 WGS GPS_MW_1003391-sc-2139903 RANDOM 168197793;161138870 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869915/ERR869915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869915/ERR869915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869915/15531_3#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869915/15531_3#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869915/ERR869915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869915/ERR869915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869915/15531_3#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869915/15531_3#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273443594;7153 ERS625729 ERX949516 GENOMIC 12862600 442817600 2015-05-06 SC_RUN_15531_3#7 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869915/15531_3#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869915/15531_3#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_3#7 ERR773844 SC_EXP_14913_2#30 226 bf8a4569a3ec83eb07a5c46016c5398f;696f09eb0cc9785069d1bfc97b9f8ca9 1313 a597bfd44ddaed6b914b92f85f610b97;999698571aa9274bc8a89ad3ff0c4f9e SAMEA2814040 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773844/ERR773844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773844/ERR773844_2.fastq.gz 5172278 WGS GPS_ZA_2262-sc-2022524 RANDOM 174616631;182460506 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773844/ERR773844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773844/ERR773844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773844/14913_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773844/14913_2#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773844/ERR773844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773844/ERR773844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773844/14913_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773844/14913_2#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293516815;8249 ERS566408 ERX716723 GENOMIC 12395947 517227800 2015-03-03 SC_RUN_14913_2#30 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773844/14913_2#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773844/14913_2#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#30 ERR750976 SC_EXP_14723_3#70 222 8529ba94adbd09c54157c805f434c551;e9e51fd5d75799244de23b6bfa88e587 1313 81826b84820617e87b7c0d0f73e7b39e;ccce8e621915d7c926b901413af007ae SAMEA2797238 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750976/ERR750976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750976/ERR750976_2.fastq.gz 6321912 WGS GPS_US_PATH5414-sc-2139266 RANDOM 232202236;235626708 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750976/ERR750976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750976/ERR750976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750976/14723_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750976/14723_3#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750976/ERR750976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750976/ERR750976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750976/14723_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750976/14723_3#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 391773834;10126 ERS558849 ERX694658 GENOMIC 12133753 632191200 2015-02-03 SC_RUN_14723_3#70 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750976/14723_3#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750976/14723_3#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_3#70 ERR750979 SC_EXP_14723_3#73 222 1a275a2108a8fdbf61f2ba4e9971a9b7;8096db7c468bc05715d083729bbb689f 1313 475d8b598847efc3fc796e24328cc343;c8a463635f496bc406ad189859a3d444 SAMEA2797241 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750979/ERR750979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750979/ERR750979_2.fastq.gz 5660086 WGS GPS_US_PATH5417-sc-2139270 RANDOM 210131017;214282394 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750979/ERR750979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750979/ERR750979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750979/14723_3#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750979/14723_3#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750979/ERR750979_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750979/ERR750979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750979/14723_3#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750979/14723_3#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 352292442;9046 ERS558852 ERX694661 GENOMIC 12133694 566008600 2015-02-03 SC_RUN_14723_3#73 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750979/14723_3#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750979/14723_3#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_3#73 ERR751154 SC_EXP_14723_6#52 216 ebf6ce5d87eaf922bbcc9529e2edf6d4;7ea1894dd3ee65ea5e45902eb6a656b1 1313 a91b3ceae7cd8a6ff33e4f2c91d77ba2;8c31cafc48e23dad254db6b4f86ff865 SAMEA2797448 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751154/ERR751154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751154/ERR751154_2.fastq.gz 5016876 WGS GPS_US_PATH5625-sc-2139440 RANDOM 187032260;189658946 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751154/ERR751154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751154/ERR751154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751154/14723_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751154/14723_6#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751154/ERR751154_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751154/ERR751154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751154/14723_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751154/14723_6#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 311330869;7938 ERS559059 ERX694836 GENOMIC 12134020 501687600 2015-02-03 SC_RUN_14723_6#52 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751154/14723_6#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751154/14723_6#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_6#52 ERR751013 SC_EXP_14723_4#12 213 5c87c17bdfa4009ad812ff9570fd9ef5;428eea358346715658de12cdb92290c2 1313 3a49a43822dd1b400e12981ac49b2e2d;7bdb39dddfc4b37cb2faf8c5e0ce2d8b SAMEA2797275 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751013/ERR751013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751013/ERR751013_2.fastq.gz 5647108 WGS GPS_US_PATH5475-sc-2139304 RANDOM 210492931;214534806 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751013/ERR751013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751013/ERR751013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751013/14723_4#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751013/14723_4#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751013/ERR751013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751013/ERR751013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751013/14723_4#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751013/14723_4#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 355445582;9054 ERS558886 ERX694695 GENOMIC 12133821 564710800 2015-02-03 SC_RUN_14723_4#12 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751013/14723_4#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751013/14723_4#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_4#12 ERR730646 SC_EXP_14555_4#76 208 f42eb833dbe4810389ee0933ad40e3cf;7eea9ae56c7f7b4e0863024dbb2cdbce 1313 f210e979108d6c00388468c4e73f65dd;6fc02334c8d91797b26cccc028bcb5ee SAMEA2659069 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730646/ERR730646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730646/ERR730646_2.fastq.gz 3455368 WGS GPS_ZA_2118-sc-2021706 RANDOM 104374709;108399912 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730646/ERR730646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730646/ERR730646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730646/14555_4#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730646/14555_4#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730646/ERR730646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730646/ERR730646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730646/14555_4#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730646/14555_4#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 173173929;5696 ERS509097 ERX674592 GENOMIC 11814945 345536800 2015-01-14 SC_RUN_14555_4#76 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730646/14555_4#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730646/14555_4#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#76 ERR714178 SC_EXP_14410_4#76 220 5103037120de1fd705c86111c5ea159d;7af6bc6f8dbe0f703c411234d6d51eb2 1313 721e0f0f6910246edd9e2126c3ddf665;91ce493e028a1e8c948f5f45ef959719 SAMEA2627496 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714178/ERR714178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714178/ERR714178_2.fastq.gz 5145564 WGS GPS_GM_0339-sc-2003442 RANDOM 179855473;181125366 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714178/ERR714178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714178/ERR714178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714178/14410_4#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714178/14410_4#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714178/ERR714178_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714178/ERR714178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714178/14410_4#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714178/14410_4#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295972529;8432 ERS497395 ERX658100 GENOMIC 11858288 514556400 2015-01-08 SC_RUN_14410_4#76 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714178/14410_4#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714178/14410_4#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#76 ERR714289 SC_EXP_14410_6#17 230 f9766db4f2075ef0b3682a8abcb53411;f0421dea611a91554d05f0ad9a0a4f8e 1313 74d256aec000ea2210f04ab3759b81c0;caa1cce96fad7265c8c5ac519045905c SAMEA2627269 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714289/ERR714289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714289/ERR714289_2.fastq.gz 5484878 WGS GPS_GM_0365-sc-2003199 RANDOM 192042000;192506781 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714289/ERR714289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714289/ERR714289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714289/14410_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714289/14410_6#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714289/ERR714289_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714289/ERR714289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714289/14410_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714289/14410_6#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 314992915;9005 ERS497168 ERX658211 GENOMIC 11883256 548487800 2015-01-08 SC_RUN_14410_6#17 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714289/14410_6#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714289/14410_6#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#17 ERR633095 SC_EXP_13415_8#73 232 ebcd988968da5a9915b0f65ea0728fe4;96c79d84ee69a780b87ac164034326e7 1313 91d650b02b95d569a357e5439b1ef1de;7240736ea44cf34e5e82e7ae97b53f80 SAMEA2554280 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633095/ERR633095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633095/ERR633095_2.fastq.gz 4845138 WGS GPS_ZA_1169-sc-1951318 RANDOM 162837018;167662700 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633095/ERR633095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633095/ERR633095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633095/13415_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633095/13415_8#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633095/ERR633095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633095/ERR633095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633095/13415_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633095/13415_8#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272361634;7898 ERS464781 ERX589649 GENOMIC 10663315 484513800 2014-09-23 SC_RUN_13415_8#73 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633095/13415_8#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633095/13415_8#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#73 ERR714210 SC_EXP_14410_5#23 230 e2ea95b55ba6a944bc80150a875ca678;1db1b339f4e972c0725e913de1e38455 1313 2044cbdfc3a30931bda0b57e028d1cfd;9f5c04a35f2d467d886a0cf4b0b6003f SAMEA2627273 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714210/ERR714210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714210/ERR714210_2.fastq.gz 6075506 WGS GPS_GM_0201-sc-2003204 RANDOM 214640131;216273700 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714210/ERR714210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714210/ERR714210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714210/14410_5#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714210/14410_5#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714210/ERR714210_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714210/ERR714210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714210/14410_5#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714210/14410_5#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 355317756;9913 ERS497172 ERX658132 GENOMIC 11858518 607550600 2015-01-08 SC_RUN_14410_5#23 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714210/14410_5#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714210/14410_5#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_5#23 ERR568546 SC_EXP_12837_2#29 237 8841662c4374a4d3dc73d8342b038371;799ef7f0a4103a3be41d4e1e2024c9a9 1313 52767533e24d6a7eed26b70b87435caa;53f9474349346bcd37841bdac6e04e8f SAMEA2434529 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568546/ERR568546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568546/ERR568546_2.fastq.gz 4717964 WGS SA_GPS_SP424-sc-1895593 RANDOM 161023086;163972070 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568546/ERR568546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568546/ERR568546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568546/12837_2#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568546/12837_2#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568546/ERR568546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568546/ERR568546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568546/12837_2#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568546/12837_2#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268091226;7693 ERS428706 ERX527535 GENOMIC 9967241 471796400 2014-07-23 SC_RUN_12837_2#29 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568546/12837_2#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568546/12837_2#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_2#29 ERR563778 SC_EXP_12754_2#24 209 b359599d4fcd823d1223b3bdd5d5caa7;b31e35637fd20d565d77052dfddcbe36 1313 6c9e69aade0364cead8c37704e077847;a3e7e86093ac0fd3608d4ce7c6370b1b SAMEA2383044 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563778/ERR563778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563778/ERR563778_2.fastq.gz 4876718 WGS 2091204_II-sc-1870294 RANDOM 164012483;169018737 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563778/ERR563778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563778/ERR563778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563778/12754_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563778/12754_2#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563778/ERR563778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563778/ERR563778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563778/12754_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563778/12754_2#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 275156623;8062 ERS409369 ERX522803 GENOMIC 9918653 487671800 2014-07-16 SC_RUN_12754_2#24 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563778/12754_2#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563778/12754_2#24.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#24 ERR490732 SC_EXP_12162_1#28 223 7e42911469b025b90505437410eac194;9d7e8d32f05a96a428fbef9be87236c3 1313 5aeb07694586acffbd1deb304f330187;981d3e88aef13ef86b7c73faf5629466 SAMEA2298305 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490732/ERR490732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490732/ERR490732_2.fastq.gz 4799052 WGS SA_GPS_SP239-sc-1810516 RANDOM 146259613;155394264 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490732/ERR490732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490732/ERR490732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490732/12162_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490732/12162_1#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490732/ERR490732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490732/ERR490732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490732/12162_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490732/12162_1#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246264035;7826 ERS390763 ERX456186 GENOMIC 9340481 479905200 2014-04-28 SC_RUN_12162_1#28 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490732/12162_1#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490732/12162_1#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12162_1#28 ERR501554 SC_EXP_12290_3#14 200 09e9c3c5b71414528ed86944520f0679;b2033e9cf5c72f9cb36477ddb1cebe19 1313 b8b23a98e66951a47f7dc7267b5ab993;c93bf64bf163f03977604a1074fb042b SAMEA2341117 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501554/ERR501554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501554/ERR501554_2.fastq.gz 4811670 WGS C14848-sc-1811195 RANDOM 146008926;153680246 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501554/ERR501554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501554/ERR501554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501554/12290_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501554/12290_3#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501554/ERR501554_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501554/ERR501554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501554/12290_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501554/12290_3#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243770894;7744 ERS398788 ERX466911 GENOMIC 9467241 481167000 2014-05-12 SC_RUN_12290_3#14 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501554/12290_3#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501554/12290_3#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#14 ERR490783 SC_EXP_12162_1#79 223 5f402c40a7ff0dde32cc19a41c178505;4cce1441bc072459314e45c47b57ee16 1313 ab0b28176ac4962f525a545fafa6ef88;28908659ff341c48dbf64d03c14b1adc SAMEA2298356 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490783/ERR490783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490783/ERR490783_2.fastq.gz 3834962 WGS SA_GPS_SP290-sc-1810567 RANDOM 118504699;125419471 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490783/ERR490783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490783/ERR490783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490783/12162_1#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490783/12162_1#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490783/ERR490783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490783/ERR490783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490783/12162_1#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490783/12162_1#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 199656005;6210 ERS390814 ERX456237 GENOMIC 9340523 383496200 2014-04-28 SC_RUN_12162_1#79 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490783/12162_1#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490783/12162_1#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12162_1#79 ERR461332 SC_EXP_11860_8#50 222 28da9211f2899edfc15ba4e958c7d975;eae45ae5cbbc0f2ff4f431004c7d81de 1313 8d8ebef0584245b06c2303e636fce696;c97a6256c923d85189f5f4c6961a341b SAMEA2239182 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461332/ERR461332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461332/ERR461332_2.fastq.gz 3616714 WGS 2001755-sc-2013-11-05T12:09:20Z-1750553 RANDOM 114750459;120663385 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461332/ERR461332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461332/ERR461332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461332/11860_8#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461332/11860_8#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461332/ERR461332_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461332/ERR461332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461332/11860_8#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461332/11860_8#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 193232016;5987 ERS367994 ERX427673 GENOMIC 9015283 361671400 2014-03-18 SC_RUN_11860_8#50 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461332/11860_8#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461332/11860_8#50.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#50 ERR461017 SC_EXP_11860_5#12 210 a8952c045207002f516f7cbac3171533;47ac774132d23075a45afd59da6d466f 1313 6ebb08cf9776a73d443eedfd87f7f0ff;d00a86469c9ae4b9f8c5ae8691e73db9 SAMEA2238381 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461017/ERR461017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461017/ERR461017_2.fastq.gz 2063854 WGS 2070508-sc-2013-11-05T11:55:30Z-1749740 RANDOM 55771539;58828655 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461017/ERR461017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461017/ERR461017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461017/11860_5#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461017/11860_5#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461017/ERR461017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461017/ERR461017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461017/11860_5#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461017/11860_5#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 90252267;3435 ERS367193 ERX427358 GENOMIC 9014520 206385400 2014-03-18 SC_RUN_11860_5#12 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461017/11860_5#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461017/11860_5#12.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#12 ERR461535 SC_EXP_11861_2#70 216 c103b2517b4f16da72e31e46b523799c;82ab7cf12e32930faad6bcd465c66c9b 1313 71c657a3849e0805417c37307884c8dc;52cd2789ec8339455671281427a46645 SAMEA2238730 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461535/ERR461535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461535/ERR461535_2.fastq.gz 3788222 WGS 2094472-sc-2013-11-05T12:01:27Z-1750092 RANDOM 119125855;125163639 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461535/ERR461535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461535/ERR461535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461535/11861_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461535/11861_2#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461535/ERR461535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461535/ERR461535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461535/11861_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461535/11861_2#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 199466680;6269 ERS367542 ERX427876 GENOMIC 9020922 378822200 2014-03-18 SC_RUN_11861_2#70 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461535/11861_2#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461535/11861_2#70.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR433514 SC_EXP_11657_1#84 250 1dd43623b5820c885341b4cdb5413a63;0962fee7742184411ab87f1a6994ba82 1313 65b9cdb3b28b77ddaef491a65ba00063;aa8ec67f4e1677b3fa36f229de84c18e SAMEA2147814 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433514/ERR433514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433514/ERR433514_2.fastq.gz 5029528 WGS 0351_00-sc-2013-07-03T13:40:18Z-1659529 RANDOM 163873381;167651780 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433514/ERR433514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433514/ERR433514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433514/11657_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433514/11657_1#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433514/ERR433514_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433514/ERR433514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433514/11657_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433514/11657_1#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273656333;8288 ERS322696 ERX399789 GENOMIC 8735025 502952800 2014-02-18 SC_RUN_11657_1#84 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433514/11657_1#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433514/11657_1#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_1#84 ERR461530 SC_EXP_11861_2#65 216 d02b6134d209bcfadb9ea5000a5da22a;fa8638107baa4562988526d54d420934 1313 32506e298232a79c65b72426e1c40ec5;5b564d08f57ae9abb824ed5132869c6c SAMEA2238725 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461530/ERR461530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461530/ERR461530_2.fastq.gz 4024340 WGS 2094236-sc-2013-11-05T12:01:22Z-1750087 RANDOM 126483423;132992218 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461530/ERR461530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461530/ERR461530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461530/11861_2#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461530/11861_2#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461530/ERR461530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461530/ERR461530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461530/11861_2#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461530/11861_2#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 212894196;6676 ERS367537 ERX427871 GENOMIC 9020862 402434000 2014-03-18 SC_RUN_11861_2#65 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461530/11861_2#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461530/11861_2#65.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#65 ERR340824 SC_EXP_10208_2#8 215 46f16e42f12bfb1e160b244a8aed71cb 1313 028d41e1ec7c58b0f74a8f5ca6e773f2;9d45056510cd93d088266b5cd8d08d86 SAMEA2059417 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340824/ERR340824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340824/ERR340824_2.fastq.gz 2364351 WGS PBCN0403-sc-2013-03-27T13:20:42Z-1603719 RANDOM 157808126;179531378 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340824/ERR340824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340824/ERR340824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340824/10208_2#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340824/ERR340824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340824/ERR340824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340824/10208_2#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 462018899 ERS225853 ERX313673 GENOMIC 7400661 472870200 2013-09-16 SC_RUN_10208_2#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340824/10208_2#8.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#8 ERR338198 SC_EXP_10071_4#34 215 c09a0eabea2a05bec1b444cb3df251e0 1313 b98821a82465110553e7fc241d5901a1;7681ea98b296f8dcdf281f4fb66d9ee2 SAMEA2060005 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338198/ERR338198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338198/ERR338198_2.fastq.gz 1256721 WGS PBCN0327-sc-2013-03-27T13:19:42Z-1603658 RANDOM 82768531;85828661 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338198/ERR338198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338198/ERR338198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338198/10071_4#34.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338198/ERR338198_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338198/ERR338198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338198/10071_4#34.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 230211423 ERS225792 ERX311103 GENOMIC 7400496 251344200 2013-09-03 SC_RUN_10071_4#34 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338198/10071_4#34.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#34 ERR084189 SC_EXP_7038_5#11 251 71c57abd1a2615c2a6dfd2ec90d71975 1313 4c89c82e94d22c54f1c0012d92241943;0cf036c470cde05b5d96e2921c266fb7 SAMEA1029387 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084189/ERR084189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084189/ERR084189_2.fastq.gz 4523465 WGS SMRU2963-sc-2011-01-27-1063176 RANDOM 299017198;301772614 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084189/ERR084189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084189/ERR084189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084189/7038_5#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084189/ERR084189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084189/ERR084189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084189/7038_5#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1151088192 ERS022473 ERX061955 GENOMIC 3810448 678519750 2012-02-07 SC_RUN_7038_5#11 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084189/7038_5#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR051469 SC_EXP_6730_5#11 234 3cc085a0b2c6c6d53bd94a6f21c5a9c7 1313 c46718bcb83354695e90bad5725025d7;ba0e00fb1c9f95956d57109fa60ac462 SAMEA1024961 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051469/ERR051469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051469/ERR051469_2.fastq.gz 3976812 WGS SMRU659-sc-2011-01-27-1060848 RANDOM 237585794;248975963 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051469/ERR051469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051469/ERR051469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051469/6730_5#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051469/ERR051469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051469/ERR051469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051469/6730_5#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 613546661 ERS020169 ERX028517 GENOMIC 3100160 596521800 2011-11-02 SC_RUN_6730_5#11 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051469/6730_5#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR052638 SC_EXP_6714_8#13 246 093a266f5377bc6c0575c66cd2065ec5 1313 8437c1ab89dd1e9215f2d4b857a8286f;ad4efefaa4f166236627e31a8ee91a9a SAMEA1023959 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052638/ERR052638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052638/ERR052638_2.fastq.gz 5279518 WGS SMRU565-sc-2011-01-27-1060754 RANDOM 281934547;295754121 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052638/ERR052638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052638/ERR052638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052638/6714_8#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052638/ERR052638_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052638/ERR052638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052638/6714_8#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 743797149 ERS019723 ERX029686 GENOMIC 3100043 791927700 2011-11-07 SC_RUN_6714_8#13 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052638/6714_8#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR326725 SC_EXP_9953_7#36 227 220f43eb088a93bfb1becf7025d4b5fc 1313 02a6c6b88f1bd2d0a16868b1743c5e34;febb0f1b30f0d834ad8723762f964b76 SAMEA2059088 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326725/ERR326725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326725/ERR326725_2.fastq.gz 2229028 WGS PBCN0198-sc-2013-03-27T13:18:16Z-1603571 RANDOM 155105541;154516501 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326725/ERR326725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326725/ERR326725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326725/9953_7#36.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326725/ERR326725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326725/ERR326725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326725/9953_7#36.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 419733557 ERS225706 ERX299825 GENOMIC 7376832 445805600 2013-08-14 SC_RUN_9953_7#36 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326725/9953_7#36.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#36 ERR326716 SC_EXP_9953_7#27 227 a7085e64d1275d03d5da01c9cbb578c3 1313 63ef4af98d34ed38842189937e9fcb8f;34d62d63c152bd479e9469099d20f7c8 SAMEA2059085 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326716/ERR326716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326716/ERR326716_2.fastq.gz 2336685 WGS PBCN0185-sc-2013-03-27T13:18:07Z-1603562 RANDOM 159250308;158596021 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326716/ERR326716_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326716/ERR326716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326716/9953_7#27.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326716/ERR326716_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326716/ERR326716_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326716/9953_7#27.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 437718373 ERS225697 ERX299816 GENOMIC 7376819 467337000 2013-08-14 SC_RUN_9953_7#27 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326716/9953_7#27.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#27 ERR316672 SC_EXP_9789_3#10 207 8d1f095e40352638293a707c8c4abdbd 1313 fba793a73b326bf0f7003d18537f1754;4446eb453dc5cf6a1313e71eda945061 SAMEA2051758 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316672/ERR316672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316672/ERR316672_2.fastq.gz 15523268 WGS A57152-sc-2013-02-18T14:43:15Z-1561800 RANDOM 938702067;1029528277 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316672/ERR316672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316672/ERR316672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316672/9789_3#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316672/ERR316672_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316672/ERR316672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316672/9789_3#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 2657762632 ERS215016 ERX289820 GENOMIC 7066846 3104653600 2013-07-22 SC_RUN_9789_3#10 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316672/9789_3#10.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_3#10 ERR2091076 SC_EXP_22841_3#155 390 48836a2caf93f48faa1181e1ce3ce4ac;8798a4aef1532e1a52d483c018a718e0 1313 8f5bf4db95082b887f5721d310c7cde5;b00ce82135197f7dbcb9396cd7723158 SAMEA104035935 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091076/ERR2091076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091076/ERR2091076_2.fastq.gz 2723874 WGS caa6be20-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 61397051;68755787 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091076/ERR2091076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091076/ERR2091076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091076/22841_3#155.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091076/22841_3#155.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091076/ERR2091076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091076/ERR2091076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091076/22841_3#155.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091076/22841_3#155.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92783762;4485 ERS1699828 ERX2147870 GENOMIC DN483670V:F8 340484250 2017-08-08 SC_RUN_22841_3#155 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091076/22841_3#155.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091076/22841_3#155.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#155 ERR2089544 SC_EXP_21999_8#99 474 a8572a73919f7c659ca9f1ba665dc460;dcc4dae707092c6f83a66a5612b1d76d 1313 6f9584880877ae8c205a3afcf6c11d2d;81a77da96262decdd6e677bca993ecea SAMEA104154811 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089544/ERR2089544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089544/ERR2089544_2.fastq.gz 388010 WGS 73701310-c37a-11e6-b158-3c4a9275d6c8 RANDOM 8568861;9118694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089544/ERR2089544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089544/ERR2089544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089544/21999_8#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089544/21999_8#99.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089544/ERR2089544_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089544/ERR2089544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089544/21999_8#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089544/21999_8#99.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 10557250;686 ERS1813829 ERX2146338 GENOMIC DN476960M:C2 48501250 2017-08-08 SC_RUN_21999_8#99 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089544/21999_8#99.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089544/21999_8#99.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#99 ERR2089395 SC_EXP_21999_7#133 464 dce9c834b63cedd191583bde60d14a93;9e29555f85629b3df4c7f4320b3f93ce 1313 e9b8a282e654b18c94db0c5e6fbb489a;46dd186799b99cab7ce08a62a55d2037 SAMEA104154660 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089395/ERR2089395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089395/ERR2089395_2.fastq.gz 2271538 WGS 66e021d0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48551855;53123289 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089395/ERR2089395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089395/ERR2089395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089395/21999_7#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089395/21999_7#133.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089395/ERR2089395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089395/ERR2089395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089395/21999_7#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089395/21999_7#133.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71505116;3750 ERS1813678 ERX2146189 GENOMIC DN476874P:F5 283942250 2017-08-08 SC_RUN_21999_7#133 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089395/21999_7#133.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089395/21999_7#133.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#133 ERR2089490 SC_EXP_21999_8#45 451 026d36a6acec39a69d430eba0a59ef68;a56799229a8aab04ce44b30a486b3cbc 1313 2a60834cc293ac9851dd6c06053689a8;969cbaef1af2bde4a8cc5892620effb4 SAMEA104154756 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089490/ERR2089490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089490/ERR2089490_2.fastq.gz 3152476 WGS 70de44a0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 56260203;58874133 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089490/ERR2089490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089490/ERR2089490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089490/21999_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089490/21999_8#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089490/ERR2089490_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089490/ERR2089490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089490/21999_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089490/21999_8#45.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80314209;5193 ERS1813774 ERX2146284 GENOMIC DN476959T:E6 394059500 2017-08-08 SC_RUN_21999_8#45 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089490/21999_8#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089490/21999_8#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#45 ERR1756395 SC_EXP_20925_3#10 424 a2dcd7341a6221835719578e85076d6d;41fc34657a2626e629ff219276cf225f 1313 f1f56152336df5ea65530ff1a46d7570;bffce4d2bcdfe3bad426ef62b027ef6d SAMEA4036480 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756395/ERR1756395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756395/ERR1756395_2.fastq.gz 4595440 WGS 39de9c70-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 85499313;93038614 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756395/ERR1756395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756395/ERR1756395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756395/20925_3#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756395/20925_3#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/005/ERR1756395/ERR1756395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/005/ERR1756395/ERR1756395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756395/20925_3#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756395/20925_3#10.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 135568409;7648 ERS1207590 ERX1823415 GENOMIC DN461288B:B2 574430000 2016-12-13 SC_RUN_20925_3#10 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756395/20925_3#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756395/20925_3#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#10 ERR1202529 SC_EXP_17966_5#79 464 13ace35bdd602f21128b52bcaf7eee55;a3f2fd19147f380c5d4a6b641ab49d4a 1313 00974da13e3bed305f3061eb1a11ca66;d6e536430c180d50333fd7ba611eda77 SAMEA3389984 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202529/ERR1202529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202529/ERR1202529_2.fastq.gz 1866670 WGS GPS_MW_BHA8WB-sc-2296230 RANDOM 33616266;34238860 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202529/ERR1202529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202529/ERR1202529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202529/17966_5#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202529/17966_5#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202529/ERR1202529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202529/ERR1202529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202529/17966_5#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202529/17966_5#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 47463416;3131 ERS726087 ERX1274771 GENOMIC 15025536 233333750 2016-01-12 SC_RUN_17966_5#79 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202529/17966_5#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202529/17966_5#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#79 ERR1202467 SC_EXP_17966_5#17 464 44765e63981e2e71b3d2a9096889cfe4;15df5c333f5ed2b59a4a3e4c9c7fb708 1313 ed2fd3cdbcdfe3f26bc9ba97a7762334;6ba17e0a38d87255a3cc4d831d5b57ff SAMEA3390044 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202467/ERR1202467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202467/ERR1202467_2.fastq.gz 2073516 WGS GPS_MW_BQN1MN-sc-2296289 RANDOM 39416871;38849736 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202467/ERR1202467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202467/ERR1202467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202467/17966_5#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202467/17966_5#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/007/ERR1202467/ERR1202467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/007/ERR1202467/ERR1202467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202467/17966_5#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202467/17966_5#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 54912727;3474 ERS726147 ERX1274709 GENOMIC 15025457 259189500 2016-01-12 SC_RUN_17966_5#17 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202467/17966_5#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202467/17966_5#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#17 ERR1202428 SC_EXP_17870_8#168 447 4c290dc08da2472f43d8a93ebaf8ba6c;5fa4448769f6b492fc2e66a6e5af34ad 1313 dccea3579657f35513c1eda7968ae88c;c2c687b48cfb4c7d976415c6a17c21aa SAMEA3389960 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202428/ERR1202428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202428/ERR1202428_2.fastq.gz 2570222 WGS GPS_MW_BQN1UJ-sc-2296206 RANDOM 47984654;51448778 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202428/ERR1202428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202428/ERR1202428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202428/17870_8#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202428/17870_8#168.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202428/ERR1202428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202428/ERR1202428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202428/17870_8#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202428/17870_8#168.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75206551;4312 ERS726063 ERX1274670 GENOMIC 14977584 321277750 2016-01-12 SC_RUN_17870_8#168 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202428/17870_8#168.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202428/17870_8#168.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#168 ERR1202382 SC_EXP_17870_8#122 447 3eb919ec769e09280a037868386434c7;496237a0905aa7f5c26ee76f77452d6d 1313 0eb06227654e96e3f2387733853df7f9;0de22cf613473af35364f9e45e49ebad SAMEA3389878 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202382/ERR1202382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202382/ERR1202382_2.fastq.gz 2498928 WGS GPS_MW_BKQ58L_R1-sc-2296122 RANDOM 47922597;51515734 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202382/ERR1202382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202382/ERR1202382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202382/17870_8#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202382/17870_8#122.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202382/ERR1202382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202382/ERR1202382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202382/17870_8#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202382/17870_8#122.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75429683;4151 ERS725981 ERX1274624 GENOMIC 14977602 312366000 2016-01-12 SC_RUN_17870_8#122 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202382/17870_8#122.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202382/17870_8#122.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#122 ERR1191845 SC_EXP_17794_7#23 458 3652bf7ee20b42ef40395651bc2263df;0cd1bd1c199146c5338c8797926d9d77 1313 c1dfa537b9578b38a9803c25ed2d847a;c3ba548620aee3ccc57035f01fc990e4 SAMEA3381578 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191845/ERR1191845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191845/ERR1191845_2.fastq.gz 1122066 WGS GPS_GM_2089-sc-2279457 RANDOM 24242835;24492164 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191845/ERR1191845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191845/ERR1191845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191845/17794_7#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191845/17794_7#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191845/ERR1191845_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191845/ERR1191845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191845/17794_7#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191845/17794_7#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 35714283;1937 ERS719837 ERX1265229 GENOMIC 14934805 140258250 2015-12-17 SC_RUN_17794_7#23 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191845/17794_7#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191845/17794_7#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#23 ERR1191839 SC_EXP_17794_7#17 458 114b089857a8c3515955a6877bb571df;0dac66a358d30db8b276891536b45d64 1313 cc14d0c2715d0cc1bca71e7488656fb6;36646de13f93cd890533b515c4cf8e71 SAMEA3381540 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191839/ERR1191839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191839/ERR1191839_2.fastq.gz 3282302 WGS GPS_GM_2069-sc-2279418 RANDOM 66858997;65654883 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191839/ERR1191839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191839/ERR1191839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191839/17794_7#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191839/17794_7#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1191839/ERR1191839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1191839/ERR1191839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191839/17794_7#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191839/17794_7#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 102315102;5395 ERS719799 ERX1265223 GENOMIC 14934733 410287750 2015-12-17 SC_RUN_17794_7#17 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191839/17794_7#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191839/17794_7#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#17 ERR1106806 SC_EXP_17428_8#183 478 15e478a5e5ee8a3745bbb715a6b14c17;8dfc4701cabf91dafbef1e01d8c9dec4 1313 371fa4b2bd9ac997780f03753860582b;f712139dfafb06b21872fc2f6bf16f36 SAMEA3381397 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106806/ERR1106806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106806/ERR1106806_2.fastq.gz 2297706 WGS GPS_GM_1909-sc-2279274 RANDOM 41996208;44331088 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106806/ERR1106806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106806/ERR1106806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106806/17428_8#183.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106806/17428_8#183.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/006/ERR1106806/ERR1106806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/006/ERR1106806/ERR1106806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106806/17428_8#183.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106806/17428_8#183.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65947962;3860 ERS719656 ERX1186337 GENOMIC 14702611 287213250 2015-11-03 SC_RUN_17428_8#183 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106806/17428_8#183.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106806/17428_8#183.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#183 ERR1106779 SC_EXP_17428_8#156 478 13ab04fc17fe46475ba671b1cc97f808;91d7c9f4cb100e4376f88dde88ce47a4 1313 c6ac07d32b30ef875816be45c5f22377;9ed4c2ee48d979b1e85f61a63b425fb2 SAMEA3381370 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106779/ERR1106779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106779/ERR1106779_2.fastq.gz 2300256 WGS GPS_GM_1882-sc-2279228 RANDOM 44479784;45175310 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106779/ERR1106779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106779/ERR1106779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106779/17428_8#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106779/17428_8#156.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/009/ERR1106779/ERR1106779_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/009/ERR1106779/ERR1106779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106779/17428_8#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106779/17428_8#156.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67989900;3839 ERS719629 ERX1186310 GENOMIC 14702572 287532000 2015-11-03 SC_RUN_17428_8#156 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106779/17428_8#156.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106779/17428_8#156.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#156 ERR1066244 SC_EXP_17175_7#51 468 20ec7acdb6341b1252577ed2d3805c27;e7feca25ace668a0bb9574d45e8d2863 1313 9b55cd92c75fb9f6ccbcd55719bc0d62;6f273a21089c206e1612538f11c776e1 SAMEA3354001 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066244/ERR1066244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066244/ERR1066244_2.fastq.gz 4900236 WGS GPS_ZA_2844-sc-2278607 RANDOM 86951498;90586603 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066244/ERR1066244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066244/ERR1066244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066244/17175_7#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066244/17175_7#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066244/ERR1066244_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066244/ERR1066244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066244/17175_7#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066244/17175_7#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 134593907;8097 ERS708356 ERX1146394 GENOMIC 14427449 612529500 2015-10-13 SC_RUN_17175_7#51 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066244/17175_7#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066244/17175_7#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#51 ERR1066288 SC_EXP_17175_8#4 467 f9f0ed69b8ca4b13cf76c9f19ea985b8;7ab883d4710df4501c1c009aaf85aa86 1313 b3482b08a627935e00620aea91b09424;9ad456aab717c2983416b97a20c62035 SAMEA3354092 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066288/ERR1066288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066288/ERR1066288_2.fastq.gz 5692442 WGS GPS_ZA_2886-sc-2278698 RANDOM 101517743;104527646 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066288/ERR1066288_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066288/ERR1066288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066288/17175_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066288/17175_8#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066288/ERR1066288_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066288/ERR1066288_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066288/17175_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066288/17175_8#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 158242923;9468 ERS708447 ERX1146438 GENOMIC 14455722 711555250 2015-10-13 SC_RUN_17175_8#4 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066288/17175_8#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066288/17175_8#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#4 ERR1065832 SC_EXP_17150_6#6 464 ba891cbece3bec5767edf687e903b28a;a338ba637f5d22b07df1239c69cc6b24 1313 c53dd80a4a2d7b0be10496c42c32769a;79385e756ca923bb7c15111a0b9e88b6 SAMEA3354093 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065832/ERR1065832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065832/ERR1065832_2.fastq.gz 4955130 WGS GPS_ZA_2980-sc-2278699 RANDOM 89809015;86589991 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065832/ERR1065832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065832/ERR1065832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065832/17150_6#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065832/17150_6#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065832/ERR1065832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065832/ERR1065832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065832/17150_6#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065832/17150_6#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 133318435;8168 ERS708448 ERX1145982 GENOMIC 14438216 619391250 2015-10-13 SC_RUN_17150_6#6 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065832/17150_6#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065832/17150_6#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#6 ERR1065877 SC_EXP_17150_6#51 464 1f0bc239b2295b4bca15cb8135906b76;b4d54880368f1c5337a17292dd35282b 1313 c9ba4afe0b931a6ad1c87754d0d5ab13;75de2e018c35cef523929ede395f9ebc SAMEA3354175 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065877/ERR1065877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065877/ERR1065877_2.fastq.gz 4497286 WGS GPS_ZA_3017-sc-2278783 RANDOM 85540020;80534573 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065877/ERR1065877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065877/ERR1065877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065877/17150_6#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065877/17150_6#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065877/ERR1065877_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065877/ERR1065877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065877/17150_6#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065877/17150_6#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 124786477;7473 ERS708530 ERX1146027 GENOMIC 14438186 562160750 2015-10-13 SC_RUN_17150_6#51 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065877/17150_6#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065877/17150_6#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#51 ERR997540 SC_EXP_16399_5#79 228 f5c5ccd65aaf94d0020c8d2f977205b2;fcdf4274d8170b59c1f2ee037be75aff 1313 d1140fd174e0ebe7c5ee7db5a4242386;26cb8a8402cf45caf2653ea5922f0cd9 SAMEA3309575 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997540/ERR997540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997540/ERR997540_2.fastq.gz 5035904 WGS GPS_GM_1594-sc-2206377 RANDOM 161119232;167130043 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997540/ERR997540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997540/ERR997540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997540/16399_5#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997540/16399_5#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997540/ERR997540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997540/ERR997540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997540/16399_5#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997540/16399_5#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265169418;7995 ERS686037 ERX1076576 GENOMIC 13835545 503590400 2015-09-04 SC_RUN_16399_5#79 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997540/16399_5#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997540/16399_5#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#79 ERR997487 SC_EXP_16399_5#26 228 69085428e9c696ebbbef94cf21ee3589;e834304ab896fe979321b03ec363d2a3 1313 e5e0ae9ca79781d55759e18e55ae4763;2909a55d740679cdda39cf0a072c74dd SAMEA3309577 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997487/ERR997487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997487/ERR997487_2.fastq.gz 5052252 WGS GPS_GM_1596-sc-2206379 RANDOM 161561714;167264944 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997487/ERR997487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997487/ERR997487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997487/16399_5#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997487/16399_5#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997487/ERR997487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997487/ERR997487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997487/16399_5#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997487/16399_5#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265817756;8034 ERS686039 ERX1076523 GENOMIC 13835479 505225200 2015-09-04 SC_RUN_16399_5#26 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997487/16399_5#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997487/16399_5#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#26 ERR925232 SC_EXP_15995_2#21 219 4dedabdde30cc5153a48be3c4dfb7d0a;9adc83fa5b3df9d03c4a0bd9816d510b 1313 e0e04add703856b93f462fc56b5e29e1;3289056ff883e46403551c6f41875143 SAMEA3208952 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925232/ERR925232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925232/ERR925232_2.fastq.gz 1712654 WGS GPS_ZA_carriage_SP1001-sc-2205089 RANDOM 52987691;54922074 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925232/ERR925232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925232/ERR925232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925232/15995_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925232/15995_2#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925232/ERR925232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925232/ERR925232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925232/15995_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925232/15995_2#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87657906;2947 ERS640054 ERX1004507 GENOMIC 13301164 171265400 2015-06-23 SC_RUN_15995_2#21 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925232/15995_2#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925232/15995_2#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#21 ERR980057 SC_EXP_16288_5#18 218 9ba40aafc00211de2e1d029c69f91dba;cc59fa8bc0d05d965187d27f139b38af 1313 34aa121a05ec06c60289773b6b85ed66;7daf6e8aef8ff81a4af56e96f3833d58 SAMEA3232527 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980057/ERR980057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980057/ERR980057_2.fastq.gz 4695924 WGS GPS_NP_4107-sc-2205445 RANDOM 158868055;158827922 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980057/ERR980057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980057/ERR980057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980057/16288_5#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980057/16288_5#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980057/ERR980057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980057/ERR980057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980057/16288_5#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980057/16288_5#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258188669;7641 ERS653738 ERX1056929 GENOMIC 13296344 469592400 2015-08-12 SC_RUN_16288_5#18 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980057/16288_5#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980057/16288_5#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#18 ERR1065449 SC_EXP_17138_3#59 472 25b98975353e1a271aaed3cdf5295a15;10c2b8c73506ead0efceb427425c3bd0 1313 d157bc79e248c194e734562d26c9b9c8;05b55ba8fe4505c6931de268ac44847d SAMEA3354202 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065449/ERR1065449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065449/ERR1065449_2.fastq.gz 4729308 WGS GPS_ZA_carriage_SP1950-sc-2278810 RANDOM 97993800;94317657 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065449/ERR1065449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065449/ERR1065449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065449/17138_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065449/17138_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065449/ERR1065449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065449/ERR1065449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065449/17138_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065449/17138_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 144522616;7837 ERS708557 ERX1145599 GENOMIC 14438284 591163500 2015-10-13 SC_RUN_17138_3#59 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065449/17138_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065449/17138_3#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#59 ERR774171 SC_EXP_14913_5#77 225 88cc08b64c45d01107b2737062643bbf;6c70fc9afd4595e4f6652e098d4f28b7 1313 7f88a260375cdf90eb548f314a098565;8e872aaf432460c4effffd990ba98933 SAMEA2814477 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774171/ERR774171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774171/ERR774171_2.fastq.gz 5190032 WGS GPS_ZA_2689-sc-2138272 RANDOM 170212409;177688352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774171/ERR774171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774171/ERR774171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774171/14913_5#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774171/14913_5#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774171/ERR774171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774171/ERR774171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774171/14913_5#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774171/14913_5#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285230546;8439 ERS566845 ERX717050 GENOMIC 12403424 519003200 2015-03-03 SC_RUN_14913_5#77 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774171/14913_5#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774171/14913_5#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#77 ERR632973 SC_EXP_13415_7#44 225 23ff40db1cfb84cf6606faa40f72e306;0bd0b066e75e92e8e81b6a68d5c5d626 1313 0ca2a0f7f4d01a885188f6d13d3c12d9;e2414ce2d5bd6c837362d5950fa3923b SAMEA2554155 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632973/ERR632973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632973/ERR632973_2.fastq.gz 4595450 WGS GPS_ZA_1044-sc-1951192 RANDOM 153321003;158363741 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632973/ERR632973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632973/ERR632973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632973/13415_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632973/13415_7#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632973/ERR632973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632973/ERR632973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632973/13415_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632973/13415_7#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255753396;7605 ERS464656 ERX589527 GENOMIC 10646328 459545000 2014-09-23 SC_RUN_13415_7#44 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632973/13415_7#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632973/13415_7#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#44 ERR773954 SC_EXP_14913_3#45 225 6dc5b448c09b0ecb9821121868fb05f6;a74c2a5ceaab68ad8d78c7ed7df88f59 1313 d05f711ae9a11926b82442b39aef0c96;1565933c56a1cf9c4652d1c3d5d9fc3d SAMEA2813974 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773954/ERR773954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773954/ERR773954_2.fastq.gz 4760908 WGS GPS_ZA_2182-sc-2022458 RANDOM 159883092;166088184 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773954/ERR773954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773954/ERR773954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773954/14913_3#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773954/14913_3#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773954/ERR773954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773954/ERR773954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773954/14913_3#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773954/14913_3#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267079849;7753 ERS566342 ERX716833 GENOMIC 12345963 476090800 2015-03-03 SC_RUN_14913_3#45 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773954/14913_3#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773954/14913_3#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#45 ERR600204 SC_EXP_13414_2#71 233 606c5afff59bb44aa46b081b8569f734;50c845e948bafdf9ca49aea2d90e53e7 1313 d2a7fd7c6a663cbf831c4f9cf4dfa438;c436354138aad67b7604b3361661a026 SAMEA2521622 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600204/ERR600204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600204/ERR600204_2.fastq.gz 5019092 WGS 2012218663-sc-1946914 RANDOM 165217993;169136110 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600204/ERR600204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600204/ERR600204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600204/13414_2#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600204/13414_2#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600204/ERR600204_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600204/ERR600204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600204/13414_2#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600204/13414_2#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 275984848;8321 ERS455162 ERX557033 GENOMIC 10600574 501909200 2014-09-16 SC_RUN_13414_2#71 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600204/13414_2#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600204/13414_2#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#71 ERR716225 SC_EXP_14412_3#48 227 c0ef4de7c52247b008e36bf832fdd14c;347e61aac5e851cc148e30495102bb33 1313 878286daf7055ac6c9806dd42646a95d;fabe0af2d0dbca741fe77d124a0b3c2b SAMEA2674672 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716225/ERR716225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716225/ERR716225_2.fastq.gz 4914820 WGS 990506_II-sc-2020025 RANDOM 168358526;170025767 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716225/ERR716225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716225/ERR716225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716225/14412_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716225/14412_3#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716225/ERR716225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716225/ERR716225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716225/14412_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716225/14412_3#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 276903119;8126 ERS515187 ERX660147 GENOMIC 11617169 491482000 2015-01-08 SC_RUN_14412_3#48 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716225/14412_3#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716225/14412_3#48.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 14412_3#48 ERR564003 SC_EXP_12754_4#60 232 f323612877ffc6bb0737c64277aaaf82;b586ec44a6a4ff61b2408de82df83133 1313 16caef64ff74421269be1d72c1701ed3;dd020292cb5bf238e70e6c6e3c2fe10e SAMEA2383270 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR564/ERR564003/ERR564003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR564/ERR564003/ERR564003_2.fastq.gz 5081232 WGS 2080033-sc-1870522 RANDOM 176513339;180028498 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR564/ERR564003/ERR564003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR564/ERR564003/ERR564003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR564/ERR564003/12754_4#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR564/ERR564003/12754_4#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR564/ERR564003/ERR564003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR564/ERR564003/ERR564003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR564/ERR564003/12754_4#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR564/ERR564003/12754_4#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 294558787;8329 ERS409595 ERX523028 GENOMIC 9922247 508123200 2014-07-16 SC_RUN_12754_4#60 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR564/ERR564003/12754_4#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR564/ERR564003/12754_4#60.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 ERR570413 SC_EXP_12837_5#12 238 85e3f6c4d45eb8d0dd9a3a97ee25fd5c;646d60a64f966c9cfa33632ba34e5ddd 1313 f773b1e71f4da7e7702381cc3b4ac00e;176b6e84211875faf7223af80d5d1360 SAMEA2434776 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570413/ERR570413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570413/ERR570413_2.fastq.gz 6371764 WGS SA_GPS_SP671-sc-1895842 RANDOM 209855214;213766197 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570413/ERR570413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570413/ERR570413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570413/12837_5#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570413/12837_5#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570413/ERR570413_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570413/ERR570413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570413/12837_5#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570413/12837_5#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 351294668;10548 ERS428953 ERX529402 GENOMIC 9993251 637176400 2014-07-28 SC_RUN_12837_5#12 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570413/12837_5#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570413/12837_5#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#12 ERR563817 SC_EXP_12754_2#63 209 97ccafb9b34967f186561b718a780dd0;b9b19e1c2259d9ef7e31f7fc3b511c5d 1313 f2fe281be70fe83dc073680495617699;24582b7c4b74ad32c8a096bc2e94201a SAMEA2383083 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563817/ERR563817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563817/ERR563817_2.fastq.gz 4424614 WGS 2094236_II-sc-1870333 RANDOM 148263567;153185255 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563817/ERR563817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563817/ERR563817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563817/12754_2#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563817/12754_2#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563817/ERR563817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563817/ERR563817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563817/12754_2#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563817/12754_2#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 249282440;7315 ERS409408 ERX522842 GENOMIC 9918646 442461400 2014-07-16 SC_RUN_12754_2#63 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563817/12754_2#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563817/12754_2#63.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#63 ERR559297 SC_EXP_12718_4#31 233 435e81d814fd16042e87abe7df280a5e;cc80aa59028c933c5561b8b6992101c9 1313 fc3890d3b2982bd9176c78783d22854e;412d8d6ee436e973b0c0143660f546f0 SAMEA2382766 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559297/ERR559297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559297/ERR559297_2.fastq.gz 4791374 WGS 2010572_II-sc-1870013 RANDOM 151891376;158211351 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559297/ERR559297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559297/ERR559297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559297/12718_4#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559297/12718_4#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559297/ERR559297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559297/ERR559297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559297/12718_4#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559297/12718_4#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 254663424;7867 ERS409091 ERX518333 GENOMIC 9918343 479137400 2014-07-10 SC_RUN_12718_4#31 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559297/12718_4#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559297/12718_4#31.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#31 ERR563947 SC_EXP_12754_4#3 232 b5ff8300d33e9ad12a40dc3090ed247f;78e84eec7d2e88ff71a31c537833dcde 1313 c9480ca62568873cf9dd730b010efc84;8bc1de06dbe806252fb788a8f9195fb8 SAMEA2383213 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563947/ERR563947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563947/ERR563947_2.fastq.gz 5871766 WGS 2111297_II-sc-1870465 RANDOM 202939277;207645451 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563947/ERR563947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563947/ERR563947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563947/12754_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563947/12754_4#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563947/ERR563947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563947/ERR563947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563947/12754_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563947/12754_4#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 341363641;9718 ERS409538 ERX522972 GENOMIC 9922228 587176600 2014-07-16 SC_RUN_12754_4#3 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563947/12754_4#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563947/12754_4#3.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#3 ERR485957 SC_EXP_12045_8#79 250 f7c7a7a7e29711bd34aa967d8d8c19cb;93daab84609d195c59e3ce6ee86ef315 1313 4ebd401c7900e4158f3983a4e679adc0;b3894d9297bcad4ff877b14f874b6a70 SAMEA2238343 2014-04-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR485/ERR485957/ERR485957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR485/ERR485957/ERR485957_2.fastq.gz 3684502 WGS 2070030-sc-2013-11-05T11:54:54Z-1749701 RANDOM 115416209;114851444 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR485/ERR485957/ERR485957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR485/ERR485957/ERR485957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR485/ERR485957/12045_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR485/ERR485957/12045_8#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR485/ERR485957/ERR485957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR485/ERR485957/ERR485957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR485/ERR485957/12045_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR485/ERR485957/12045_8#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 187376401;6119 ERS367155 ERX451789 GENOMIC 9163256 368450200 2014-04-22 SC_RUN_12045_8#79 fasp.sra.ebi.ac.uk:/vol1/run/ERR485/ERR485957/12045_8#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR485/ERR485957/12045_8#79.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA302549 12045_8#79 ERR461102 SC_EXP_11860_6#3 233 a9aaa95db6ef3839c8e099a038eb6d4f;73a2b51340bbf9d09b9419fe942a7c30 1313 b6dac933bde7304a3a28383c4088f38e;57a578205cf4f66a877db571697cf120 SAMEA2238469 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461102/ERR461102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461102/ERR461102_2.fastq.gz 5106152 WGS 2071986-sc-2013-11-05T11:56:59Z-1749829 RANDOM 162346477;172338846 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461102/ERR461102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461102/ERR461102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461102/11860_6#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461102/11860_6#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461102/ERR461102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461102/ERR461102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461102/11860_6#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461102/11860_6#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 276578311;8469 ERS367281 ERX427443 GENOMIC 9015543 510615200 2014-03-18 SC_RUN_11860_6#3 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461102/11860_6#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461102/11860_6#3.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461577 SC_EXP_11861_3#24 226 bf95f1890a85f44ed79242a35ca6207f;f3ad5de1bdf9f150d104c2dca6cf7979 1313 f178a63cdb4f10d2027ba75f2b151596;41001b65865ef35477afd09c61bf8235 SAMEA2238878 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461577/ERR461577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461577/ERR461577_2.fastq.gz 4149768 WGS 2110469-sc-2013-11-05T12:04:14Z-1750242 RANDOM 136733341;143470490 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461577/ERR461577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461577/ERR461577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461577/11861_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461577/11861_3#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461577/ERR461577_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461577/ERR461577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461577/11861_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461577/11861_3#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 230496433;6793 ERS367690 ERX427918 GENOMIC 9016292 414976800 2014-03-18 SC_RUN_11861_3#24 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461577/11861_3#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461577/11861_3#24.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#24 ERR460953 SC_EXP_11860_4#38 217 bd389f9c3fe26b933b53894625aaee3f;3008629a50bce2853bcb0efe813067d0 1313 d8cf18ec951bdf018e04f21f7e1a5e00;c2a994fd2a48fbb62767802b9a967b19 SAMEA2238312 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460953/ERR460953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460953/ERR460953_2.fastq.gz 4422648 WGS 2061310-sc-2013-11-05T11:54:24Z-1749670 RANDOM 143110748;151280088 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460953/ERR460953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460953/ERR460953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460953/11860_4#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460953/11860_4#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460953/ERR460953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460953/ERR460953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460953/11860_4#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460953/11860_4#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 241085035;7217 ERS367124 ERX427294 GENOMIC 9012500 442264800 2014-03-18 SC_RUN_11860_4#38 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460953/11860_4#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460953/11860_4#38.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#38 ERR461713 SC_EXP_11861_4#69 224 693ebc52e3dd9808671bd36c39f63c1a;6b1c3ff6949437b1c1e3ba5332c993ab 1313 ed4ee0787fe408db33683bc4220af403;e65bf6909ebfecb1f057b40e40dfdf21 SAMEA2239015 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461713/ERR461713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461713/ERR461713_2.fastq.gz 3777720 WGS 982374-sc-2013-11-05T12:06:31Z-1750381 RANDOM 117336337;123160455 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461713/ERR461713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461713/ERR461713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461713/11861_4#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461713/11861_4#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461713/ERR461713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461713/ERR461713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461713/11861_4#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461713/11861_4#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 197256835;6263 ERS367827 ERX428054 GENOMIC 9016409 377772000 2014-03-18 SC_RUN_11861_4#69 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461713/11861_4#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461713/11861_4#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461292 SC_EXP_11860_8#7 222 6dbeb51f9d0caf89099363a1fadb5b18;c28c9f6add08392530c14ae49db2e6d9 1313 01c609c33872ba5e7ca3027870f3daff;5fa0e6895216dc20b840fc6d58972f7e SAMEA2239142 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461292/ERR461292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461292/ERR461292_2.fastq.gz 4585264 WGS 2000762-sc-2013-11-05T12:08:37Z-1750513 RANDOM 144340856;150151567 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461292/ERR461292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461292/ERR461292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461292/11860_8#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461292/11860_8#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461292/ERR461292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461292/ERR461292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461292/11860_8#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461292/11860_8#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 241054460;7557 ERS367954 ERX427633 GENOMIC 9015337 458526400 2014-03-18 SC_RUN_11860_8#7 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461292/11860_8#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461292/11860_8#7.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461827 SC_EXP_11861_5#90 221 ada0e25b534e3056dc141e29fac1e65e;aabb4634b4e385ffba036468bfad7454 1313 d761b4e0dc3b4d5249d2c2f293f6846c;7a52b1cf2914a926b2b8affaab571378 SAMEA2239315 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461827/ERR461827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461827/ERR461827_2.fastq.gz 4166292 WGS 2091835-sc-2013-11-05T12:11:37Z-1750688 RANDOM 129549645;134662325 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461827/ERR461827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461827/ERR461827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461827/11861_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461827/11861_5#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461827/ERR461827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461827/ERR461827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461827/11861_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461827/11861_5#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 213894922;6811 ERS368127 ERX428168 GENOMIC 9017838 416629200 2014-03-18 SC_RUN_11861_5#90 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461827/11861_5#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461827/11861_5#90.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461404 SC_EXP_11861_1#27 225 1fb08117532e6fc432151360b19f9bd8;7405650810b6525e6fdc3b37d2c9da93 1313 9061ef5d38d461f98da6d05dd8741181;d60a982547bb350d8140d2ef6a3d1aeb SAMEA2238590 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461404/ERR461404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461404/ERR461404_2.fastq.gz 3927752 WGS 2082326-sc-2013-11-05T11:59:04Z-1749951 RANDOM 123706278;128466739 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461404/ERR461404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461404/ERR461404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461404/11861_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461404/11861_1#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461404/ERR461404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461404/ERR461404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461404/11861_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461404/11861_1#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 206241784;6505 ERS367402 ERX427745 GENOMIC 9016135 392775200 2014-03-18 SC_RUN_11861_1#27 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461404/11861_1#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461404/11861_1#27.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#27 ERR461400 SC_EXP_11861_1#23 225 da1bc1f4ae0061446d60b344e013ba35;4486ae746fa4154eddeb6ea83bbbb75d 1313 6b6f9a72b202c095e5bd6cb5259cbc93;423aa35911fb096d5b81a1b22ff9b154 SAMEA2238586 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461400/ERR461400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461400/ERR461400_2.fastq.gz 4011582 WGS 2082241-sc-2013-11-05T11:59:01Z-1749947 RANDOM 128198147;134201848 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461400/ERR461400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461400/ERR461400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461400/11861_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461400/11861_1#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461400/ERR461400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461400/ERR461400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461400/11861_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461400/11861_1#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 214299969;6567 ERS367398 ERX427741 GENOMIC 9016182 401158200 2014-03-18 SC_RUN_11861_1#23 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461400/11861_1#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461400/11861_1#23.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461270 SC_EXP_11860_7#81 206 924a4052ca329165b694eba2d35606cd;6cfcb356e85a00f1dceeec6155d55594 1313 5511d74d85ed71f9e123680828cd66e8;bdd44e784180eb71ad894d44027dc756 SAMEA2239120 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461270/ERR461270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461270/ERR461270_2.fastq.gz 4969680 WGS 2000267-sc-2013-11-05T12:08:15Z-1750490 RANDOM 158908300;165933074 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461270/ERR461270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461270/ERR461270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461270/11860_7#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461270/11860_7#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461270/ERR461270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461270/ERR461270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461270/11860_7#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461270/11860_7#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 265759328;8144 ERS367932 ERX427611 GENOMIC 9014886 496968000 2014-03-18 SC_RUN_11860_7#81 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461270/11860_7#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461270/11860_7#81.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#81 ERR064038 SC_EXP_6925_8#13 228 3c8132ddf540dedb9146634461892a58 1313 51631ac7c915e4bd4351bc37409a97f0;89ffe1bbf78a4d66c72773cfe2c12582 SAMEA1029149 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064038/ERR064038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064038/ERR064038_2.fastq.gz 3064834 WGS SMRU2533-sc-2011-01-27-1062746 RANDOM 193286474;185456904 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064038/ERR064038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064038/ERR064038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064038/6925_8#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064038/ERR064038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064038/ERR064038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064038/6925_8#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 471169288 ERS022043 ERX042011 GENOMIC 3686202 459725100 2012-03-19 SC_RUN_6925_8#13 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064038/6925_8#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR067814 SC_EXP_6972_3#23 229 84f9321c53bb3adce1355e66e539c63d 1313 a37ae32112d9499e04aca007fb1a7e32;b35ec233a295614bbea43528fa07b643 SAMEA1028938 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067814/ERR067814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067814/ERR067814_2.fastq.gz 5675897 WGS SMRU2591-sc-2011-01-27-1062804 RANDOM 352566889;356973070 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067814/ERR067814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067814/ERR067814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067814/6972_3#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067814/ERR067814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067814/ERR067814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067814/6972_3#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 894330829 ERS022101 ERX045677 GENOMIC 3686264 851384550 2012-01-16 SC_RUN_6972_3#23 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067814/6972_3#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069600 SC_EXP_7011_3#14 205 c78debfa4411ef19d42a839ea7577e85 1313 e4e1d1db458e733c43d53d7951784765;893d20acec6162e33d13fae61ff800bd SAMEA1029121 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069600/ERR069600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069600/ERR069600_2.fastq.gz 4260595 WGS SMRU2750-sc-2011-01-27-1062963 RANDOM 263203027;272710747 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069600/ERR069600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069600/ERR069600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069600/7011_3#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069600/ERR069600_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069600/ERR069600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069600/7011_3#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 677984250 ERS022260 ERX047453 GENOMIC 3758420 639089250 2012-01-19 SC_RUN_7011_3#14 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069600/7011_3#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR066227 SC_EXP_6983_3#52 241 95fae0321588a9a104b829e950e1cc04 1313 9b7cbfd52e114097de9d3e6dcb1e8ab2;40bf44b8a43ca3d1eaec42ddd18e5841 SAMEA1026078 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066227/ERR066227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066227/ERR066227_2.fastq.gz 4332605 WGS SMRU2260-sc-2011-01-27-1062473 RANDOM 307211056;310639645 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066227/ERR066227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066227/ERR066227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066227/6983_3#52.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066227/ERR066227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066227/ERR066227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066227/6983_3#52.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 754622237 ERS021769 ERX044090 GENOMIC 3594880 649890750 2012-01-10 SC_RUN_6983_3#52 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066227/6983_3#52.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057840 SC_EXP_6823_1#11 240 36713c7278ad5c2cb5d05d09168e4c6a 1313 fb7b4d9057f123bca32ea2498f661d5a;c5529811381833f0b3b6d98f30ed43bd SAMEA1026058 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057840/ERR057840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057840/ERR057840_2.fastq.gz 4809423 WGS SMRU1859-sc-2011-01-27-1062072 RANDOM 296470839;308278038 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057840/ERR057840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057840/ERR057840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057840/6823_1#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057840/ERR057840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057840/ERR057840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057840/6823_1#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 753185042 ERS021369 ERX035686 GENOMIC 3469088 721413450 2012-03-22 SC_RUN_6823_1#11 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057840/6823_1#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR059997 SC_EXP_6840_1#17 232 3ce04532bae10cb0551aa2a075dd35ed 1313 27ee74f90c45466ecb0446bc960d4805;153b99f8fc0bc05d04e17c81b36f2d50 SAMEA1026199 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059997/ERR059997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059997/ERR059997_2.fastq.gz 5532375 WGS SMRU1769-sc-2011-01-27-1061982 RANDOM 359896393;358800623 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059997/ERR059997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059997/ERR059997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059997/6840_1#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059997/ERR059997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059997/ERR059997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059997/6840_1#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 900304145 ERS021279 ERX037835 GENOMIC 3481286 829856250 2012-03-22 SC_RUN_6840_1#17 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR059/ERR059997/6840_1#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR2089429 SC_EXP_21999_7#167 478 89ac2ff9a8f0484c1b8b96d3e2f36d5c;b6884e9524aa520d7c70c35275082cc7 1313 3cb4c6d7ee0238422d64144262be57c9;bc13a0142c754eb270f1f488845f1d47 SAMEA104154693 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089429/ERR2089429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089429/ERR2089429_2.fastq.gz 2035666 WGS 6852c4a0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 42346945;46722533 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089429/ERR2089429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089429/ERR2089429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089429/21999_7#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089429/21999_7#167.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089429/ERR2089429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089429/ERR2089429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089429/21999_7#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089429/21999_7#167.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62199612;3397 ERS1813711 ERX2146223 GENOMIC DN476874P:H9 254458250 2017-08-08 SC_RUN_21999_7#167 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089429/21999_7#167.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089429/21999_7#167.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#167 ERR1788541 SC_EXP_21127_2#156 449 84377b9f98ee380cc112b2038cac38e7;67a1db41b8bf95953bdfecab61dd8e53 1313 10d7195c2fd5419bf25d9952c3c2ca43;b2010f8f56eaba0d3326f51acc9d3319 SAMEA4388104 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788541/ERR1788541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788541/ERR1788541_2.fastq.gz 2707216 WGS 49929dd0-5a14-11e6-af69-3c4a9275d6c8 RANDOM 59307557;60986796 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788541/ERR1788541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788541/ERR1788541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788541/21127_2#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788541/21127_2#156.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788541/ERR1788541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788541/ERR1788541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788541/21127_2#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788541/21127_2#156.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86369342;4426 ERS1299553 ERX1852264 GENOMIC DN465287Q:E8 338402000 2017-01-11 SC_RUN_21127_2#156 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788541/21127_2#156.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788541/21127_2#156.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#156 ERR1788475 SC_EXP_21127_2#90 461 851321111d392063f17bd83b4e2aac7e;29162cd2a67f4bc1dab722efc4393f51 1313 3dc334dcf84113a348e86fcd3cb5de60;5a44bab5516396b656ed6a95c7a9c4bb SAMEA4388071 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788475/ERR1788475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788475/ERR1788475_2.fastq.gz 2612312 WGS 41a18910-5a14-11e6-af69-3c4a9275d6c8 RANDOM 58374003;56860042 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788475/ERR1788475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788475/ERR1788475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788475/21127_2#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788475/21127_2#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788475/ERR1788475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788475/ERR1788475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788475/21127_2#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788475/21127_2#90.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82455031;4353 ERS1299520 ERX1852198 GENOMIC DN465286P:B12 326539000 2017-01-11 SC_RUN_21127_2#90 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788475/21127_2#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788475/21127_2#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#90 ERR1788372 SC_EXP_21127_1#175 431 16faef38ce0be7d3a09b3a5e65cf2ddb;28af07dd9ccd41212afbb19b51763e7e 1313 ca0bac776dfcc343dd94b2517561091a;13fcbb947b6e8b5cc78ad688e40242fd SAMEA4388346 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788372/ERR1788372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788372/ERR1788372_2.fastq.gz 3084974 WGS 4aca0f00-5256-11e6-9a3d-3c4a9275d6c8 RANDOM 55972198;58607488 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788372/ERR1788372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788372/ERR1788372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788372/21127_1#175.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788372/21127_1#175.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/002/ERR1788372/ERR1788372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/002/ERR1788372/ERR1788372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788372/21127_1#175.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788372/21127_1#175.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82051551;5084 ERS1299795 ERX1852095 GENOMIC DN465134A:A11 385621750 2017-01-11 SC_RUN_21127_1#175 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788372/21127_1#175.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788372/21127_1#175.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#175 ERR1453563 SC_EXP_19341_2#96 419 9d21e84852366401f3bebf27ad6a23ae;f65851e7a33269d0ced06986ba3fd11f 1313 713defc1bef7e9fa63b4d5d136f3476f;9dc3ddacecfb163766a0250df335b2d9 SAMEA3713888 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453563/ERR1453563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453563/ERR1453563_2.fastq.gz 2689802 WGS 385950b0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 53049653;59627051 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453563/ERR1453563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453563/ERR1453563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453563/19341_2#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453563/19341_2#96.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/003/ERR1453563/ERR1453563_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/003/ERR1453563/ERR1453563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453563/19341_2#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453563/19341_2#96.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80580662;4482 ERS1021037 ERX1524041 GENOMIC 15972573 336225250 2016-06-14 SC_RUN_19341_2#96 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453563/19341_2#96.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453563/19341_2#96.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#96 ERR1422563 SC_EXP_19084_8#50 436 65cb37a6611462c8f807a9046850ca09;b32e35a0b5178db347abf554a877f3a7 1313 0219ff0d3f7f2eb5e264fef6279460d9;b5ac2e76a907d9df699392318333dd9b SAMEA3714387 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422563/ERR1422563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422563/ERR1422563_2.fastq.gz 2649880 WGS 4e76a190-41bd-11e5-998e-3c4a9275d6c6 RANDOM 60455688;61081225 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422563/ERR1422563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422563/ERR1422563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422563/19084_8#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422563/19084_8#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422563/ERR1422563_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422563/ERR1422563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422563/19084_8#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422563/19084_8#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87374269;4441 ERS1021536 ERX1493145 GENOMIC 15758395 331235000 2016-05-24 SC_RUN_19084_8#50 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422563/19084_8#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422563/19084_8#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#50 ERR1422404 SC_EXP_19084_7#75 465 8bec1c1713161b2c4c54bfa35d469595;5e9a1c0731eac3ee6592e7d7a81b5950 1313 ad868398d453d28ef19aca85f6159770;b073553458423228bb2146aaed6bb569 SAMEA3714228 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422404/ERR1422404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422404/ERR1422404_2.fastq.gz 2662640 WGS 49264f60-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 58438088;58873820 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422404/ERR1422404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422404/ERR1422404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422404/19084_7#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422404/19084_7#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/004/ERR1422404/ERR1422404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/004/ERR1422404/ERR1422404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422404/19084_7#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422404/19084_7#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84518792;4470 ERS1021377 ERX1492986 GENOMIC 15738005 332830000 2016-05-24 SC_RUN_19084_7#75 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422404/19084_7#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422404/19084_7#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#75 ERR1202278 SC_EXP_17870_8#18 447 b1bb3d9d757a7749c4f1f5e8315ae61a;0682ba811be083d89cda3d5f93df3eaf 1313 c2e61439a5ef5da5500e75f15efd7f16;d8d0b66eee30440406113fd17c8a9f2f SAMEA3389839 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202278/ERR1202278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202278/ERR1202278_2.fastq.gz 2700754 WGS GPS_MW_D24847-sc-2296083 RANDOM 51477951;54179660 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202278/ERR1202278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202278/ERR1202278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202278/17870_8#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202278/17870_8#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202278/ERR1202278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202278/ERR1202278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202278/17870_8#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202278/17870_8#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78250536;4461 ERS725942 ERX1274520 GENOMIC 14977686 337594250 2016-01-12 SC_RUN_17870_8#18 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202278/17870_8#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202278/17870_8#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#18 ERR1191930 SC_EXP_17794_7#108 458 0a83b0424628ccda978f41efc511dee5;d1db4ad0bf91d87ee3a1be5821fab35c 1313 7480ed9731488a18e117b0560e634c75;cab009b5ed3cf59dc4194c6d8da1d3b7 SAMEA3381425 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191930/ERR1191930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191930/ERR1191930_2.fastq.gz 2641662 WGS GPS_GM_1937-sc-2279303 RANDOM 51122705;56083168 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191930/ERR1191930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191930/ERR1191930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191930/17794_7#108.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191930/17794_7#108.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1191930/ERR1191930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1191930/ERR1191930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191930/17794_7#108.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191930/17794_7#108.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84594257;4393 ERS719684 ERX1265314 GENOMIC 14934877 330207750 2015-12-17 SC_RUN_17794_7#108 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191930/17794_7#108.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191930/17794_7#108.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#108 ERR1106790 SC_EXP_17428_8#167 478 56ffcee8cffd4cb85e50bd902f7c8c70;5bb391620065bb60d2632bcae94ac2c4 1313 a7a6d9cc004817c0701207f6b9866429;f6c1d2afab1aea5fd79461a9b71d0653 SAMEA3381381 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/000/ERR1106790/ERR1106790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/000/ERR1106790/ERR1106790_2.fastq.gz 2361542 WGS GPS_GM_1893-sc-2279249 RANDOM 43348686;45353833 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/000/ERR1106790/ERR1106790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/000/ERR1106790/ERR1106790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106790/17428_8#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106790/17428_8#167.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/000/ERR1106790/ERR1106790_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/000/ERR1106790/ERR1106790_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106790/17428_8#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106790/17428_8#167.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68865679;3951 ERS719640 ERX1186321 GENOMIC 14702609 295192750 2015-11-03 SC_RUN_17428_8#167 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106790/17428_8#167.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106790/17428_8#167.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#167 ERR1066172 SC_EXP_17175_6#70 449 65c78159e98701fd363a8b5b4e8ec234;e20215698961a3c3e128997aac8999f0 1313 a6e3e5d7cf50a99e17516dece6d09949;3c7eb1c8269bd15b6e9800dda2512751 SAMEA3353859 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066172/ERR1066172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066172/ERR1066172_2.fastq.gz 5302188 WGS GPS_ZA_carriage_SP1775-sc-2278463 RANDOM 94926092;98214264 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066172/ERR1066172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066172/ERR1066172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066172/17175_6#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066172/17175_6#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066172/ERR1066172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066172/ERR1066172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066172/17175_6#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066172/17175_6#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 147560699;8680 ERS708214 ERX1146322 GENOMIC 14427596 662773500 2015-10-13 SC_RUN_17175_6#70 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066172/17175_6#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066172/17175_6#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#70 ERR1066078 SC_EXP_17175_5#66 463 9658d3330460666fdbcf8df0cf72ac31;93eae8b83dfb447ff92b79b6efd9d581 1313 d6cd56589fece7241d3b88cf65ee40cc;b93bed6d4c66fef618ad602f98bcf184 SAMEA3353670 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066078/ERR1066078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066078/ERR1066078_2.fastq.gz 4987716 WGS GPS_ZA_carriage_SP1678-sc-2278272 RANDOM 96441267;99212199 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066078/ERR1066078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066078/ERR1066078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066078/17175_5#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066078/17175_5#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066078/ERR1066078_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066078/ERR1066078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066078/17175_5#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066078/17175_5#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 148178387;8107 ERS708025 ERX1146228 GENOMIC 14423434 623464500 2015-10-13 SC_RUN_17175_5#66 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066078/17175_5#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066078/17175_5#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#66 ERR1066021 SC_EXP_17175_5#9 463 f8a661ad105108e4c9c83d46b631de9d;87fce7002ba6a641edb55edca96ee634 1313 7cf21a3f35a6ea6824ddd508f6418005;6d6464e352d37fe5492f05bc99464073 SAMEA3353554 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066021/ERR1066021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066021/ERR1066021_2.fastq.gz 6127868 WGS GPS_ZA_carriage_SP1619-sc-2278156 RANDOM 114159164;118868900 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066021/ERR1066021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066021/ERR1066021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066021/17175_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066021/17175_5#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1066021/ERR1066021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1066021/ERR1066021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066021/17175_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066021/17175_5#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 179836194;10126 ERS707909 ERX1146171 GENOMIC 14423391 765983500 2015-10-13 SC_RUN_17175_5#9 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066021/17175_5#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066021/17175_5#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#9 ERR1065998 SC_EXP_17175_4#79 467 f260413ad3b625338396e75e74a6e094;82001f0fc4684f7bd8718eb7ff7fb57c 1313 e4b83c09bbcdff7a8dbc76762ea4d72a;192565a05ee1a287ed65ea1a8edea375 SAMEA3353502 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065998/ERR1065998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065998/ERR1065998_2.fastq.gz 4887378 WGS GPS_ZA_carriage_SP1504-sc-2278102 RANDOM 86960352;91436528 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065998/ERR1065998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065998/ERR1065998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065998/17175_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065998/17175_4#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065998/ERR1065998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065998/ERR1065998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065998/17175_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065998/17175_4#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 135079233;8006 ERS707857 ERX1146148 GENOMIC 14436378 610922250 2015-10-13 SC_RUN_17175_4#79 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065998/17175_4#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065998/17175_4#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#79 ERR1065545 SC_EXP_17138_4#62 472 30ccd15e2f701b8e4e3cced385bd781f;180037d430f76ce2267affae8469e67b 1313 556d7c59d77803f2103433d6133ac21d;d0f74f009a2f392e2759ba44f093a81c SAMEA3354344 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065545/ERR1065545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065545/ERR1065545_2.fastq.gz 4456134 WGS GPS_ZA_carriage_SP2030-sc-2279000 RANDOM 90797784;89174216 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065545/ERR1065545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065545/ERR1065545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065545/17138_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065545/17138_4#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065545/ERR1065545_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065545/ERR1065545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065545/17138_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065545/17138_4#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 133101689;7385 ERS708699 ERX1145695 GENOMIC 14468620 557016750 2015-10-13 SC_RUN_17138_4#62 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065545/17138_4#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065545/17138_4#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#62 ERR1065409 SC_EXP_17138_3#19 472 7e7454c6b7d206eaa5459803327280fc;b1148371ad222c426d0521f4d40642ba 1313 bcd041ff0df7c7e7affad51f26c03596;d2033020a858ada8639a198bc0de8d51 SAMEA3354121 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065409/ERR1065409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065409/ERR1065409_2.fastq.gz 4920932 WGS GPS_ZA_carriage_SP1915-sc-2278729 RANDOM 103756622;101034649 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065409/ERR1065409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065409/ERR1065409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065409/17138_3#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065409/17138_3#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065409/ERR1065409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065409/ERR1065409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065409/17138_3#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065409/17138_3#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 154675461;8087 ERS708476 ERX1145559 GENOMIC 14438279 615116500 2015-10-13 SC_RUN_17138_3#19 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065409/17138_3#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065409/17138_3#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#19 ERR997525 SC_EXP_16399_5#64 228 7a5597d445052db25f05909303a18d66;b28378f0ceab3ce9a91f89cd4a92e70e 1313 51f7acd3892bba9d2fe8e2e393705a73;4af4e59441b6df3478a4493edfbcf868 SAMEA3309554 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997525/ERR997525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997525/ERR997525_2.fastq.gz 5660684 WGS GPS_GM_1573-sc-2206356 RANDOM 178699366;185143305 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997525/ERR997525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997525/ERR997525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997525/16399_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997525/16399_5#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997525/ERR997525_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997525/ERR997525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997525/16399_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997525/16399_5#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294392149;9114 ERS686016 ERX1076561 GENOMIC 13835555 566068400 2015-09-04 SC_RUN_16399_5#64 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997525/16399_5#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997525/16399_5#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#64 ERR980092 SC_EXP_16288_5#54 218 3f1be540dc595f0a31a18a96365693ee;624f8599db847e30fdb2781769850103 1313 45eff044de60e433c7061b807a144e53;6f5b75bbb671d2b30b3d2b8fb4dfeafa SAMEA3232563 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980092/ERR980092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980092/ERR980092_2.fastq.gz 4698456 WGS GPS_NP_3036-sc-2205481 RANDOM 163452973;163937778 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980092/ERR980092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980092/ERR980092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980092/16288_5#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980092/16288_5#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980092/ERR980092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980092/ERR980092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980092/16288_5#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980092/16288_5#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265401569;7424 ERS653774 ERX1056964 GENOMIC 13296396 469845600 2015-08-12 SC_RUN_16288_5#54 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980092/16288_5#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980092/16288_5#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#54 ERR909141 SC_EXP_15841_4#7 228 1f2f1b0c9a4ab58e7054c11134817e6c;a212018e94c067fbf4a7c231fb22704c 1313 f2763bf9cf33f2d65161cd762c64518b;5c33b3fdd65b3d6bad456869ee464b01 SAMEA3208748 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909141/ERR909141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909141/ERR909141_2.fastq.gz 6039946 WGS GPS_ZA_carriage_SP833-sc-2204883 RANDOM 190337417;197552508 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909141/ERR909141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909141/ERR909141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909141/15841_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909141/15841_4#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909141/ERR909141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909141/ERR909141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909141/15841_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909141/15841_4#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 315138680;9655 ERS639850 ERX988396 GENOMIC 13267977 603994600 2015-06-09 SC_RUN_15841_4#7 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909141/15841_4#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909141/15841_4#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#7 ERR884336 SC_EXP_15682_1#38 218 022863d4ce9352819b7f6ede4ddac098;08814b6c91323ad91fb740c04459ebbe 1313 84048b69e36463c7ccafeed43a0d8584;be9213549d05294d6b0e18737ae01023 SAMEA3176022 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884336/ERR884336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884336/ERR884336_2.fastq.gz 4275538 WGS GPS_PL_6002_09-sc-2191079 RANDOM 142996717;148451267 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884336/ERR884336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884336/ERR884336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884336/15682_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884336/15682_1#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884336/ERR884336_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884336/ERR884336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884336/15682_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884336/15682_1#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 235194944;6729 ERS628970 ERX963739 GENOMIC 13029568 427553800 2015-05-21 SC_RUN_15682_1#38 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884336/15682_1#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884336/15682_1#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#38 ERR884363 SC_EXP_15682_1#65 218 c533da6044ad1e4f1c98f84e164dfe5d;196fee2dfa2dc564c1d3b1ddf82fa689 1313 2c7dadb96f728d8c73310927fd380c09;a3c7e1399db52518783e5c39a8997385 SAMEA3176061 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884363/ERR884363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884363/ERR884363_2.fastq.gz 4585118 WGS GPS_PL_4142_10-sc-2191118 RANDOM 149514118;154383887 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884363/ERR884363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884363/ERR884363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884363/15682_1#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884363/15682_1#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884363/ERR884363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884363/ERR884363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884363/15682_1#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884363/15682_1#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246719589;7421 ERS629009 ERX963766 GENOMIC 13029512 458511800 2015-05-21 SC_RUN_15682_1#65 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884363/15682_1#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884363/15682_1#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#65 ERR876470 SC_EXP_15608_2#40 215 0e92321640bdab4751bba381c5c55e51;e5527194150e780c401de4dc0737e907 1313 814233d7c9a598c802a388be5fbc8faa;e0f173ade3ffd6526130d9e82890cc51 SAMEA3175685 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876470/ERR876470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876470/ERR876470_2.fastq.gz 5689590 WGS GPS_US_4378_03_R1-sc-2190734 RANDOM 179368122;185728255 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876470/ERR876470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876470/ERR876470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876470/15608_2#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876470/15608_2#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876470/ERR876470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876470/ERR876470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876470/15608_2#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876470/15608_2#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295179346;8904 ERS628633 ERX956033 GENOMIC 13024253 568959000 2015-05-12 SC_RUN_15608_2#40 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876470/15608_2#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876470/15608_2#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#40 ERR908983 SC_EXP_15841_2#39 229 868c6591906fae5da4e373747da5a6f7;1f3fe5b814542dc054ad4a8fdfa68252 1313 f91da507daa9db50a0f4ce6bf5ba50df;8902bda3ae91a555c8c2ad0e3c4b2ae5 SAMEA3207234 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908983/ERR908983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908983/ERR908983_2.fastq.gz 4934134 WGS GPS_ZA_carriage_SP647-sc-2192173 RANDOM 159366750;164949322 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908983/ERR908983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908983/ERR908983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908983/15841_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908983/15841_2#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908983/ERR908983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908983/ERR908983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908983/15841_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908983/15841_2#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261985989;7863 ERS639244 ERX988238 GENOMIC 13265156 493413400 2015-06-09 SC_RUN_15841_2#39 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908983/15841_2#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908983/15841_2#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#39 ERR900659 SC_EXP_15731_8#14 230 3753586fcb33b20438c23fe4caebbc68;0a0e4af7b1db7389bc2e2aa67969f37e 1313 d248f918c735e250023e91473b9f0f39;17de53bdbc7a232c88e76ed2e5b4f8b2 SAMEA3206639 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900659/ERR900659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900659/ERR900659_2.fastq.gz 5634988 WGS GPS_ZA_carriage_SP62-sc-2191572 RANDOM 171113646;178743584 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900659/ERR900659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900659/ERR900659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900659/15731_8#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900659/15731_8#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900659/ERR900659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900659/ERR900659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900659/15731_8#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900659/15731_8#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282559643;9052 ERS638649 ERX980048 GENOMIC 13208935 563498800 2015-05-26 SC_RUN_15731_8#14 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900659/15731_8#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900659/15731_8#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#14 ERR862458 SC_EXP_15378_4#10 205 dfe0a1ca201d6ec525c2da610d0c771c;a223088898deb6579cb327ce1746de79 1313 2be01d9a48ef75582db5e9eb09cb5928;7fa313434b1184bc1b7cdfecff27befa SAMEA3171142 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862458/ERR862458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862458/ERR862458_2.fastq.gz 3942698 WGS GPS_MW_4786-sc-2139705 RANDOM 131651743;135102425 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862458/ERR862458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862458/ERR862458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862458/15378_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862458/15378_4#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862458/ERR862458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862458/ERR862458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862458/15378_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862458/15378_4#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 216940182;6420 ERS625533 ERX942108 GENOMIC 12826878 394269800 2015-04-21 SC_RUN_15378_4#10 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862458/15378_4#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862458/15378_4#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#10 ERR773863 SC_EXP_14913_2#49 226 66b24a4ed24c28829d6adb9cfb62fe72;b61e0abaf8ca806c94803b92516ec895 1313 66ddfa5b0f45713a32ec34a8ef0d7d76;fed1409bdf513c6a6480ae0e6af691ac SAMEA2814089 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773863/ERR773863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773863/ERR773863_2.fastq.gz 4831782 WGS GPS_ZA_2281-sc-2022573 RANDOM 162676786;169056532 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773863/ERR773863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773863/ERR773863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773863/14913_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773863/14913_2#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773863/ERR773863_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773863/ERR773863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773863/14913_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773863/14913_2#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270410181;7689 ERS566457 ERX716742 GENOMIC 12395890 483178200 2015-03-03 SC_RUN_14913_2#49 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773863/14913_2#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773863/14913_2#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#49 ERR774611 SC_EXP_14936_5#47 211 8d3e00e0eeb7f7d453001dcd61da2166;691a4fad6f068b39635eada4771f7d2d 1313 a2d345cc956dac99d8d08a3d4e619764;e65dae1d5b14355aafa83905e11e05ac SAMEA2783683 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774611/ERR774611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774611/ERR774611_2.fastq.gz 4682586 WGS GPS_MW_1435_R1-sc-2022178 RANDOM 170205363;172707084 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774611/ERR774611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774611/ERR774611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774611/14936_5#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774611/14936_5#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774611/ERR774611_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774611/ERR774611_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774611/14936_5#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774611/14936_5#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 284702795;7590 ERS553428 ERX717490 GENOMIC 12403541 468258600 2015-03-03 SC_RUN_14936_5#47 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774611/14936_5#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774611/14936_5#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#47 ERR774700 SC_EXP_14936_6#43 220 894f9fa05b69853e3cdf1cdf3e834885;19ad5ebe31761fec61f49a5e3ba93014 1313 e3ece97fd194c5622e34cfed888abc03;8cc615d7a739d5458e422ddd7540eed8 SAMEA2783852 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774700/ERR774700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774700/ERR774700_2.fastq.gz 4796976 WGS GPS_MW_BQN14A-sc-2022348 RANDOM 175807081;176764727 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774700/ERR774700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774700/ERR774700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774700/14936_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774700/14936_6#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774700/ERR774700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774700/ERR774700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774700/14936_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774700/14936_6#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289502029;7471 ERS553597 ERX717579 GENOMIC 12318473 479697600 2015-03-03 SC_RUN_14936_6#43 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774700/14936_6#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774700/14936_6#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_6#43 ERR774702 SC_EXP_14936_6#45 220 712bf2eb83233a1531e16412faeccd08;3764e5afee19e39e1a0372ad8ee20599 1313 49a416db0ce9b4e3e4617049d766d778;ef552b070ef25cb0062ac56d06516e1d SAMEA2783856 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774702/ERR774702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774702/ERR774702_2.fastq.gz 4798356 WGS GPS_MW_BQN14E-sc-2022352 RANDOM 176627435;177464966 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774702/ERR774702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774702/ERR774702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774702/14936_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774702/14936_6#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774702/ERR774702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774702/ERR774702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774702/14936_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774702/14936_6#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291735112;7489 ERS553601 ERX717581 GENOMIC 12318497 479835600 2015-03-03 SC_RUN_14936_6#45 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774702/14936_6#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774702/14936_6#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_6#45 ERR750838 SC_EXP_14723_2#15 226 7b60b022b1921e148380fce1a88e881d;af7c0c023e6fbcc793709b320136a67c 1313 5beb86bb1c42898a38e3f83886bc4aaf;431d2a0c158696f92d48133b97446762 SAMEA2797088 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750838/ERR750838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750838/ERR750838_2.fastq.gz 6802504 WGS GPS_US_PATH3637-sc-2139115 RANDOM 250826661;254795289 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750838/ERR750838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750838/ERR750838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750838/14723_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750838/14723_2#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750838/ERR750838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750838/ERR750838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750838/14723_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750838/14723_2#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 421418405;10884 ERS558699 ERX694520 GENOMIC 12133653 680250400 2015-02-03 SC_RUN_14723_2#15 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750838/14723_2#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750838/14723_2#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#15 ERR600515 SC_EXP_13415_6#15 231 2a30542fc3b33f5e35a25f61029c06de;b45eaf2289311d79ab25dd950fb49e51 1313 6bd23e0997ab5fa21a1872dcd5ffcb25;bbadee3f56545714260907a34a667cc8 SAMEA2554030 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600515/ERR600515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600515/ERR600515_2.fastq.gz 4989404 WGS GPS_ZA_919-sc-1951066 RANDOM 167713241;173320641 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600515/ERR600515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600515/ERR600515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600515/13415_6#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600515/13415_6#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600515/ERR600515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600515/ERR600515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600515/13415_6#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600515/13415_6#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280141172;8080 ERS464531 ERX557344 GENOMIC 10631348 498940400 2014-09-16 SC_RUN_13415_6#15 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600515/13415_6#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600515/13415_6#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#15 ERR751118 SC_EXP_14723_6#16 216 c7617902ef8ec47cb36343875310cdc9;fd1c359777ae8543e1c9f8ba7590e876 1313 7a07b5a77cb7267f3c9782fd6e2ad91a;00c84b3cc558a8c49176cf1355816fc3 SAMEA2797412 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751118/ERR751118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751118/ERR751118_2.fastq.gz 6311882 WGS GPS_US_PATH5582-sc-2139404 RANDOM 234411720;238258733 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751118/ERR751118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751118/ERR751118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751118/14723_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751118/14723_6#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751118/ERR751118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751118/ERR751118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751118/14723_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751118/14723_6#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 392718244;10011 ERS559023 ERX694800 GENOMIC 12134063 631188200 2015-02-03 SC_RUN_14723_6#16 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751118/14723_6#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751118/14723_6#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_6#16 ERR751161 SC_EXP_14723_6#59 216 fa6286685591ea83540336dd756a7878;ddedb85b46707df8963374487f925531 1313 a9452892e9b269646ae6f4c3ac7fa4bb;b4376c339f7323a80a18f0ad0aab184b SAMEA2797455 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751161/ERR751161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751161/ERR751161_2.fastq.gz 5330384 WGS GPS_US_PATH6447-sc-2139447 RANDOM 194170064;197020198 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751161/ERR751161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751161/ERR751161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751161/14723_6#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751161/14723_6#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751161/ERR751161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751161/ERR751161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751161/14723_6#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751161/14723_6#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 323722586;8613 ERS559066 ERX694843 GENOMIC 12134009 533038400 2015-02-03 SC_RUN_14723_6#59 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751161/14723_6#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751161/14723_6#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_6#59 ERR570403 SC_EXP_12837_5#2 238 8984ca55b89dc0219683232647a3b8ab;91c1bae7edb9c22cad7bf695ec5c936d 1313 a7ed57fc441db213746155dfb98aaae2;fb37b075f50f794f320d2173e4abc8ec SAMEA2434766 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570403/ERR570403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570403/ERR570403_2.fastq.gz 6328010 WGS SA_GPS_SP661-sc-1895832 RANDOM 211684151;215126629 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570403/ERR570403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570403/ERR570403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570403/12837_5#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570403/12837_5#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570403/ERR570403_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570403/ERR570403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570403/12837_5#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570403/12837_5#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 354028888;10324 ERS428943 ERX529392 GENOMIC 9993226 632801000 2014-07-28 SC_RUN_12837_5#2 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570403/12837_5#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570403/12837_5#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#2 ERR461778 SC_EXP_11861_5#40 221 0ad346488e8c48b565f71071c2857f6b;318755085184ff1ea7972bd892ebb21a 1313 ebada550c23ca15c1550140783dbf617;a5f56183442d9105c19bc57c5ee41f53 SAMEA2239266 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461778/ERR461778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461778/ERR461778_2.fastq.gz 3665760 WGS 2012243-sc-2013-11-05T12:10:47Z-1750638 RANDOM 112982975;118164116 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461778/ERR461778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461778/ERR461778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461778/11861_5#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461778/11861_5#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461778/ERR461778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461778/ERR461778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461778/11861_5#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461778/11861_5#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 188433606;6058 ERS368078 ERX428119 GENOMIC 9017903 366576000 2014-03-18 SC_RUN_11861_5#40 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461778/11861_5#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461778/11861_5#40.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461763 SC_EXP_11861_5#24 221 86ea5538db85d5a885c7ccdceda97625;76741ef5bcafe0848e69c0afe08fed3f 1313 a61a678a3c8b55856ff3e29b864e41a8;7ea17988f22387d258759e95406f6d66 SAMEA2239251 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461763/ERR461763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461763/ERR461763_2.fastq.gz 3805838 WGS 2011124-sc-2013-11-05T12:10:32Z-1750623 RANDOM 118650295;124437896 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461763/ERR461763_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461763/ERR461763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461763/11861_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461763/11861_5#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461763/ERR461763_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461763/ERR461763_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461763/11861_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461763/11861_5#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 198147574;6246 ERS368063 ERX428104 GENOMIC 9017901 380583800 2014-03-18 SC_RUN_11861_5#24 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461763/11861_5#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461763/11861_5#24.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#24 ERR425407 SC_EXP_11511_7#55 224 4f1df16f383019eb032a3eafcfd23e86;1eed7bbdd9dab9c3907e17c392a3d717 1313 d7346e682c883dc48ce4cec5e671f5c7;596b442d431fe918786271279027bb8d SAMEA2157568 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425407/ERR425407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425407/ERR425407_2.fastq.gz 4232828 WGS 2062_00-sc-2013-07-03T13:30:01Z-1659228 RANDOM 140822871;144202116 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425407/ERR425407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425407/ERR425407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425407/11511_7#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425407/11511_7#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425407/ERR425407_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425407/ERR425407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425407/11511_7#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425407/11511_7#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 233652442;6789 ERS322404 ERX391682 GENOMIC 8520743 423282800 2014-02-10 SC_RUN_11511_7#55 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425407/11511_7#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425407/11511_7#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#55 ERR449172 SC_EXP_11822_1#83 252 2978cf6cf132e273cec944b078a3bd06;649829536f734a753f2c18d7daa73ae1 1313 555dad53f8a299820758721833fb62fc;356637d82de45f07b094b009d8309f90 SAMEA2147034 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449172/ERR449172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449172/ERR449172_2.fastq.gz 5365252 WGS 0518_99-sc-2013-07-03T13:36:28Z-1659412 RANDOM 179891655;186948828 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449172/ERR449172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449172/ERR449172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449172/11822_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449172/11822_1#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449172/ERR449172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449172/ERR449172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449172/11822_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449172/11822_1#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302994675;8658 ERS322583 ERX415544 GENOMIC 8966800 536525200 2014-03-04 SC_RUN_11822_1#83 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449172/11822_1#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449172/11822_1#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_1#83 ERR460205 SC_EXP_11893_8#26 250 d046be035b78b8c307969d2c3886e4be;5ccab1a156bbac79ffa3d48e709f3481 1313 1da9dca0c6a30a5a5e08b0a18ed17609;f72563f2e51b945c93c8fd33904f74ba SAMEA2204065 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460205/ERR460205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460205/ERR460205_2.fastq.gz 8289956 WGS PATH2221-sc-2013-10-09T11:54:37Z-1712657 RANDOM 280854435;285296490 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460205/ERR460205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460205/ERR460205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460205/11893_8#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460205/11893_8#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460205/ERR460205_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460205/ERR460205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460205/11893_8#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460205/11893_8#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 465940067;13765 ERS356576 ERX426546 GENOMIC 9028927 828995600 2014-03-18 SC_RUN_11893_8#26 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460205/11893_8#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460205/11893_8#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA294544 11893_8#26 ERR048178 SC_EXP_6631_6#21 211 98483df40adcbad03cdbcb3ca1e1c388 1313 d7e465bf2a11439dcba0aa4a040da2d9;11b1b311abbcd62d288a771b86030e63 SAMEA1024077 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048178/ERR048178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048178/ERR048178_2.fastq.gz 7398695 WGS SMRU501-sc-2011-01-27-1060690 RANDOM 488427181;502846472 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048178/ERR048178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048178/ERR048178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048178/6631_6#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048178/ERR048178_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048178/ERR048178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048178/6631_6#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1228978833 ERS019659 ERX025241 GENOMIC 3037820 1109804250 2011-10-11 SC_RUN_6631_6#21 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048178/6631_6#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054435 SC_EXP_6753_1#22 224 b779397769f4ed1b2e44af7a3379b82b 1313 94f163e36e12f7aae79c2275599323d4;e385e91e69b78d192d328e69cddf183a SAMEA1025279 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054435/ERR054435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054435/ERR054435_2.fastq.gz 5558107 WGS SMRU1486-sc-2011-01-27-1061699 RANDOM 296848359;302572382 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054435/ERR054435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054435/ERR054435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054435/6753_1#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054435/ERR054435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054435/ERR054435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054435/6753_1#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 747904209 ERS020996 ERX031481 GENOMIC 3414170 833716050 2011-11-15 SC_RUN_6753_1#22 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054435/6753_1#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054546 SC_EXP_6755_2#14 204 bbff3ee916e2185a7a47db270870caa0 1313 15ef4197e57752d31e8a31d1c2172035;d42b1e52809eed97ba095b7cfd2976f8 SAMEA1025076 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054546/ERR054546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054546/ERR054546_2.fastq.gz 3723661 WGS SMRU806-sc-2011-01-27-1060995 RANDOM 181329063;190378010 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054546/ERR054546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054546/ERR054546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054546/6755_2#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054546/ERR054546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054546/ERR054546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054546/6755_2#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 458674009 ERS020316 ERX031592 GENOMIC 3152315 558549150 2011-11-15 SC_RUN_6755_2#14 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054546/6755_2#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR056797 SC_EXP_6805_3#19 233 f3fdef04208710d8ca700f8061aa7c15 1313 ae838d0ec9895f06b28dff3f1c998256;df16f6415307882e71e5e8f8df77a3c8 SAMEA1025462 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056797/ERR056797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056797/ERR056797_2.fastq.gz 6269336 WGS SMRU1459-sc-2011-01-27-1061672 RANDOM 335845672;347146455 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056797/ERR056797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056797/ERR056797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056797/6805_3#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056797/ERR056797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056797/ERR056797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056797/6805_3#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 848830448 ERS020969 ERX034641 GENOMIC 3441228 940400400 2011-11-29 SC_RUN_6805_3#19 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056797/6805_3#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056787 SC_EXP_6805_3#9 233 56316874001b05ab45c8479826792589 1313 73b081449fa085dc450668b7725e7d4c;bbbdd7ff9d22c0203d5abee34aa43be9 SAMEA1025285 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056787/ERR056787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056787/ERR056787_2.fastq.gz 6716830 WGS SMRU1449-sc-2011-01-27-1061662 RANDOM 346759552;358945383 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056787/ERR056787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056787/ERR056787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056787/6805_3#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056787/ERR056787_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056787/ERR056787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056787/6805_3#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 898088704 ERS020959 ERX034631 GENOMIC 3441218 1007524500 2011-11-29 SC_RUN_6805_3#9 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056787/6805_3#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR084218 SC_EXP_7038_6#16 252 8a3843d626821c4f29f7c7d0212b8228 1313 e5d4408f71e769d70d8f85bd49f611dd;634ae500436d740cd12f9f0d45e75f72 SAMEA1029404 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084218/ERR084218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084218/ERR084218_2.fastq.gz 5195914 WGS SMRU2992-sc-2011-01-27-1063205 RANDOM 346055383;351727359 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084218/ERR084218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084218/ERR084218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084218/7038_6#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084218/ERR084218_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084218/ERR084218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084218/7038_6#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1301283740 ERS022502 ERX061984 GENOMIC 3811699 779387100 2012-02-07 SC_RUN_7038_6#16 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084218/7038_6#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR056757 SC_EXP_6805_2#3 234 50ad9f045fc17099c61319e25fc7047c 1313 62f3007c25d3b39820adb06308fb0ecb;f4b615f190de9a9e3fef8d9387a1b7f1 SAMEA1025229 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056757/ERR056757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056757/ERR056757_2.fastq.gz 6200043 WGS SMRU1419-sc-2011-01-27-1061632 RANDOM 319456298;335877082 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056757/ERR056757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056757/ERR056757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056757/6805_2#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056757/ERR056757_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056757/ERR056757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056757/6805_2#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 815751773 ERS020929 ERX034601 GENOMIC 3441177 930006450 2011-11-29 SC_RUN_6805_2#3 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056757/6805_2#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR039632 SC_EXP_6259_8#1 183 da0c14878a9f7659725e59442ecc33e7 1313 7c03a4cc9a956d3aa2ef71010204c643;f0c6add5fc864e544a99a95c363c177f SAMEA974636 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039632/ERR039632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039632/ERR039632_2.fastq.gz 4477685 WGS SMRU73-sc-2011-01-27-1026498 RANDOM 243750654;254415733 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039632/ERR039632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039632/ERR039632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039632/6259_8#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039632/ERR039632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039632/ERR039632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039632/6259_8#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 610745187 ERS019231 ERX016805 GENOMIC 2591003 671652750 2011-07-27 SC_RUN_6259_8#1 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039632/6259_8#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR056865 SC_EXP_6805_6#15 238 0793943f2c954298bb412bcb3bc0bed4 1313 965a3b4e63f77110e51c66093868a88e;f89c1c119a4869740d837aad9f7798e4 SAMEA1025386 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056865/ERR056865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056865/ERR056865_2.fastq.gz 5319085 WGS SMRU1719-sc-2011-01-27-1061932 RANDOM 267999577;273953873 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056865/ERR056865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056865/ERR056865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056865/6805_6#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056865/ERR056865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056865/ERR056865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056865/6805_6#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 689867018 ERS021229 ERX034709 GENOMIC 3481209 797862750 2011-11-29 SC_RUN_6805_6#15 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056865/6805_6#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR049988 SC_EXP_6680_5#5 231 ba53de869e330264080f279fd1a804d8 1313 61c1638355a84e4a068e233e8efb104c;52752c8d5bbe50c709e894dac1c81ce4 SAMEA1024717 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049988/ERR049988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049988/ERR049988_2.fastq.gz 4440598 WGS SMRU917-sc-2011-01-27-1061130 RANDOM 224590250;232012061 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049988/ERR049988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049988/ERR049988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049988/6680_5#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049988/ERR049988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049988/ERR049988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049988/6680_5#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 590509539 ERS020427 ERX027048 GENOMIC 3178592 666089700 2011-11-07 SC_RUN_6680_5#5 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049988/6680_5#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR2090924 SC_EXP_22841_3#3 398 a859ca811264f919affac683f5e20adf;513309c14c77c819a73e0f27c46d6515 1313 979650e2b5ae5253cccf031264656003;c801d95d4ad4b6970e64a215f2d028d7 SAMEA104035776 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090924/ERR2090924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090924/ERR2090924_2.fastq.gz 2459954 WGS bbd80070-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55818925;56556052 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090924/ERR2090924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090924/ERR2090924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090924/22841_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090924/22841_3#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090924/ERR2090924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090924/ERR2090924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090924/22841_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090924/22841_3#3.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79186836;4104 ERS1699669 ERX2147718 GENOMIC DN483669F:C1 307494250 2017-08-08 SC_RUN_22841_3#3 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090924/22841_3#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090924/22841_3#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#3 ERR2090859 SC_EXP_22841_2#128 381 ae4d18be30d106a4a833ceff9962c08f;cd94288383d15b859a8d2cba3e47f5a1 1313 febbd86541ebd0d661b83d4d815c719e;d1fc46152c4ed0cea6ba057d9edd48d0 SAMEA104035708 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090859/ERR2090859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090859/ERR2090859_2.fastq.gz 2135222 WGS b93f7b40-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 46035934;50207893 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090859/ERR2090859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090859/ERR2090859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090859/22841_2#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090859/22841_2#128.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090859/ERR2090859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090859/ERR2090859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090859/22841_2#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090859/22841_2#128.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67426184;3625 ERS1699601 ERX2147653 GENOMIC DN483654V:A5 266902750 2017-08-08 SC_RUN_22841_2#128 98 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090859/22841_2#128.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090859/22841_2#128.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#128 ERR2089547 SC_EXP_21999_8#102 455 31c49fb240cebf7953fb7c22048be9b9;6905997e217f66cba8e545dbb1856f83 1313 05773fcce5f1573e3cbbb03be9baed44;1420c05e77bca4b81cf1436260a7f641 SAMEA104154814 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089547/ERR2089547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089547/ERR2089547_2.fastq.gz 727808 WGS 79e8dfb0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 14555618;15625070 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089547/ERR2089547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089547/ERR2089547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089547/21999_8#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089547/21999_8#102.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089547/ERR2089547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089547/ERR2089547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089547/21999_8#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089547/21999_8#102.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 19318567;1262 ERS1813832 ERX2146341 GENOMIC DN476960M:F2 90976000 2017-08-08 SC_RUN_21999_8#102 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089547/21999_8#102.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089547/21999_8#102.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#102 ERR2089393 SC_EXP_21999_7#131 474 5517b316f5d17621310dad2cad2cf093;700477bf7fd43dac36d28b3170ee5ac6 1313 d5a959e39118816a05980da7c52424de;344ed272050ec975ffd52989aaf8b11b SAMEA104154658 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089393/ERR2089393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089393/ERR2089393_2.fastq.gz 1971754 WGS 66c323f0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 41286454;45594585 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089393/ERR2089393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089393/ERR2089393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089393/21999_7#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089393/21999_7#131.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089393/ERR2089393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089393/ERR2089393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089393/21999_7#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089393/21999_7#131.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 60602556;3324 ERS1813676 ERX2146187 GENOMIC DN476874P:D5 246469250 2017-08-08 SC_RUN_21999_7#131 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089393/21999_7#131.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089393/21999_7#131.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#131 ERR2089503 SC_EXP_21999_8#58 442 93fe40b4445e80202e6c0c37dab447a8;b4d03b442965d1723b9482ba87b19b41 1313 2d43c7197d1e76ab151a83722ae9e2f4;f1239f3400e4fdd9199ce96665c79ce5 SAMEA104154768 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089503/ERR2089503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089503/ERR2089503_2.fastq.gz 3073042 WGS 71807810-c37a-11e6-b158-3c4a9275d6c8 RANDOM 55293793;57581390 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089503/ERR2089503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089503/ERR2089503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089503/21999_8#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089503/21999_8#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089503/ERR2089503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089503/ERR2089503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089503/21999_8#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089503/21999_8#58.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78504563;5043 ERS1813786 ERX2146297 GENOMIC DN476959T:B8 384130250 2017-08-08 SC_RUN_21999_8#58 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089503/21999_8#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089503/21999_8#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#58 ERR2089388 SC_EXP_21999_7#126 461 b49fb73e36e98a6d336d082a506fdf0b;7fade12eb958df36b0be78ea20ba3522 1313 172bd0c8cf453998fbfb83ddb3898089;fa721688ef58328b43367124db8c53e6 SAMEA104154653 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089388/ERR2089388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089388/ERR2089388_2.fastq.gz 1998512 WGS 6685a5c0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 42127354;45479458 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089388/ERR2089388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089388/ERR2089388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089388/21999_7#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089388/21999_7#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089388/ERR2089388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089388/ERR2089388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089388/21999_7#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089388/21999_7#126.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 60955373;3339 ERS1813671 ERX2146182 GENOMIC DN476874P:G4 249814000 2017-08-08 SC_RUN_21999_7#126 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089388/21999_7#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089388/21999_7#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#126 ERR1795485 SC_EXP_21242_2#154 461 3dfd39c500a7e5b25950738e7aa101c0;614fc072acd5fc8311bf91b471f38fc6 1313 5c15992b1e0319d9c8aecd64c9fa33cf;e4b270e6ed99fc5bf2b2d233393fe0f6 SAMEA4388140 2017-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1795485/ERR1795485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1795485/ERR1795485_2.fastq.gz 3307424 WGS 4c61c360-5a14-11e6-af69-3c4a9275d6c8 RANDOM 60955324;62211136 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1795485/ERR1795485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/005/ERR1795485/ERR1795485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795485/21242_2#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795485/21242_2#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/005/ERR1795485/ERR1795485_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/005/ERR1795485/ERR1795485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795485/21242_2#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1795485/21242_2#154.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89067012;5419 ERS1299589 ERX1859215 GENOMIC DN466023V:H10 413428000 2017-01-16 SC_RUN_21242_2#154 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1795485/21242_2#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1795485/21242_2#154.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA789533 21242_2#154 ERR1202171 SC_EXP_17870_7#101 463 5317d02b65f380bb89e15ba3e519b26b;b4e4711210b6821c0afe35dfe4b57399 1313 ee4ef5c0a84db28267c449284777c406;f16bf17e9dfde13ef97722270ea71ea0 SAMEA3389405 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202171/ERR1202171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202171/ERR1202171_2.fastq.gz 2414650 WGS GPS_MW_BND1HE-sc-2295880 RANDOM 46682167;49975545 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202171/ERR1202171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202171/ERR1202171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202171/17870_7#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202171/17870_7#101.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202171/ERR1202171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202171/ERR1202171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202171/17870_7#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202171/17870_7#101.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72530681;3994 ERS725508 ERX1274413 GENOMIC 14978431 301831250 2016-01-12 SC_RUN_17870_7#101 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202171/17870_7#101.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202171/17870_7#101.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#101 ERR1202156 SC_EXP_17870_7#86 463 de70f7dc8e1eb071dcbe110a33de3993;34f1ac5695f11245c0343ad579c171f8 1313 522f86c39421df4b59a8072ea1fc72d2;baf812887947de43c63759d19ea219db SAMEA3389374 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202156/ERR1202156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202156/ERR1202156_2.fastq.gz 3347934 WGS GPS_MW_BND1F9-sc-2295849 RANDOM 64364139;67360561 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202156/ERR1202156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202156/ERR1202156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202156/17870_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202156/17870_7#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202156/ERR1202156_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202156/ERR1202156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202156/17870_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202156/17870_7#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 99609671;5472 ERS725477 ERX1274398 GENOMIC 14978344 418491750 2016-01-12 SC_RUN_17870_7#86 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202156/17870_7#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202156/17870_7#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#86 ERR1202133 SC_EXP_17870_7#63 463 0be45697e00b0aefe3d4ee60f3798daf;728c01106ac7eb8c3b33f3daaae0ab58 1313 da2a3c2adeeb442aae690ff573624155;1e92796a85151550546dd988d19ce74e SAMEA3389318 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202133/ERR1202133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202133/ERR1202133_2.fastq.gz 2426952 WGS GPS_MW_BND1DW-sc-2295793 RANDOM 45911938;48240921 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202133/ERR1202133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202133/ERR1202133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202133/17870_7#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202133/17870_7#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202133/ERR1202133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202133/ERR1202133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202133/17870_7#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202133/17870_7#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70319398;4065 ERS725421 ERX1274375 GENOMIC 14978353 303369000 2016-01-12 SC_RUN_17870_7#63 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202133/17870_7#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202133/17870_7#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#63 ERR1192174 SC_EXP_17794_8#163 441 7d90917188448c41c3a98fbae8bdb51d;2f4ce266f24aa4bb91154509e188de3b 1313 70df7944d71dce454ec3ae289bf6940b;d4e94df3fa2274e308838d463ca7e4f7 SAMEA3389125 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192174/ERR1192174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192174/ERR1192174_2.fastq.gz 2879338 WGS GPS_MW_155462-sc-2295598 RANDOM 54296450;60504374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192174/ERR1192174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192174/ERR1192174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192174/17794_8#163.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192174/17794_8#163.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192174/ERR1192174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192174/ERR1192174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192174/17794_8#163.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192174/17794_8#163.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90225251;4741 ERS725228 ERX1265558 GENOMIC 14941684 359917250 2015-12-17 SC_RUN_17794_8#163 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192174/17794_8#163.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192174/17794_8#163.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#163 ERR1192128 SC_EXP_17794_8#117 441 61ada51ced505d17e249dca97b82967c;3144de9d74a750579aaa9d1487eb24d9 1313 f49b39584910b28360ab68181974d58a;9f40faea6bff11c64b22e7b2d2230b20 SAMEA3381665 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192128/ERR1192128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192128/ERR1192128_2.fastq.gz 2854252 WGS GPS_GM_2176-sc-2279565 RANDOM 53336170;57329129 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192128/ERR1192128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192128/ERR1192128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192128/17794_8#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192128/17794_8#117.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1192128/ERR1192128_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1192128/ERR1192128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192128/17794_8#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192128/17794_8#117.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86348938;4771 ERS719924 ERX1265512 GENOMIC 14941690 356781500 2015-12-17 SC_RUN_17794_8#117 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192128/17794_8#117.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192128/17794_8#117.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#117 ERR1192112 SC_EXP_17794_8#101 441 22b0f6e26d5921daabcfa0037cba1259;20e629a0388b0f1dcd9462332424b9cc 1313 8487d8e04a2e8146d889241a129e9c25;e6e26c2e1ce4ea7545bafd8a0b3c8f8a SAMEA3381648 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192112/ERR1192112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192112/ERR1192112_2.fastq.gz 3301572 WGS GPS_GM_2159-sc-2279531 RANDOM 60212897;66078829 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192112/ERR1192112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192112/ERR1192112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192112/17794_8#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192112/17794_8#101.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192112/ERR1192112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192112/ERR1192112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192112/17794_8#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192112/17794_8#101.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 98681500;5445 ERS719907 ERX1265496 GENOMIC 14941688 412696500 2015-12-17 SC_RUN_17794_8#101 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192112/17794_8#101.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192112/17794_8#101.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#101 ERR1192063 SC_EXP_17794_8#52 441 2c629ecbc2d2227a654317490132a376;472f1537cbd081cdf903d4f686bff1a5 1313 39973e2b526aa8360a524f3a25dd025f;086e454395f8db8137fde9152a9fcaea SAMEA3381583 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192063/ERR1192063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192063/ERR1192063_2.fastq.gz 2450832 WGS GPS_GM_2094-sc-2279462 RANDOM 48742804;49430156 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192063/ERR1192063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192063/ERR1192063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192063/17794_8#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192063/17794_8#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192063/ERR1192063_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192063/ERR1192063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192063/17794_8#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192063/17794_8#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76053574;4083 ERS719842 ERX1265447 GENOMIC 14941573 306354000 2015-12-17 SC_RUN_17794_8#52 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192063/17794_8#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192063/17794_8#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#52 ERR1192060 SC_EXP_17794_8#49 441 da749e1830421d264f6d5b6bb169a374;e721f56b6412c09a3d57726173131b32 1313 88360f8405f4935c8a7e5c8bf0567b9d;201a0a9a2f541d2c425c5f5c29341b13 SAMEA3381577 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192060/ERR1192060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192060/ERR1192060_2.fastq.gz 2721454 WGS GPS_GM_2088-sc-2279456 RANDOM 52818044;52816784 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192060/ERR1192060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192060/ERR1192060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192060/17794_8#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192060/17794_8#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1192060/ERR1192060_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1192060/ERR1192060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192060/17794_8#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192060/17794_8#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82218209;4558 ERS719836 ERX1265444 GENOMIC 14941537 340181750 2015-12-17 SC_RUN_17794_8#49 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192060/17794_8#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192060/17794_8#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#49 ERR1192059 SC_EXP_17794_8#48 441 a58f7a346d8e0b4f265d31fd7ce50802;a9c7dc47145f72d620c51e326b8e3a09 1313 4e46f812111171b3f389f37e206ec734;9f4a21016293bbb427c3c1a3f1d55300 SAMEA3381576 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192059/ERR1192059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192059/ERR1192059_2.fastq.gz 2193352 WGS GPS_GM_2087-sc-2279454 RANDOM 44576847;44645080 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192059/ERR1192059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192059/ERR1192059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192059/17794_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192059/17794_8#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1192059/ERR1192059_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1192059/ERR1192059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192059/17794_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192059/17794_8#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68026471;3671 ERS719835 ERX1265443 GENOMIC 14941620 274169000 2015-12-17 SC_RUN_17794_8#48 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192059/17794_8#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192059/17794_8#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#48 ERR1192020 SC_EXP_17794_8#9 441 aacb530b779033d365f2c5e3cad3d95b;a406b38013078d988a77334783073283 1313 615743953ad4f8ad656a2406c3f2a7dc;d26fede790f5aacc76de347041dea423 SAMEA3381479 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192020/ERR1192020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192020/ERR1192020_2.fastq.gz 2447754 WGS GPS_GM_2038-sc-2279357 RANDOM 47383033;48785974 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192020/ERR1192020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192020/ERR1192020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192020/17794_8#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192020/17794_8#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1192020/ERR1192020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1192020/ERR1192020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192020/17794_8#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192020/17794_8#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73748113;4127 ERS719738 ERX1265404 GENOMIC 14941532 305969250 2015-12-17 SC_RUN_17794_8#9 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192020/17794_8#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192020/17794_8#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#9 ERR1191921 SC_EXP_17794_7#99 458 3164b25e46a49066d5c9ef82adb5d4e2;bc63d75ce89540eb1cb0420253162f96 1313 2f504306140bc955eaec556d35202899;ca8f7fdb075850164d96d723e7071bce SAMEA3381416 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191921/ERR1191921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191921/ERR1191921_2.fastq.gz 2385838 WGS GPS_GM_1928-sc-2279293 RANDOM 46387133;48887176 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191921/ERR1191921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191921/ERR1191921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191921/17794_7#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191921/17794_7#99.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191921/ERR1191921_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191921/ERR1191921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191921/17794_7#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191921/17794_7#99.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73420384;4025 ERS719675 ERX1265305 GENOMIC 14934864 298229750 2015-12-17 SC_RUN_17794_7#99 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191921/17794_7#99.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191921/17794_7#99.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#99 ERR714448 SC_EXP_14410_8#6 224 449451d1e71bdb72cb7666d01cab2266;ad31fc7dd70d114c59e7e675c86e2209 1313 0497d97715b5e873ec759de87ad726ef;6946f85f2e7b258d8f18290275ca1cae SAMEA2658320 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714448/ERR714448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714448/ERR714448_2.fastq.gz 4824398 WGS GPS_ZA_1478-sc-2020925 RANDOM 168224455;169040957 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714448/ERR714448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714448/ERR714448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714448/14410_8#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714448/14410_8#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714448/ERR714448_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714448/ERR714448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714448/14410_8#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714448/14410_8#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276197415;7995 ERS508348 ERX658370 GENOMIC 11883112 482439800 2015-01-08 SC_RUN_14410_8#6 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714448/14410_8#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714448/14410_8#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_8#6 ERR730306 SC_EXP_14520_5#73 224 c551589486866912445fba0f6a3f5335;0129235b5e0782bf08827e15f70dbb83 1313 f97fdf28b2bfd746a5d5270e998f2b27;b818fad436a0838c3fb7e889fd8eea0f SAMEA2696496 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730306/ERR730306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730306/ERR730306_2.fastq.gz 4735122 WGS GPS_GM_0686-sc-2021951 RANDOM 175162839;178318993 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730306/ERR730306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730306/ERR730306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730306/14520_5#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730306/14520_5#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730306/ERR730306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730306/ERR730306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730306/14520_5#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730306/14520_5#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 290238509;7709 ERS525075 ERX674252 GENOMIC 11982849 473512200 2015-01-14 SC_RUN_14520_5#73 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730306/14520_5#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730306/14520_5#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#73 ERR600375 SC_EXP_13415_4#65 250 eafe4f4250ba689b0dca9cefe58e8fe5;3fe093b9c88c443ef2a28fdcbefa514d 1313 05e8bbd993e10b91cb0f00b57ce67ffc;7ee87c2cf148834bb3dab2c3992732e0 SAMEA2553841 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600375/ERR600375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600375/ERR600375_2.fastq.gz 3863264 WGS GPS_ZA_777-sc-1950922 RANDOM 125755314;130804824 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600375/ERR600375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600375/ERR600375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600375/13415_4#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600375/13415_4#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600375/ERR600375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600375/ERR600375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600375/13415_4#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600375/13415_4#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 210968143;6211 ERS464342 ERX557204 GENOMIC 10631186 386326400 2014-09-16 SC_RUN_13415_4#65 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600375/13415_4#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600375/13415_4#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#65 ERR632935 SC_EXP_13414_8#68 241 b882677a6ab25170d087ad773a3d6f7f;2180e5b005c905d76bf58df23dd3ce65 1313 67bdf3ffbbef787ee1c9c30707dbdb5b;4995274667e7c6e4d80bf34dc69e75fa SAMEA2553749 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632935/ERR632935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632935/ERR632935_2.fastq.gz 4251660 WGS GPS_ZA_685-sc-1950829 RANDOM 140529007;144977146 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632935/ERR632935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632935/ERR632935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632935/13414_8#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632935/13414_8#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632935/ERR632935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632935/ERR632935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632935/13414_8#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632935/13414_8#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234505403;6911 ERS464250 ERX589489 GENOMIC 10631125 425166000 2014-09-23 SC_RUN_13414_8#68 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632935/13414_8#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632935/13414_8#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#68 ERR600452 SC_EXP_13415_5#48 246 a63eb83d9e7e1b61049dd9b6ac5b3e08;070ee7a2ba091bbd4c9ad0f8f6bcc37c 1313 4240818a5fd8a823a74b26b68b8668a7;3728a75b4c36453aebbbd4016c495066 SAMEA2553920 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600452/ERR600452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600452/ERR600452_2.fastq.gz 4445222 WGS GPS_ZA_856-sc-1951002 RANDOM 147255659;153567699 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600452/ERR600452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600452/ERR600452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600452/13415_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600452/13415_5#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600452/ERR600452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600452/ERR600452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600452/13415_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600452/13415_5#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247355420;7246 ERS464421 ERX557281 GENOMIC 10646279 444522200 2014-09-16 SC_RUN_13415_5#48 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600452/13415_5#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600452/13415_5#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#48 ERR559375 SC_EXP_12718_5#14 231 54429f0cc7057b22c58b73ad982c2d6f;6214e0f2957ae81c731d30f9245d630a 1313 8db2de4335378e13944f9b55745994e1;243aefc48ff8bff89b57ef62fecfedfa SAMEA2382844 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559375/ERR559375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559375/ERR559375_2.fastq.gz 5151584 WGS 2061651_II-sc-1870092 RANDOM 160366137;167473568 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559375/ERR559375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559375/ERR559375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559375/12718_5#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559375/12718_5#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559375/ERR559375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559375/ERR559375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559375/12718_5#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559375/12718_5#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 268154432;8423 ERS409169 ERX518411 GENOMIC 9918426 515158400 2014-07-10 SC_RUN_12718_5#14 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559375/12718_5#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559375/12718_5#14.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#14 ERR600601 SC_EXP_13415_7#12 225 46ad269d767c18ebfd3539f13d8100ea;7b09c66b05daa8f538a95caad29e9c6e 1313 665b5f4fa6938eb52deabea04a93b031;dc8a91628a1ee7ac9526f703c30b4e52 SAMEA2554123 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600601/ERR600601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600601/ERR600601_2.fastq.gz 5000798 WGS GPS_ZA_1012-sc-1951160 RANDOM 167526904;173428054 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600601/ERR600601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600601/ERR600601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600601/13415_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600601/13415_7#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600601/ERR600601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600601/ERR600601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600601/13415_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600601/13415_7#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281394144;8212 ERS464624 ERX557430 GENOMIC 10646324 500079800 2014-09-16 SC_RUN_13415_7#12 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600601/13415_7#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600601/13415_7#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_7#12 ERR554956 SC_EXP_12673_7#30 217 d44059d1295670b43df30990d9e6cf49;6b264fe35f33324cf6f2aeec390077c1 1313 cf854d436563617d613d2db36e614779;c42e8a0b21e2c2a56586dbc20e78a881 SAMEA2382670 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554956/ERR554956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554956/ERR554956_2.fastq.gz 5713816 WGS 992005_II-sc-1869916 RANDOM 193073035;216168775 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554956/ERR554956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554956/ERR554956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554956/12673_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554956/12673_7#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554956/ERR554956_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554956/ERR554956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554956/12673_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554956/12673_7#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 342962157;9455 ERS408995 ERX514025 GENOMIC 9799057 571381600 2014-07-02 SC_RUN_12673_7#30 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554956/12673_7#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554956/12673_7#30.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#30 ERR461399 SC_EXP_11861_1#22 225 d4538a2d8ae9fe3b4110dea09a0e9055;05cac73a86a3cf446827e7aa7091a390 1313 5b70c13b51c492d8504383c63b9c3970;9beacda9026bcbb34d0be03ff73d4891 SAMEA2238585 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461399/ERR461399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461399/ERR461399_2.fastq.gz 3886476 WGS 2082239-sc-2013-11-05T11:58:59Z-1749946 RANDOM 123218555;129508208 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461399/ERR461399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461399/ERR461399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461399/11861_1#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461399/11861_1#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461399/ERR461399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461399/ERR461399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461399/11861_1#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461399/11861_1#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 206315334;6403 ERS367397 ERX427740 GENOMIC 9016170 388647600 2014-03-18 SC_RUN_11861_1#22 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461399/11861_1#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461399/11861_1#22.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#22 ERR461773 SC_EXP_11861_5#35 221 b40c02e0e55094ff13197711ff8ea927;8cb7339c9ef21d6d0702ce7479735491 1313 10f5502bb5e57cf833ff4cf414a5732a;a2e1e21dc1e45a045fe74bdf02ff14d4 SAMEA2239261 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461773/ERR461773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461773/ERR461773_2.fastq.gz 4349688 WGS 2012019-sc-2013-11-05T12:10:43Z-1750633 RANDOM 132156865;138828353 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461773/ERR461773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461773/ERR461773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461773/11861_5#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461773/11861_5#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461773/ERR461773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461773/ERR461773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461773/11861_5#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461773/11861_5#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 221556693;7198 ERS368073 ERX428114 GENOMIC 9017843 434968800 2014-03-18 SC_RUN_11861_5#35 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461773/11861_5#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461773/11861_5#35.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#35 ERR490714 SC_EXP_12162_1#10 223 1f23f667c2df0c4fe5eebec90fc4aad5;88fbf00caf91e134e3d0fba41823f05e 1313 ab7b37a94b92a2d60f3812b3676ad714;93c2cdc106d3d2123bc0572bfb2cd064 SAMEA2298287 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490714/ERR490714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490714/ERR490714_2.fastq.gz 4296714 WGS SA_GPS_SP221-sc-1810498 RANDOM 130168529;138878658 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490714/ERR490714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490714/ERR490714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490714/12162_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490714/12162_1#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490714/ERR490714_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490714/ERR490714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490714/12162_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490714/12162_1#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 219558275;7068 ERS390745 ERX456168 GENOMIC 9340455 429671400 2014-04-28 SC_RUN_12162_1#10 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490714/12162_1#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490714/12162_1#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12162_1#10 ERR352000 SC_EXP_10395_5#10 269 312bc83ad8298c3c52e08d4a98c10935;e8903307a49a6c619b559e87140e5e7f 1313 7aeafd20173ebadac1441df4a8822d44;c21e51dfa0216566f25a078d5a04ed07 SAMEA2066643 2013-10-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352000/ERR352000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352000/ERR352000_2.fastq.gz 4383178 WGS PI0103-sc-2013-05-02T11:26:11Z-1620037 RANDOM 152659067;161310694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352000/ERR352000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352000/ERR352000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352000/10395_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352000/10395_5#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352000/ERR352000_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352000/ERR352000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352000/10395_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352000/10395_5#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255128539;6984 ERS242894 ERX324783 GENOMIC 7705304 438317800 2013-10-14 SC_RUN_10395_5#10 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352000/10395_5#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352000/10395_5#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA257935 10395_5#10 ERR273528 SC_EXP_6731_2#1 215 5ce6022f5eaae0ac862a5ab15f54ef8e 1313 0b9d4c0d175923399b284ce5d2a8911c;c3953c0d910a1f1e8b7a49d8994d0830 SAMEA1024934 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273528/ERR273528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273528/ERR273528_2.fastq.gz 1101072 WGS SMRU1009-sc-2011-01-27-1061222 RANDOM 51917493;52013607 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273528/ERR273528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273528/ERR273528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273528/6731_2#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273528/ERR273528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273528/ERR273528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273528/6731_2#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 150063380 ERS020519 ERX247804 GENOMIC 3246184 165160800 2013-05-13 SC_RUN_6731_2#1 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273528/6731_2#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR063918 SC_EXP_6925_3#13 239 78bc61ed2c28d3adfb00ab7e62be59b8 1313 02c8e27bd1702f781652e294a9882834;30546944c48f8406433acaaa002d6da4 SAMEA1025750 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063918/ERR063918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063918/ERR063918_2.fastq.gz 4066627 WGS SMRU2125-sc-2011-01-27-1062338 RANDOM 249799520;246030970 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063918/ERR063918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063918/ERR063918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063918/6925_3#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063918/ERR063918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063918/ERR063918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063918/6925_3#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 636714043 ERS021635 ERX041891 GENOMIC 3610919 609994050 2012-01-05 SC_RUN_6925_3#13 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063918/6925_3#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR047926 SC_EXP_6593_5#9 235 09aa32936ca913896a5f36fa89907cb8 1313 6503a323ff75d003d6d962c205e31077;2d05d32a47a07dfd192440d5981d4418 SAMEA1023874 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047926/ERR047926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047926/ERR047926_2.fastq.gz 13203347 WGS SMRU129-sc-2011-01-27-1060318 RANDOM 872545722;932988605 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047926/ERR047926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047926/ERR047926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047926/6593_5#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047926/ERR047926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047926/ERR047926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047926/6593_5#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 2223840969 ERS019287 ERX024989 GENOMIC 2882533 1980502050 2011-10-11 SC_RUN_6593_5#9 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047926/6593_5#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048192 SC_EXP_6631_7#11 213 797263ad7bd6d1e4521aa066e56b06d2 1313 4addde9c00d4da07a8cf225ee261a467;a606bd8e4f3412a588a59b65567ca6a9 SAMEA1023884 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048192/ERR048192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048192/ERR048192_2.fastq.gz 4111573 WGS SMRU515-sc-2011-01-27-1060704 RANDOM 229984975;225536572 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048192/ERR048192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048192/ERR048192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048192/6631_7#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048192/ERR048192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048192/ERR048192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048192/6631_7#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 576165162 ERS019673 ERX025255 GENOMIC 3037834 616735950 2011-10-11 SC_RUN_6631_7#11 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048192/6631_7#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR433739 SC_EXP_11657_8#48 250 d10c72512163c720d8cd58952f0caba5;4c4e3a594824f126df269e8c55a4b244 1313 6a78f1fccc271085e6449f54d808b8f3;9de679c023882a431cf81d7b35ee4d80 SAMEA2204186 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433739/ERR433739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433739/ERR433739_2.fastq.gz 5421990 WGS PATH3384-sc-2013-10-09T11:56:55Z-1712779 RANDOM 188970981;193275588 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433739/ERR433739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433739/ERR433739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433739/11657_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433739/11657_8#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433739/ERR433739_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433739/ERR433739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433739/11657_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433739/11657_8#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313902031;8962 ERS356697 ERX400014 GENOMIC 8657173 542199000 2014-02-18 SC_RUN_11657_8#48 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433739/11657_8#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433739/11657_8#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_8#48 ERR048179 SC_EXP_6631_6#22 211 69208a1821f9041ccc8e7ca4cca87fb8 1313 24ded01f9baf58a0a5ab139a7abf858b;eef25547cfa18e9e7f171d5261eb26c6 SAMEA1024110 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048179/ERR048179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048179/ERR048179_2.fastq.gz 7861649 WGS SMRU502-sc-2011-01-27-1060691 RANDOM 513585454;530707637 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048179/ERR048179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048179/ERR048179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048179/6631_6#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048179/ERR048179_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048179/ERR048179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048179/6631_6#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1289256573 ERS019660 ERX025242 GENOMIC 3037821 1179247350 2011-10-11 SC_RUN_6631_6#22 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048179/6631_6#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048129 SC_EXP_6631_4#20 234 635765f9ba2bb770b6d64ac8c7114daf 1313 b4b313c81d4252a1821544c196cb0cdd;80c430b3891405314211a2a93e6e4bf0 SAMEA1024018 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048129/ERR048129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048129/ERR048129_2.fastq.gz 3098251 WGS SMRU452-sc-2011-01-27-1060641 RANDOM 173325672;163856491 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048129/ERR048129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048129/ERR048129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048129/6631_4#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048129/ERR048129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048129/ERR048129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048129/6631_4#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 433797719 ERS019610 ERX025192 GENOMIC 2952239 464737650 2011-10-11 SC_RUN_6631_4#20 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048129/6631_4#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048159 SC_EXP_6631_6#2 211 4f62f9c2b5f475160f98dc1569cfadba 1313 6872ea03572814b426b38d4dfe2e0c86;5a842000c69ce7695748b87707565567 SAMEA1024080 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048159/ERR048159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048159/ERR048159_2.fastq.gz 7988884 WGS SMRU482-sc-2011-01-27-1060671 RANDOM 511831861;526493723 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048159/ERR048159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048159/ERR048159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048159/6631_6#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048159/ERR048159_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048159/ERR048159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048159/6631_6#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1304337777 ERS019640 ERX025222 GENOMIC 3037801 1198332600 2011-10-11 SC_RUN_6631_6#2 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048159/6631_6#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR066326 SC_EXP_6983_7#55 239 cacc0344784c332a26d433333a61291a 1313 601d9da47540c3aa5deb88a1b6ea2789;850e60f130348939c15d6f8d4d744a86 SAMEA1028724 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066326/ERR066326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066326/ERR066326_2.fastq.gz 4040461 WGS SMRU2359-sc-2011-01-27-1062572 RANDOM 288741645;297126436 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066326/ERR066326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066326/ERR066326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066326/6983_7#55.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066326/ERR066326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066326/ERR066326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066326/6983_7#55.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 712274261 ERS021868 ERX044189 GENOMIC 3596137 606069150 2012-03-19 SC_RUN_6983_7#55 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066326/6983_7#55.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066202 SC_EXP_6983_2#3 239 ee0e856262697aa98ad2a97d6582b785 1313 4ff779eba98ab81d0f9755f40e0b6bcd;97c9fcb3198ede407cac40aedc40dc16 SAMEA1025736 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066202/ERR066202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066202/ERR066202_2.fastq.gz 2877061 WGS SMRU2211-sc-2011-01-27-1062424 RANDOM 202163775;201578983 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066202/ERR066202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066202/ERR066202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066202/6983_2#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066202/ERR066202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066202/ERR066202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066202/6983_2#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 505395800 ERS021720 ERX044065 GENOMIC 3593275 431559150 2012-01-10 SC_RUN_6983_2#3 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066202/6983_2#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR056892 SC_EXP_6805_7#18 233 e5cbec6090622d7cfea80a3f52326468 1313 0bef693f1cfeaa9655e80dbf739f567e;4b330cec4feca709b9f26b528fc742f9 SAMEA1025710 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056892/ERR056892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056892/ERR056892_2.fastq.gz 4947336 WGS SMRU1747-sc-2011-01-27-1061960 RANDOM 234073532;243705028 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056892/ERR056892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056892/ERR056892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056892/6805_7#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056892/ERR056892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056892/ERR056892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056892/6805_7#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 603615319 ERS021257 ERX034736 GENOMIC 3481250 742100400 2012-03-22 SC_RUN_6805_7#18 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056892/6805_7#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056731 SC_EXP_6805_1#1 215 7abed97924c137465775990483fc045a 1313 556bed067feb454724f8d8d5fcbd53ad;6ac05018b83632fa3f21316852bb339a SAMEA1024934 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056731/ERR056731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056731/ERR056731_2.fastq.gz 3077255 WGS SMRU1009-sc-2011-01-27-1061222 RANDOM 157693540;163517643 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056731/ERR056731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056731/ERR056731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056731/6805_1#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056731/ERR056731_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056731/ERR056731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056731/6805_1#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 407018256 ERS020519 ERX034575 GENOMIC 3246184 461588250 2011-11-29 SC_RUN_6805_1#1 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056731/6805_1#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR049955 SC_EXP_6664_1#20 221 8f165a7d287df5503fda53463ed15cbe 1313 6dc04257e94f394202de65d74ddf4b23;dfe688ebd469c238e75989b120f66626 SAMEA1023767 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049955/ERR049955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049955/ERR049955_2.fastq.gz 6061486 WGS SMRU236-sc-2011-01-27-1060425 RANDOM 339687684;352904786 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049955/ERR049955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049955/ERR049955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049955/6664_1#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049955/ERR049955_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049955/ERR049955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049955/6664_1#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 868201084 ERS019394 ERX027015 GENOMIC 2950574 909222900 2011-10-25 SC_RUN_6664_1#20 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049955/6664_1#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 ERR049936 SC_EXP_6664_1#1 221 6aa880d6c17e1b3591ebbe913970a644 1313 c217851693ce8c869dda1af92da9c631;17aee6c96eb25c48da8931dcdc487a36 SAMEA1023911 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049936/ERR049936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049936/ERR049936_2.fastq.gz 5821548 WGS SMRU217-sc-2011-01-27-1060406 RANDOM 341206450;353945997 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049936/ERR049936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049936/ERR049936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049936/6664_1#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049936/ERR049936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049936/ERR049936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049936/6664_1#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 854233982 ERS019375 ERX026996 GENOMIC 2950555 873232200 2011-10-25 SC_RUN_6664_1#1 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049936/6664_1#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 ERR060007 SC_EXP_6840_3#3 234 b8fbfdcdc0906e9194dadc1877b5946e 1313 5c756c6ec083af3e38694bb8c4a90415;c0c7f5de453e63db5ca52befdb7750d2 SAMEA1025803 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060007/ERR060007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060007/ERR060007_2.fastq.gz 7609914 WGS SMRU1803-sc-2011-01-27-1062016 RANDOM 507030369;509270556 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060007/ERR060007_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060007/ERR060007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060007/6840_3#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060007/ERR060007_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060007/ERR060007_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060007/6840_3#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1274157180 ERS021313 ERX037845 GENOMIC 3481335 1141487100 2012-03-22 SC_RUN_6840_3#3 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060007/6840_3#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR046182 SC_EXP_6512_6#17 236 905d898f33880a7cb50cdc3056f27518 1313 8882b5914cb4fd999dcd30ca846a437a;504150a0d0a4e2b79b0348181807e03f SAMEA1026607 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046182/ERR046182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046182/ERR046182_2.fastq.gz 6591773 WGS UoS4155-sc-2011-02-14-1078411 RANDOM 355538175;344250290 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046182/ERR046182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046182/ERR046182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046182/6512_6#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046182/ERR046182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046182/ERR046182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046182/6512_6#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 883937687 ERS023357 ERX023244 GENOMIC 2735094 988765950 2011-09-20 SC_RUN_6512_6#17 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046182/6512_6#17.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_6#17 ERR046123 SC_EXP_6512_4#4 241 99f023fd8597a6a741aad83696b9e29c 1313 ea15e04fe87ef12d93279e4fa7ce91be;ba6570af1cc13e371292b07d440018da SAMEA1026753 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046123/ERR046123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046123/ERR046123_2.fastq.gz 7940674 WGS UoS3259-sc-2011-02-14-1078352 RANDOM 416831572;410214744 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046123/ERR046123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046123/ERR046123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046123/6512_4#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046123/ERR046123_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046123/ERR046123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046123/6512_4#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1024918666 ERS023298 ERX023185 GENOMIC 2734970 1191101100 2011-09-20 SC_RUN_6512_4#4 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046123/6512_4#4.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_4#4 ERR045418 SC_EXP_6486_8#3 229 8524ea0f362a5edb80b3f81ac66b0c0a 1313 b1c9e3d8e94d5dc031fa8f6c6f71945e;bbf2ca53201f906a421530af76a34bb7 SAMEA1026443 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045418/ERR045418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045418/ERR045418_2.fastq.gz 8532032 WGS UoS5121-sc-2011-03-11-1098962 RANDOM 448569179;452301998 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045418/ERR045418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045418/ERR045418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045418/6486_8#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045418/ERR045418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045418/ERR045418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045418/6486_8#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1134117221 ERS025152 ERX022480 GENOMIC 2745022 1279804800 2011-09-14 SC_RUN_6486_8#3 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045418/6486_8#3.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_8#3 ERR326747 SC_EXP_9953_7#58 227 90ce45302e463da0576b57626128813b 1313 a31245a0d7aaa606e30c2d52eb568058;640060f3adca77f7b87df611c5789cc3 SAMEA2059731 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326747/ERR326747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326747/ERR326747_2.fastq.gz 2492604 WGS PBCN0235-sc-2013-03-27T13:18:38Z-1603593 RANDOM 172457125;171914760 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326747/ERR326747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326747/ERR326747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326747/9953_7#58.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326747/ERR326747_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326747/ERR326747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326747/9953_7#58.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 467721913 ERS225728 ERX299847 GENOMIC 7376811 498520800 2013-08-14 SC_RUN_9953_7#58 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326747/9953_7#58.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#58 ERR316919 SC_EXP_9789_5#75 239 ce9105f569fd78d3a871da73875e5873 1313 ab83e9a89a378c006665f33ba800efa3;dfe2e346fce494dffe89f0bcbd16c2c0 SAMEA2052482 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316919/ERR316919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316919/ERR316919_2.fastq.gz 1765589 WGS 1400-sc-2013-02-18T14:48:03Z-1562061 RANDOM 110876865;119642897 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316919/ERR316919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316919/ERR316919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316919/9789_5#75.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316919/ERR316919_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316919/ERR316919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316919/9789_5#75.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 319408465 ERS215275 ERX290067 GENOMIC 7125952 353117800 2013-07-22 SC_RUN_9789_5#75 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316919/9789_5#75.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#75 ERR1788160 SC_EXP_21053_8#149 419 664a39de4894e449af811607180deb3e;708671f5778097bd6ed02c263081c35c 1313 aeff4f90567ba942bdd5fb10a6491833;4ba90c1649d1e1c261dfa2d78b1e4617 SAMEA4387912 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788160/ERR1788160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788160/ERR1788160_2.fastq.gz 2693408 WGS 5aa9e400-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 52255144;55705798 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788160/ERR1788160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788160/ERR1788160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788160/21053_8#149.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788160/21053_8#149.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/000/ERR1788160/ERR1788160_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/000/ERR1788160/ERR1788160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788160/21053_8#149.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788160/21053_8#149.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76780091;4464 ERS1299361 ERX1851883 GENOMIC DN465033T:F7 336676000 2017-01-11 SC_RUN_21053_8#149 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788160/21053_8#149.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788160/21053_8#149.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#149 ERR1756390 SC_EXP_20925_3#5 414 883d57230d1cc362ed28bb7521bce051;705079095e774af1ededd62032a4e7ce 1313 33837e0a90fed2e8642393c9e93a0070;88a6b49991e9dcf55ce03bb26e3aabc9 SAMEA4034862 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756390/ERR1756390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756390/ERR1756390_2.fastq.gz 5510614 WGS 39a87140-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 101354595;111831603 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756390/ERR1756390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756390/ERR1756390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756390/20925_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756390/20925_3#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/000/ERR1756390/ERR1756390_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/000/ERR1756390/ERR1756390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756390/20925_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756390/20925_3#5.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164597487;9155 ERS1205972 ERX1823410 GENOMIC DN461288B:E1 688826750 2016-12-13 SC_RUN_20925_3#5 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756390/20925_3#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756390/20925_3#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#5 ERR1638466 SC_EXP_20287_5#132 410 2d5dc2984c8a21630ea5bad2597a1e65;439a949c2b7e335ddc763774e1f87d99 1313 74eb599ddbe765faf3d689fbed7c527f;1a02444ddf4241060c201e5a516aad43 SAMEA3389252 2016-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR163/006/ERR1638466/ERR1638466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR163/006/ERR1638466/ERR1638466_2.fastq.gz 4507824 WGS GPS_MW_C2307-sc-2295725 RANDOM 91861125;100897276 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR163/006/ERR1638466/ERR1638466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR163/006/ERR1638466/ERR1638466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR163/ERR1638466/20287_5#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR163/ERR1638466/20287_5#132.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR163/006/ERR1638466/ERR1638466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR163/006/ERR1638466/ERR1638466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR163/ERR1638466/20287_5#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR163/ERR1638466/20287_5#132.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 139126757;7403 ERS725355 ERX1708787 GENOMIC 16772831 563478000 2016-09-20 SC_RUN_20287_5#132 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR163/ERR1638466/20287_5#132.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR163/ERR1638466/20287_5#132.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA707426 20287_5#132 ERR1430857 SC_EXP_19183_3#59 469 2f801bfb81d884b342cb27e9c6fa8504;2909c5bbcca34d6f2eea27f6e8866e2f 1313 0e7295c7788bf5c7b61a41ab0fcabf6a;9071546323f9c88ede6c56d55300f29c SAMEA3447985 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1430857/ERR1430857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1430857/ERR1430857_2.fastq.gz 1861796 WGS GPS_GM_2247-sc-2296871 RANDOM 38028575;36345510 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1430857/ERR1430857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1430857/ERR1430857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430857/19183_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430857/19183_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1430857/ERR1430857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1430857/ERR1430857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430857/19183_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430857/19183_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 52429878;3219 ERS745559 ERX1501235 GENOMIC 15923118 232724500 2016-06-01 SC_RUN_19183_3#59 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430857/19183_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430857/19183_3#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#59 ERR1202438 SC_EXP_17870_8#178 447 09f0df47dadf836046319a3e50383625;7c9fa85fb2d03f5cb071cb161c5285cd 1313 f51d817edf0052a2ac40ca1f472eb69f;0e41cd425428be2e20cd6eb4d61d8719 SAMEA3389981 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202438/ERR1202438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202438/ERR1202438_2.fastq.gz 2780762 WGS GPS_MW_BQN1R6-sc-2296227 RANDOM 52938450;56536467 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202438/ERR1202438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202438/ERR1202438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202438/17870_8#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202438/17870_8#178.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202438/ERR1202438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202438/ERR1202438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202438/17870_8#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202438/17870_8#178.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82307027;4549 ERS726084 ERX1274680 GENOMIC 14977609 347595250 2016-01-12 SC_RUN_17870_8#178 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202438/17870_8#178.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202438/17870_8#178.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#178 ERR1191926 SC_EXP_17794_7#104 458 c238f70b218ec70a0f3e074190df2b74;e849d43c1d184a06d981e4ccb9949a7f 1313 43c44a5f378ba377d0faa3ce3895f612;e9ea333fb210ff64cfebd21e04d66340 SAMEA3381421 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191926/ERR1191926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191926/ERR1191926_2.fastq.gz 2234828 WGS GPS_GM_1933-sc-2279299 RANDOM 43489333;47308751 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191926/ERR1191926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191926/ERR1191926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191926/17794_7#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191926/17794_7#104.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1191926/ERR1191926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1191926/ERR1191926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191926/17794_7#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191926/17794_7#104.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70373357;3814 ERS719680 ERX1265310 GENOMIC 14934829 279353500 2015-12-17 SC_RUN_17794_7#104 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191926/17794_7#104.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191926/17794_7#104.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#104 ERR1191837 SC_EXP_17794_7#15 458 f5d6ad9c918c56af1080fef100ed0425;aacc392d9b108129b2e42a38bf47dbc0 1313 897c7f47aa56a40cf3819c12ba2762cb;2cf4bb2eafa34241e7a682bc5ff559a1 SAMEA3381489 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191837/ERR1191837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191837/ERR1191837_2.fastq.gz 1089044 WGS GPS_GM_2043-sc-2279367 RANDOM 23004025;22968306 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191837/ERR1191837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191837/ERR1191837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191837/17794_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191837/17794_7#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191837/ERR1191837_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191837/ERR1191837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191837/17794_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191837/17794_7#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 33720676;1884 ERS719748 ERX1265221 GENOMIC 14934804 136130500 2015-12-17 SC_RUN_17794_7#15 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191837/17794_7#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191837/17794_7#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#15 ERR1106805 SC_EXP_17428_8#182 478 f239046b91f1aaa186e9c896d469955a;ada65a803aeff8e88caf7be1f9984e7a 1313 8d83a8ea0b74f72f42a043bd46579735;2f87ea199513859e788299195f460b48 SAMEA3381396 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/005/ERR1106805/ERR1106805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/005/ERR1106805/ERR1106805_2.fastq.gz 2403186 WGS GPS_GM_1908-sc-2279273 RANDOM 42763599;45637407 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/005/ERR1106805/ERR1106805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/005/ERR1106805/ERR1106805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106805/17428_8#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106805/17428_8#182.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/005/ERR1106805/ERR1106805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/005/ERR1106805/ERR1106805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106805/17428_8#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106805/17428_8#182.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68564494;4067 ERS719655 ERX1186336 GENOMIC 14702599 300398250 2015-11-03 SC_RUN_17428_8#182 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106805/17428_8#182.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106805/17428_8#182.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#182 ERR1106792 SC_EXP_17428_8#169 478 d1545ac126fe40e5f9fe9e6472bd6dd6;b4d07ec82ceb13e0e1548141ec62e5fa 1313 8e83465fc065d774211320a17dd25b16;05d86a9d2921194e54021d98e4de0952 SAMEA3381383 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106792/ERR1106792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106792/ERR1106792_2.fastq.gz 2354954 WGS GPS_GM_1895-sc-2279253 RANDOM 41161497;44174308 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106792/ERR1106792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106792/ERR1106792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106792/17428_8#169.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106792/17428_8#169.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/002/ERR1106792/ERR1106792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/002/ERR1106792/ERR1106792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106792/17428_8#169.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106792/17428_8#169.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68225215;4054 ERS719642 ERX1186323 GENOMIC 14702538 294369250 2015-11-03 SC_RUN_17428_8#169 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106792/17428_8#169.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106792/17428_8#169.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#169 ERR1106777 SC_EXP_17428_8#154 478 3f4fbd22528558253f5343a50e8a97d4;a05c05586f56e8d660d84f053d8d5ea6 1313 1a6ad5b13a95b9c3b73c3ad648ab6634;6bc5e9a8697b0cbd5de1ca11a1941ef7 SAMEA3381368 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106777/ERR1106777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106777/ERR1106777_2.fastq.gz 2234822 WGS GPS_GM_1880-sc-2279224 RANDOM 40848913;41801031 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106777/ERR1106777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106777/ERR1106777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106777/17428_8#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106777/17428_8#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/007/ERR1106777/ERR1106777_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/007/ERR1106777/ERR1106777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106777/17428_8#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106777/17428_8#154.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63576819;3799 ERS719627 ERX1186308 GENOMIC 14702548 279352750 2015-11-03 SC_RUN_17428_8#154 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106777/17428_8#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106777/17428_8#154.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#154 ERR1066076 SC_EXP_17175_5#64 463 45854bb0e88fdde7d11235273d59d714;d3f826fc9ca7caa7c485921543fe33de 1313 3bc7cb5301d1c0be52be4d6cd44cfe54;d19f58ae4c76d55558b108f8dfc55c1f SAMEA3353666 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066076/ERR1066076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066076/ERR1066076_2.fastq.gz 4665472 WGS GPS_ZA_carriage_SP1676-sc-2278268 RANDOM 87123206;90002821 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066076/ERR1066076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066076/ERR1066076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066076/17175_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066076/17175_5#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066076/ERR1066076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066076/ERR1066076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066076/17175_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066076/17175_5#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 136518021;7728 ERS708021 ERX1146226 GENOMIC 14423410 583184000 2015-10-13 SC_RUN_17175_5#64 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066076/17175_5#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066076/17175_5#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#64 ERR1065974 SC_EXP_17175_4#55 467 bda7300f980604247059ba6d2e3f6ebf;b1fe285aee58220c1c3bf6de4dcf68f8 1313 e93cce0225f83211978c8b2878797db5;f46ac9a19fa23645f8d176ab26de3ad9 SAMEA3353455 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065974/ERR1065974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065974/ERR1065974_2.fastq.gz 5192114 WGS GPS_ZA_carriage_SP1480-sc-2278055 RANDOM 95303536;96814069 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065974/ERR1065974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065974/ERR1065974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065974/17175_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065974/17175_4#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065974/ERR1065974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065974/ERR1065974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065974/17175_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065974/17175_4#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 149071067;8521 ERS707810 ERX1146124 GENOMIC 14436375 649014250 2015-10-13 SC_RUN_17175_4#55 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065974/17175_4#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065974/17175_4#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#55 ERR1065926 SC_EXP_17175_4#7 467 1392582b1e37689830aa925d7aa0ff0f;d5fd490ba73dc05036bc988fd3a90d0e 1313 ca683635bcb8696514fc273a7247742e;faebd874ca11c36c4bdb487d76e29978 SAMEA3353365 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065926/ERR1065926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065926/ERR1065926_2.fastq.gz 6403034 WGS GPS_ZA_carriage_SP1432-sc-2277965 RANDOM 117463757;120165942 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065926/ERR1065926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065926/ERR1065926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065926/17175_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065926/17175_4#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065926/ERR1065926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065926/ERR1065926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065926/17175_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065926/17175_4#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188108635;10618 ERS707720 ERX1146076 GENOMIC 14436369 800379250 2015-10-13 SC_RUN_17175_4#7 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065926/17175_4#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065926/17175_4#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#7 ERR1065795 SC_EXP_17150_5#62 460 335b9f0fa127c8d93474fc6b8d694ac1;ee0bc2ba4e9d05c7b83a1e971a955fef 1313 318639b232d9ac64f6b81c2adcf40afd;e5ebce4706426dc1fef0860811d0cdb2 SAMEA3353839 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065795/ERR1065795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065795/ERR1065795_2.fastq.gz 5398714 WGS GPS_ZA_carriage_SP1845-sc-2278443 RANDOM 110442438;101125362 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065795/ERR1065795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065795/ERR1065795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065795/17150_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065795/17150_5#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065795/ERR1065795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065795/ERR1065795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065795/17150_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065795/17150_5#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 163299911;8867 ERS708194 ERX1145945 GENOMIC 14423263 674839250 2015-10-13 SC_RUN_17150_5#62 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065795/17150_5#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065795/17150_5#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#62 ERR1065823 SC_EXP_17150_5#90 460 04df591172afb040e88d54e6ea1aaf99;1f4d47256a189e6e3d52b9329c5224a4 1313 cabc61463b9c712932b0d4335d8bc1cd;5a876027ffd6d0fdf68aeaea191da6a8 SAMEA3353893 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065823/ERR1065823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065823/ERR1065823_2.fastq.gz 5189806 WGS GPS_ZA_carriage_SP1864-sc-2278497 RANDOM 110823117;97707778 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065823/ERR1065823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065823/ERR1065823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065823/17150_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065823/17150_5#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065823/ERR1065823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065823/ERR1065823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065823/17150_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065823/17150_5#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 160874047;8593 ERS708248 ERX1145973 GENOMIC 14423219 648725750 2015-10-13 SC_RUN_17150_5#90 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065823/17150_5#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065823/17150_5#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#90 ERR1065701 SC_EXP_17150_4#62 458 74df0f737d1e678f1fb015a2285b9a8a;b1a519a98d6af925a9f60ee0265a0830 1313 05358ff63d437eba4486aa1b0ced1fde;1c50f8993001c0f408f973ce40976beb SAMEA3353653 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065701/ERR1065701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065701/ERR1065701_2.fastq.gz 3545196 WGS GPS_ZA_carriage_SP1578-sc-2278255 RANDOM 73502812;70277334 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065701/ERR1065701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065701/ERR1065701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065701/17150_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065701/17150_4#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065701/ERR1065701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065701/ERR1065701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065701/17150_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065701/17150_4#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 108818756;5853 ERS708008 ERX1145851 GENOMIC 14436461 443149500 2015-10-13 SC_RUN_17150_4#62 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065701/17150_4#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065701/17150_4#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#62 ERR1065684 SC_EXP_17150_4#45 458 a42a472dd4b4f13cc1c6ef0833273e73;cbfb79e8ce19e71bee22dd1ce57d79cb 1313 adf0dfa742fe1dbfc2cc4dcfdb043533;8cc68d44d646b2aac788ccab76517067 SAMEA3353620 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065684/ERR1065684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065684/ERR1065684_2.fastq.gz 5152224 WGS GPS_ZA_carriage_SP1561-sc-2278222 RANDOM 103018454;100852785 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065684/ERR1065684_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065684/ERR1065684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065684/17150_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065684/17150_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065684/ERR1065684_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065684/ERR1065684_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065684/17150_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065684/17150_4#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 157513285;8527 ERS707975 ERX1145834 GENOMIC 14436447 644028000 2015-10-13 SC_RUN_17150_4#45 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065684/17150_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065684/17150_4#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#45 ERR1065664 SC_EXP_17150_4#25 458 19246657052ec29be6216da1ec307dbb;ca02945e18dd1e59c0874c3b5a1e2909 1313 f6a775ed377cc44dba2ad033481fd125;2700ff513b6c30cdeb29381196fa0719 SAMEA3353579 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065664/ERR1065664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065664/ERR1065664_2.fastq.gz 5600590 WGS GPS_ZA_carriage_SP1541-sc-2278181 RANDOM 111434315;107283016 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065664/ERR1065664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065664/ERR1065664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065664/17150_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065664/17150_4#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065664/ERR1065664_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065664/ERR1065664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065664/17150_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065664/17150_4#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 170072237;9251 ERS707934 ERX1145814 GENOMIC 14436397 700073750 2015-10-13 SC_RUN_17150_4#25 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065664/17150_4#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065664/17150_4#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#25 ERR1065568 SC_EXP_17138_4#85 472 353696f0f44539fff7a8a659c5386626;010dc1e31246d25f202e9a3da2e54909 1313 97138b6760d24474ec1d1ab32234e9ba;e1b87c010699ed30350e6c0147a94cab SAMEA3354367 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065568/ERR1065568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065568/ERR1065568_2.fastq.gz 5630286 WGS GPS_ZA_carriage_SP2049-sc-2279057 RANDOM 107913628;111033736 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065568/ERR1065568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065568/ERR1065568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065568/17138_4#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065568/17138_4#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065568/ERR1065568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065568/ERR1065568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065568/17138_4#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065568/17138_4#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 170139661;9314 ERS708722 ERX1145718 GENOMIC 14468611 703785750 2015-10-13 SC_RUN_17138_4#85 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065568/17138_4#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065568/17138_4#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#85 ERR1065636 SC_EXP_17138_5#62 500 898dc800ad1d059af0e3a9ef3c0aa9aa;5e211d0f892cf781b97e31404850a32b 1313 35660fad21c35b1484bc7d874476a255;fb8685a5bd41145622ede8ab69ea8e72 SAMEA3232833 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065636/ERR1065636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065636/ERR1065636_2.fastq.gz 776750 WGS GPS_NP_4080-sc-2205747 RANDOM 17670910;17270463 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065636/ERR1065636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065636/ERR1065636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065636/17138_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065636/17138_5#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065636/ERR1065636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065636/ERR1065636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065636/17138_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065636/17138_5#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 24138888;1359 ERS654044 ERX1145786 GENOMIC 14451894 97093750 2015-10-13 SC_RUN_17138_5#62 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065636/17138_5#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065636/17138_5#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#62 ERR1065252 SC_EXP_17059_7#48 465 800187696dbe3c99fe64d7b89582a944;7ea627ee24451d41c4bab7eb1325f537 1313 250f2a72e4b69af8932c6cbc9647dd0e;94bb80095208f465342d6005f4234128 SAMEA3353256 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065252/ERR1065252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065252/ERR1065252_2.fastq.gz 4865860 WGS GPS_ZA_carriage_SP1282-sc-2277854 RANDOM 90574237;91256279 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065252/ERR1065252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065252/ERR1065252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065252/17059_7#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065252/17059_7#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065252/ERR1065252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065252/ERR1065252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065252/17059_7#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065252/17059_7#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 149672987;8038 ERS707611 ERX1145402 GENOMIC 14406371 608232500 2015-10-13 SC_RUN_17059_7#48 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065252/17059_7#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065252/17059_7#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#48 ERR1065547 SC_EXP_17138_4#64 472 9cb5fb05f9e5c6608bb6769ecc9fcb44;1422b076394fff5b931bb7d638898684 1313 74b8e3ce1f625b678ce6a7c9e3a84ce6;151ec50cd41fc4b6dfd5232d2862a786 SAMEA3354346 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065547/ERR1065547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065547/ERR1065547_2.fastq.gz 4713436 WGS GPS_ZA_carriage_SP2031-sc-2279007 RANDOM 96296246;93216906 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065547/ERR1065547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065547/ERR1065547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065547/17138_4#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065547/17138_4#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065547/ERR1065547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065547/ERR1065547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065547/17138_4#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065547/17138_4#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 146155928;7830 ERS708701 ERX1145697 GENOMIC 14468644 589179500 2015-10-13 SC_RUN_17138_4#64 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065547/17138_4#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065547/17138_4#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#64 ERR1065289 SC_EXP_17059_7#87 465 202ddfd868f8848d7bef20b1487b1e97;0558001e8a7dbe8c3381e0f613bf399e 1313 d5b2961c1af51aff1724acd344ded549;cc0a114697ca44d22e86217814103751 SAMEA3353337 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065289/ERR1065289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065289/ERR1065289_2.fastq.gz 5781374 WGS GPS_ZA_carriage_SP1321-sc-2277935 RANDOM 108051753;112555034 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065289/ERR1065289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065289/ERR1065289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065289/17059_7#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065289/17059_7#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065289/ERR1065289_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065289/ERR1065289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065289/17059_7#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065289/17059_7#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 183558704;9442 ERS707692 ERX1145439 GENOMIC 14406364 722671750 2015-10-13 SC_RUN_17059_7#87 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065289/17059_7#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065289/17059_7#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#87 ERR1065273 SC_EXP_17059_7#69 465 2310bd485fc06f7bfbfaa946bb72b255;45cff1737a105ea991265b59ecb4ae1d 1313 b948cf661a8706663e67285a7a44aa69;384c08e901b4e3202c528e6f3593ab68 SAMEA3353301 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065273/ERR1065273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065273/ERR1065273_2.fastq.gz 4378738 WGS GPS_ZA_carriage_SP1303-sc-2277899 RANDOM 80663599;86320237 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065273/ERR1065273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065273/ERR1065273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065273/17059_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065273/17059_7#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065273/ERR1065273_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065273/ERR1065273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065273/17059_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065273/17059_7#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 137649101;7256 ERS707656 ERX1145423 GENOMIC 14406338 547342250 2015-10-13 SC_RUN_17059_7#69 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065273/17059_7#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065273/17059_7#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#69 ERR1065315 SC_EXP_17059_8#19 447 d1463e0197856659e79ed2291b3ffc19;f2ab732112d68e5c4f11f5fbbc412b55 1313 192d9667987b25107438edb71251df48;86de6932567ec23cc252364ec1f56939 SAMEA3353385 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065315/ERR1065315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065315/ERR1065315_2.fastq.gz 4766780 WGS GPS_ZA_carriage_SP1347-sc-2277985 RANDOM 84893543;87097474 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065315/ERR1065315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065315/ERR1065315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065315/17059_8#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065315/17059_8#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065315/ERR1065315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065315/ERR1065315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065315/17059_8#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065315/17059_8#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 140984776;7899 ERS707740 ERX1145465 GENOMIC 14406209 595847500 2015-10-13 SC_RUN_17059_8#19 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065315/17059_8#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065315/17059_8#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#19 ERR1065159 SC_EXP_17059_6#48 444 75c6a354ec165395d06158407e61d2e4;6e3d92d33d74893548ea81efca5a9986 1313 d7421a04749892840c91a7a6fabe13cd;597974ed1b1d4ffe36c57545a320d7fa SAMEA3353255 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065159/ERR1065159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065159/ERR1065159_2.fastq.gz 6290518 WGS GPS_ZA_carriage_SP1188-sc-2277853 RANDOM 118447466;118290077 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065159/ERR1065159_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065159/ERR1065159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065159/17059_6#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065159/17059_6#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065159/ERR1065159_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065159/ERR1065159_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065159/17059_6#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065159/17059_6#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 197182622;10286 ERS707610 ERX1145309 GENOMIC 14397982 786314750 2015-10-13 SC_RUN_17059_6#48 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065159/17059_6#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065159/17059_6#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#48 ERR1065189 SC_EXP_17059_6#78 444 727272a4fb4d2d1788c8dbaf4497a34f;e22f96ffac381d958691441967159a9d 1313 ac5e96b8ebed6e55e72517fc112ec251;d7b965b03035131810907d5c9f4af011 SAMEA3353313 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065189/ERR1065189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065189/ERR1065189_2.fastq.gz 5171062 WGS GPS_ZA_carriage_SP1218-sc-2277911 RANDOM 99079214;100311912 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065189/ERR1065189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065189/ERR1065189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065189/17059_6#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065189/17059_6#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065189/ERR1065189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065189/ERR1065189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065189/17059_6#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065189/17059_6#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 163179268;8450 ERS707668 ERX1145339 GENOMIC 14397962 646382750 2015-10-13 SC_RUN_17059_6#78 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065189/17059_6#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065189/17059_6#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#78 ERR1065143 SC_EXP_17059_6#32 444 6283e39513ae6c56eadf0bccd9a51c22;d3e752dd225e9dceb6124eb4265c93ff 1313 b60f80c31be1c7230a0eaed6435f690e;62d8acb88c45c8e25d9771de6dd56c7b SAMEA3353224 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065143/ERR1065143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065143/ERR1065143_2.fastq.gz 5465702 WGS GPS_ZA_carriage_SP1172-sc-2277822 RANDOM 101148708;103324346 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065143/ERR1065143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065143/ERR1065143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065143/17059_6#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065143/17059_6#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065143/ERR1065143_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065143/ERR1065143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065143/17059_6#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065143/17059_6#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 169131934;9060 ERS707579 ERX1145293 GENOMIC 14397980 683212750 2015-10-13 SC_RUN_17059_6#32 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065143/17059_6#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065143/17059_6#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#32 ERR997656 SC_EXP_16399_7#35 213 da5185e40ba03aa5513d402de0c6c141;33e30e97ab526d53d44dbd31e49affb2 1313 30b0609441d0600d48a32116cc114fa7;1e9c62dfb4cbee433f4400b5225f8c41 SAMEA3309701 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997656/ERR997656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997656/ERR997656_2.fastq.gz 5888246 WGS GPS_GM_1719-sc-2206504 RANDOM 199760428;207232687 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997656/ERR997656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997656/ERR997656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997656/16399_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997656/16399_7#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997656/ERR997656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997656/ERR997656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997656/16399_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997656/16399_7#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333562487;9474 ERS686163 ERX1076692 GENOMIC 13843377 588824600 2015-09-04 SC_RUN_16399_7#35 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997656/16399_7#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997656/16399_7#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#35 ERR997594 SC_EXP_16399_6#53 220 9c846679dfbbe5f8d88429f881e7848a;2d9f02067f2bbd3b56871301b6fbf128 1313 952369643a8bae9e0c836ff19dc6e15f;c25c92cd05975cc1ad633830e07bac97 SAMEA3309632 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997594/ERR997594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997594/ERR997594_2.fastq.gz 5366834 WGS GPS_GM_1651-sc-2206435 RANDOM 181053905;187246122 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997594/ERR997594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997594/ERR997594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997594/16399_6#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997594/16399_6#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997594/ERR997594_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997594/ERR997594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997594/16399_6#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997594/16399_6#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300863357;8662 ERS686094 ERX1076630 GENOMIC 13835419 536683400 2015-09-04 SC_RUN_16399_6#53 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997594/16399_6#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997594/16399_6#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#53 ERR997553 SC_EXP_16399_6#12 220 cfd9aed5acd300e0e75b0c235869292b;8bc92e3c1702a0e9764ec1dc455bfdd3 1313 b4e033b9085dd151b72ce5fa6ed3b834;3a73d288cf239ee9df8434586fb2d261 SAMEA3309589 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997553/ERR997553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997553/ERR997553_2.fastq.gz 5969966 WGS GPS_GM_1608-sc-2206391 RANDOM 200300452;207762782 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997553/ERR997553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997553/ERR997553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997553/16399_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997553/16399_6#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997553/ERR997553_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997553/ERR997553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997553/16399_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997553/16399_6#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333750468;9616 ERS686051 ERX1076589 GENOMIC 13835402 596996600 2015-09-04 SC_RUN_16399_6#12 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997553/16399_6#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997553/16399_6#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#12 ERR997516 SC_EXP_16399_5#55 228 4a0dd29c5daf45661d572f81bc89ef28;b2e0ec5ecf56ffaff3ac4dd1c0c6f076 1313 fd7cb2e81e03d463e9f63f9a4674a7b8;c7775af477d8e8ebc93a679f9d40104f SAMEA3309533 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997516/ERR997516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997516/ERR997516_2.fastq.gz 5067304 WGS GPS_GM_1553-sc-2206335 RANDOM 162422568;168790635 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997516/ERR997516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997516/ERR997516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997516/16399_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997516/16399_5#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997516/ERR997516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997516/ERR997516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997516/16399_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997516/16399_5#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270215174;8246 ERS685995 ERX1076552 GENOMIC 13835542 506730400 2015-09-04 SC_RUN_16399_5#55 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997516/16399_5#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997516/16399_5#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#55 ERR980305 SC_EXP_16288_8#32 202 fb44d3d0bd5fd64d432a4eea49e4d309;fdc349d4769f45e716be20e54c39e8e8 1313 37c4d0064fc87a2507af7d9ee7970f02;132de688e5029e41d642df4d8b7cbc05 SAMEA3232798 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980305/ERR980305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980305/ERR980305_2.fastq.gz 4700662 WGS GPS_NP_1333-sc-2205710 RANDOM 158994016;155553331 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980305/ERR980305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980305/ERR980305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980305/16288_8#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980305/16288_8#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980305/ERR980305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980305/ERR980305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980305/16288_8#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980305/16288_8#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253335020;7562 ERS654009 ERX1057177 GENOMIC 13301836 470066200 2015-08-12 SC_RUN_16288_8#32 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980305/16288_8#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980305/16288_8#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#32 ERR980263 SC_EXP_16288_7#73 201 f25d1c695ad4be9661b7ef0aceaef83b;bd74181bbd6fbcda093555310bc6c154 1313 5631e88ed7bce1b5a14aedf8fbcee7fa;739a65e1a6f3957bc845c657bd23a879 SAMEA3232748 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980263/ERR980263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980263/ERR980263_2.fastq.gz 5657056 WGS GPS_NP_1223-sc-2205668 RANDOM 194272787;189944116 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980263/ERR980263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980263/ERR980263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980263/16288_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980263/16288_7#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980263/ERR980263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980263/ERR980263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980263/16288_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980263/16288_7#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312361530;8904 ERS653959 ERX1057135 GENOMIC 13304012 565705600 2015-08-12 SC_RUN_16288_7#73 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980263/16288_7#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980263/16288_7#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#73 ERR980181 SC_EXP_16288_6#60 206 a54eccd4f4cd0863d8c30438ab5dcfef;b19abf6cef790d8e3f6620b1689c9bf7 1313 71bbed520c3c9ef84f57c7f0349bec91;ea9d2f695b7cab62abb001a0fa9c44c9 SAMEA3232652 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980181/ERR980181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980181/ERR980181_2.fastq.gz 3252164 WGS GPS_NP_3772-sc-2205571 RANDOM 112095957;108495060 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980181/ERR980181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980181/ERR980181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980181/16288_6#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980181/16288_6#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980181/ERR980181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980181/ERR980181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980181/16288_6#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980181/16288_6#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 176125243;5335 ERS653863 ERX1057053 GENOMIC 13303949 325216400 2015-08-12 SC_RUN_16288_6#60 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980181/16288_6#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980181/16288_6#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_6#60 ERR979951 SC_EXP_16288_3#78 234 ad137d316a1e884362e6ed6bcc2d2840;bc8a75c17c6a179193f0a45595e3a2e6 1313 9f4ce0769f159884b742adeb9f87587e;3686d524ad70030a904a02b60438dde9 SAMEA3232421 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979951/ERR979951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979951/ERR979951_2.fastq.gz 4172862 WGS GPS_NP_2075-sc-2205339 RANDOM 135607730;132429549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979951/ERR979951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979951/ERR979951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979951/16288_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979951/16288_3#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979951/ERR979951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979951/ERR979951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979951/16288_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979951/16288_3#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 216671978;6825 ERS653632 ERX1056823 GENOMIC 13296205 417286200 2015-08-12 SC_RUN_16288_3#78 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979951/16288_3#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979951/16288_3#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#78 ERR979897 SC_EXP_16288_3#24 234 84de18c57b56b001d3df48a494f086f1;6b7153dfb87c60cbb0e9f740da9f7c4a 1313 b1ea0d4a2febb73a3affec761cee3de4;80bce8ba2974ac243e568af1aa693da5 SAMEA3232367 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979897/ERR979897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979897/ERR979897_2.fastq.gz 4416616 WGS GPS_NP_0044-sc-2205284 RANDOM 143894483;141594065 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979897/ERR979897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979897/ERR979897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979897/16288_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979897/16288_3#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979897/ERR979897_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979897/ERR979897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979897/16288_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979897/16288_3#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 231111072;7114 ERS653577 ERX1056769 GENOMIC 13296222 441661600 2015-08-12 SC_RUN_16288_3#24 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979897/16288_3#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979897/16288_3#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#24 ERR980109 SC_EXP_16288_5#71 218 808aeac69370e7ba89861e0a8639e592;12549a84206a8f0743fca9377f4bdf3d 1313 99793ede21bf74249d66c32fb811870b;9d54cf4fdb1c5c4a4a0414fd84edf204 SAMEA3232580 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980109/ERR980109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980109/ERR980109_2.fastq.gz 4363964 WGS GPS_NP_3157-sc-2205498 RANDOM 147192712;146335319 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980109/ERR980109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980109/ERR980109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980109/16288_5#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980109/16288_5#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980109/ERR980109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980109/ERR980109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980109/16288_5#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980109/16288_5#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238720585;7159 ERS653791 ERX1056981 GENOMIC 13296410 436396400 2015-08-12 SC_RUN_16288_5#71 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980109/16288_5#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980109/16288_5#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#71 ERR925027 SC_EXP_15995_1#1 231 a99fdb167f2f8f9e00ceb6d47197b238;58ff8b177c2e653ff690ce2bec120bbe 1313 7e8829d50e85196da6a927d259594c0f;08fcd594f67a044841029c9f2c16098f SAMEA3206721 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925027/ERR925027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925027/ERR925027_2.fastq.gz 2032598 WGS GPS_ZA_carriage_SP96-sc-2191655 RANDOM 61586123;64193477 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925027/ERR925027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925027/ERR925027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925027/15995_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925027/15995_1#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925027/ERR925027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925027/ERR925027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925027/15995_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925027/15995_1#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 102856238;3427 ERS638731 ERX1004302 GENOMIC 13240968 203259800 2015-06-23 SC_RUN_15995_1#1 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925027/15995_1#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925027/15995_1#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#1 ERR925340 SC_EXP_15995_2#130 219 60b96473409980fb75f24abc2a64cbf8;06a1d33693e9f8239845d5dd66d61c80 1313 fd26c0a884999a18a5ceedc509d788f4;82d5ec0078022008b8fb8f894a033155 SAMEA3209060 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925340/ERR925340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925340/ERR925340_2.fastq.gz 1881250 WGS GPS_ZA_carriage_SP1062-sc-2205198 RANDOM 58933096;61043606 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925340/ERR925340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925340/ERR925340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925340/15995_2#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925340/15995_2#130.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925340/ERR925340_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925340/ERR925340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925340/15995_2#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925340/15995_2#130.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 97682351;3193 ERS640162 ERX1004615 GENOMIC 13301227 188125000 2015-06-23 SC_RUN_15995_2#130 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925340/15995_2#130.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925340/15995_2#130.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#130 ERR909033 SC_EXP_15841_2#89 229 5f2b4419f6e61ae03d1e39f6969e2424;f3fccae195d33e52c00b2af9e572c872 1313 e026609694128f0ee3011e87b1a8e2e7;a311fc7f675d58cc778bb847704a6aff SAMEA3207285 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909033/ERR909033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909033/ERR909033_2.fastq.gz 5249134 WGS GPS_ZA_carriage_SP582-sc-2192223 RANDOM 168109477;173329762 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909033/ERR909033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909033/ERR909033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909033/15841_2#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909033/15841_2#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909033/ERR909033_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909033/ERR909033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909033/15841_2#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909033/15841_2#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277926478;8465 ERS639295 ERX988288 GENOMIC 13265091 524913400 2015-06-09 SC_RUN_15841_2#89 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909033/15841_2#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909033/15841_2#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#89 ERR876685 SC_EXP_15608_4#67 214 2404331822de3ee8fc61d4c3a5340a01;3aced04b85c22c102d77e02fc2a59227 1313 0f6d2c1e8a862c5491552f03e88813bd;4e0a12596404dffa4664aac9e995236d SAMEA3175913 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876685/ERR876685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876685/ERR876685_2.fastq.gz 6135886 WGS GPS_US_PATH6526-sc-2190955 RANDOM 193246627;199601898 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876685/ERR876685_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876685/ERR876685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876685/15608_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876685/15608_4#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876685/ERR876685_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876685/ERR876685_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876685/15608_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876685/15608_4#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 317266444;9904 ERS628861 ERX956248 GENOMIC 13029948 613588600 2015-05-12 SC_RUN_15608_4#67 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876685/15608_4#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876685/15608_4#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_4#67 ERR900732 SC_EXP_15731_8#87 230 dab517e2588a65aebbe2f45c878bc4be;7a736dffdef098b24ab7b46397aa9a5f 1313 74916f2316d0af6710459713b6dbb768;45b1a6f0bdce54562dbfc24be246e08b SAMEA3206712 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900732/ERR900732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900732/ERR900732_2.fastq.gz 4913136 WGS GPS_ZA_carriage_SP83-sc-2191645 RANDOM 149811591;156014124 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900732/ERR900732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900732/ERR900732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900732/15731_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900732/15731_8#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900732/ERR900732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900732/ERR900732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900732/15731_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900732/15731_8#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247369361;7856 ERS638722 ERX980121 GENOMIC 13208956 491313600 2015-05-26 SC_RUN_15731_8#87 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900732/15731_8#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900732/15731_8#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#87 ERR876523 SC_EXP_15608_2#93 215 456e88d86b66fcff98516354d87c5e78;f7ef3ed9d6121a6353981bd811a47c05 1313 4bb8319aa7bbb35b9819b8682c8fd0df;6dd5211ef639a685304a760924ff2731 SAMEA3175762 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876523/ERR876523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876523/ERR876523_2.fastq.gz 4884410 WGS GPS_US_1220_99_R1-sc-2190798 RANDOM 155430562;160420649 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876523/ERR876523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876523/ERR876523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876523/15608_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876523/15608_2#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876523/ERR876523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876523/ERR876523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876523/15608_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876523/15608_2#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256734799;7679 ERS628710 ERX956086 GENOMIC 13024224 488441000 2015-05-12 SC_RUN_15608_2#93 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876523/15608_2#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876523/15608_2#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#93 ERR870166 SC_EXP_15531_5#69 214 2e3259178132a8615a12f4bf97cdd2d7;70b160601644b0a0db5365dd6c843142 1313 8ce634c949acd4d45bb29386b1e65631;3f11cea15e839d0c1196adb8ab765595 SAMEA3172906 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870166/ERR870166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870166/ERR870166_2.fastq.gz 4305100 WGS GPS_GM_1050-sc-2190464 RANDOM 169059733;161133714 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870166/ERR870166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870166/ERR870166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870166/15531_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870166/15531_5#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870166/ERR870166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870166/ERR870166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870166/15531_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870166/15531_5#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274641591;6850 ERS627149 ERX949767 GENOMIC 12870947 430510000 2015-05-06 SC_RUN_15531_5#69 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870166/15531_5#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870166/15531_5#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#69 ERR870162 SC_EXP_15531_5#65 214 eb3759378dfc5db4f230ed20f76b503d;c2bb33b4b29ba3aff7962947821bd6c8 1313 87c788fd35df4e82b3395902f3bb45cd;bff5731cbc315a5c2f5ef82340ca36be SAMEA3172902 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870162/ERR870162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870162/ERR870162_2.fastq.gz 4924238 WGS GPS_GM_1046-sc-2190460 RANDOM 192574975;183223766 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870162/ERR870162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870162/ERR870162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870162/15531_5#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870162/15531_5#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870162/ERR870162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870162/ERR870162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870162/15531_5#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870162/15531_5#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313578092;7856 ERS627145 ERX949763 GENOMIC 12870879 492423800 2015-05-06 SC_RUN_15531_5#65 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870162/15531_5#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870162/15531_5#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#65 ERR870136 SC_EXP_15531_5#39 214 99ff151c7aaef3119db2ba4f443cdfa3;2e3be8bca0c9e76e8856b5352610e720 1313 4ee4202804d25d46844bb8dc7498363a;23614e2d8820aeede1abf34b8b93b59c SAMEA3172848 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870136/ERR870136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870136/ERR870136_2.fastq.gz 4140550 WGS GPS_GM_1019-sc-2190405 RANDOM 158695143;151334920 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870136/ERR870136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870136/ERR870136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870136/15531_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870136/15531_5#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870136/ERR870136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870136/ERR870136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870136/15531_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870136/15531_5#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256662496;6744 ERS627091 ERX949737 GENOMIC 12870967 414055000 2015-05-06 SC_RUN_15531_5#39 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870136/15531_5#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870136/15531_5#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#39 ERR869842 SC_EXP_15531_2#29 193 41b82bfc05ebd268370c763f1ed19401;209f595697645d12e40fc277f96c5189 1313 b4b87305b5662a78da58209c5d9b9c9e;8c9ac901126b35e8455ff30002ae834d SAMEA3171262 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869842/ERR869842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869842/ERR869842_2.fastq.gz 3891080 WGS GPS_MW_155277-sc-2139826 RANDOM 150244756;144099340 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869842/ERR869842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869842/ERR869842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869842/15531_2#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869842/15531_2#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869842/ERR869842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869842/ERR869842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869842/15531_2#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869842/15531_2#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242546141;6209 ERS625653 ERX949443 GENOMIC 12862676 389108000 2015-05-06 SC_RUN_15531_2#29 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869842/15531_2#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869842/15531_2#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_2#29 ERR870002 SC_EXP_15531_3#95 199 cb48c81b3080d8568f9635b0349708f1;42ab7a48fb9191ac27bce3d7bdc964e6 1313 97c65b60288099ba25a6b4ca7f54c94a;76a756ac91aa52e4ba959ccde1d1b03c SAMEA3171599 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870002/ERR870002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870002/ERR870002_2.fastq.gz 4129818 WGS GPS_MW_BKR4MI-sc-2139993 RANDOM 158021116;150761478 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870002/ERR870002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870002/ERR870002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870002/15531_3#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870002/15531_3#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870002/ERR870002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870002/ERR870002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870002/15531_3#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870002/15531_3#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256630431;6637 ERS625990 ERX949603 GENOMIC 12862611 412981800 2015-05-06 SC_RUN_15531_3#95 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870002/15531_3#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870002/15531_3#95.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_3#95 ERR870065 SC_EXP_15531_4#63 207 5f9fdf0419959b095629d4db0327800e;7354e17dc83605da3d3064d4a93e6b7d 1313 6073234cb07d61e93d88d1f69aac84d9;78750b0465d1459ec4c22ac2583ead91 SAMEA3172811 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870065/ERR870065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870065/ERR870065_2.fastq.gz 4632308 WGS GPS_GM_0938-sc-2190368 RANDOM 177036938;168688867 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870065/ERR870065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870065/ERR870065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870065/15531_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870065/15531_4#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870065/ERR870065_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870065/ERR870065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870065/15531_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870065/15531_4#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288582208;7530 ERS627054 ERX949666 GENOMIC 12882860 463230800 2015-05-06 SC_RUN_15531_4#63 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870065/15531_4#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870065/15531_4#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#63 ERR2305240 SC_EXP_22695_3#199 427 bbbfb315e2b213a75ad73063f1191b0f;e4d8217b4bd6b9e6e5213c01dd5e6d8b 1313 ce1d418e22a303e63819933334bb8b84;134ad15d9fbc407a03049ae3f33dea07 SAMEA104034883 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305240/ERR2305240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305240/ERR2305240_2.fastq.gz 1922612 WGS faa50a40-13c3-11e7-942b-3c4a9275d6c8 RANDOM 53500701;72039059 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305240/ERR2305240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305240/ERR2305240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305240/22695_3#199.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305240/22695_3#199.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305240/ERR2305240_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305240/ERR2305240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305240/22695_3#199.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305240/22695_3#199.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92577308;3303 ERS1698776 ERX2356550 GENOMIC DN477146R:A2 290314412 2018-02-16 SC_RUN_22695_3#199 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305240/22695_3#199.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305240/22695_3#199.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808851 ERR925076 SC_EXP_15995_1#50 231 ce67408d199cc05ec08d65ddbe4cc828;52613b722fd494ebdf2273f5ee66a8b8 1313 4d592c46cc00278adc30888f3e5819ad;83dcf6a3b716260a883b42a6bc7b1ff7 SAMEA3206807 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925076/ERR925076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925076/ERR925076_2.fastq.gz 1739154 WGS GPS_ZA_carriage_SP114-sc-2191741 RANDOM 53378872;55618622 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925076/ERR925076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925076/ERR925076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925076/15995_1#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925076/15995_1#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925076/ERR925076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925076/ERR925076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925076/15995_1#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925076/15995_1#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88433516;2964 ERS638817 ERX1004351 GENOMIC 13240986 173915400 2015-06-23 SC_RUN_15995_1#50 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925076/15995_1#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925076/15995_1#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#50 ERR2305330 SC_EXP_22695_3#289 424 7003b9b30f24a43b3b052c31c0507907;e32f6202d3b529dee842b04817938db5 1313 d1fdb92a984245f3eba6b9155d6c17be;2f10842db31e43473e4c79ae46e02507 SAMEA104035063 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305330/ERR2305330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305330/ERR2305330_2.fastq.gz 2687818 WGS 08c97e30-13c4-11e7-942b-3c4a9275d6c8 RANDOM 72817330;97911331 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305330/ERR2305330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305330/ERR2305330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305330/22695_3#289.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305330/22695_3#289.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305330/ERR2305330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305330/ERR2305330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305330/22695_3#289.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305330/22695_3#289.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 125353359;4487 ERS1698956 ERX2356640 GENOMIC DN477147S:D1 405860518 2018-02-16 SC_RUN_22695_3#289 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305330/22695_3#289.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305330/22695_3#289.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809038 ERR925035 SC_EXP_15995_1#9 231 4417e785f66fc5ec132f4bfb7f2cd000;c392995dfb640a24420f313534f97fff 1313 205312028bcaf9f1b96dd137ae0b3079;cf3a1d6154a44fa34f62aaad0365cd86 SAMEA3206729 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925035/ERR925035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925035/ERR925035_2.fastq.gz 1979452 WGS GPS_ZA_carriage_SP97-sc-2191663 RANDOM 60171294;62656137 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925035/ERR925035_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925035/ERR925035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925035/15995_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925035/15995_1#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925035/ERR925035_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925035/ERR925035_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925035/15995_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925035/15995_1#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 99843791;3346 ERS638739 ERX1004310 GENOMIC 13240969 197945200 2015-06-23 SC_RUN_15995_1#9 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925035/15995_1#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925035/15995_1#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#9 ERR913310 SC_EXP_15873_3#76 216 4f41c0123a1ad28ec54f3b3bd98d0b05;ea510144826ae6ba72c4cbf22a6a9d14 1313 cf489e7ff2fb50351186e09d40f7662a;5e6e7757ee7c1ee57c43780fea923a44 SAMEA3233272 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913310/ERR913310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913310/ERR913310_2.fastq.gz 6802042 WGS GPS_GM_1396-sc-2206029 RANDOM 211485438;220694330 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913310/ERR913310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913310/ERR913310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913310/15873_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913310/15873_3#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913310/ERR913310_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913310/ERR913310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913310/15873_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913310/15873_3#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 351233081;10889 ERS654465 ERX992434 GENOMIC 13308185 680204200 2015-06-17 SC_RUN_15873_3#76 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913310/15873_3#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913310/15873_3#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#76 ERR913510 SC_EXP_15874_1#30 217 0ed7e05cdab68d16ac913d20aa309548;0e0e08a54dce480e44b62bc919b0df75 1313 a85f6f36615a369472168628976b715e;c84ae30b0030ba0f55acfbc52c4d1067 SAMEA3207035 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913510/ERR913510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913510/ERR913510_2.fastq.gz 5411120 WGS GPS_ZA_carriage_SP444-sc-2191972 RANDOM 163795460;174417055 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913510/ERR913510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913510/ERR913510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913510/15874_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913510/15874_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913510/ERR913510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913510/ERR913510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913510/15874_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913510/15874_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274377069;8402 ERS639045 ERX992634 GENOMIC 13242112 541112000 2015-06-17 SC_RUN_15874_1#30 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913510/15874_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913510/15874_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#30 ERR909164 SC_EXP_15841_4#30 228 c58d638ce33081ab27467244f80e7d20;dd4cf14e5a936046d0efc8f9a490ea88 1313 942ad943b034b1b51da1e40cda37a97f;1b72958345b6bd17150db82617a48ac6 SAMEA3208771 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909164/ERR909164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909164/ERR909164_2.fastq.gz 5313820 WGS GPS_ZA_carriage_SP824-sc-2204906 RANDOM 173088283;179017009 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909164/ERR909164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909164/ERR909164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909164/15841_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909164/15841_4#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909164/ERR909164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909164/ERR909164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909164/15841_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909164/15841_4#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286037722;8280 ERS639873 ERX988419 GENOMIC 13267968 531382000 2015-06-09 SC_RUN_15841_4#30 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909164/15841_4#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909164/15841_4#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#30 ERR909137 SC_EXP_15841_4#3 228 c7257de70694192b5b03959a518f2d94;f84adc8df600b84a9c7a329a0ee280c6 1313 1bc3e9b8a76d2106e50e97ec2d80bd6a;d50e913ea1b0784d48c2a0d836320024 SAMEA3208744 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909137/ERR909137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909137/ERR909137_2.fastq.gz 5498378 WGS GPS_ZA_carriage_SP785-sc-2204879 RANDOM 173702111;182070488 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909137/ERR909137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909137/ERR909137_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909137/15841_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909137/15841_4#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909137/ERR909137_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909137/ERR909137_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909137/15841_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909137/15841_4#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289334410;8876 ERS639846 ERX988392 GENOMIC 13267929 549837800 2015-06-09 SC_RUN_15841_4#3 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909137/15841_4#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909137/15841_4#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#3 ERR908859 SC_EXP_15841_1#10 206 0ce3566d818ca68be7af0577de5885df;004cfeb355e5cdb99832349fbe6d96db 1313 6ba9b7a50850f67aa27ba64a20f0c3f4;b69738f25076d171a8ecb2a79f17b14f SAMEA3206767 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908859/ERR908859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908859/ERR908859_2.fastq.gz 4669592 WGS GPS_ZA_carriage_SP204-sc-2191701 RANDOM 147281362;152054373 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908859/ERR908859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908859/ERR908859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908859/15841_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908859/15841_1#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908859/ERR908859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908859/ERR908859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908859/15841_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908859/15841_1#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241429678;7431 ERS638777 ERX988114 GENOMIC 13227450 466959200 2015-06-09 SC_RUN_15841_1#10 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908859/15841_1#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908859/15841_1#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#10 ERR909081 SC_EXP_15841_3#42 225 ea09430a9571a461a871e97f755cc2cd;76100f5d300637162c10d94f445660ad 1313 992224162f24d80372bfbb40b2614cec;23826e69c04dabb4f18fe2941efa5121 SAMEA3208688 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909081/ERR909081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909081/ERR909081_2.fastq.gz 4879930 WGS GPS_ZA_carriage_SP683-sc-2204822 RANDOM 149493218;154925131 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909081/ERR909081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909081/ERR909081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909081/15841_3#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909081/15841_3#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909081/ERR909081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909081/ERR909081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909081/15841_3#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909081/15841_3#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244930566;7810 ERS639790 ERX988336 GENOMIC 13267805 487993000 2015-06-09 SC_RUN_15841_3#42 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909081/15841_3#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909081/15841_3#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#42 ERR909037 SC_EXP_15841_2#93 229 080e839aef4709043a8018c763f2c1ae;8a92c435ddfbcddf5e7f9f98736c202e 1313 ded50becb4d6332e13eefb2168992682;cb886bcba11d32e110dd5d2ca67d8e6e SAMEA3207289 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909037/ERR909037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909037/ERR909037_2.fastq.gz 5592632 WGS GPS_ZA_carriage_SP630-sc-2192227 RANDOM 182776837;188300189 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909037/ERR909037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909037/ERR909037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909037/15841_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909037/15841_2#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909037/ERR909037_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909037/ERR909037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909037/15841_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909037/15841_2#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301178035;8881 ERS639299 ERX988292 GENOMIC 13265139 559263200 2015-06-09 SC_RUN_15841_2#93 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909037/15841_2#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909037/15841_2#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#93 ERR870267 SC_EXP_15531_6#75 212 53ba02ef9b1f13a3e98ac53191864b8b;6dfa58d10c66ce93ff4a5258b203ee70 1313 a556118f12c8dc6cb2b913c6d46e103d;d84b1f1f692417fc4ecea4d3ef76cfda SAMEA3173018 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870267/ERR870267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870267/ERR870267_2.fastq.gz 4512262 WGS GPS_GM_1162-sc-2190577 RANDOM 173078524;163376524 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870267/ERR870267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870267/ERR870267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870267/15531_6#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870267/15531_6#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870267/ERR870267_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870267/ERR870267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870267/15531_6#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870267/15531_6#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279046063;7269 ERS627261 ERX949868 GENOMIC 12870049 451226200 2015-05-06 SC_RUN_15531_6#75 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870267/15531_6#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870267/15531_6#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#75 ERR909261 SC_EXP_15841_5#32 223 a53d85ac7e34aaf582ff44ae0c8fe39e;df737f44e4f777ddb4dba3e75c169f77 1313 d70f1053d84b47dcc609036bc80ccf7a;6187dbb1542a29a97481ab8fbedb6e23 SAMEA3206942 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909261/ERR909261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909261/ERR909261_2.fastq.gz 5189460 WGS GPS_ZA_carriage_SP373-sc-2191878 RANDOM 166585237;171693608 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909261/ERR909261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909261/ERR909261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909261/15841_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909261/15841_5#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909261/ERR909261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909261/ERR909261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909261/15841_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909261/15841_5#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272599145;8181 ERS638952 ERX988516 GENOMIC 13276010 518946000 2015-06-09 SC_RUN_15841_5#32 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909261/15841_5#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909261/15841_5#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#32 ERR774308 SC_EXP_14913_7#24 228 fedef79ef4fe7c8ae2f3c41e690300c7;551ef081d89ad82275a4f81d76472e3f 1313 caebbb50fb6cf052a34a8cc0c89d36de;f85726d0d72bc5b68b36d5bdd1ed7b49 SAMEA2814234 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774308/ERR774308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774308/ERR774308_2.fastq.gz 5426450 WGS GPS_ZA_2446-sc-2022731 RANDOM 180661927;189934561 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774308/ERR774308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774308/ERR774308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774308/14913_7#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774308/14913_7#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774308/ERR774308_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774308/ERR774308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774308/14913_7#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774308/14913_7#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304363006;8677 ERS566602 ERX717187 GENOMIC 12358007 542645000 2015-03-03 SC_RUN_14913_7#24 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774308/14913_7#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774308/14913_7#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#24 ERR870019 SC_EXP_15531_4#17 207 7d886d6b184168502ec4aadbcefb0726;1f89a07719fdf3769b880be8a74336af 1313 6ac51e32e90a9ff86b50b9d8bb72bdad;76b24f78fa88d0ca0569f685292c6a87 SAMEA3171616 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870019/ERR870019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870019/ERR870019_2.fastq.gz 3909892 WGS GPS_MW_154457-sc-2140010 RANDOM 152815444;145104906 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870019/ERR870019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870019/ERR870019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870019/15531_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870019/15531_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870019/ERR870019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870019/ERR870019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870019/15531_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870019/15531_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246268877;6267 ERS626007 ERX949620 GENOMIC 12882783 390989200 2015-05-06 SC_RUN_15531_4#17 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870019/15531_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870019/15531_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#17 ERR773834 SC_EXP_14913_2#20 226 aa81c6abba57e7cde1708661cd936d09;5ef6e62076a82ade2b0be600a8e8c5d0 1313 22288bae017546cfc6bc05a7b83b966d;05eff876ee0e71ab02129ebff99e37ab SAMEA2814017 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773834/ERR773834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773834/ERR773834_2.fastq.gz 4978900 WGS GPS_ZA_2252-sc-2022501 RANDOM 168220713;174487740 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773834/ERR773834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773834/ERR773834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773834/14913_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773834/14913_2#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773834/ERR773834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773834/ERR773834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773834/14913_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773834/14913_2#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280714850;7873 ERS566385 ERX716713 GENOMIC 12395922 497890000 2015-03-03 SC_RUN_14913_2#20 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773834/14913_2#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773834/14913_2#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#20 ERR774263 SC_EXP_14913_6#74 223 b7b64b572ec5777f4f58f66a3c24b728;b0b3778b72c206a746071bad18552287 1313 3c5e1081dddcde3f05c271069e7c7cdc;269f562782e42127595d6f62fe506ecc SAMEA2814569 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774263/ERR774263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774263/ERR774263_2.fastq.gz 4058380 WGS GPS_ZA_2766-sc-2138365 RANDOM 126553613;132809248 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774263/ERR774263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774263/ERR774263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774263/14913_6#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774263/14913_6#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774263/ERR774263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774263/ERR774263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774263/14913_6#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774263/14913_6#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 210728043;6478 ERS566937 ERX717142 GENOMIC 12334817 405838000 2015-03-03 SC_RUN_14913_6#74 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774263/14913_6#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774263/14913_6#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#74 ERR773989 SC_EXP_14913_3#81 225 118a988e72c44e3e43bcc87910a55dd5;e5b0b175c84003e450e1081a6a1845e5 1313 0512a4bf3f56e85966f304a85077694b;a36dd851e09b72b2a4a825870cab9fbc SAMEA2814091 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773989/ERR773989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773989/ERR773989_2.fastq.gz 5365872 WGS GPS_ZA_2218-sc-2022575 RANDOM 180597517;186553001 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773989/ERR773989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773989/ERR773989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773989/14913_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773989/14913_3#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773989/ERR773989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773989/ERR773989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773989/14913_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773989/14913_3#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300581559;8606 ERS566459 ERX716868 GENOMIC 12345920 536587200 2015-03-03 SC_RUN_14913_3#81 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773989/14913_3#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773989/14913_3#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#81 ERR730158 SC_EXP_14520_4#18 222 49be9b56661829d41f06ad9f7ac4b351;3b5279c636855ca41fe7df2c1313da55 1313 86f6d78a7af736c7bff9faa53078b051;9a733d39a99ee135af6b3ab952a72d69 SAMEA2696299 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730158/ERR730158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730158/ERR730158_2.fastq.gz 6430642 WGS GPS_GM_0536-sc-2021755 RANDOM 243275188;246328659 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730158/ERR730158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730158/ERR730158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730158/14520_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730158/14520_4#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730158/ERR730158_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730158/ERR730158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730158/14520_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730158/14520_4#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 406715886;10308 ERS524878 ERX674104 GENOMIC 11982757 643064200 2015-01-14 SC_RUN_14520_4#18 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730158/14520_4#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730158/14520_4#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#18 ERR742548 SC_EXP_14673_3#46 214 7f0135b5d42e0c5b1fe9214b7f8a1f25;1f1bb28f4f1af75cfd8a3d812ca097b5 1313 4a8c20b5b1aae1341e73cdd3304b08eb;60c7d3069f3c2e0ffc99b045f1ca42ce SAMEA2796644 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742548/ERR742548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742548/ERR742548_2.fastq.gz 4341446 WGS GPS_US_3994_03-sc-2138625 RANDOM 140830145;146289709 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742548/ERR742548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742548/ERR742548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742548/14673_3#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742548/14673_3#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742548/ERR742548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742548/ERR742548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742548/14673_3#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742548/14673_3#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 233349401;6909 ERS558255 ERX686231 GENOMIC 12061937 434144600 2015-01-27 SC_RUN_14673_3#46 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742548/14673_3#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742548/14673_3#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#46 ERR716142 SC_EXP_14355_8#59 222 531ba9a6b7c449e80615dbfa30a6a3bd;214ea3884fc578449dd67a77ce1d7afb 1313 e0bbcd6464149f4ae61791c25b07bc6e;cedee6010b9d05ad1e3b91a55d2b2d41 SAMEA2674586 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716142/ERR716142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716142/ERR716142_2.fastq.gz 3520850 WGS 841422_I-sc-2019938 RANDOM 118176908;118847695 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716142/ERR716142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716142/ERR716142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716142/14355_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716142/14355_8#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716142/ERR716142_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716142/ERR716142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716142/14355_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716142/14355_8#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 193584433;5803 ERS515101 ERX660064 GENOMIC 11625762 352085000 2015-01-08 SC_RUN_14355_8#59 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716142/14355_8#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716142/14355_8#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 ERR716174 SC_EXP_14355_8#91 222 a27b186e8413d78a65b7d588d5ed495b;64f4adecbf04b590b23d1ecba2173606 1313 d9be57725cdf6bb178b689964fd2d92c;add620fe035620b85ee2a32696f76e61 SAMEA2674618 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716174/ERR716174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716174/ERR716174_2.fastq.gz 3384108 WGS 871016_II-sc-2019970 RANDOM 113757609;114335260 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716174/ERR716174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716174/ERR716174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716174/14355_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716174/14355_8#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716174/ERR716174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716174/ERR716174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716174/14355_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716174/14355_8#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 184634934;5572 ERS515133 ERX660096 GENOMIC 11625766 338410800 2015-01-08 SC_RUN_14355_8#91 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716174/14355_8#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716174/14355_8#91.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 14355_8#91 ERR730947 SC_EXP_14566_6#92 237 b37cb2e55cdce6b783ad76c7e2cb77ac;3d08620d60026cc6a3ee16178fdb8045 1313 7fbc8267336e8c9f97c0ef8b5ca47673;b94d1cc3dc3c7e784f1ad2e31d2fb40f SAMEA2659082 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730947/ERR730947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730947/ERR730947_2.fastq.gz 4402490 WGS GPS_ZA_2039-sc-2021719 RANDOM 134190131;138477261 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730947/ERR730947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730947/ERR730947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730947/14566_6#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730947/14566_6#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730947/ERR730947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730947/ERR730947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730947/14566_6#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730947/14566_6#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222430189;7165 ERS509110 ERX674893 GENOMIC 11887147 440249000 2015-01-14 SC_RUN_14566_6#92 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730947/14566_6#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730947/14566_6#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#92 ERR730346 SC_EXP_14520_6#18 215 0074af07ae8eaf8009a0f38c5211a74a;8d5164681724787a5348293f1c9a1a35 1313 5ff30c4ef1e5ba1dd780cf057b5ddb66;56621938809637120daa40935ec7ab0e SAMEA2696437 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730346/ERR730346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730346/ERR730346_2.fastq.gz 4789854 WGS GPS_GM_0726-sc-2021892 RANDOM 176885140;180654097 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730346/ERR730346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730346/ERR730346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730346/14520_6#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730346/14520_6#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730346/ERR730346_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730346/ERR730346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730346/14520_6#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730346/14520_6#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294717193;7781 ERS525016 ERX674292 GENOMIC 11983301 478985400 2015-01-14 SC_RUN_14520_6#18 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730346/14520_6#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730346/14520_6#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#18 ERR716173 SC_EXP_14355_8#90 222 40caa49bc5ae780ecd96c337cbfb8231;c27e4b135c68ca37feafd08bab3a2c99 1313 4a8485c967e7f27415206982fb71d3ab;24409ff6e6728f6aa23b1f1144657bee SAMEA2674617 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716173/ERR716173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716173/ERR716173_2.fastq.gz 3373592 WGS 871016_I-sc-2019969 RANDOM 113486990;114090522 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716173/ERR716173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716173/ERR716173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716173/14355_8#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716173/14355_8#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716173/ERR716173_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716173/ERR716173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716173/14355_8#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716173/14355_8#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 184725269;5543 ERS515132 ERX660095 GENOMIC 11625754 337359200 2015-01-08 SC_RUN_14355_8#90 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716173/14355_8#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716173/14355_8#90.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 14355_8#90 ERR633036 SC_EXP_13415_8#13 232 58f77bb3a2c1d2a977b575e331de3d66;60f5425ee2260c365d1dabd4a164d723 1313 3a4c53a124a359e27ba570d03d331209;90b3d223e3f6fb87ad642c9ea473cd41 SAMEA2554220 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633036/ERR633036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633036/ERR633036_2.fastq.gz 4872822 WGS GPS_ZA_1109-sc-1951258 RANDOM 163877454;168950943 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633036/ERR633036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633036/ERR633036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633036/13415_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633036/13415_8#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633036/ERR633036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633036/ERR633036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633036/13415_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633036/13415_8#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274490177;7952 ERS464721 ERX589590 GENOMIC 10663355 487282200 2014-09-23 SC_RUN_13415_8#13 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633036/13415_8#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633036/13415_8#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#13 ERR596415 SC_EXP_13353_7#70 259 0237445374bf94e19ad153ed39f7f615;937767b992eeb61b23b366b27fe440c2 1313 416a370d22d42e9e2a7841cba55c42f5;9968dcadb2f57e590716c3f3970c5aba SAMEA2521811 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596415/ERR596415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596415/ERR596415_2.fastq.gz 9641996 WGS 2012219822-sc-1947105 RANDOM 318294755;325257468 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596415/ERR596415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596415/ERR596415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596415/13353_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596415/13353_7#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596415/ERR596415_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596415/ERR596415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596415/13353_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596415/13353_7#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 531720077;14789 ERS455351 ERX553378 GENOMIC 10552902 964199600 2014-09-09 SC_RUN_13353_7#70 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596415/13353_7#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596415/13353_7#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#70 ERR600540 SC_EXP_13415_6#40 231 7fc3cba4796dc3cfb8d2f8ca3f1cb0dc;6335d5c0c8114149c4ec497fc358ac94 1313 a89a7899fe71b16903e04c881404e776;d20391e6bbb41f1c9a5aac981f65c2ca SAMEA2554055 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600540/ERR600540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600540/ERR600540_2.fastq.gz 4728038 WGS GPS_ZA_944-sc-1951091 RANDOM 156847236;162199074 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600540/ERR600540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600540/ERR600540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600540/13415_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600540/13415_6#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600540/ERR600540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600540/ERR600540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600540/13415_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600540/13415_6#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263376451;7731 ERS464556 ERX557369 GENOMIC 10631363 472803800 2014-09-16 SC_RUN_13415_6#40 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600540/13415_6#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600540/13415_6#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#40 ERR596384 SC_EXP_13353_7#12 259 21bdb559b1db35d912a2fad6a674e4a7;80b247c63811c5cb222105a6ec0ea5fa 1313 845f1830bbc38122b1c017c81ee94fb0;265b89d178f4b8c32c076111f7d920f9 SAMEA2521753 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596384/ERR596384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596384/ERR596384_2.fastq.gz 7535016 WGS 2012220326-sc-1947047 RANDOM 240850183;257243338 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596384/ERR596384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596384/ERR596384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596384/13353_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596384/13353_7#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596384/ERR596384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596384/ERR596384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596384/13353_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596384/13353_7#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 414942421;12151 ERS455293 ERX553347 GENOMIC 10552871 753501600 2014-09-09 SC_RUN_13353_7#12 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596384/13353_7#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596384/13353_7#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#12 ERR586364 SC_EXP_13154_2#71 246 d1bfb3c465f2a07bac63f6ef387fc465;5e363ac071c6c475a82baf24ce25f99f 1313 4d50f0eb952a44add7ee5918026cbea1;02c5ba2f7ca1a7cf692adbfe81c83475 SAMEA2467313 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586364/ERR586364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586364/ERR586364_2.fastq.gz 5521436 WGS PATH3019-sc-1926096 RANDOM 167224388;172296695 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586364/ERR586364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586364/ERR586364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586364/13154_2#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586364/13154_2#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586364/ERR586364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586364/ERR586364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586364/13154_2#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586364/13154_2#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278212508;9184 ERS437070 ERX544372 GENOMIC 10222484 552143600 2014-08-27 SC_RUN_13154_2#71 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586364/13154_2#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586364/13154_2#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_2#71 ERR563741 SC_EXP_12754_1#82 223 fdf193cae8092d33bb8f5e301ed4d234;d585af2cd58a994105d74fa7f0ec1859 1313 3961b226f3e3fa0de6def54113e3672f;9d2e48a4bc2ee5c1b179b447bf9ed643 SAMEA2383007 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563741/ERR563741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563741/ERR563741_2.fastq.gz 4283950 WGS 2082239_II-sc-1870256 RANDOM 143554691;149374026 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563741/ERR563741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563741/ERR563741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563741/12754_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563741/12754_1#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563741/ERR563741_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563741/ERR563741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563741/12754_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563741/12754_1#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 241774012;7061 ERS409332 ERX522766 GENOMIC 9918492 428395000 2014-07-16 SC_RUN_12754_1#82 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563741/12754_1#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563741/12754_1#82.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#82 ERR559315 SC_EXP_12718_4#49 233 755b53162ecf41c8782bf3619f3a5ddb;3ef0bf68ba740d7bd44fef0113797a57 1313 77eee5ef25b0e98163dfa4a4406cec51;6fd6d46d0c182ad705f94eec122738e1 SAMEA2382784 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559315/ERR559315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559315/ERR559315_2.fastq.gz 5183652 WGS 2012019_II-sc-1870031 RANDOM 161778384;168717134 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559315/ERR559315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559315/ERR559315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559315/12718_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559315/12718_4#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559315/ERR559315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559315/ERR559315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559315/12718_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559315/12718_4#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271225359;8635 ERS409109 ERX518351 GENOMIC 9918274 518365200 2014-07-10 SC_RUN_12718_4#49 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559315/12718_4#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559315/12718_4#49.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#49 ERR506027 SC_EXP_12299_1#46 227 d4b1246cc097665e50ca3d8ddfe47fbd;ec3d921430b72bae924ff20d9702484c 1313 143ed9dafab668b6c356ec275e8d85dc;17ba7515b3fe3e12c1559f2db2f90f05 SAMEA2336158 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506027/ERR506027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506027/ERR506027_2.fastq.gz 5316554 WGS 2010205309-sc-1811089 RANDOM 176240093;181528045 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506027/ERR506027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506027/ERR506027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506027/12299_1#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506027/12299_1#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506027/ERR506027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506027/ERR506027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506027/12299_1#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506027/12299_1#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294963318;8675 ERS394352 ERX471384 GENOMIC 9446538 531655400 2014-05-19 SC_RUN_12299_1#46 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506027/12299_1#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506027/12299_1#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#46 ERR505712 SC_EXP_12291_3#85 215 f47d191a0368fa013e0e5e8ced2269b1;b2f423d8c43d2751b6bd2155f7211499 1313 9d99cac9893daf189366f7d7ea063e9d;109dc0101c0409c3826cb7fd6c9e4a02 SAMEA2335927 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505712/ERR505712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505712/ERR505712_2.fastq.gz 4369976 WGS PATH3485-sc-1810854 RANDOM 136557025;143532450 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505712/ERR505712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505712/ERR505712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505712/12291_3#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505712/12291_3#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505712/ERR505712_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505712/ERR505712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505712/12291_3#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505712/12291_3#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 228172568;7146 ERS394121 ERX471069 GENOMIC 9439864 436997600 2014-05-19 SC_RUN_12291_3#85 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505712/12291_3#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505712/12291_3#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#85 ERR461911 SC_EXP_11893_1#88 234 53f04d281fa35679f5443c23d1bf661a;38d819db1b1c85e39d8dde221e02983a 1313 b6e45f36ed6d03baa6e0e9fa93cc982b;1bfecd609fdeca7bed1b30c41cfaf87d SAMEA2238847 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461911/ERR461911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461911/ERR461911_2.fastq.gz 4265722 WGS 2104296-sc-2013-11-05T12:03:24Z-1750211 RANDOM 144186853;149819746 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461911/ERR461911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461911/ERR461911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461911/11893_1#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461911/11893_1#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461911/ERR461911_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461911/ERR461911_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461911/11893_1#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461911/11893_1#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 242139860;6888 ERS367659 ERX428252 GENOMIC 9028218 426572200 2014-03-18 SC_RUN_11893_1#88 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461911/11893_1#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461911/11893_1#88.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR2305516 SC_EXP_22984_8#54 349 328da37bd823ef3373d38c558705b2c5;caf65bd59c01af3bd70936fee82fa225 1313 4f18b8d3abf43f18dd06aa0c21e58cde;7f62a8734d1c3f4901d99590160090e4 SAMEA104035024 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305516/ERR2305516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305516/ERR2305516_2.fastq.gz 2078346 WGS 033f5750-13c4-11e7-942b-3c4a9275d6c8 RANDOM 59807719;77665183 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305516/ERR2305516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305516/ERR2305516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305516/22984_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305516/22984_8#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305516/ERR2305516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305516/ERR2305516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305516/22984_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305516/22984_8#54.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100644138;3490 ERS1698917 ERX2356826 GENOMIC DN483712O:F7 313830246 2018-02-16 SC_RUN_22984_8#54 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305516/22984_8#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305516/22984_8#54.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808993 ERR461717 SC_EXP_11861_4#73 224 fa5fe749ae1ca230fa1647308ec5df0d;17423974ee10ac82e7a05a266a0219ff 1313 d371c2af651c9a1666f306cb857469e3;85f63ba2a19da7e7a7d4b21a9bd6dd18 SAMEA2239019 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461717/ERR461717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461717/ERR461717_2.fastq.gz 5162178 WGS 990095-sc-2013-11-05T12:06:35Z-1750386 RANDOM 166564659;175794385 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461717/ERR461717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461717/ERR461717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461717/11861_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461717/11861_4#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461717/ERR461717_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461717/ERR461717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461717/11861_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461717/11861_4#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 279532458;8238 ERS367831 ERX428058 GENOMIC 9016362 516217800 2014-03-18 SC_RUN_11861_4#73 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461717/11861_4#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461717/11861_4#73.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR2091283 SC_EXP_22841_4#174 440 04ef004aa675d91a7838467d1440340a;82827ebc3b317960cc86821d43f96c2c 1313 78b71c2afee29ec55272bbcd3513c6ff;04d2a689e2e8f6664b93923eb482bb3c SAMEA104035481 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091283/ERR2091283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091283/ERR2091283_2.fastq.gz 852912 WGS a243b140-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 19279967;20789299 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091283/ERR2091283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091283/ERR2091283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091283/22841_4#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091283/22841_4#174.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091283/ERR2091283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091283/ERR2091283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091283/22841_4#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091283/22841_4#174.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 26914200;1437 ERS1699374 ERX2148077 GENOMIC DN477153Q:H10 106614000 2017-08-08 SC_RUN_22841_4#174 109 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091283/22841_4#174.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091283/22841_4#174.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#174 ERR2305403 SC_EXP_22709_8#316 434 fa3364114e83427a331736d6b17ace01;15106dec9c59b3a53ac7238d74f17945 1313 23ad316fb7bead41696604ce69a343b9;071785b184f59336481b873862afe606 SAMEA104034530 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305403/ERR2305403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305403/ERR2305403_2.fastq.gz 2525826 WGS deb90f70-13c3-11e7-942b-3c4a9275d6c8 RANDOM 62841500;89196887 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305403/ERR2305403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305403/ERR2305403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305403/22709_8#316.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305403/22709_8#316.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305403/ERR2305403_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305403/ERR2305403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305403/22709_8#316.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305403/22709_8#316.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 112233634;4235 ERS1698423 ERX2356713 GENOMIC DN477148T:D5 381399726 2018-02-16 SC_RUN_22709_8#316 98 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305403/22709_8#316.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305403/22709_8#316.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808494 ERR2091183 SC_EXP_22841_4#74 394 b0b9d3b8736dc1d21f052a6b473ca6ef;361ee5422d31f88e3b4c07739fde3e86 1313 e3e1e49b7acdd75e9202b92bb707b312;1de608885fe4fc9f02d17f2f726b8afc SAMEA104035380 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091183/ERR2091183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091183/ERR2091183_2.fastq.gz 2422256 WGS 99e49870-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49167820;51201053 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091183/ERR2091183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091183/ERR2091183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091183/22841_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091183/22841_4#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091183/ERR2091183_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091183/ERR2091183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091183/22841_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091183/22841_4#74.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70953150;4024 ERS1699273 ERX2147977 GENOMIC DN477152P:B10 302782000 2017-08-08 SC_RUN_22841_4#74 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091183/22841_4#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091183/22841_4#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#74 ERR2091144 SC_EXP_22841_4#35 430 cdc64ed0f545fb5f8a1b4ad2cdd424c0;8d9acd6e00a299184e4ee2d1e66af26e 1313 24df0b6bc661b96b511f8eaf5df1662a;d6483f4be48454dfeef562f8b0617de2 SAMEA104035341 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091144/ERR2091144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091144/ERR2091144_2.fastq.gz 2470330 WGS 98517550-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49444212;52620712 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091144/ERR2091144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091144/ERR2091144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091144/22841_4#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091144/22841_4#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091144/ERR2091144_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091144/ERR2091144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091144/22841_4#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091144/22841_4#35.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71626484;4137 ERS1699234 ERX2147938 GENOMIC DN477152P:C5 308791250 2017-08-08 SC_RUN_22841_4#35 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091144/22841_4#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091144/22841_4#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#35 ERR2089786 SC_EXP_22027_1#166 432 520a55e98f774d3e53144be65f2c4c6f;d261cd59e43fd872a18559c40b60ad04 1313 fe8299f24cba188481b4c5e1a110d1a0;e3a7fd2a01fb50e59bcda4658f219a08 SAMEA104155142 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089786/ERR2089786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089786/ERR2089786_2.fastq.gz 2543312 WGS 9b311390-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48656482;52384694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089786/ERR2089786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089786/ERR2089786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089786/22027_1#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089786/22027_1#166.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089786/ERR2089786_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089786/ERR2089786_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089786/22027_1#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089786/22027_1#166.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71866583;4207 ERS1814160 ERX2146580 GENOMIC DN477278F:F10 317914000 2017-08-08 SC_RUN_22027_1#166 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089786/22027_1#166.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089786/22027_1#166.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#166 ERR2089730 SC_EXP_22027_1#110 431 047409e5e8c612f1120beeef788906ea;ba56f2f04d6f1447f5fec678174c0c45 1313 600d2e4dbc2a5aca53aaec2abc9deac2;695f71b6c5204ca55a2b2449ec7dbade SAMEA104155085 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089730/ERR2089730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089730/ERR2089730_2.fastq.gz 2773164 WGS 91b03710-c37a-11e6-b158-3c4a9275d6c8 RANDOM 50332411;53655541 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089730/ERR2089730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089730/ERR2089730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089730/22027_1#110.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089730/22027_1#110.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089730/ERR2089730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089730/ERR2089730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089730/22027_1#110.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089730/22027_1#110.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74225756;4638 ERS1814103 ERX2146524 GENOMIC DN477278F:F3 346645500 2017-08-08 SC_RUN_22027_1#110 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089730/22027_1#110.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089730/22027_1#110.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#110 ERR2090756 SC_EXP_22841_2#25 372 047da05d395bdfc954fa28d0b6912942;d2bcaebd4c65421eb888bccf36410955 1313 0463b515096b865dd9d2d7ba5332d1ae;7c64601aa195343815bdbccdf0a92eed SAMEA104035602 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090756/ERR2090756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090756/ERR2090756_2.fastq.gz 2483278 WGS b0689a60-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 54259308;56285407 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090756/ERR2090756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090756/ERR2090756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090756/22841_2#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090756/22841_2#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090756/ERR2090756_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090756/ERR2090756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090756/22841_2#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090756/22841_2#25.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78194729;4166 ERS1699495 ERX2147550 GENOMIC DN483653U:A4 310409750 2017-08-08 SC_RUN_22841_2#25 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090756/22841_2#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090756/22841_2#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#25 ERR2089701 SC_EXP_22027_1#81 438 c0f566eb1e7191170875a0175ab65682;8dad6a105e69252688c86c963820eda2 1313 0fe365c4942f807dc3b099b91e2dd1c6;afc3d2ba100bdbf3221b86471900aa5c SAMEA104154967 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089701/ERR2089701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089701/ERR2089701_2.fastq.gz 3562342 WGS 86b16d20-c37a-11e6-b158-3c4a9275d6c8 RANDOM 66514513;68634209 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089701/ERR2089701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089701/ERR2089701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089701/22027_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089701/22027_1#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089701/ERR2089701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089701/ERR2089701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089701/22027_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089701/22027_1#81.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 95401827;5799 ERS1813985 ERX2146495 GENOMIC DN477277E:A11 445292750 2017-08-08 SC_RUN_22027_1#81 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089701/22027_1#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089701/22027_1#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#81 ERR1947651 SC_EXP_21946_6#131 445 e9cca8ed85e6e28a0c220d0f4daf358d;1e967646040bb720249423f775165c99 1313 5850a624997b02b815eee3f8166a5e3a;0f614550effaa66287c9cb3b0fab78b1 SAMEA17695918 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947651/ERR1947651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947651/ERR1947651_2.fastq.gz 2271704 WGS 3f56cb80-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58422171;81529703 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947651/ERR1947651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947651/ERR1947651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947651/21946_6#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947651/21946_6#131.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947651/ERR1947651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947651/ERR1947651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947651/21946_6#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947651/21946_6#131.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102234006;3852 ERS1461709 ERX2013438 GENOMIC 18471500 343027304 2017-04-25 SC_RUN_21946_6#131 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947651/21946_6#131.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947651/21946_6#131.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1430850 SC_EXP_19183_3#52 467 7c812c89ac7e3d74c22f9b19c5c3868d;99f269064d1506dfa0b8de87d1652928 1313 8657c65fbc548b86c066bf20404773c5;3fd84bbdbfd366a5d1f4cf1f9fca4010 SAMEA3447978 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1430850/ERR1430850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1430850/ERR1430850_2.fastq.gz 2044026 WGS GPS_GM_2240-sc-2296856 RANDOM 43907522;42798418 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1430850/ERR1430850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1430850/ERR1430850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430850/19183_3#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430850/19183_3#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1430850/ERR1430850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1430850/ERR1430850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430850/19183_3#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430850/19183_3#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62096759;3407 ERS745552 ERX1501228 GENOMIC 15923129 255503250 2016-06-01 SC_RUN_19183_3#52 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430850/19183_3#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430850/19183_3#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#52 ERR1947409 SC_EXP_21903_8#255 416 f34f66d59a74e4697dc17c24ef45625a;d430d654a61db9160bf37b4e98a835ea 1313 2eb493281c02a825f9fe4ba0e53cb10a;b8ac0bab5f0a89d51745cb55891bd74d SAMEA4561437 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947409/ERR1947409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947409/ERR1947409_2.fastq.gz 1677504 WGS 2709f070-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 42119748;60809273 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947409/ERR1947409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947409/ERR1947409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947409/21903_8#255.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947409/21903_8#255.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947409/ERR1947409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947409/ERR1947409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947409/21903_8#255.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947409/21903_8#255.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 75603329;2914 ERS1460616 ERX2013196 GENOMIC 18453150 253303104 2017-04-25 SC_RUN_21903_8#255 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947409/21903_8#255.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947409/21903_8#255.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1422535 SC_EXP_19084_8#22 435 32cb33bf641f15a01f0cc4ea686d5969;ab8895a83ec945224d76d9b41b537145 1313 51f9fc0e68ee0deb2021b2ca4375331a;7038dba22e34f76943010a3bbe8bd2bc SAMEA3714359 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422535/ERR1422535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422535/ERR1422535_2.fastq.gz 2594204 WGS 4d8d7a10-41bd-11e5-998e-3c4a9275d6c6 RANDOM 62679641;62655514 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422535/ERR1422535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422535/ERR1422535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422535/19084_8#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422535/19084_8#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422535/ERR1422535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422535/ERR1422535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422535/19084_8#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422535/19084_8#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90580391;4220 ERS1021508 ERX1493117 GENOMIC 15758439 324275500 2016-05-24 SC_RUN_19084_8#22 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422535/19084_8#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422535/19084_8#22.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#22 ERR1422687 SC_EXP_19084_8#174 440 f7e639b3c3d9d70030c94226907140ee;20e5df0463acd49d792de6e2a9b26f0c 1313 4ac141b2b5c79ee4728db4d072b78354;3796b2f93b392811872ba5c2b4287a95 SAMEA3714511 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422687/ERR1422687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422687/ERR1422687_2.fastq.gz 3156226 WGS 563841e0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 71674422;72248898 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422687/ERR1422687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422687/ERR1422687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422687/19084_8#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422687/19084_8#174.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422687/ERR1422687_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422687/ERR1422687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422687/19084_8#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422687/19084_8#174.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 104720260;5289 ERS1021660 ERX1493269 GENOMIC 15758528 394528250 2016-05-24 SC_RUN_19084_8#174 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422687/19084_8#174.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422687/19084_8#174.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#174 ERR1288844 SC_EXP_18456_1#35 459 610bc85d78fec11522a12a968b00086b;5169250578d3cca4019751ea4d40bd30 1313 7f5a2bd7f896ae5bf1c991a8df03d24b;ab607bea7fd3c74d18e4d8044e320708 SAMEA3389238 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288844/ERR1288844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288844/ERR1288844_2.fastq.gz 2276314 WGS GPS_MW_150041-sc-2295711 RANDOM 53186336;49303243 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288844/ERR1288844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288844/ERR1288844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288844/18456_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288844/18456_1#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288844/ERR1288844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288844/ERR1288844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288844/18456_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288844/18456_1#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72698652;3823 ERS725341 ERX1360450 GENOMIC 14970308 284539250 2016-02-23 SC_RUN_18456_1#35 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288844/18456_1#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288844/18456_1#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#35 ERR1202230 SC_EXP_17870_7#160 463 89ca24d9752ca59344eaeadd89cb98d5;c6f6d2c62b04f7b00f492ae194120b4f 1313 b2175e9784cb0d531ba51664ca90e480;21270ed2d10955f542a2c930c550fa5b SAMEA3389743 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202230/ERR1202230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202230/ERR1202230_2.fastq.gz 2382354 WGS GPS_MW_1205-sc-2295987 RANDOM 47414921;49902334 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202230/ERR1202230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202230/ERR1202230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202230/17870_7#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202230/17870_7#160.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202230/ERR1202230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202230/ERR1202230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202230/17870_7#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202230/17870_7#160.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73212358;3963 ERS725846 ERX1274472 GENOMIC 14978379 297794250 2016-01-12 SC_RUN_17870_7#160 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202230/17870_7#160.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202230/17870_7#160.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#160 ERR997648 SC_EXP_16399_7#27 213 b55db312a04609074cf889bb6067d1c7;882c49cc2995e2ee5672b660cf8deba9 1313 8977c5efb48e5084e24b5c5c35a2fd90;7319c094d832368073e834092fb01b31 SAMEA3309692 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997648/ERR997648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997648/ERR997648_2.fastq.gz 5342272 WGS GPS_GM_1710-sc-2206495 RANDOM 185298688;192392254 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997648/ERR997648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997648/ERR997648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997648/16399_7#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997648/16399_7#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997648/ERR997648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997648/ERR997648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997648/16399_7#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997648/16399_7#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 308486353;8446 ERS686154 ERX1076684 GENOMIC 13843376 534227200 2015-09-04 SC_RUN_16399_7#27 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997648/16399_7#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997648/16399_7#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#27 ERR1065943 SC_EXP_17175_4#24 467 76c706ff218d3734fbf523f4515385b3;fa0764fec0fb14160917c54f3b70c892 1313 2e6bf49ac50f8925382ae1e5be7aab7d;109188a0149fef076602e6cc439b3899 SAMEA3353398 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065943/ERR1065943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065943/ERR1065943_2.fastq.gz 5212638 WGS GPS_ZA_carriage_SP1449-sc-2277998 RANDOM 92837010;94550053 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065943/ERR1065943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065943/ERR1065943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065943/17175_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065943/17175_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065943/ERR1065943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065943/ERR1065943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065943/17175_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065943/17175_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 144105064;8636 ERS707753 ERX1146093 GENOMIC 14436383 651579750 2015-10-13 SC_RUN_17175_4#24 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065943/17175_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065943/17175_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#24 ERR997665 SC_EXP_16399_7#44 213 2316fb59c45fe6580792d556243ba391;b723a7a2d847c4304a9d68706836780c 1313 ca9381603ab5ec7c254bb332a555262f;2b9e9febd29e21ac2443d4c4a8d33b0f SAMEA3309716 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997665/ERR997665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997665/ERR997665_2.fastq.gz 5292424 WGS GPS_GM_1734-sc-2206530 RANDOM 184584450;191484247 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997665/ERR997665_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997665/ERR997665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997665/16399_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997665/16399_7#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997665/ERR997665_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997665/ERR997665_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997665/16399_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997665/16399_7#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 308448260;8356 ERS686178 ERX1076701 GENOMIC 13843390 529242400 2015-09-04 SC_RUN_16399_7#44 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997665/16399_7#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997665/16399_7#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#44 ERR925329 SC_EXP_15995_2#119 219 c7fca086147113fd56e24e0ac657fa8d;201dcf309892f574cb334e1ad908b92a 1313 e9d78d3ad3a3f864f2928ea7b9b0b54d;35b20b0b4f3640a20948f7fcd182828b SAMEA3209049 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925329/ERR925329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925329/ERR925329_2.fastq.gz 2033494 WGS GPS_ZA_carriage_SP1120-sc-2205187 RANDOM 63667842;66024146 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925329/ERR925329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925329/ERR925329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925329/15995_2#119.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925329/15995_2#119.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925329/ERR925329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925329/ERR925329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925329/15995_2#119.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925329/15995_2#119.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105557242;3405 ERS640151 ERX1004604 GENOMIC 13301285 203349400 2015-06-23 SC_RUN_15995_2#119 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925329/15995_2#119.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925329/15995_2#119.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#119 ERR900673 SC_EXP_15731_8#28 230 a9c5d2da91808882689a2d1d19b85dbc;efaf31a31677acd2d4cc579e5a0e355b 1313 4f9d1b6f34d8ad1f3c3d41d8ff3b8bcb;454355dbe0cab232f2ebecde83e9205d SAMEA3206653 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900673/ERR900673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900673/ERR900673_2.fastq.gz 4816908 WGS GPS_ZA_carriage_SP40-sc-2191586 RANDOM 145290206;151303387 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900673/ERR900673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900673/ERR900673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900673/15731_8#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900673/15731_8#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900673/ERR900673_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900673/ERR900673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900673/15731_8#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900673/15731_8#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238810681;7757 ERS638663 ERX980062 GENOMIC 13208913 481690800 2015-05-26 SC_RUN_15731_8#28 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900673/15731_8#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900673/15731_8#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#28 ERR870211 SC_EXP_15531_6#19 212 09c8062b5650d97413eaabf3596507da;18ed5f81050fb03572964eca05f17964 1313 4e2f238ac7972bdcc30f27d89d28659b;61e233b66cbf8eeeb5ccdb7164591fd7 SAMEA3172961 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870211/ERR870211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870211/ERR870211_2.fastq.gz 4046498 WGS GPS_GM_1105-sc-2190520 RANDOM 154627790;146291584 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870211/ERR870211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870211/ERR870211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870211/15531_6#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870211/15531_6#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870211/ERR870211_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870211/ERR870211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870211/15531_6#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870211/15531_6#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248344499;6556 ERS627204 ERX949812 GENOMIC 12870042 404649800 2015-05-06 SC_RUN_15531_6#19 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870211/15531_6#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870211/15531_6#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#19 ERR913318 SC_EXP_15873_4#3 216 81974f3d2b5da3bbf2c6a0662c8f5b12;dc915b4ff1f2167509f4309bb4c4ee7a 1313 4b036d50a5556e693432d1491b2a9cb3;f9223e5845d222e6824738f05db1f02a SAMEA3233284 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913318/ERR913318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913318/ERR913318_2.fastq.gz 5768010 WGS GPS_GM_1408-sc-2206041 RANDOM 178210655;186144393 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913318/ERR913318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913318/ERR913318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913318/15873_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913318/15873_4#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913318/ERR913318_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913318/ERR913318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913318/15873_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913318/15873_4#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294585018;9038 ERS654477 ERX992442 GENOMIC 13308262 576801000 2015-06-17 SC_RUN_15873_4#3 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913318/15873_4#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913318/15873_4#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_4#3 ERR862404 SC_EXP_15378_3#51 191 217bf5c71de57b85ce621f07b2981482;a3bee21acb8d260df18f86328d55f1a8 1313 35f817659e4ebbe49af1d49a2a6a892e;dd39b17c609e7b5fd33d90608db77ba3 SAMEA3171086 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862404/ERR862404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862404/ERR862404_2.fastq.gz 3918854 WGS GPS_MW_1742-sc-2139648 RANDOM 138749462;143370583 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862404/ERR862404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862404/ERR862404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862404/15378_3#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862404/15378_3#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862404/ERR862404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862404/ERR862404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862404/15378_3#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862404/15378_3#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230813583;6303 ERS625477 ERX942054 GENOMIC 12815416 391885400 2015-04-21 SC_RUN_15378_3#51 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862404/15378_3#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862404/15378_3#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#51 ERR774521 SC_EXP_14936_4#48 220 3a6abf4873577321f8e867f9b0fb3ff1;2cf216252007bfea9be63db72cbe0e01 1313 2406db6f611dad040f86184011988242;8937ed3263f1d98bc7915c7efe306ab4 SAMEA2814353 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774521/ERR774521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774521/ERR774521_2.fastq.gz 5072802 WGS GPS_ZA_2565-sc-2138147 RANDOM 184515904;186406752 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774521/ERR774521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774521/ERR774521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774521/14936_4#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774521/14936_4#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774521/ERR774521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774521/ERR774521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774521/14936_4#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774521/14936_4#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 311195820;8247 ERS566721 ERX717400 GENOMIC 12348007 507280200 2015-03-03 SC_RUN_14936_4#48 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774521/14936_4#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774521/14936_4#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#48 ERR774626 SC_EXP_14936_5#62 211 aecaab71c0ea3b8afd85ba156b750ab6;7a20a7320b73ac8518c6c43039d05eb1 1313 273eb6ad009079441da0e863560ff5ee;d901ec0f3b83201d25667e1de3bcb7e0 SAMEA2783712 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774626/ERR774626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774626/ERR774626_2.fastq.gz 5046854 WGS GPS_MW_1332_R1-sc-2022207 RANDOM 185271124;187897635 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774626/ERR774626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774626/ERR774626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774626/14936_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774626/14936_5#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774626/ERR774626_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774626/ERR774626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774626/14936_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774626/14936_5#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 310301069;8101 ERS553457 ERX717505 GENOMIC 12403531 504685400 2015-03-03 SC_RUN_14936_5#62 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774626/14936_5#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774626/14936_5#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#62 ERR774615 SC_EXP_14936_5#51 211 d8f0a3fa20232180395cec0a1f11cfd9;20cbaafc46670d70b2b5f2348217a478 1313 5d768156decd99c88c0fb8c9832cc11b;e16373506c883d48365f09513078d777 SAMEA2783691 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774615/ERR774615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774615/ERR774615_2.fastq.gz 4584140 WGS GPS_MW_774_R1-sc-2022186 RANDOM 168289177;168609239 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774615/ERR774615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774615/ERR774615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774615/14936_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774615/14936_5#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774615/ERR774615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774615/ERR774615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774615/14936_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774615/14936_5#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278600549;7291 ERS553436 ERX717494 GENOMIC 12403494 458414000 2015-03-03 SC_RUN_14936_5#51 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774615/14936_5#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774615/14936_5#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#51 ERR774178 SC_EXP_14913_5#84 225 4a4bd52a3ebb33ecccb9bbdcbdad6241;6ab1e5bea1a5e7edfc46db996a3ba8f7 1313 02e8dd94c5811375807b8e744c8ea50b;65adc18560e49035854d5c723b84700a SAMEA2814484 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774178/ERR774178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774178/ERR774178_2.fastq.gz 4838564 WGS GPS_ZA_2696-sc-2138279 RANDOM 159356999;166543703 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774178/ERR774178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774178/ERR774178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774178/14913_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774178/14913_5#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774178/ERR774178_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774178/ERR774178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774178/14913_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774178/14913_5#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266665466;7801 ERS566852 ERX717057 GENOMIC 12403413 483856400 2015-03-03 SC_RUN_14913_5#84 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774178/14913_5#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774178/14913_5#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#84 ERR559453 SC_EXP_12718_5#92 231 a14e386fd3b28f367faf826ff14bc2f7;406ab3d28e1fec9493d34b8c1ad85ad7 1313 8612320fbc26a1a767e0f5bc9d786b63;ffca31f1a7516eca506b5771dce6ea43 SAMEA2382922 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559453/ERR559453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559453/ERR559453_2.fastq.gz 4907832 WGS 2071802_II-sc-1870170 RANDOM 151930750;157175196 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559453/ERR559453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559453/ERR559453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559453/12718_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559453/12718_5#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559453/ERR559453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559453/ERR559453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559453/12718_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559453/12718_5#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 254615979;8121 ERS409247 ERX518489 GENOMIC 9918412 490783200 2014-07-10 SC_RUN_12718_5#92 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559453/12718_5#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559453/12718_5#92.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#92 ERR501603 SC_EXP_12290_3#63 200 ed62759a7191ffbfcd0a014d807a99df;4177037dc117f5378c5c203682247eca 1313 dccf61078bfec9949df6f2718f0b4dc3;4572c23c2bb2b1ebfb4a2059c40a63b6 SAMEA2341324 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501603/ERR501603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501603/ERR501603_2.fastq.gz 3820340 WGS 428-sc-1811397 RANDOM 116195708;121980332 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501603/ERR501603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501603/ERR501603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501603/12290_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501603/12290_3#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501603/ERR501603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501603/ERR501603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501603/12290_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501603/12290_3#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 196069093;6161 ERS398995 ERX466960 GENOMIC 9467259 382034000 2014-05-12 SC_RUN_12290_3#63 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501603/12290_3#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501603/12290_3#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#63 ERR461088 SC_EXP_11860_5#85 210 dcc2ed96804a95cfb1d10048b03d9bb8;076be7fbe82aec3fa6339c91e7875d7a 1313 bd509d0cd2fe89ed124604dd592d7187;1fe233fc3bfdb7e3d0b6149f28f6b327 SAMEA2238455 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461088/ERR461088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461088/ERR461088_2.fastq.gz 2893980 WGS 2071802-sc-2013-11-05T11:56:46Z-1749814 RANDOM 77036124;81661785 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461088/ERR461088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461088/ERR461088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461088/11860_5#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461088/11860_5#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461088/ERR461088_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461088/ERR461088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461088/11860_5#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461088/11860_5#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 125438085;4811 ERS367267 ERX427429 GENOMIC 9014541 289398000 2014-03-18 SC_RUN_11860_5#85 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461088/11860_5#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461088/11860_5#85.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#85 ERR338170 SC_EXP_10071_4#6 215 02bc6972bbf0ccadb996d99e33fed06e 1313 273f5910f96d3f4fbf081dbbb12b4988;cbcee55343b0be9c6a517dd76c935b07 SAMEA2059873 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338170/ERR338170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338170/ERR338170_2.fastq.gz 1463845 WGS PBCN0284-sc-2013-03-27T13:19:14Z-1603629 RANDOM 95078451;98674223 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338170/ERR338170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338170/ERR338170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338170/10071_4#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338170/ERR338170_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338170/ERR338170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338170/10071_4#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 267921219 ERS225764 ERX311075 GENOMIC 7400540 292769000 2013-09-03 SC_RUN_10071_4#6 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338170/10071_4#6.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#6 ERR129110 SC_EXP_7622_3#86 221 14a962c6666c81e23393edf4a1993750 1313 a23813c51c9053e58bad1a8365701146;a384253991cd0d8ef9b3539f7332f75a SAMEA1463073 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129110/ERR129110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129110/ERR129110_2.fastq.gz 3023949 WGS GL3031-sc-2011-11-08T10:07:25Z-1298369 RANDOM 325851202;328349797 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129110/ERR129110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129110/ERR129110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129110/7622_3#86.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129110/ERR129110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129110/ERR129110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129110/7622_3#86.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 632339502 ERS070001 ERX105251 GENOMIC 4336519 604789800 2012-05-28 SC_RUN_7622_3#86 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129110/7622_3#86.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR064148 SC_EXP_6949_1#10 259 3ccf50883c6d8fec8f30ea163fa98e96 1313 f7e04319a7f72fa2c59f832b36463065;9f4bcd667e443ab9fce7d4f10ab7c1c1 SAMEA1028733 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064148/ERR064148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064148/ERR064148_2.fastq.gz 4242204 WGS SMRU2410-sc-2011-01-27-1062623 RANDOM 211027673;214621611 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064148/ERR064148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064148/ERR064148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064148/6949_1#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064148/ERR064148_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064148/ERR064148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064148/6949_1#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 547376808 ERS021919 ERX042121 GENOMIC 3660686 636330600 2012-03-19 SC_RUN_6949_1#10 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064148/6949_1#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054497 SC_EXP_6753_4#13 212 5fa91b1f0d47d8af2ca54f6b21df0957 1313 e1b4fe1c70c940d68c2945e72e54016b;43010ad1fac4bb8926ac9a421cb151d6 SAMEA1025635 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054497/ERR054497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054497/ERR054497_2.fastq.gz 4286991 WGS SMRU1549-sc-2011-01-27-1061762 RANDOM 285779571;301571079 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054497/ERR054497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054497/ERR054497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054497/6753_4#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054497/ERR054497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054497/ERR054497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054497/6753_4#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 737996356 ERS021059 ERX031543 GENOMIC 3414235 643048650 2011-11-15 SC_RUN_6753_4#13 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054497/6753_4#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR064037 SC_EXP_6925_8#12 228 f72f630b66140a5a5203dd7bb84389e6 1313 ae481814fa54cddf3d4726d3d9e7462f;762a0741e8a6944e63c0b7e4177fb72c SAMEA1029152 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064037/ERR064037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064037/ERR064037_2.fastq.gz 3224612 WGS SMRU2532-sc-2011-01-27-1062745 RANDOM 201037935;193840331 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064037/ERR064037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064037/ERR064037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064037/6925_8#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064037/ERR064037_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064037/ERR064037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064037/6925_8#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 494986225 ERS022042 ERX042010 GENOMIC 3686201 483691800 2012-03-19 SC_RUN_6925_8#12 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064037/6925_8#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR051580 SC_EXP_6731_3#2 214 5d56cbfac2a209d3f09c3e5d30e43224 1313 65070b24b4c7f9a4758603b5170eabaa;a8278cf4c3abafe25e5ab5ddab36500c SAMEA1024853 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051580/ERR051580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051580/ERR051580_2.fastq.gz 4051161 WGS SMRU1034-sc-2011-01-27-1061247 RANDOM 237151912;248189368 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051580/ERR051580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051580/ERR051580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051580/6731_3#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051580/ERR051580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051580/ERR051580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051580/6731_3#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 603660221 ERS020544 ERX028628 GENOMIC 3246234 607674150 2011-11-02 SC_RUN_6731_3#2 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051580/6731_3#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR048144 SC_EXP_6631_5#11 201 26042c42ad8ae533504aacf0fe3bb538 1313 331a214d42a368c3095d2260660395d7;e5d76275dc49c20c5e714bc5118a70c6 SAMEA1023770 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048144/ERR048144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048144/ERR048144_2.fastq.gz 5478361 WGS SMRU467-sc-2011-01-27-1060656 RANDOM 309420303;312522876 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048144/ERR048144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048144/ERR048144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048144/6631_5#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048144/ERR048144_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048144/ERR048144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048144/6631_5#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 770045572 ERS019625 ERX025207 GENOMIC 3037786 821754150 2011-10-11 SC_RUN_6631_5#11 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048144/6631_5#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054392 SC_EXP_6736_8#3 242 fb6aeb146cd8295db78336597533f32c 1313 7e7b155743ab62328e65fa4fe57a22a7;620e7181668d253eb802f71214e03778 SAMEA1025531 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054392/ERR054392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054392/ERR054392_2.fastq.gz 5746356 WGS SMRU1299-sc-2011-01-27-1061512 RANDOM 322678962;344668460 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054392/ERR054392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054392/ERR054392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054392/6736_8#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054392/ERR054392_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054392/ERR054392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054392/6736_8#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 821020242 ERS020809 ERX031438 GENOMIC 3308146 861953400 2011-11-15 SC_RUN_6736_8#3 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054392/6736_8#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR056778 SC_EXP_6805_2#24 234 5a390b6d7761ec70bddf08a0cb155968 1313 e15393219199fdda57a33d8762989526;1ed4b66a83a9511d7d981c5b77f56101 SAMEA1025288 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056778/ERR056778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056778/ERR056778_2.fastq.gz 7255902 WGS SMRU1440-sc-2011-01-27-1061653 RANDOM 364729043;380212749 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056778/ERR056778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056778/ERR056778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056778/6805_2#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056778/ERR056778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056778/ERR056778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056778/6805_2#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 914417782 ERS020950 ERX034622 GENOMIC 3441198 1088385300 2011-11-29 SC_RUN_6805_2#24 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056778/6805_2#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR067785 SC_EXP_6972_2#18 231 eda0f4cb02cd72c0cc2b55b1c489c431 1313 45a410fb6f82b1665416b1f79ba0fbb3;1038438b3007282d9ecdc806b193dcb3 SAMEA1028844 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067785/ERR067785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067785/ERR067785_2.fastq.gz 4017159 WGS SMRU2562-sc-2011-01-27-1062775 RANDOM 248029370;258134353 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067785/ERR067785_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067785/ERR067785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067785/6972_2#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067785/ERR067785_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067785/ERR067785_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067785/6972_2#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 645788545 ERS022072 ERX045648 GENOMIC 3686233 602573850 2012-01-16 SC_RUN_6972_2#18 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067785/6972_2#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR084298 SC_EXP_7068_4#24 228 4f49d79824e75024ac068e43777a20c7 1313 012d6c59672d190993ab9cac214c57a7;9c5d61cdbf86d12ca42ff8d4f219f97e SAMEA1029353 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084298/ERR084298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084298/ERR084298_2.fastq.gz 4189073 WGS SMRU3144-sc-2011-01-27-1063357 RANDOM 277087194;278126794 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084298/ERR084298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084298/ERR084298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084298/7068_4#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084298/ERR084298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084298/ERR084298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084298/7068_4#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 695831715 ERS022654 ERX062064 GENOMIC 3910179 628360950 2012-02-07 SC_RUN_7068_4#24 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084298/7068_4#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR056877 SC_EXP_6805_7#3 233 f677cb557d28bded586c07e96d7d2eb3 1313 04b1f79bc5304b05561c8823b29d1a74;3596a0162f43668673daadba4ab5b688 SAMEA1026104 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056877/ERR056877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056877/ERR056877_2.fastq.gz 5267114 WGS SMRU1731-sc-2011-01-27-1061944 RANDOM 246267047;257310674 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056877/ERR056877_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056877/ERR056877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056877/6805_7#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056877/ERR056877_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056877/ERR056877_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056877/6805_7#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 628835979 ERS021241 ERX034721 GENOMIC 3481235 790067100 2012-03-22 SC_RUN_6805_7#3 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056877/6805_7#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056889 SC_EXP_6805_7#15 233 84089929f7fcc44427b464cdec455e86 1313 358a2f251ddb0a28644aa17a4a579794;11d423e9ac308c8018df25d6d1907a05 SAMEA1025765 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056889/ERR056889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056889/ERR056889_2.fastq.gz 4100103 WGS SMRU1744-sc-2011-01-27-1061957 RANDOM 197450520;205655851 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056889/ERR056889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056889/ERR056889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056889/6805_7#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056889/ERR056889_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056889/ERR056889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056889/6805_7#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 504546584 ERS021254 ERX034733 GENOMIC 3481247 615015450 2012-03-22 SC_RUN_6805_7#15 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056889/6805_7#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR052631 SC_EXP_6714_8#6 246 6e580c366ab53f160ce5dc22c90d61fc 1313 08517e97d36db990b44c1ea9e2690188;ce85235fad98df35ed6bb10b78ddefca SAMEA1023737 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052631/ERR052631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052631/ERR052631_2.fastq.gz 5733479 WGS SMRU558-sc-2011-01-27-1060747 RANDOM 306941065;322399075 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052631/ERR052631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052631/ERR052631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052631/6714_8#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052631/ERR052631_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052631/ERR052631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052631/6714_8#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 809863641 ERS019716 ERX029679 GENOMIC 3100036 860021850 2011-11-07 SC_RUN_6714_8#6 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052631/6714_8#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR047139 SC_EXP_6569_8#15 247 3608df5f7a02e2f1066c27531874c124 1313 530b6ac56e8e30a5994ddbc188481885;75732377a0015888a7e4a27493e24d32 SAMEA1026465 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047139/ERR047139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047139/ERR047139_2.fastq.gz 5206926 WGS UoS5089-sc-2011-03-11-1098952 RANDOM 316687149;340174885 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047139/ERR047139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047139/ERR047139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047139/6569_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047139/ERR047139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047139/ERR047139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047139/6569_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 847862130 ERS025142 ERX024201 GENOMIC 2744171 781038900 2011-09-27 SC_RUN_6569_8#15 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047139/6569_8#15.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_8#15 ERR046155 SC_EXP_6512_5#12 242 cd91bb092bd9e6182b7bd46e6cbdb86a 1313 2fcaaa73085e6d95620c54e91dd5c677;e8729c0dd45d11254e1553b19a955b9a SAMEA1026407 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046155/ERR046155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046155/ERR046155_2.fastq.gz 3725906 WGS UoS4039-sc-2011-02-14-1078384 RANDOM 199805393;198496380 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046155/ERR046155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046155/ERR046155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046155/6512_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046155/ERR046155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046155/ERR046155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046155/6512_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 508559145 ERS023330 ERX023217 GENOMIC 2735033 558885900 2011-09-20 SC_RUN_6512_5#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046155/6512_5#12.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_5#12 ERR2305477 SC_EXP_22984_8#15 350 a9279a269dc1232e1a3f1edef7d54d57;d5aaf6ffe2417d6ad466ca505b908fdb 1313 0e7cd1429d8e063838428a54f2dd49c6;a248105b84ce19dfb06f3766d04c1c77 SAMEA104034985 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305477/ERR2305477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305477/ERR2305477_2.fastq.gz 2540784 WGS 01f1efc0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 69185789;91903081 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305477/ERR2305477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305477/ERR2305477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305477/22984_8#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305477/22984_8#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305477/ERR2305477_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305477/ERR2305477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305477/22984_8#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305477/22984_8#15.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 117574492;4298 ERS1698878 ERX2356787 GENOMIC DN483712O:G2 383658384 2018-02-16 SC_RUN_22984_8#15 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305477/22984_8#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305477/22984_8#15.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808954 ERR2305523 SC_EXP_22984_8#61 344 7b161c3963d43daa4c2b798dd5e12a7a;13ec59d9c38f6d8620224eb43eab18ed 1313 bf9315651bdf99098a957a7947d814cd;466b3d89286011ba3b07fdd59e4a920e SAMEA104035031 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305523/ERR2305523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305523/ERR2305523_2.fastq.gz 2275402 WGS 037de6f0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 61815654;81714226 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305523/ERR2305523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305523/ERR2305523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305523/22984_8#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305523/22984_8#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305523/ERR2305523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305523/ERR2305523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305523/22984_8#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305523/22984_8#61.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104300010;3842 ERS1698924 ERX2356833 GENOMIC DN483712O:E8 343585702 2018-02-16 SC_RUN_22984_8#61 92 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305523/22984_8#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305523/22984_8#61.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809000 ERR2305247 SC_EXP_22695_3#206 406 0467a90899863b5522806dc90d6a8733;cb4be31d7385df2604e25f82e607f81d 1313 efcc1819cecf2bf3279e8123e9a59cce;56b26df2300226c73ed8b7faefcf3554 SAMEA104034890 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305247/ERR2305247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305247/ERR2305247_2.fastq.gz 2695432 WGS fadff060-13c3-11e7-942b-3c4a9275d6c8 RANDOM 71552369;94261956 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305247/ERR2305247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305247/ERR2305247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305247/22695_3#206.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305247/22695_3#206.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305247/ERR2305247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305247/ERR2305247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305247/22695_3#206.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305247/22695_3#206.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 120802498;4555 ERS1698783 ERX2356557 GENOMIC DN477146R:H2 407010232 2018-02-16 SC_RUN_22695_3#206 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305247/22695_3#206.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305247/22695_3#206.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808858 ERR2305186 SC_EXP_22695_3#145 429 537981fa2eb29c1ec3a7f1ce74de3afb;b5bab5ef44230b3c714d1bb57238f116 1313 f8775642966e96cc8d6fa426236409c6;c4c2f32514d7a09f8f69b0c0785fe3c0 SAMEA104034734 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305186/ERR2305186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305186/ERR2305186_2.fastq.gz 2172170 WGS ed71fb30-13c3-11e7-942b-3c4a9275d6c8 RANDOM 58099550;80388455 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305186/ERR2305186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305186/ERR2305186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305186/22695_3#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305186/22695_3#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305186/ERR2305186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305186/ERR2305186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305186/22695_3#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305186/22695_3#145.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100703955;3698 ERS1698627 ERX2356496 GENOMIC DN477141M:B7 327997670 2018-02-16 SC_RUN_22695_3#145 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305186/22695_3#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305186/22695_3#145.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808700 ERR2305147 SC_EXP_22695_3#106 418 a00a89d8a51dc01ffbd3af03f55afe11;74523e4d76ae324d69582d221658e880 1313 cbc4a263b0efffe6e49de0bb659c8c45;2300dd604930a7861f8d6b602aa80cbe SAMEA104034695 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305147/ERR2305147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305147/ERR2305147_2.fastq.gz 2236872 WGS ec27c7f0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61565395;81815029 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305147/ERR2305147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305147/ERR2305147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305147/22695_3#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305147/22695_3#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305147/ERR2305147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305147/ERR2305147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305147/22695_3#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305147/22695_3#106.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105051717;3809 ERS1698588 ERX2356457 GENOMIC DN477141M:C2 337767672 2018-02-16 SC_RUN_22695_3#106 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305147/22695_3#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305147/22695_3#106.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808661 ERR2305054 SC_EXP_22695_3#13 419 3cdf6ab068cc65286a1827b0c5662ca8;ae4c0a545ffd17b4cbd28f41429086c4 1313 91c6922acda8510e27438481b6575fa7;b3e744aa2848d20bbc2919c99b7c7783 SAMEA104034602 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305054/ERR2305054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305054/ERR2305054_2.fastq.gz 2752870 WGS e5381da0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 71875857;97410962 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305054/ERR2305054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305054/ERR2305054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305054/22695_3#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305054/22695_3#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305054/ERR2305054_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305054/ERR2305054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305054/22695_3#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305054/22695_3#13.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 124569035;4659 ERS1698495 ERX2356364 GENOMIC DN477140L:E2 415683370 2018-02-16 SC_RUN_22695_3#13 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305054/22695_3#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305054/22695_3#13.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808567 ERR2089529 SC_EXP_21999_8#84 445 3a419323c3290adc7fc84affef016e4f;3464b1f2252aea3906260689f6bd8d6c 1313 3a64327faf75bb87d03e5daa019b8053;f34d67c09d98fdc680c3669ee2384f9d SAMEA104154798 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089529/ERR2089529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089529/ERR2089529_2.fastq.gz 3214424 WGS 72b1a510-c37a-11e6-b158-3c4a9275d6c8 RANDOM 56299554;60132822 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089529/ERR2089529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089529/ERR2089529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089529/21999_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089529/21999_8#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089529/ERR2089529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089529/ERR2089529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089529/21999_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089529/21999_8#84.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80996661;5257 ERS1813816 ERX2146323 GENOMIC DN476959T:D11 401803000 2017-08-08 SC_RUN_21999_8#84 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089529/21999_8#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089529/21999_8#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#84 ERR1764049 SC_EXP_20957_7#124 422 92e212350094a3b0691b61fcfbdc3f11;9d858366b6451ce7755811bae50391f8 1313 7c6604163cbcbf2f09abfcffae46315f;992d447fb6ee0b60e5be3ca8a2bff962 SAMEA4392458 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/009/ERR1764049/ERR1764049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/009/ERR1764049/ERR1764049_2.fastq.gz 3067206 WGS f9f30830-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 62007018;69212555 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/009/ERR1764049/ERR1764049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/009/ERR1764049/ERR1764049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764049/20957_7#124.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764049/20957_7#124.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/009/ERR1764049/ERR1764049_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/009/ERR1764049/ERR1764049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764049/20957_7#124.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764049/20957_7#124.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93893544;5072 ERS1303907 ERX1829618 GENOMIC DN462612U:E4 383400750 2016-12-20 SC_RUN_20957_7#124 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764049/20957_7#124.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764049/20957_7#124.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#124 ERR1453657 SC_EXP_19341_3#9 456 de667eccb92fac5059a9aee6ad754d1d;691dfc59ef51e42c2052b547ca5939d6 1313 d74e41eb4a9654b24384d95c27c87d5f;0c307ec51ac152c159a3b1d41a97b643 SAMEA3713936 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453657/ERR1453657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453657/ERR1453657_2.fastq.gz 2437718 WGS 3927c440-41bd-11e5-998e-3c4a9275d6c6 RANDOM 50809836;56420232 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453657/ERR1453657_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453657/ERR1453657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453657/19341_3#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453657/19341_3#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453657/ERR1453657_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453657/ERR1453657_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453657/19341_3#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453657/19341_3#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77521604;4124 ERS1021085 ERX1524135 GENOMIC 16008415 304714750 2016-06-14 SC_RUN_19341_3#9 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453657/19341_3#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453657/19341_3#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#9 ERR2089509 SC_EXP_21999_8#64 435 c3c35fbdcc4c686e408f33b1ac3d5f29;c86f2838cef6519568845176b0c62a15 1313 0d8e164a814504f056cbc8b4b2e328cd;a6e7c50b92049cccf14d14cd5990736e SAMEA104154773 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089509/ERR2089509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089509/ERR2089509_2.fastq.gz 3146592 WGS 71c04030-c37a-11e6-b158-3c4a9275d6c8 RANDOM 55045952;56771024 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089509/ERR2089509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089509/ERR2089509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089509/21999_8#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089509/21999_8#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089509/ERR2089509_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089509/ERR2089509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089509/21999_8#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089509/21999_8#64.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77285012;5161 ERS1813791 ERX2146303 GENOMIC DN476959T:H8 393324000 2017-08-08 SC_RUN_21999_8#64 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089509/21999_8#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089509/21999_8#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#64 ERR1288871 SC_EXP_18456_1#62 459 b5f54d0e75027c7c69cd84a66077576b;34e00d885095eeb10d9764129220e0ed 1313 2d549679a8e1367bc1c8a5ed4d2ed1d1;b8176b66e5e960ae846e1b03768d3bed SAMEA3389292 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288871/ERR1288871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288871/ERR1288871_2.fastq.gz 2286132 WGS GPS_MW_151119-sc-2295765 RANDOM 55407775;51198885 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288871/ERR1288871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288871/ERR1288871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288871/18456_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288871/18456_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288871/ERR1288871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288871/ERR1288871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288871/18456_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288871/18456_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75138376;3842 ERS725395 ERX1360477 GENOMIC 14970347 285766500 2016-02-23 SC_RUN_18456_1#62 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288871/18456_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288871/18456_1#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#62 ERR1453723 SC_EXP_19341_3#75 417 0cec571b480be969d9709aa83a9ecbcb;a10f6ad2334a0a0bb6dbb2b9e50511e0 1313 0b35d2e6b2b4a77989bf3ffad68301f8;952566de1198d75bc566afa4c72e2b62 SAMEA3714040 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453723/ERR1453723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453723/ERR1453723_2.fastq.gz 2294466 WGS 40d7d860-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 46269080;49654083 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453723/ERR1453723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453723/ERR1453723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453723/19341_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453723/19341_3#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/003/ERR1453723/ERR1453723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/003/ERR1453723/ERR1453723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453723/19341_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453723/19341_3#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68669213;3876 ERS1021189 ERX1524201 GENOMIC 16008447 286808250 2016-06-14 SC_RUN_19341_3#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453723/19341_3#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453723/19341_3#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#75 ERR1214508 SC_EXP_18090_1#188 448 f4483b0ff11ac037cdfe161014d683d5;acbca5ee70d2466620c7eb99a87915a8 1313 20c7fc08ab71648871dacd22e990b5e0;b7ce44519aa932d139c59d3250f636aa SAMEA3431542 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214508/ERR1214508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214508/ERR1214508_2.fastq.gz 2800442 WGS GPS_HK_02-sc-2296716 RANDOM 53633352;59320478 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214508/ERR1214508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214508/ERR1214508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214508/18090_1#188.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214508/18090_1#188.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214508/ERR1214508_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214508/ERR1214508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214508/18090_1#188.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214508/18090_1#188.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80977018;4754 ERS740827 ERX1286721 GENOMIC 15034874 350055250 2016-01-19 SC_RUN_18090_1#188 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214508/18090_1#188.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214508/18090_1#188.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#188 ERR1202459 SC_EXP_17966_5#9 464 51b324027c38fe3725f351e030617682;38d7cb6f07f6e4d3935664a1e41273c6 1313 ab7603372e4ada163f0df21063662328;3a3132efea775ae98f75d936184a0d27 SAMEA3390028 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202459/ERR1202459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202459/ERR1202459_2.fastq.gz 1919260 WGS GPS_MW_BQN1M5-sc-2296273 RANDOM 36229575;36533880 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202459/ERR1202459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202459/ERR1202459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202459/17966_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202459/17966_5#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202459/ERR1202459_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202459/ERR1202459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202459/17966_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202459/17966_5#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 50574960;3194 ERS726131 ERX1274701 GENOMIC 15025456 239907500 2016-01-12 SC_RUN_17966_5#9 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202459/17966_5#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202459/17966_5#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#9 ERR1202496 SC_EXP_17966_5#46 464 e85f9fd6fc9d80f55bcaf8c4e8f16d42;39bbb8b13632d7a2bf219384f3490c21 1313 30c7915d0b8eedb6e325058ba773f3c0;c2d03c2afceb1d858fe7f5674a37e5c2 SAMEA3390078 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202496/ERR1202496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202496/ERR1202496_2.fastq.gz 1676244 WGS GPS_MW_C14797-sc-2296351 RANDOM 31614881;30948542 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202496/ERR1202496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202496/ERR1202496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202496/17966_5#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202496/17966_5#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202496/ERR1202496_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202496/ERR1202496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202496/17966_5#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202496/17966_5#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 43424708;2824 ERS726181 ERX1274738 GENOMIC 15025520 209530500 2016-01-12 SC_RUN_17966_5#46 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202496/17966_5#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202496/17966_5#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#46 ERR1106772 SC_EXP_17428_8#149 478 cac4c7955fa2ec53401b8a6aec169742;656809b4e39a916eaf28f82274735731 1313 c91780cc2ed88cf287bf9e027cbc028d;adbd38f1cd34116e3d6987b7e7b42b37 SAMEA3381363 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106772/ERR1106772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106772/ERR1106772_2.fastq.gz 2083660 WGS GPS_GM_1875-sc-2279213 RANDOM 36749205;37794973 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106772/ERR1106772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/002/ERR1106772/ERR1106772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106772/17428_8#149.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106772/17428_8#149.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/002/ERR1106772/ERR1106772_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/002/ERR1106772/ERR1106772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106772/17428_8#149.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106772/17428_8#149.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56581644;3583 ERS719622 ERX1186303 GENOMIC 14702583 260457500 2015-11-03 SC_RUN_17428_8#149 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106772/17428_8#149.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106772/17428_8#149.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#149 ERR1202394 SC_EXP_17870_8#134 447 48244a70b03727f85a5ae8e5f72f667f;8d870a30bbbf530502a11f928ed33609 1313 4b40d2c800fb179f6eca43a675b55bb1;10dae5927b124be4e5dca1fe0c932cee SAMEA3389902 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202394/ERR1202394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202394/ERR1202394_2.fastq.gz 2686716 WGS GPS_MW_BKQ6TY_R1-sc-2296146 RANDOM 52384915;56951728 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202394/ERR1202394_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202394/ERR1202394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202394/17870_8#134.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202394/17870_8#134.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202394/ERR1202394_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202394/ERR1202394_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202394/17870_8#134.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202394/17870_8#134.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83176884;4429 ERS726005 ERX1274636 GENOMIC 14977651 335839500 2016-01-12 SC_RUN_17870_8#134 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202394/17870_8#134.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202394/17870_8#134.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#134 ERR1065528 SC_EXP_17138_4#45 472 dc57c9c816a1fda8a86c787623664e64;22ca1b293b66d21eac2ffcbe037b70f1 1313 b46c42d6d6d884b0dfa525eee0bf7994;3825a4ca4f7e74aa53596b2fcfda5dfa SAMEA3354327 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065528/ERR1065528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065528/ERR1065528_2.fastq.gz 4970484 WGS ZA_GPS_SP515_R1-sc-2278954 RANDOM 99777246;99136271 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065528/ERR1065528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065528/ERR1065528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065528/17138_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065528/17138_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065528/ERR1065528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065528/ERR1065528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065528/17138_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065528/17138_4#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 152868297;8260 ERS708682 ERX1145678 GENOMIC 14468606 621310500 2015-10-13 SC_RUN_17138_4#45 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065528/17138_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065528/17138_4#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#45 ERR979954 SC_EXP_16288_3#81 234 0ce4cfdc74e533cb38e1d933df4e2ee1;ce9b1ca4710c03b585a507976f00a917 1313 071b8afde5ee80e17198e2365c3f7799;d35feec7cb74c0c2d87447a35d5c81ca SAMEA3232424 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979954/ERR979954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979954/ERR979954_2.fastq.gz 4880162 WGS GPS_NP_2111-sc-2205342 RANDOM 162062651;159584639 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979954/ERR979954_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979954/ERR979954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979954/16288_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979954/16288_3#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979954/ERR979954_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979954/ERR979954_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979954/16288_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979954/16288_3#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260283376;7622 ERS653635 ERX1056826 GENOMIC 13296146 488016200 2015-08-12 SC_RUN_16288_3#81 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979954/16288_3#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979954/16288_3#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#81 ERR909095 SC_EXP_15841_3#56 225 fa1b8732d1c1cdb1d755437d180c6c53;8624e3e9937e56e12b9f0b585dcfd432 1313 8a82a381ef3c0cf68ff96f2219df532f;c02030017b60d01b7d1a93973721de02 SAMEA3208702 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909095/ERR909095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909095/ERR909095_2.fastq.gz 5003520 WGS GPS_ZA_carriage_SP756-sc-2204836 RANDOM 154589941;159859116 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909095/ERR909095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909095/ERR909095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909095/15841_3#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909095/15841_3#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909095/ERR909095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909095/ERR909095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909095/15841_3#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909095/15841_3#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253546655;7943 ERS639804 ERX988350 GENOMIC 13267878 500352000 2015-06-09 SC_RUN_15841_3#56 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909095/15841_3#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909095/15841_3#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#56 ERR909263 SC_EXP_15841_5#34 223 d57aeecacc06cd0d17f0f14136e2c522;c6e12d26016724f75b340241f0a6a7a0 1313 5771514aec70236de14642719cb7fc8f;c445dc9b89063cb78bc47c1cd42aa271 SAMEA3206944 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909263/ERR909263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909263/ERR909263_2.fastq.gz 5511504 WGS GPS_ZA_carriage_SP302-sc-2191880 RANDOM 174934975;180489352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909263/ERR909263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909263/ERR909263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909263/15841_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909263/15841_5#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909263/ERR909263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909263/ERR909263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909263/15841_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909263/15841_5#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287513704;8789 ERS638954 ERX988518 GENOMIC 13275939 551150400 2015-06-09 SC_RUN_15841_5#34 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909263/15841_5#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909263/15841_5#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#34 ERR862277 SC_EXP_15378_2#19 205 fdddbf31624a0267b3fb550d4cc4b3b6;1d7d46019cda2b853ddb63abb443ebbd 1313 40baaa7a7108b9d81003f3345f0f0dd1;1714815a038fd94c0debca910e8cee22 SAMEA3171266 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862277/ERR862277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862277/ERR862277_2.fastq.gz 3279268 WGS GPS_MW_1863-sc-2139830 RANDOM 98986480;102891998 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862277/ERR862277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862277/ERR862277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862277/15378_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862277/15378_2#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862277/ERR862277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862277/ERR862277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862277/15378_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862277/15378_2#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 160744716;5239 ERS625657 ERX941927 GENOMIC 12810460 327926800 2015-04-21 SC_RUN_15378_2#19 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862277/15378_2#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862277/15378_2#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#19 ERR862466 SC_EXP_15378_4#18 205 19c43de455c319588a8ad6914f733617;8ea04c5d17f26e23c238ffdfb363b544 1313 4c039761be5c27106f068ed20377181a;cb964db4f8d3f8f4449ab914a36856a5 SAMEA3171150 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862466/ERR862466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862466/ERR862466_2.fastq.gz 3287804 WGS GPS_MW_3622-sc-2139713 RANDOM 109728292;113223280 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862466/ERR862466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862466/ERR862466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862466/15378_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862466/15378_4#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862466/ERR862466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862466/ERR862466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862466/15378_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862466/15378_4#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 181274901;5437 ERS625541 ERX942116 GENOMIC 12826879 328780400 2015-04-21 SC_RUN_15378_4#18 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862466/15378_4#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862466/15378_4#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#18 ERR862434 SC_EXP_15378_3#81 191 685066d379b81647d1c27c7da8a0a18b;fdef2f98d280db6a42939e63c5f670be 1313 97fe0a976a4910a64e5de24d27b8b2db;6234248597bc810c088d905eeb02e622 SAMEA3171118 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862434/ERR862434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862434/ERR862434_2.fastq.gz 5039486 WGS GPS_MW_320-sc-2139681 RANDOM 174820523;179271368 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862434/ERR862434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862434/ERR862434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862434/15378_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862434/15378_3#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862434/ERR862434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862434/ERR862434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862434/15378_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862434/15378_3#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 290172537;8125 ERS625509 ERX942084 GENOMIC 12815396 503948600 2015-04-21 SC_RUN_15378_3#81 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862434/15378_3#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862434/15378_3#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#81 ERR774552 SC_EXP_14936_4#79 220 1b7bc2fb7a910ef31a56223544ddb2d6;488b16cba898a98ae95714fdecab1ee4 1313 a3012da7487054ffc32791a33dee62f7;27744085f89e16c986ca50966b51c9a0 SAMEA2814384 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774552/ERR774552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774552/ERR774552_2.fastq.gz 4198238 WGS GPS_ZA_2596-sc-2138178 RANDOM 153799836;154880823 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774552/ERR774552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774552/ERR774552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774552/14936_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774552/14936_4#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774552/ERR774552_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774552/ERR774552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774552/14936_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774552/14936_4#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257642144;6727 ERS566752 ERX717431 GENOMIC 12347999 419823800 2015-03-03 SC_RUN_14936_4#79 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774552/14936_4#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774552/14936_4#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#79 ERR773941 SC_EXP_14913_3#32 225 89222d60184573efc0e6b2059b625702;f1fdb8806480eca7d26f0f73952ce9a9 1313 64834667f82532093f0e10af0ddf1ad8;f77bd4dbfc3c901d954ca82142aa025a SAMEA2813957 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773941/ERR773941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773941/ERR773941_2.fastq.gz 5144122 WGS GPS_ZA_2169-sc-2022441 RANDOM 176638804;183452499 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773941/ERR773941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773941/ERR773941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773941/14913_3#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773941/14913_3#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773941/ERR773941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773941/ERR773941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773941/14913_3#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773941/14913_3#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295373844;8137 ERS566325 ERX716820 GENOMIC 12345997 514412200 2015-03-03 SC_RUN_14913_3#32 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773941/14913_3#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773941/14913_3#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#32 ERR774574 SC_EXP_14936_5#8 211 78d1386c4c601ea02c016c53b992ccfa;f336dca209ab10cbc4ea56fa73517fd5 1313 bc665b58d058018257fcf80f8d6efa9d;909d9af15e590d081073feea1e96f33e SAMEA2783634 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774574/ERR774574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774574/ERR774574_2.fastq.gz 6240090 WGS GPS_MW_C1705_R1-sc-2022129 RANDOM 227897782;228231230 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774574/ERR774574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774574/ERR774574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774574/14936_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774574/14936_5#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774574/ERR774574_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774574/ERR774574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774574/14936_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774574/14936_5#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 381981468;9997 ERS553379 ERX717453 GENOMIC 12403548 624009000 2015-03-03 SC_RUN_14936_5#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774574/14936_5#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774574/14936_5#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#8 ERR736910 SC_EXP_14555_4#13 208 14286eca690abf5d6c2e150ff47555d3;21a9ba329ce27f2bfa19003620361d4c 1313 14e7bae27937688939564aabed743004;d5b077e556ae18504bc87f6d9cda8e73 SAMEA2658940 2015-01-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736910/ERR736910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736910/ERR736910_2.fastq.gz 4563362 WGS GPS_ZA_2055-sc-2021578 RANDOM 139144802;143324450 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736910/ERR736910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736910/ERR736910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736910/14555_4#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736910/14555_4#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR736/ERR736910/ERR736910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR736/ERR736910/ERR736910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736910/14555_4#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736910/14555_4#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230969114;7373 ERS508968 ERX680601 GENOMIC 11814949 456336200 2015-01-20 SC_RUN_14555_4#13 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR736/ERR736910/14555_4#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR736/ERR736910/14555_4#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA402059 14555_4#13 ERR730830 SC_EXP_14566_5#70 233 f8ff225e1ccebc3a63799f4bd4dd2fbe;97bde1bc65561f7d15e6f5992d550a0b 1313 e46d4e8f3bb10857767ba7e6e4f4d959;08cda57fb43e977dd615cc05d9bf9f10 SAMEA2658793 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730830/ERR730830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730830/ERR730830_2.fastq.gz 3853868 WGS GPS_ZA_1827-sc-2021402 RANDOM 110642213;112267138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730830/ERR730830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730830/ERR730830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730830/14566_5#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730830/14566_5#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730830/ERR730830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730830/ERR730830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730830/14566_5#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730830/14566_5#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 179543515;6315 ERS508821 ERX674776 GENOMIC 11838993 385386800 2015-01-14 SC_RUN_14566_5#70 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730830/14566_5#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730830/14566_5#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#70 ERR730769 SC_EXP_14566_5#9 233 cdd6da0100024ee171b32fc5b268415c;814810d4da56bf20d15a7416bdca0415 1313 3eb01a45d3b51d5b8d1a5ec3ed0566be;288e45ae80b52ccd0abe2a2cf7b0c934 SAMEA2658612 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730769/ERR730769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730769/ERR730769_2.fastq.gz 4004920 WGS GPS_ZA_1766-sc-2021220 RANDOM 116147416;117849827 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730769/ERR730769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730769/ERR730769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730769/14566_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730769/14566_5#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730769/ERR730769_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730769/ERR730769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730769/14566_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730769/14566_5#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188772685;6483 ERS508640 ERX674715 GENOMIC 11838926 400492000 2015-01-14 SC_RUN_14566_5#9 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730769/14566_5#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730769/14566_5#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#9 ERR701795 SC_EXP_14257_1#18 234 183e55a8ea4c76440742dee32e9b98f1;0628dccd2143379ea0646eeb6e6fa056 1313 783674c99ff4c73fa174b947fa19d55a;33cedb89e584296ae33b1d206d7da449 SAMEA2658315 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701795/ERR701795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701795/ERR701795_2.fastq.gz 5239788 WGS GPS_ZA_1395-sc-2020920 RANDOM 167201634;170016524 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701795/ERR701795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701795/ERR701795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701795/14257_1#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701795/14257_1#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701795/ERR701795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701795/ERR701795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701795/14257_1#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701795/14257_1#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277833297;8556 ERS508343 ERX646058 GENOMIC 11814720 523978800 2014-12-16 SC_RUN_14257_1#18 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701795/14257_1#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701795/14257_1#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#18 ERR701792 SC_EXP_14257_1#15 234 be25007f1485630fb10b2213d28a3778;0cb451f21b7da53e645a735c36736791 1313 ee15f8e247ef1e071e606a4907abdca6;96f0d7395349f971c9cde085c05cde3c SAMEA2658306 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701792/ERR701792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701792/ERR701792_2.fastq.gz 5950478 WGS GPS_ZA_1392-sc-2020911 RANDOM 190102735;193505668 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701792/ERR701792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701792/ERR701792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701792/14257_1#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701792/14257_1#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701792/ERR701792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701792/ERR701792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701792/14257_1#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701792/14257_1#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 315371414;9709 ERS508334 ERX646055 GENOMIC 11814779 595047800 2014-12-16 SC_RUN_14257_1#15 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701792/14257_1#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701792/14257_1#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#15 ERR662346 SC_EXP_13710_1#30 186 434b9debd74f88a13c0328feb340db20;795fd7a47be2c5fe8acab77010719a46 1313 feb01995f5dee5bc762809496036787f;23eb98c70ce116b2711e73351af08f7e SAMEA2521807 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662346/ERR662346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662346/ERR662346_2.fastq.gz 13409098 WGS 2012215656-sc-1947101 RANDOM 432480927;454489023 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662346/ERR662346_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662346/ERR662346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662346/13710_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662346/13710_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662346/ERR662346_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662346/ERR662346_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662346/13710_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662346/13710_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 769081573;20890 ERS455347 ERX618622 GENOMIC 11100405 1340909800 2014-10-28 SC_RUN_13710_1#30 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662346/13710_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662346/13710_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#30 ERR632870 SC_EXP_13414_8#3 241 de82ddce354889b8c65e6825ad2d5b54;5152b28c579f28a6f198104dad3c2ebe 1313 a66c592184077f7b21ee6ea9a471be10;801be25d7f4d356750d8809117a56aab SAMEA2553684 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632870/ERR632870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632870/ERR632870_2.fastq.gz 4469734 WGS GPS_ZA_620-sc-1950764 RANDOM 144345696;149170920 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632870/ERR632870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632870/ERR632870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632870/13414_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632870/13414_8#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632870/ERR632870_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632870/ERR632870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632870/13414_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632870/13414_8#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241455923;7404 ERS464185 ERX589424 GENOMIC 10631105 446973400 2014-09-23 SC_RUN_13414_8#3 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632870/13414_8#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632870/13414_8#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#3 ERR600548 SC_EXP_13415_6#48 231 9b9c16175b8700212e0f33beb43d8e99;9df3de386923daa1ec0b7ba3d16d448b 1313 d287056ff771376aab821bab5e358a5f;38f23caa4e57b283b42a48a9f04b1369 SAMEA2554063 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600548/ERR600548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600548/ERR600548_2.fastq.gz 4804796 WGS GPS_ZA_952-sc-1951099 RANDOM 161489017;166889216 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600548/ERR600548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600548/ERR600548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600548/13415_6#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600548/13415_6#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600548/ERR600548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600548/ERR600548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600548/13415_6#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600548/13415_6#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269902909;7788 ERS464564 ERX557377 GENOMIC 10631364 480479600 2014-09-16 SC_RUN_13415_6#48 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600548/13415_6#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600548/13415_6#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#48 ERR632900 SC_EXP_13414_8#33 241 fad82f560792668ff45de8848042b1de;552a833d72e4208d4775959e4bfae569 1313 ed8dd2875fc2a3b0e67d18ef1bcc88a1;3ab31bacdde7b168045bc9d167acdef2 SAMEA2553714 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632900/ERR632900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632900/ERR632900_2.fastq.gz 3866022 WGS GPS_ZA_650-sc-1950794 RANDOM 126591614;129751866 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632900/ERR632900_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632900/ERR632900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632900/13414_8#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632900/13414_8#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632900/ERR632900_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632900/ERR632900_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632900/13414_8#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632900/13414_8#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 210196115;6310 ERS464215 ERX589454 GENOMIC 10631085 386602200 2014-09-23 SC_RUN_13414_8#33 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632900/13414_8#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632900/13414_8#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#33 ERR662452 SC_EXP_13710_2#64 196 592e978f4d1f9dcf1f474fac4d84fc9e;2c9e1004d91dabde40a8960860dfa832 1313 69fe0f9bd739313bc5ce8e1925c3ba88;484818b90ad094d26ee750d156dd0d89 SAMEA2521847 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662452/ERR662452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662452/ERR662452_2.fastq.gz 6019874 WGS 2013212863-sc-1947143 RANDOM 199435503;207524029 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662452/ERR662452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662452/ERR662452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662452/13710_2#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662452/13710_2#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662452/ERR662452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662452/ERR662452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662452/13710_2#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662452/13710_2#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 338662170;9875 ERS455387 ERX618728 GENOMIC 11100530 601987400 2014-10-28 SC_RUN_13710_2#64 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662452/13710_2#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662452/13710_2#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#64 ERR568624 SC_EXP_12837_3#19 231 ed5d39fcf314567e8492b554318e847d;70245795d77b68b88f81cd5e7e3ab86f 1313 82a1867cfae62cbf1a70bb1ff2cade8b;8dff0e05d60cfbd9d703a6dc7e4c4f1a SAMEA2434607 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568624/ERR568624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568624/ERR568624_2.fastq.gz 5944444 WGS SA_GPS_SP502-sc-1895672 RANDOM 192624436;195754116 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568624/ERR568624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568624/ERR568624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568624/12837_3#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568624/12837_3#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568624/ERR568624_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568624/ERR568624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568624/12837_3#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568624/12837_3#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320232789;9778 ERS428784 ERX527613 GENOMIC 9986316 594444400 2014-07-23 SC_RUN_12837_3#19 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568624/12837_3#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568624/12837_3#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#19 ERR600494 SC_EXP_13415_5#90 246 c6edd2bafa8e285d12fb0c394ec3b47d;e4c08e20b46dd3d8f795b32f259ba6c8 1313 fa757cae7d6eee895d89032d27552c66;a0f93dd4aaffed76557458f8ef3f3a43 SAMEA2554009 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600494/ERR600494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600494/ERR600494_2.fastq.gz 3938254 WGS GPS_ZA_898-sc-1951044 RANDOM 129059237;134565846 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600494/ERR600494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600494/ERR600494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600494/13415_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600494/13415_5#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600494/ERR600494_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600494/ERR600494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600494/13415_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600494/13415_5#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 217082007;6522 ERS464510 ERX557323 GENOMIC 10646213 393825400 2014-09-16 SC_RUN_13415_5#90 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600494/13415_5#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600494/13415_5#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#90 ERR600360 SC_EXP_13415_4#50 250 8505b27295ecf1cc9c30b8307a53ce04;151c61f046a8be06a987d0102fe0de97 1313 0d4fab62d1b78531852c7a116358a02c;8d264fc351856be70867a8c8373cf7f9 SAMEA2553826 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600360/ERR600360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600360/ERR600360_2.fastq.gz 4015146 WGS GPS_ZA_762-sc-1950907 RANDOM 129493683;134454054 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600360/ERR600360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600360/ERR600360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600360/13415_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600360/13415_4#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600360/ERR600360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600360/ERR600360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600360/13415_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600360/13415_4#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 216626385;6531 ERS464327 ERX557189 GENOMIC 10631196 401514600 2014-09-16 SC_RUN_13415_4#50 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600360/13415_4#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600360/13415_4#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#50 ERR570467 SC_EXP_12837_5#68 238 6cbb7ba3b010a73820ac831c96b0bece;c14b6c47ca0a56ca2389cdf596b5a450 1313 79999d4f82629a48da92a2e17b056027;5d31b7d21cd24a824d767f089621fa82 SAMEA2434832 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570467/ERR570467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570467/ERR570467_2.fastq.gz 5052742 WGS SA_GPS_SP290-sc-1895899 RANDOM 171553043;175225748 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570467/ERR570467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570467/ERR570467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570467/12837_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570467/12837_5#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570467/ERR570467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570467/ERR570467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570467/12837_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570467/12837_5#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287168782;8172 ERS429009 ERX529456 GENOMIC 9993258 505274200 2014-07-28 SC_RUN_12837_5#68 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570467/12837_5#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570467/12837_5#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#68 ERR506034 SC_EXP_12299_1#56 227 f47cad6b87c1d6c627aa7f8aaf6926af;608cdea15a29f1560afc7b0a12d228f6 1313 92f4ed38f0a5028b21e50d4e14f8a43b;f0eff3af2008ea5cd477cbef470850d3 SAMEA2336168 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506034/ERR506034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506034/ERR506034_2.fastq.gz 6019134 WGS 2010220243-sc-1811099 RANDOM 197982652;204003281 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506034/ERR506034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506034/ERR506034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506034/12299_1#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506034/12299_1#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506034/ERR506034_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506034/ERR506034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506034/12299_1#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506034/12299_1#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 332500286;9893 ERS394362 ERX471391 GENOMIC 9446563 601913400 2014-05-19 SC_RUN_12299_1#56 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506034/12299_1#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506034/12299_1#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#56 ERR461904 SC_EXP_11893_1#81 234 512e6bc8e836fdd4f52a6ba7bc22edb8;7acfb1261ed7560ff9fbc6efb5af2916 1313 8bd21e8f23117747d963df96a46c7557;14e46276c7109af55d9fb1648cd2b553 SAMEA2238840 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461904/ERR461904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461904/ERR461904_2.fastq.gz 4083000 WGS 2103734-sc-2013-11-05T12:03:17Z-1750203 RANDOM 136703141;141236430 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461904/ERR461904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461904/ERR461904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461904/11893_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461904/11893_1#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461904/ERR461904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461904/ERR461904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461904/11893_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461904/11893_1#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 228674283;6765 ERS367652 ERX428245 GENOMIC 9028134 408300000 2014-03-18 SC_RUN_11893_1#81 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461904/11893_1#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461904/11893_1#81.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#81 ERR461651 SC_EXP_11861_4#4 224 9808af7ca70fbbb7515618d07626b336;bc02dcda00772ed3c6afe7f97c64e75e 1313 97d798a79dc54b10bf22d8bb6343a98d;2ee88659d4504225a65cfd17a06e3283 SAMEA2238953 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461651/ERR461651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461651/ERR461651_2.fastq.gz 4010334 WGS 2120109-sc-2013-11-05T12:05:27Z-1750318 RANDOM 124784749;130926454 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461651/ERR461651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461651/ERR461651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461651/11861_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461651/11861_4#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461651/ERR461651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461651/ERR461651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461651/11861_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461651/11861_4#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 208858622;6639 ERS367765 ERX427992 GENOMIC 9016389 401033400 2014-03-18 SC_RUN_11861_4#4 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461651/11861_4#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461651/11861_4#4.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#4 ERR461084 SC_EXP_11860_5#81 210 88436375456931db3a12b78e65ec53b9;19ae17da250183e7a464fde72ebc00ed 1313 bf5816c4295b778cb935db707c9436f9;95801c9f8332fc0afa905342b965739a SAMEA2238451 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461084/ERR461084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461084/ERR461084_2.fastq.gz 2112018 WGS 2071747-sc-2013-11-05T11:56:39Z-1749810 RANDOM 56485411;59641777 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461084/ERR461084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461084/ERR461084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461084/11860_5#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461084/11860_5#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461084/ERR461084_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461084/ERR461084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461084/11860_5#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461084/11860_5#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 90794531;3555 ERS367263 ERX427425 GENOMIC 9014493 211201800 2014-03-18 SC_RUN_11860_5#81 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461084/11860_5#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461084/11860_5#81.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR433601 SC_EXP_11657_2#87 228 8664a658e4c68edbae4ef2b4a11088e7;8173f09c74fc8a8e318de11c365d7dd1 1313 cd1b7b7f23ba00a1e4e07856526ebe71;4a3ed038942ab3b7dfb1c7bca0632641 SAMEA2159101 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433601/ERR433601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433601/ERR433601_2.fastq.gz 5900100 WGS 1160_00-sc-2013-07-03T13:39:36Z-1659507 RANDOM 205111330;210507539 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433601/ERR433601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433601/ERR433601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433601/11657_2#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433601/11657_2#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433601/ERR433601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433601/ERR433601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433601/11657_2#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433601/11657_2#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 343854632;9714 ERS322675 ERX399876 GENOMIC 8593191 590010000 2014-02-18 SC_RUN_11657_2#87 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433601/11657_2#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433601/11657_2#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_2#87 ERR461427 SC_EXP_11861_1#52 225 4057ad0a53cf1859dad20d11868d90f9;2953249c9058828654329bb78e89afbe 1313 821c8852cb6c22d47c76d6a294c972ed;d62d2b0d2756423082f6eb0f7aaeb264 SAMEA2238614 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461427/ERR461427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461427/ERR461427_2.fastq.gz 3523280 WGS 2090244-sc-2013-11-05T11:59:27Z-1749975 RANDOM 112295129;117664410 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461427/ERR461427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461427/ERR461427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461427/11861_1#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461427/11861_1#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461427/ERR461427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461427/ERR461427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461427/11861_1#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461427/11861_1#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 187737499;5809 ERS367426 ERX427768 GENOMIC 9016150 352328000 2014-03-18 SC_RUN_11861_1#52 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461427/11861_1#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461427/11861_1#52.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR129057 SC_EXP_7622_2#33 219 ddb52f28bbf514637f56a4b0db676372 1313 de76ca0fc15b6cb6865670e63bd1fdcf;ac61a1c0df3523cc78ff3ab830aff4f0 SAMEA1463113 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129057/ERR129057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129057/ERR129057_2.fastq.gz 2894674 WGS BR1101-sc-2011-11-08T10:06:45Z-1298316 RANDOM 309072087;318611128 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129057/ERR129057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129057/ERR129057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129057/7622_2#33.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129057/ERR129057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129057/ERR129057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129057/7622_2#33.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 604941680 ERS069948 ERX105198 GENOMIC 4336466 578934800 2012-05-28 SC_RUN_7622_2#33 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129057/7622_2#33.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129135 SC_EXP_7622_4#15 221 4c4dfb1515cd2d96dafb7384aa6be397 1313 157096e884f0197d78296caa2d91db3d;ead00ff54b74081ca70c85778188901d SAMEA1463100 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129135/ERR129135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129135/ERR129135_2.fastq.gz 2807820 WGS LE4030-sc-2011-11-08T10:07:43Z-1298394 RANDOM 301617407;308507921 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129135/ERR129135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129135/ERR129135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129135/7622_4#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129135/ERR129135_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129135/ERR129135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129135/7622_4#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 593361852 ERS070026 ERX105276 GENOMIC 4336544 561564000 2012-05-28 SC_RUN_7622_4#15 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129135/7622_4#15.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR2091249 SC_EXP_22841_4#140 438 2130a55a05c6d70aa5d8b99958be4291;b93053df416bbfa6ee2f71ddad0c27bb 1313 29ec53cc330db6ecdfe0ccb23d5c4ff3;f758a81c0e722431bc08861b5447c158 SAMEA104035446 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091249/ERR2091249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091249/ERR2091249_2.fastq.gz 2521748 WGS a0ed7010-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51057573;55165467 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091249/ERR2091249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091249/ERR2091249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091249/22841_4#140.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091249/22841_4#140.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091249/ERR2091249_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091249/ERR2091249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091249/22841_4#140.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091249/22841_4#140.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74036823;4209 ERS1699339 ERX2148043 GENOMIC DN477153Q:E6 315218500 2017-08-08 SC_RUN_22841_4#140 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091249/22841_4#140.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091249/22841_4#140.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#140 ERR124311 SC_EXP_7553_5#95 207 5e5c841448b5a7fa4dc1887b248a51b2 1313 2282d9d99f972ce0f1c71c99412cc4f8;d522f53c39af502c6016eba61c2ceaae SAMEA1463083 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124311/ERR124311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124311/ERR124311_2.fastq.gz 5650234 WGS PT8093-sc-2011-11-08T10:09:54Z-1298570 RANDOM 593353365;619770480 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124311/ERR124311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124311/ERR124311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124311/7553_5#95.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124311/ERR124311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124311/ERR124311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124311/7553_5#95.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1184347726 ERS070202 ERX100493 GENOMIC 4383214 1130046800 2012-05-09 SC_RUN_7553_5#95 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124311/7553_5#95.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR2091134 SC_EXP_22841_4#25 440 7af826f6f956b225afed9c9491618dde;daf5233d3959ca5ab5ba156464aaac42 1313 a72799fe4ebb5f47b4844b986d30362d;73a81ff318ea230289e0982ba38429c2 SAMEA104035319 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091134/ERR2091134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091134/ERR2091134_2.fastq.gz 2702088 WGS 97f5e7d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55333149;58213046 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091134/ERR2091134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091134/ERR2091134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091134/22841_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091134/22841_4#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091134/ERR2091134_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091134/ERR2091134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091134/22841_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091134/22841_4#25.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79449726;4497 ERS1699212 ERX2147928 GENOMIC DN477152P:A4 337761000 2017-08-08 SC_RUN_22841_4#25 109 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091134/22841_4#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091134/22841_4#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#25 ERR2090864 SC_EXP_22841_2#133 352 6f092b43305f8aa2ef29880a026bd396;667d25db0d7b96869a2fad56bcb2aa27 1313 92035e9603e7f90f355304a8bf32da47;fd257ebd8d7382ca2ffac0fd27633db9 SAMEA104035713 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090864/ERR2090864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090864/ERR2090864_2.fastq.gz 3104286 WGS b96fb300-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 66488517;71252709 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090864/ERR2090864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090864/ERR2090864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090864/22841_2#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090864/22841_2#133.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090864/ERR2090864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090864/ERR2090864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090864/22841_2#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090864/22841_2#133.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96607707;5130 ERS1699606 ERX2147658 GENOMIC DN483654V:F5 388035750 2017-08-08 SC_RUN_22841_2#133 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090864/22841_2#133.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090864/22841_2#133.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#133 ERR1947760 SC_EXP_21946_6#240 451 92507abb4f286e852fa70aad5cd379d8;e8f80a6bafd683f5b9078183ef079286 1313 f93dd72b614ec711c2a14725f047512f;6fa4dfa61451454ea7417c760142ce88 SAMEA4561055 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947760/ERR1947760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947760/ERR1947760_2.fastq.gz 2330452 WGS 03c17fc0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 59281456;82490385 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947760/ERR1947760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947760/ERR1947760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947760/21946_6#240.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947760/21946_6#240.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947760/ERR1947760_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947760/ERR1947760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947760/21946_6#240.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947760/21946_6#240.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102875480;3962 ERS1460234 ERX2013547 GENOMIC 18471370 351898252 2017-04-25 SC_RUN_21946_6#240 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947760/21946_6#240.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947760/21946_6#240.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR2090738 SC_EXP_22841_2#7 396 3306a225f1a1dd06646e661eb842a1d0;fc79b50492eba55c10746099f5f455b9 1313 7c0a00cd852350b18a2c1ee24c6098fb;e5f856ea6d0bffa1f2e32d71be9d087a SAMEA104035572 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090738/ERR2090738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090738/ERR2090738_2.fastq.gz 2813622 WGS aab42f30-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62744777;65733426 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090738/ERR2090738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090738/ERR2090738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090738/22841_2#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090738/22841_2#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090738/ERR2090738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090738/ERR2090738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090738/22841_2#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090738/22841_2#7.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90835880;4669 ERS1699465 ERX2147532 GENOMIC DN483653U:G1 351702750 2017-08-08 SC_RUN_22841_2#7 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090738/22841_2#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090738/22841_2#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#7 ERR1947744 SC_EXP_21946_6#224 457 9345f8a3fe9bdf27c61ac9cdc953be58;24acb81b54ecfcd394eb7f997fa7f6e9 1313 4772d1caa075344f889c472351986a83;654e4117a9d311511fa7611343901fa2 SAMEA4561039 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947744/ERR1947744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947744/ERR1947744_2.fastq.gz 2436132 WGS 03374120-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 61975179;87886842 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947744/ERR1947744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947744/ERR1947744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947744/21946_6#224.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947744/21946_6#224.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947744/ERR1947744_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947744/ERR1947744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947744/21946_6#224.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947744/21946_6#224.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 109664278;4133 ERS1460218 ERX2013531 GENOMIC 18471368 367855932 2017-04-25 SC_RUN_21946_6#224 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947744/21946_6#224.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947744/21946_6#224.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947605 SC_EXP_21946_6#85 440 86f00b374566f10c6d3298b401f28fbf;d7ebbdb4ed0480e2a79d467e79cc4b31 1313 0c5db3133e0a360269a62841907ec1e5;1ac473e2cf55c94a97017464a536d6c5 SAMEA17661418 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947605/ERR1947605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947605/ERR1947605_2.fastq.gz 2287752 WGS 3869e050-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57447460;80241915 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947605/ERR1947605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947605/ERR1947605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947605/21946_6#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947605/21946_6#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947605/ERR1947605_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947605/ERR1947605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947605/21946_6#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947605/21946_6#85.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100157851;3880 ERS1461663 ERX2013392 GENOMIC 18471676 345450552 2017-04-25 SC_RUN_21946_6#85 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947605/21946_6#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947605/21946_6#85.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1756466 SC_EXP_20925_3#81 426 e78193d279124561316b5245bd3fb791;3124944294f0ed7793aa125c72ac1eb1 1313 a39cd2c1861e9679c41b189646fbed96;ae3194c46021786c67aa5736c85ba19c SAMEA4034900 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/006/ERR1756466/ERR1756466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/006/ERR1756466/ERR1756466_2.fastq.gz 5105580 WGS 3e13baa0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 98234060;105050214 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/006/ERR1756466/ERR1756466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/006/ERR1756466/ERR1756466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756466/20925_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756466/20925_3#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/006/ERR1756466/ERR1756466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/006/ERR1756466/ERR1756466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756466/20925_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756466/20925_3#81.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 155750624;8483 ERS1206010 ERX1823486 GENOMIC DN461288B:B11 638197500 2016-12-13 SC_RUN_20925_3#81 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756466/20925_3#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756466/20925_3#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#81 ERR1947512 SC_EXP_21903_8#358 436 39fccee7159b91d2c84d67dec609e231;bf50bb1cb13219a54ed46f19f86a5ec2 1313 7a9988266955dd556d131dbb80cd441b;4de0d42c9b383c8575f65aaa2d50e84c SAMEA4561540 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947512/ERR1947512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947512/ERR1947512_2.fastq.gz 1829476 WGS 304363b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 45257979;67121987 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947512/ERR1947512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947512/ERR1947512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947512/21903_8#358.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947512/21903_8#358.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947512/ERR1947512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947512/ERR1947512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947512/21903_8#358.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947512/21903_8#358.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 82044125;3162 ERS1460719 ERX2013299 GENOMIC 18453189 276250876 2017-04-25 SC_RUN_21903_8#358 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947512/21903_8#358.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947512/21903_8#358.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1288826 SC_EXP_18456_1#17 459 159763ebec8c3dfe8e04678546e19756;07887f692f27e612b2e548b0f74ce8af 1313 b96c9cb4d496051d8116c1182ecb2de1;3a1c921e193a088eea881f7f76d9e0db SAMEA3389202 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/006/ERR1288826/ERR1288826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/006/ERR1288826/ERR1288826_2.fastq.gz 2405174 WGS GPS_MW_154461-sc-2295675 RANDOM 56825592;49516800 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/006/ERR1288826/ERR1288826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/006/ERR1288826/ERR1288826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288826/18456_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288826/18456_1#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/006/ERR1288826/ERR1288826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/006/ERR1288826/ERR1288826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288826/18456_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288826/18456_1#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74673002;4081 ERS725305 ERX1360432 GENOMIC 14970282 300646750 2016-02-23 SC_RUN_18456_1#17 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288826/18456_1#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288826/18456_1#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#17 ERR1202153 SC_EXP_17870_7#83 463 9c2c82457048a143ad8c3252118eae59;c2969ac08664bbcc855d71783c87e613 1313 005029444c5a77c1ef0cb523b7923791;3cb3f69bd3a4aff46e240f7a5bf20ec7 SAMEA3389368 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202153/ERR1202153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202153/ERR1202153_2.fastq.gz 2296274 WGS GPS_MW_BND1EV-sc-2295843 RANDOM 43390308;44199806 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202153/ERR1202153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202153/ERR1202153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202153/17870_7#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202153/17870_7#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202153/ERR1202153_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202153/ERR1202153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202153/17870_7#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202153/17870_7#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65428348;3867 ERS725471 ERX1274395 GENOMIC 14978308 287034250 2016-01-12 SC_RUN_17870_7#83 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202153/17870_7#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202153/17870_7#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#83 ERR1214703 SC_EXP_18090_5#39 500 506c1877dde717080ced0e67c428af7b;2e3f4c02daaf468e530c2a1ca6de9c45 1313 abf0585d9d208270f25c230dac561062;9d5a0cd1299d83ec5ade597d09df7150 SAMEA3353707 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214703/ERR1214703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214703/ERR1214703_2.fastq.gz 5238646 WGS GPS_ZA_carriage_SP1697-sc-2278309 RANDOM 103982575;112555910 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214703/ERR1214703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214703/ERR1214703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214703/18090_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214703/18090_5#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/003/ERR1214703/ERR1214703_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/003/ERR1214703/ERR1214703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214703/18090_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214703/18090_5#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 157353573;8667 ERS708062 ERX1286916 GENOMIC 15112148 654830750 2016-01-19 SC_RUN_18090_5#39 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214703/18090_5#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214703/18090_5#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_5#39 ERR1192043 SC_EXP_17794_8#32 441 7d82b3ae6242e87862fc3d5f42dfcaaa;c0b0a36d86581e91f016eab414d4141b 1313 f176ee274f0d12aae4970d0f829e13dd;8302bc05c8f65b68b251a30b5d0be8b3 SAMEA3381533 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192043/ERR1192043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192043/ERR1192043_2.fastq.gz 2483356 WGS GPS_GM_2065-sc-2279411 RANDOM 48463867;50140393 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192043/ERR1192043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192043/ERR1192043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192043/17794_8#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192043/17794_8#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192043/ERR1192043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192043/ERR1192043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192043/17794_8#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192043/17794_8#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75364492;4147 ERS719792 ERX1265427 GENOMIC 14941618 310419500 2015-12-17 SC_RUN_17794_8#32 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192043/17794_8#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192043/17794_8#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#32 ERR1066307 SC_EXP_17175_8#23 467 8162fff32ed9590f27f4a762382d63ea;4c41bb8284c49cd6ba5f6f7f99dd8e62 1313 63a81967e3d2607ef2bd597490aec97f;c532bf78617c03f5c8fa31790827b108 SAMEA3353944 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066307/ERR1066307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066307/ERR1066307_2.fastq.gz 4356356 WGS GPS_ZA_2905-sc-2278550 RANDOM 79922161;83737300 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066307/ERR1066307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066307/ERR1066307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066307/17175_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066307/17175_8#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066307/ERR1066307_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066307/ERR1066307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066307/17175_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066307/17175_8#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 123566582;7210 ERS708299 ERX1146457 GENOMIC 14455760 544544500 2015-10-13 SC_RUN_17175_8#23 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066307/17175_8#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066307/17175_8#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#23 ERR1066182 SC_EXP_17175_6#80 449 a373f78bd65c044c26360da6a06df917;f59108ffbbe618b7f9188192ba1120b0 1313 37865c855eddc380ea2bde46a02da220;ad5e751f75bd241611fb30c689fb0249 SAMEA3353880 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066182/ERR1066182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066182/ERR1066182_2.fastq.gz 6317236 WGS GPS_ZA_carriage_SP1785-sc-2278484 RANDOM 111220211;115028283 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066182/ERR1066182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066182/ERR1066182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066182/17175_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066182/17175_6#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066182/ERR1066182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066182/ERR1066182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066182/17175_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066182/17175_6#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177498562;10531 ERS708235 ERX1146332 GENOMIC 14427526 789654500 2015-10-13 SC_RUN_17175_6#80 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066182/17175_6#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066182/17175_6#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#80 ERR1066056 SC_EXP_17175_5#44 463 aaa905421b01fd104e9bcdb6e509f136;8105ebd59144d17ac3470b1e25175498 1313 8258e605b192caad78e412773f4559ff;689d9591d3a73e3718b0172ec782def0 SAMEA3353626 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066056/ERR1066056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066056/ERR1066056_2.fastq.gz 5830702 WGS GPS_ZA_carriage_SP1656-sc-2278228 RANDOM 107237189;107557934 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066056/ERR1066056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066056/ERR1066056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066056/17175_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066056/17175_5#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066056/ERR1066056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066056/ERR1066056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066056/17175_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066056/17175_5#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165654507;9620 ERS707981 ERX1146206 GENOMIC 14423455 728837750 2015-10-13 SC_RUN_17175_5#44 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066056/17175_5#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066056/17175_5#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#44 ERR1065784 SC_EXP_17150_5#51 460 65c831caeb847311f5396d7941b6ca1d;8d966657b5f088d71e12530c93355649 1313 95a63d7b1ae9f92ef11842aa6dd10550;1cff1408dcb6e594ff2d2e112abdaa1c SAMEA3353817 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065784/ERR1065784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065784/ERR1065784_2.fastq.gz 5566206 WGS GPS_ZA_carriage_SP1836-sc-2278421 RANDOM 110722720;103756162 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065784/ERR1065784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065784/ERR1065784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065784/17150_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065784/17150_5#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065784/ERR1065784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065784/ERR1065784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065784/17150_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065784/17150_5#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164897100;9186 ERS708172 ERX1145934 GENOMIC 14423226 695775750 2015-10-13 SC_RUN_17150_5#51 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065784/17150_5#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065784/17150_5#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#51 ERR1065710 SC_EXP_17150_4#71 458 175f2b704df48ce6487d91cf16e4b15a;25a5035de2c79bc38ead6f988bcf6b22 1313 af25b36e4109adac7e1c5d296525e545;576d5b665baaefed60eb0b3f1951ecb9 SAMEA3353671 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065710/ERR1065710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065710/ERR1065710_2.fastq.gz 5698006 WGS GPS_ZA_carriage_SP1587-sc-2278273 RANDOM 108360425;105985559 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065710/ERR1065710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065710/ERR1065710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065710/17150_4#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065710/17150_4#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065710/ERR1065710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065710/ERR1065710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065710/17150_4#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065710/17150_4#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164447230;9425 ERS708026 ERX1145860 GENOMIC 14436474 712250750 2015-10-13 SC_RUN_17150_4#71 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065710/17150_4#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065710/17150_4#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#71 ERR1065313 SC_EXP_17059_8#17 447 41a6b468263cc0d1786c6dd434dc1ce2;2750bd583bba5b27bd6b2f63be15fa06 1313 6b2e9877c6f39472940898e8f6629637;a4decd20463895fb0d41da07347c0ad1 SAMEA3353381 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065313/ERR1065313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065313/ERR1065313_2.fastq.gz 4773826 WGS GPS_ZA_carriage_SP1345-sc-2277981 RANDOM 85890530;86965039 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065313/ERR1065313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065313/ERR1065313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065313/17059_8#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065313/17059_8#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065313/ERR1065313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065313/ERR1065313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065313/17059_8#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065313/17059_8#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 140190168;7820 ERS707736 ERX1145463 GENOMIC 14406185 596728250 2015-10-13 SC_RUN_17059_8#17 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065313/17059_8#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065313/17059_8#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#17 ERR1065735 SC_EXP_17150_5#2 460 6e3e530cb5a6538e9a3d5e73df9d390e;b9ff4886da63675dab8cdfd64fbc2458 1313 5910e30fc80a1d25b8e29f421165c217;51cf23fb4c1ec45acd7404e08d029bcc SAMEA3353906 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065735/ERR1065735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065735/ERR1065735_2.fastq.gz 4091530 WGS GPS_ZA_carriage_SP1798-sc-2278510 RANDOM 78421443;74524697 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065735/ERR1065735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065735/ERR1065735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065735/17150_5#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065735/17150_5#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065735/ERR1065735_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065735/ERR1065735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065735/17150_5#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065735/17150_5#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 115684724;6780 ERS708261 ERX1145885 GENOMIC 14423208 511441250 2015-10-13 SC_RUN_17150_5#2 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065735/17150_5#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065735/17150_5#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#2 ERR979990 SC_EXP_16288_4#34 217 79672d5ddd91816d9f476e6fa7294fc6;49095dbcf99fcb4e76bc532c22c8bd65 1313 bf0b4778e07291b8a3631282581a1137;da279274119a0acbe902a20334619d43 SAMEA3232460 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979990/ERR979990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979990/ERR979990_2.fastq.gz 4656980 WGS GPS_NP_2367-sc-2205378 RANDOM 167462686;162560669 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979990/ERR979990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979990/ERR979990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979990/16288_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979990/16288_4#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979990/ERR979990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979990/ERR979990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979990/16288_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979990/16288_4#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267347657;7413 ERS653671 ERX1056862 GENOMIC 13296249 465698000 2015-08-12 SC_RUN_16288_4#34 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979990/16288_4#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979990/16288_4#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#34 ERR1065185 SC_EXP_17059_6#74 444 901475a0a5289cb675ec25fa2f976c68;f3943e74e84d843aaf44376af15d7faf 1313 81d334072e8f39e2b32909a4f77e9656;4dd34d0b58518104fb94e15b99d0c725 SAMEA3353305 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065185/ERR1065185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065185/ERR1065185_2.fastq.gz 5403488 WGS GPS_ZA_carriage_SP1214-sc-2277903 RANDOM 98833910;103166878 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065185/ERR1065185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065185/ERR1065185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065185/17059_6#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065185/17059_6#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065185/ERR1065185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065185/ERR1065185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065185/17059_6#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065185/17059_6#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165640422;8953 ERS707660 ERX1145335 GENOMIC 14397914 675436000 2015-10-13 SC_RUN_17059_6#74 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065185/17059_6#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065185/17059_6#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#74 ERR909152 SC_EXP_15841_4#18 228 102e93ca381d7d16a962583a7d906b55;dc0e82a7ebab7ab2ec33a969b977b7e1 1313 1d12a621deca3e852a78246a6b61d635;3f9482e5a8079583ad61ba87ca49d22b SAMEA3208759 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909152/ERR909152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909152/ERR909152_2.fastq.gz 5250112 WGS GPS_ZA_carriage_SP775-sc-2204894 RANDOM 163869370;169517357 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909152/ERR909152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909152/ERR909152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909152/15841_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909152/15841_4#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909152/ERR909152_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909152/ERR909152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909152/15841_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909152/15841_4#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269563501;8490 ERS639861 ERX988407 GENOMIC 13267919 525011200 2015-06-09 SC_RUN_15841_4#18 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909152/15841_4#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909152/15841_4#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#18 ERR909098 SC_EXP_15841_3#59 225 ad9fd67296fc580ed2891323498870ba;6da72920ddcd0015ccc3fa0ccc37680d 1313 6a36afc4d11d9de40e60898b33182751;896dd68f182d1eb65571360206391f88 SAMEA3208705 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909098/ERR909098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909098/ERR909098_2.fastq.gz 4698038 WGS GPS_ZA_carriage_SP697-sc-2204839 RANDOM 143860766;147803726 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909098/ERR909098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909098/ERR909098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909098/15841_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909098/15841_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909098/ERR909098_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909098/ERR909098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909098/15841_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909098/15841_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234064436;7547 ERS639807 ERX988353 GENOMIC 13267819 469803800 2015-06-09 SC_RUN_15841_3#59 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909098/15841_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909098/15841_3#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#59 ERR979933 SC_EXP_16288_3#60 234 563e059b38069acb7251bff2bd23357d;f1e63e28d8d38c834494c93e744d0501 1313 47d49d6bda631341eaed0588d0cfd505;a54bf0588b69e8937a14ebc6b5ec207a SAMEA3232403 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979933/ERR979933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979933/ERR979933_2.fastq.gz 4402874 WGS GPS_NP_2170-sc-2205321 RANDOM 143404351;140645821 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979933/ERR979933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979933/ERR979933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979933/16288_3#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979933/16288_3#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979933/ERR979933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979933/ERR979933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979933/16288_3#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979933/16288_3#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 229092336;7161 ERS653614 ERX1056805 GENOMIC 13296179 440287400 2015-08-12 SC_RUN_16288_3#60 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979933/16288_3#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979933/16288_3#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#60 ERR884373 SC_EXP_15682_1#75 218 60e0b67ef6502c02e27776c711213c82;1c8e8e6e6c21822a248f8dcd17bde46f 1313 bc05486e0bf73d09c8b7252e477b2bc1;d31fa8ddac2dd5386825a718fd700469 SAMEA3176075 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884373/ERR884373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884373/ERR884373_2.fastq.gz 3963642 WGS GPS_PL_210_11-sc-2191132 RANDOM 128275841;132478097 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884373/ERR884373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884373/ERR884373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884373/15682_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884373/15682_1#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884373/ERR884373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884373/ERR884373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884373/15682_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884373/15682_1#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 211597256;6481 ERS629023 ERX963776 GENOMIC 13029537 396364200 2015-05-21 SC_RUN_15682_1#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884373/15682_1#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884373/15682_1#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#75 ERR900650 SC_EXP_15731_8#5 230 c1d9a9664e5d2e6ef1173b1b1f6ae36c;145679651f2b6e49e2ff861f5df883fa 1313 4db770583f6d918d3477372e0d652b20;e49ff343b9b2d2ea67f434e46dbad15f SAMEA3206630 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900650/ERR900650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900650/ERR900650_2.fastq.gz 5181178 WGS GPS_ZA_carriage_SP49-sc-2191563 RANDOM 156403401;162380187 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900650/ERR900650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900650/ERR900650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900650/15731_8#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900650/15731_8#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900650/ERR900650_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900650/ERR900650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900650/15731_8#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900650/15731_8#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258828955;8344 ERS638640 ERX980039 GENOMIC 13208922 518117800 2015-05-26 SC_RUN_15731_8#5 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900650/15731_8#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900650/15731_8#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#5 ERR870016 SC_EXP_15531_4#14 207 66684e3489253d6feab6bb1dda984a8b;d1db0977e9fa4f251bcc9a4482cdcdd1 1313 ea3789b99c4229970852c30775330abc;34b5a5ac197d34ded2d4101fbcd6f6a9 SAMEA3171613 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870016/ERR870016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870016/ERR870016_2.fastq.gz 4224458 WGS GPS_MW_152362-sc-2140007 RANDOM 161208640;153072054 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870016/ERR870016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870016/ERR870016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870016/15531_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870016/15531_4#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870016/ERR870016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870016/ERR870016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870016/15531_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870016/15531_4#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260217964;6901 ERS626004 ERX949617 GENOMIC 12882842 422445800 2015-05-06 SC_RUN_15531_4#14 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870016/15531_4#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870016/15531_4#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#14 ERR862393 SC_EXP_15378_3#40 191 5751ebb132d5d7c33080fec737931bc4;552e885b189a803fe3b6411035fb8475 1313 4d36dc80ac7cfe2def56db048cca328f;be45fac57e04597b211083f150e0b9b6 SAMEA3171075 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862393/ERR862393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862393/ERR862393_2.fastq.gz 4672434 WGS GPS_MW_2022-sc-2139637 RANDOM 158836458;163706588 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862393/ERR862393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862393/ERR862393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862393/15378_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862393/15378_3#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862393/ERR862393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862393/ERR862393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862393/15378_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862393/15378_3#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264269696;7669 ERS625466 ERX942043 GENOMIC 12815474 467243400 2015-04-21 SC_RUN_15378_3#40 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862393/15378_3#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862393/15378_3#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#40 ERR862388 SC_EXP_15378_3#35 191 cfbab533fb666547bce3fa6a2d4d0a11;03ec2298b576cfe0850be832b98d0a9d 1313 4fa9386e8cb1d1ecb5b7abf96b892f53;3aaaebca445e9e5842996f640ff699ab SAMEA3171070 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862388/ERR862388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862388/ERR862388_2.fastq.gz 4651478 WGS GPS_MW_1865-sc-2139632 RANDOM 158548829;163658939 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862388/ERR862388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862388/ERR862388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862388/15378_3#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862388/15378_3#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862388/ERR862388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862388/ERR862388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862388/15378_3#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862388/15378_3#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264052287;7632 ERS625461 ERX942038 GENOMIC 12815414 465147800 2015-04-21 SC_RUN_15378_3#35 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862388/15378_3#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862388/15378_3#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#35 ERR862418 SC_EXP_15378_3#65 191 d892b02064fc1310f237b8a034527ede;7d79f27ff86bac6ed3900273480a91bc 1313 d674806cf683420a68e8bc9765e19a11;c20a5ff2f038cbdc64a7af9e215f1621 SAMEA3171102 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862418/ERR862418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862418/ERR862418_2.fastq.gz 4259848 WGS GPS_MW_1727-sc-2139665 RANDOM 145104907;149440066 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862418/ERR862418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862418/ERR862418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862418/15378_3#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862418/15378_3#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862418/ERR862418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862418/ERR862418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862418/15378_3#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862418/15378_3#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241345161;7008 ERS625493 ERX942068 GENOMIC 12815394 425984800 2015-04-21 SC_RUN_15378_3#65 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862418/15378_3#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862418/15378_3#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#65 ERR862497 SC_EXP_15378_4#49 205 8d99798eeb4f485a3582fbe8bf842a3d;11a201c27c973cfb714d174edc1b2431 1313 8dedae2e82ecf4b60a7f3948b502a50b;13658dba2bddd1d15d8bd37eacec2762 SAMEA3171185 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862497/ERR862497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862497/ERR862497_2.fastq.gz 3692404 WGS GPS_MW_1869-sc-2139749 RANDOM 121642355;124680018 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862497/ERR862497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862497/ERR862497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862497/15378_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862497/15378_4#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862497/ERR862497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862497/ERR862497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862497/15378_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862497/15378_4#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 199514128;6110 ERS625576 ERX942147 GENOMIC 12826871 369240400 2015-04-21 SC_RUN_15378_4#49 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862497/15378_4#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862497/15378_4#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#49 ERR054385 SC_EXP_6736_7#20 243 501754bdc09ed015fa9a8eb8c237bdd5 1313 87493209dda94c680233a4545795684b;7ccc9bd665336d5dc523b29fda9f700b SAMEA1025298 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054385/ERR054385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054385/ERR054385_2.fastq.gz 6921649 WGS SMRU1292-sc-2011-01-27-1061505 RANDOM 355437076;377547726 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054385/ERR054385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054385/ERR054385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054385/6736_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054385/ERR054385_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054385/ERR054385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054385/6736_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 930947745 ERS020802 ERX031431 GENOMIC 3308139 1038247350 2011-11-15 SC_RUN_6736_7#20 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054385/6736_7#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054538 SC_EXP_6755_2#6 204 a804a0d0beb340f0035827a220f85dbb 1313 05d35c685ad67ac78c480274074a7e13;01cd52579e9e2f506ab481caffca5915 SAMEA1024981 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054538/ERR054538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054538/ERR054538_2.fastq.gz 4102876 WGS SMRU798-sc-2011-01-27-1060987 RANDOM 196701710;200109872 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054538/ERR054538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054538/ERR054538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054538/6755_2#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054538/ERR054538_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054538/ERR054538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054538/6755_2#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 516101950 ERS020308 ERX031584 GENOMIC 3152307 615431400 2011-11-15 SC_RUN_6755_2#6 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054538/6755_2#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054521 SC_EXP_6755_1#13 221 52eca63a9bb4873f81a70665253a965f 1313 c0610247105cf7e51f7734948abb6a89;4f4a1c08b51abaf2a8acf48dfca2bc32 SAMEA1024893 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054521/ERR054521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054521/ERR054521_2.fastq.gz 2945551 WGS SMRU781-sc-2011-01-27-1060970 RANDOM 145783475;145476300 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054521/ERR054521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054521/ERR054521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054521/6755_1#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054521/ERR054521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054521/ERR054521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054521/6755_1#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 377308445 ERS020291 ERX031567 GENOMIC 3152290 441832650 2011-11-15 SC_RUN_6755_1#13 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054521/6755_1#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051656 SC_EXP_6731_6#6 228 8659badf3b099db3707405cd84dbd999 1313 e053dc7ab25e86bebf283d549a05351a;621b7404d6766e11bdc317c6b3281ae8 SAMEA1024963 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051656/ERR051656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051656/ERR051656_2.fastq.gz 1866747 WGS SMRU1110-sc-2011-01-27-1061323 RANDOM 100918670;104582666 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051656/ERR051656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051656/ERR051656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051656/6731_6#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051656/ERR051656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051656/ERR051656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051656/6731_6#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 266633694 ERS020620 ERX028704 GENOMIC 3246385 280012050 2011-11-02 SC_RUN_6731_6#6 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051656/6731_6#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051503 SC_EXP_6730_6#21 233 49df9def53571dee3de1b74110914fdf 1313 11117026d497d113addd69acb151c302;f6cb432618baa60ea064e7b721255617 SAMEA1024555 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051503/ERR051503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051503/ERR051503_2.fastq.gz 1251606 WGS SMRU693-sc-2011-01-27-1060882 RANDOM 69975738;73116060 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051503/ERR051503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051503/ERR051503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051503/6730_6#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051503/ERR051503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051503/ERR051503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051503/6730_6#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 183495205 ERS020203 ERX028551 GENOMIC 3100195 187740900 2011-11-02 SC_RUN_6730_6#21 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051503/6730_6#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR056883 SC_EXP_6805_7#9 233 afb12c5f94bde338bbf6757d652761aa 1313 197441bf8049c6c45a3acb2268ca7ea4;e88a58656e66728d9b3b9df4cf0eca44 SAMEA1026076 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056883/ERR056883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056883/ERR056883_2.fastq.gz 6255641 WGS SMRU1738-sc-2011-01-27-1061951 RANDOM 281453803;291689432 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056883/ERR056883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056883/ERR056883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056883/6805_7#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056883/ERR056883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056883/ERR056883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056883/6805_7#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 734508229 ERS021248 ERX034727 GENOMIC 3481241 938346150 2012-03-22 SC_RUN_6805_7#9 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056883/6805_7#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056843 SC_EXP_6805_5#17 232 aedb5b29c9e123dfdcb0fde6dc8294a8 1313 ccc03410555ec05fa4fd6fc01aeaeef0;9d564c7a008e4c692f5ccc537b6a960a SAMEA1025610 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056843/ERR056843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056843/ERR056843_2.fastq.gz 6485622 WGS SMRU1697-sc-2011-01-27-1061910 RANDOM 328998614;341501278 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056843/ERR056843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056843/ERR056843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056843/6805_5#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056843/ERR056843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056843/ERR056843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056843/6805_5#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 852419791 ERS021207 ERX034687 GENOMIC 3481186 972843300 2011-11-29 SC_RUN_6805_5#17 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056843/6805_5#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR057977 SC_EXP_6823_7#4 247 55ff6996b6b7cd9c964bde5e62a43d09 1313 20bd7032317c2b7ad64e23a49335a748;bad1d736dc507cacada504ec3b1d4d3a SAMEA1025832 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057977/ERR057977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057977/ERR057977_2.fastq.gz 2063014 WGS SMRU1996-sc-2011-01-27-1062209 RANDOM 130857977;125747117 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057977/ERR057977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057977/ERR057977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057977/6823_7#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057977/ERR057977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057977/ERR057977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057977/6823_7#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 328404015 ERS021506 ERX035823 GENOMIC 3469225 309452100 2012-03-22 SC_RUN_6823_7#4 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057977/6823_7#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR066234 SC_EXP_6983_3#59 241 90330d42fd2b4386a13776a179882310 1313 3f11db67c1a3fb7bdd2fc4b3d27ac71d;95bd7b1eb43436fa9f84fb9ae52e3ee0 SAMEA1026031 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066234/ERR066234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066234/ERR066234_2.fastq.gz 3168070 WGS SMRU2267-sc-2011-01-27-1062480 RANDOM 224527346;227013437 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066234/ERR066234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066234/ERR066234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066234/6983_3#59.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066234/ERR066234_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066234/ERR066234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066234/6983_3#59.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 562956412 ERS021776 ERX044097 GENOMIC 3594887 475210500 2012-01-10 SC_RUN_6983_3#59 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066234/6983_3#59.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066211 SC_EXP_6983_2#12 239 dc83d05d7930e4d4d06e10b0de6634b5 1313 308a9c8ee1f289f7d9f53fe727bb76ab;ee646eb7b1ad3557f41c8f4654f6f96c SAMEA1025880 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066211/ERR066211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066211/ERR066211_2.fastq.gz 3420584 WGS SMRU2220-sc-2011-01-27-1062433 RANDOM 243599959;244034103 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066211/ERR066211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066211/ERR066211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066211/6983_2#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066211/ERR066211_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066211/ERR066211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066211/6983_2#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 614286969 ERS021729 ERX044074 GENOMIC 3593284 513087600 2012-01-10 SC_RUN_6983_2#12 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066211/6983_2#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR065290 SC_EXP_6925_1#52 245 c56e22997e433c3415e9cd9baf8c4885 1313 a5a177cb6292ca9b17d234110fdc5d7a;9a096d9f337949f4d7f3290a5970ed52 SAMEA1032449 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065290/ERR065290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065290/ERR065290_2.fastq.gz 4157989 WGS 3033-sc-2011-08-01T09:42:44Z-1249919 RANDOM 238226292;242072882 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065290/ERR065290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065290/ERR065290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065290/6925_1#52.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065290/ERR065290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065290/ERR065290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065290/6925_1#52.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 614568558 ERS043854 ERX043263 GENOMIC 3610862 623698350 2012-01-05 SC_RUN_6925_1#52 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065290/6925_1#52.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR044910 SC_EXP_6470_5#5 192 b8983f8a2a45242b69313834e3f9b8a5 1313 4cde5c7f87f4cdd07fb9c43bcc1ceab3;1ce6ba9f9673235330ef0df674ca889b SAMEA1026737 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044910/ERR044910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044910/ERR044910_2.fastq.gz 11477078 WGS UoS0218-sc-2011-02-14-1078113 RANDOM 552853255;562413869 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044910/ERR044910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044910/ERR044910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044910/6470_5#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044910/ERR044910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044910/ERR044910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044910/6470_5#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1457739493 ERS023058 ERX022018 GENOMIC 2719140 1721561700 2011-09-06 SC_RUN_6470_5#5 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044910/6470_5#5.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_5#5 ERR047153 SC_EXP_6570_1#8 254 116f6ae7f27175604b5cdfe05b318f7a 1313 7321c2d8e6b4953c716a5f57da976d24;a0b196546348ad473431f2c45bd834e7 SAMEA1026431 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047153/ERR047153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047153/ERR047153_2.fastq.gz 6819414 WGS UoS5263-sc-2011-03-11-1099010 RANDOM 378884471;395808129 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047153/ERR047153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047153/ERR047153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047153/6570_1#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047153/ERR047153_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047153/ERR047153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047153/6570_1#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 970202022 ERS025200 ERX024215 GENOMIC 2744185 1022912100 2011-09-27 SC_RUN_6570_1#8 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047153/6570_1#8.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6570_1#8 ERR047132 SC_EXP_6569_8#8 247 019ad54f4d4aa113238c054e686b69a6 1313 b00ac546c07eebaabca70e892ebde5fb;12992442ebb77b9f93edcb1f602801ff SAMEA1026581 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047132/ERR047132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047132/ERR047132_2.fastq.gz 3220653 WGS UoS5066-sc-2011-03-11-1098945 RANDOM 195574710;209290901 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047132/ERR047132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047132/ERR047132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047132/6569_8#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047132/ERR047132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047132/ERR047132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047132/6569_8#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 524417009 ERS025135 ERX024194 GENOMIC 2744164 483097950 2011-09-27 SC_RUN_6569_8#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047132/6569_8#8.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_8#8 ERR044863 SC_EXP_6470_3#6 187 33ec126a2755cde201032ef820f4433d 1313 a403bf92f1782bd0dead0fa10496ef2e;82b96b4a716ec070721a35096ce56947 SAMEA1026608 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044863/ERR044863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044863/ERR044863_2.fastq.gz 6851704 WGS UoS0023-sc-2011-02-14-1078066 RANDOM 339366610;354584102 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044863/ERR044863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044863/ERR044863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044863/6470_3#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044863/ERR044863_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044863/ERR044863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044863/6470_3#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 910633989 ERS023011 ERX021971 GENOMIC 2719093 1027755600 2011-09-06 SC_RUN_6470_3#6 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044863/6470_3#6.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#6 ERR045018 SC_EXP_6472_7#17 249 b8083fb778208d82457198eff4603fe2 1313 0172e96c0d5a9490ce4da1ebc4bea323;5333466ef82ddeb213785b096dd31769 SAMEA1026671 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045018/ERR045018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045018/ERR045018_2.fastq.gz 6562484 WGS UoS2227-sc-2011-02-14-1078221 RANDOM 312576579;322153037 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045018/ERR045018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045018/ERR045018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045018/6472_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045018/ERR045018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045018/ERR045018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045018/6472_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 799102678 ERS023167 ERX022126 GENOMIC 2732389 984372600 2011-09-06 SC_RUN_6472_7#17 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045018/6472_7#17.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_7#17 ERR316743 SC_EXP_9789_3#81 207 21f2546e7bbb916807a9f2719212129e 1313 2dce34d5a59f5da3553c7f3fe92c75a6;4289131f151aa555ecd7eaee958112d2 SAMEA2050520 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316743/ERR316743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316743/ERR316743_2.fastq.gz 1282414 WGS 1017-sc-2013-02-18T14:44:37Z-1561873 RANDOM 78699459;86293899 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316743/ERR316743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316743/ERR316743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316743/9789_3#81.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316743/ERR316743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316743/ERR316743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316743/9789_3#81.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 227898998 ERS215089 ERX289891 GENOMIC 7066843 256482800 2013-07-22 SC_RUN_9789_3#81 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316743/9789_3#81.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_3#81 ERR925105 SC_EXP_15995_1#80 231 d11af91a40ea1e8ce669f3959b0eb284;552f0c538230758a483e811ebdecfd50 1313 ac0e1eaab4a577b516e6e500b7d790f5;b479a4f6b07c7f6fd57c645700b9d9eb SAMEA3206895 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925105/ERR925105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925105/ERR925105_2.fastq.gz 1861604 WGS GPS_ZA_carriage_SP189-sc-2191830 RANDOM 56269046;58282088 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925105/ERR925105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925105/ERR925105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925105/15995_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925105/15995_1#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925105/ERR925105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925105/ERR925105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925105/15995_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925105/15995_1#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92347612;3178 ERS638905 ERX1004380 GENOMIC 13241061 186160400 2015-06-23 SC_RUN_15995_1#80 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925105/15995_1#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925105/15995_1#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#80 ERR316934 SC_EXP_9789_5#90 239 5699140db299e57aaa16e020e57e6815 1313 b43ae9ba30df1adeed694a4785792b59;fc3f6a9674e665305ca3eadb09fdff50 SAMEA2052486 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316934/ERR316934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316934/ERR316934_2.fastq.gz 1475348 WGS 2371-sc-2013-02-18T14:48:19Z-1562077 RANDOM 93616914;100815065 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316934/ERR316934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316934/ERR316934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316934/9789_5#90.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316934/ERR316934_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316934/ERR316934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316934/9789_5#90.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267445118 ERS215290 ERX290082 GENOMIC 7125942 295069600 2013-07-22 SC_RUN_9789_5#90 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316934/9789_5#90.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#90 ERR925109 SC_EXP_15995_1#84 231 9cfba96099dd3d34fb1ad9c7a542cf49;185a5b4537318e3cab91afa0fc4221c7 1313 45742f12584cd82ab642655f950525c1;14e0b1b3a3feaec85bcee8c399817dbe SAMEA3206899 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925109/ERR925109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925109/ERR925109_2.fastq.gz 1680364 WGS GPS_ZA_carriage_SP142-sc-2191834 RANDOM 50622062;52561564 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925109/ERR925109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925109/ERR925109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925109/15995_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925109/15995_1#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925109/ERR925109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925109/ERR925109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925109/15995_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925109/15995_1#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83465829;2888 ERS638909 ERX1004384 GENOMIC 13241014 168036400 2015-06-23 SC_RUN_15995_1#84 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925109/15995_1#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925109/15995_1#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#84 ERR925097 SC_EXP_15995_1#72 231 76229410e059a6cce11e3b8aca562cc7;a57fb8f7f15281ad18e984330b4bff19 1313 6d4e54bd4f7e403610b9af83d5f6e9ac;f0914749fae03a08fdba804e205c17f5 SAMEA3206887 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925097/ERR925097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925097/ERR925097_2.fastq.gz 1909446 WGS GPS_ZA_carriage_SP188-sc-2191822 RANDOM 57541220;59785277 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925097/ERR925097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925097/ERR925097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925097/15995_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925097/15995_1#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925097/ERR925097_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925097/ERR925097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925097/15995_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925097/15995_1#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 94852128;3256 ERS638897 ERX1004372 GENOMIC 13241060 190944600 2015-06-23 SC_RUN_15995_1#72 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925097/15995_1#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925097/15995_1#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#72 ERR913070 SC_EXP_15873_1#12 206 d7815c4cc6ce0e1d756a85c8197e3312;f9dc106438bfe4f3bf802e3737520aa4 1313 b53076e612cb4f6fea2a1c6f7f7272f4;7f4b8368fe96231ca6b1d0f38ff07d91 SAMEA3207093 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913070/ERR913070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913070/ERR913070_2.fastq.gz 5408070 WGS GPS_ZA_carriage_SP513-sc-2192030 RANDOM 168757744;175162206 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913070/ERR913070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913070/ERR913070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913070/15873_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913070/15873_1#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913070/ERR913070_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913070/ERR913070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913070/15873_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913070/15873_1#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280137055;8748 ERS639103 ERX992194 GENOMIC 13227571 540807000 2015-06-17 SC_RUN_15873_1#12 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913070/15873_1#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913070/15873_1#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#12 ERR909129 SC_EXP_15841_3#90 225 015405ba4367be7d9c5fb78230c5240c;2493f6b2a18698917ff33bca2e48b7aa 1313 b9385c9bb1dda319e4648f0306d8f377;bc3421451af32b8ee41a9974b87c8c2b SAMEA3208736 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909129/ERR909129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909129/ERR909129_2.fastq.gz 4850464 WGS GPS_ZA_carriage_SP689-sc-2204870 RANDOM 147817165;151639764 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909129/ERR909129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909129/ERR909129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909129/15841_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909129/15841_3#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909129/ERR909129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909129/ERR909129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909129/15841_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909129/15841_3#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240518543;7787 ERS639838 ERX988384 GENOMIC 13267811 485046400 2015-06-09 SC_RUN_15841_3#90 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909129/15841_3#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909129/15841_3#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#90 ERR909050 SC_EXP_15841_3#11 225 8a5d3833d1b7f4bcd9d80d2b34f24f8a;0956db040550ad69282c3fc662704d27 1313 6dd0ceac623aab14352609af74d58709;ade047e35ceebc8d01b0c738a4754be3 SAMEA3208657 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909050/ERR909050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909050/ERR909050_2.fastq.gz 4554342 WGS GPS_ZA_carriage_SP691-sc-2204791 RANDOM 136318901;138558593 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909050/ERR909050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909050/ERR909050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909050/15841_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909050/15841_3#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909050/ERR909050_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909050/ERR909050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909050/15841_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909050/15841_3#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 220915655;7470 ERS639759 ERX988305 GENOMIC 13267813 455434200 2015-06-09 SC_RUN_15841_3#11 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909050/15841_3#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909050/15841_3#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#11 ERR908850 SC_EXP_15841_1#1 206 7d73e4077a34ea095a49ba0400612cef;0193b2e9c808f724937dd2a1ee44233d 1313 823141c2ed9db57f671491e6e4092018;9f18297f4594459754b1dc1c74bc9545 SAMEA3206755 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908850/ERR908850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908850/ERR908850_2.fastq.gz 6341666 WGS GPS_ZA_carriage_SP191-sc-2191689 RANDOM 195827711;201611697 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908850/ERR908850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908850/ERR908850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908850/15841_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908850/15841_1#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908850/ERR908850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908850/ERR908850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908850/15841_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908850/15841_1#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322428679;10268 ERS638765 ERX988105 GENOMIC 13227437 634166600 2015-06-09 SC_RUN_15841_1#1 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908850/15841_1#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908850/15841_1#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#1 ERR909010 SC_EXP_15841_2#66 229 fb74c31e64ffc47dfff537e8d20a9964;b2a2f959099732a18606726e020977b9 1313 f123317641dc03065ee9eb998e0aef9d;4dba32432d00373bcd4da8799b377fae SAMEA3207262 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909010/ERR909010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909010/ERR909010_2.fastq.gz 5201054 WGS GPS_ZA_carriage_SP591-sc-2192200 RANDOM 167923225;172276133 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909010/ERR909010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909010/ERR909010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909010/15841_2#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909010/15841_2#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909010/ERR909010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909010/ERR909010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909010/15841_2#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909010/15841_2#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276175032;8349 ERS639272 ERX988265 GENOMIC 13265100 520105400 2015-06-09 SC_RUN_15841_2#66 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909010/15841_2#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909010/15841_2#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#66 ERR909311 SC_EXP_15841_5#82 223 e6b066b38202030e65b82c15aa1409be;573a0b17aed7d153f2ff48f69f599565 1313 647aa81d3b598d6b960fac3ed948f32e;48bf02b55b709c22663b12ea88474a56 SAMEA3206992 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909311/ERR909311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909311/ERR909311_2.fastq.gz 4731030 WGS GPS_ZA_carriage_SP308-sc-2191928 RANDOM 162866431;170334294 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909311/ERR909311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909311/ERR909311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909311/15841_5#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909311/15841_5#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909311/ERR909311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909311/ERR909311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909311/15841_5#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909311/15841_5#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270766139;7190 ERS639002 ERX988566 GENOMIC 13275945 473103000 2015-06-09 SC_RUN_15841_5#82 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909311/15841_5#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909311/15841_5#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#82 ERR774270 SC_EXP_14913_6#81 223 45d432e4804687165adde7c4cf5e9f7f;b0d5166027acfcb01add419f33e4b30f 1313 e803372e96d4a3d610ec6b9d5eaacc94;beb6152be4c2ed141091e9bdbab6a019 SAMEA2814576 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774270/ERR774270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774270/ERR774270_2.fastq.gz 4052648 WGS GPS_ZA_2771-sc-2138372 RANDOM 125962794;131103392 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774270/ERR774270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774270/ERR774270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774270/14913_6#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774270/14913_6#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774270/ERR774270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774270/ERR774270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774270/14913_6#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774270/14913_6#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 207033417;6514 ERS566944 ERX717149 GENOMIC 12334806 405264800 2015-03-03 SC_RUN_14913_6#81 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774270/14913_6#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774270/14913_6#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#81 ERR774490 SC_EXP_14936_4#17 220 45db3fc8a9b8ca2a838a9e2ad66cb4cf;442fa51df1821187c869726a57a1b016 1313 f9fb5d06ca8c7712f0e7dcb744d4c1fc;363a85595f5d6bf614bdbee3149bbd15 SAMEA2814322 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774490/ERR774490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774490/ERR774490_2.fastq.gz 4671776 WGS GPS_ZA_2534-sc-2138116 RANDOM 169924921;170036540 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774490/ERR774490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774490/ERR774490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774490/14936_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774490/14936_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774490/ERR774490_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774490/ERR774490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774490/14936_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774490/14936_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283921635;7632 ERS566690 ERX717369 GENOMIC 12347920 467177600 2015-03-03 SC_RUN_14936_4#17 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774490/14936_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774490/14936_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#17 ERR774636 SC_EXP_14936_5#72 211 6d74374cad085919875609099aae67a9;693ccac1d302b4417ac7820fa09e67f5 1313 f31f8a6fd7a16f492e896c6692bbfdb0;d38be10f1f384f08e64e242254817dd2 SAMEA2783732 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774636/ERR774636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774636/ERR774636_2.fastq.gz 5313508 WGS GPS_MW_4781_R1-sc-2022227 RANDOM 192208519;194523271 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774636/ERR774636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774636/ERR774636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774636/14936_5#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774636/14936_5#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774636/ERR774636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774636/ERR774636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774636/14936_5#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774636/14936_5#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322933098;8561 ERS553477 ERX717515 GENOMIC 12403556 531350800 2015-03-03 SC_RUN_14936_5#72 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774636/14936_5#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774636/14936_5#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#72 ERR774190 SC_EXP_14913_6#1 223 da526acdca0a3eb597dc50ba6f2bee39;55527523b9449d16b75a87316c869ee2 1313 b7ea3bed9d0ea37cebd1a2d763f4254a;b46993171484e0655fb4860c2b8ba719 SAMEA2814496 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774190/ERR774190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774190/ERR774190_2.fastq.gz 4496026 WGS GPS_ZA_2708-sc-2138292 RANDOM 141367723;147097721 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774190/ERR774190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774190/ERR774190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774190/14913_6#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774190/14913_6#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774190/ERR774190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774190/ERR774190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774190/14913_6#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774190/14913_6#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 235598295;7173 ERS566864 ERX717069 GENOMIC 12334796 449602600 2015-03-03 SC_RUN_14913_6#1 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774190/14913_6#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774190/14913_6#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#1 ERR742601 SC_EXP_14673_4#5 209 05bb44502ed30e9fa7c127779c767405;9958bcc7f317fb6ba59037dcc7165e98 1313 448cda520997efacfa94996e8238b033;74b110597e8e1f25648a5f18744170b5 SAMEA2796698 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742601/ERR742601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742601/ERR742601_2.fastq.gz 5931292 WGS GPS_US_9314_04-sc-2138680 RANDOM 188494628;193749439 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742601/ERR742601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742601/ERR742601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742601/14673_4#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742601/14673_4#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742601/ERR742601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742601/ERR742601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742601/14673_4#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742601/14673_4#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312892006;9599 ERS558309 ERX686284 GENOMIC 12062017 593129200 2015-01-27 SC_RUN_14673_4#5 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742601/14673_4#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742601/14673_4#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#5 ERR742603 SC_EXP_14673_4#7 209 7acd1cdd38471ab04335f6821f8d39d1;0aa66a7b451927ba6327343d33219f96 1313 81f6b7d4f320a9739d05bf3b547f8715;32aed33aff1ff21052263330a7d3a37a SAMEA2796700 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742603/ERR742603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742603/ERR742603_2.fastq.gz 6500012 WGS GPS_US_3318_02-sc-2138682 RANDOM 207040916;213787730 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742603/ERR742603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742603/ERR742603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742603/14673_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742603/14673_4#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742603/ERR742603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742603/ERR742603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742603/14673_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742603/14673_4#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 344060656;10435 ERS558311 ERX686286 GENOMIC 12062041 650001200 2015-01-27 SC_RUN_14673_4#7 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742603/14673_4#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742603/14673_4#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#7 ERR730303 SC_EXP_14520_5#70 224 34d2a99009fd11780d588ca45a60aa5d;c159d01b104e9f7fc80db9ab3df7deec 1313 2dc0a620f9292fa5baea982aca4cc2cc;20fd33f8bce4dace11a37d43a16213e0 SAMEA2696491 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730303/ERR730303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730303/ERR730303_2.fastq.gz 4858256 WGS GPS_GM_0683-sc-2021946 RANDOM 177458070;180313082 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730303/ERR730303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730303/ERR730303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730303/14520_5#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730303/14520_5#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730303/ERR730303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730303/ERR730303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730303/14520_5#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730303/14520_5#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293846252;8013 ERS525070 ERX674249 GENOMIC 11982908 485825600 2015-01-14 SC_RUN_14520_5#70 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730303/14520_5#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730303/14520_5#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#70 ERR730779 SC_EXP_14566_5#19 233 96af92cde8f4881f1b633adf1e4b9c2a;f1e7a08a932b3e73248db28b063736f5 1313 0dd4a097abbb35864f3f9aad13f3b9c6;882948d1286cc8b0847dc323ec74c580 SAMEA2658645 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730779/ERR730779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730779/ERR730779_2.fastq.gz 3975090 WGS GPS_ZA_1776-sc-2021253 RANDOM 112382445;114022101 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730779/ERR730779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730779/ERR730779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730779/14566_5#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730779/14566_5#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730779/ERR730779_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730779/ERR730779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730779/14566_5#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730779/14566_5#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 181550477;6516 ERS508673 ERX674725 GENOMIC 11838951 397509000 2015-01-14 SC_RUN_14566_5#19 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730779/14566_5#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730779/14566_5#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#19 ERR662443 SC_EXP_13710_2#55 196 bf24807302be6ff595d6972052e48673;c119cee554c3ae18fadf9f8825dab056 1313 f09f4cd9febe8d717082a98e7307754f;4ca2ab3727682d74f77a1186b2e93167 SAMEA2521739 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662443/ERR662443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662443/ERR662443_2.fastq.gz 4023566 WGS 2012212039-sc-1947032 RANDOM 138341183;147142041 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662443/ERR662443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662443/ERR662443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662443/13710_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662443/13710_2#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662443/ERR662443_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662443/ERR662443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662443/13710_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662443/13710_2#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246057120;6283 ERS455279 ERX618719 GENOMIC 11100517 402356600 2014-10-28 SC_RUN_13710_2#55 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662443/13710_2#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662443/13710_2#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#55 ERR662392 SC_EXP_13710_2#4 196 47b6f0b50cb32725578c6143456a579d;ce5785d55b2c77230fe2fe372bf101f6 1313 dbb516614aecd597cd9973a66fc76d02;3c1a375b236fdc2e9cf3711bae835a54 SAMEA2521559 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662392/ERR662392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662392/ERR662392_2.fastq.gz 9611336 WGS 2012214376-sc-1946851 RANDOM 316195212;331061287 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662392/ERR662392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662392/ERR662392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662392/13710_2#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662392/13710_2#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662392/ERR662392_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662392/ERR662392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662392/13710_2#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662392/13710_2#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 544779154;15531 ERS455099 ERX618668 GENOMIC 11100475 961133600 2014-10-28 SC_RUN_13710_2#4 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662392/13710_2#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662392/13710_2#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#4 ERR662367 SC_EXP_13710_1#51 186 a9bc06902e54387fea8a9b73f201d44b;009ac9235ddb5c846bcd42b166e2f2a3 1313 4665b36fcaf7110e8e805f3ffb48acd1;4b26ae1e3547eda1f897fee493a56b5f SAMEA2521474 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662367/ERR662367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662367/ERR662367_2.fastq.gz 5119132 WGS 2010200662-sc-1946771 RANDOM 168004351;177021100 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662367/ERR662367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662367/ERR662367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662367/13710_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662367/13710_1#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662367/ERR662367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662367/ERR662367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662367/13710_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662367/13710_1#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 290757835;8133 ERS455014 ERX618643 GENOMIC 11100372 511913200 2014-10-28 SC_RUN_13710_1#51 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662367/13710_1#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662367/13710_1#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#51 ERR662423 SC_EXP_13710_2#35 196 17e1a8c749fd9c58b856fa2475ad7341;e5b23e544dfb630a300ddd376a024729 1313 6f69b7ca2f4c1eb0eed35bee0d52e5cb;6706cabfe8ba059c3072bbd0f6c38fe5 SAMEA2521703 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662423/ERR662423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662423/ERR662423_2.fastq.gz 7501934 WGS 2012211927-sc-1946996 RANDOM 250466830;262732701 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662423/ERR662423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662423/ERR662423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662423/13710_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662423/13710_2#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662423/ERR662423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662423/ERR662423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662423/13710_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662423/13710_2#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 439289384;11989 ERS455243 ERX618699 GENOMIC 11100467 750193400 2014-10-28 SC_RUN_13710_2#35 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662423/13710_2#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662423/13710_2#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#35 ERR662398 SC_EXP_13710_2#10 196 81e12a4fe6f9f6b56514866bef48fbc8;730c859727a340623fa7dc2494bfc373 1313 54b49b88c570cc72e195e10c1a7eae53;9bd02dfca66265828907a4236c093018 SAMEA2521580 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662398/ERR662398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662398/ERR662398_2.fastq.gz 5053372 WGS 2012218005-sc-1946872 RANDOM 166063853;174182040 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662398/ERR662398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662398/ERR662398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662398/13710_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662398/13710_2#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662398/ERR662398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662398/ERR662398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662398/13710_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662398/13710_2#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283094185;8360 ERS455120 ERX618674 GENOMIC 11100452 505337200 2014-10-28 SC_RUN_13710_2#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662398/13710_2#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662398/13710_2#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#10 ERR600105 SC_EXP_13414_1#35 292 dc47ece47d72f2a2356893b14e9ddeb2;b8a93c39a6c2aca48dd6a1f150e348ac 1313 aea87c1b21d06debb3f9324211ec3ed2;f83de3b8118ceb4eaf1f80286bcf4ec3 SAMEA2521485 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600105/ERR600105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600105/ERR600105_2.fastq.gz 6751276 WGS 2010200787-sc-1946782 RANDOM 225157095;232066542 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600105/ERR600105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600105/ERR600105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600105/13414_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600105/13414_1#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600105/ERR600105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600105/ERR600105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600105/13414_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600105/13414_1#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 382524645;11073 ERS455025 ERX556934 GENOMIC 10524137 675127600 2014-09-16 SC_RUN_13414_1#35 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600105/13414_1#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600105/13414_1#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#35 ERR568674 SC_EXP_12837_3#73 231 6cc750772f296a82636610e61bc9e58c;94bcf942446650030d1fb5bf4f170ecd 1313 7c15cb1795ec64a1ad7286b7470fd6da;6da73c67c6cb542cc0ad838dd185e806 SAMEA2434661 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568674/ERR568674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568674/ERR568674_2.fastq.gz 4850822 WGS SA_GPS_SP556-sc-1895726 RANDOM 156973575;159707536 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568674/ERR568674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568674/ERR568674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568674/12837_3#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568674/12837_3#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568674/ERR568674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568674/ERR568674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568674/12837_3#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568674/12837_3#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259814034;7957 ERS428838 ERX527663 GENOMIC 9986299 485082200 2014-07-23 SC_RUN_12837_3#73 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568674/12837_3#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568674/12837_3#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#73 ERR568584 SC_EXP_12837_2#67 237 ca7d6d1c7b67ed47ebedd5ffe5547e41;2a0190678d99439a12caabac649460fe 1313 9f81ef8073825a54ac788b25813492fe;e73d658a0cc1237acb8afbd4a76410bc SAMEA2434567 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568584/ERR568584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568584/ERR568584_2.fastq.gz 5814206 WGS SA_GPS_SP462-sc-1895631 RANDOM 198117113;201810736 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568584/ERR568584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568584/ERR568584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568584/12837_2#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568584/12837_2#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568584/ERR568584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568584/ERR568584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568584/12837_2#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568584/12837_2#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 331312986;9546 ERS428744 ERX527573 GENOMIC 9967220 581420600 2014-07-23 SC_RUN_12837_2#67 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568584/12837_2#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568584/12837_2#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_2#67 ERR563968 SC_EXP_12754_4#25 232 9808d754f6a1d472c4a5f7b18ccc66dd;7252796157d1b8923700af1b5b10ded3 1313 bd90371768a99c2b4bcb466356b5d4bd;b8f6ab4b8034596468dcff101f3f0215 SAMEA2383235 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563968/ERR563968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563968/ERR563968_2.fastq.gz 4548132 WGS 2120109_II-sc-1870487 RANDOM 156772935;160582098 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563968/ERR563968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563968/ERR563968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563968/12754_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563968/12754_4#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563968/ERR563968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563968/ERR563968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563968/12754_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563968/12754_4#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 261684443;7521 ERS409560 ERX522993 GENOMIC 9922207 454813200 2014-07-16 SC_RUN_12754_4#25 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563968/12754_4#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563968/12754_4#25.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#25 ERR559339 SC_EXP_12718_4#73 233 3bf497a45eab49c4eecb39a6faa3674c;40ecf90a0a650ddc314b594678252b48 1313 8a2aa14f0f77c75e2320d5c115bc9727;13d4f90cb39285871f13c5b6f9c58a01 SAMEA2382808 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559339/ERR559339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559339/ERR559339_2.fastq.gz 5258794 WGS 2060375_II-sc-1870055 RANDOM 165003162;172363807 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559339/ERR559339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559339/ERR559339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559339/12718_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559339/12718_4#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559339/ERR559339_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559339/ERR559339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559339/12718_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559339/12718_4#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 278067280;8734 ERS409133 ERX518375 GENOMIC 9918277 525879400 2014-07-10 SC_RUN_12718_4#73 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559339/12718_4#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559339/12718_4#73.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#73 ERR461740 SC_EXP_11861_4#96 224 4c72cd393ca4949aa060408312d343b5;d00188bbbf342e00c76465423aa03ca0 1313 72865054ea34c73aedb7dfd80f8169af;74c650277132fd2a779115adc3a43f17 SAMEA2239042 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461740/ERR461740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461740/ERR461740_2.fastq.gz 3872938 WGS 990589-sc-2013-11-05T12:06:57Z-1750410 RANDOM 121089193;126498915 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461740/ERR461740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461740/ERR461740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461740/11861_4#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461740/11861_4#96.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461740/ERR461740_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461740/ERR461740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461740/11861_4#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461740/11861_4#96.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 201984958;6382 ERS367854 ERX428081 GENOMIC 9016448 387293800 2014-03-18 SC_RUN_11861_4#96 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461740/11861_4#96.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461740/11861_4#96.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#96 ERR461275 SC_EXP_11860_7#86 206 8791841781474e7a9a96c21cd7dcb150;f1fbfa966284214f3242b3bbb96c19aa 1313 6d0c46efd43463af56f0de2837ca7706;3015129342c9130ab30f9306280e26c0 SAMEA2239125 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461275/ERR461275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461275/ERR461275_2.fastq.gz 4778866 WGS 2000305-sc-2013-11-05T12:08:20Z-1750495 RANDOM 153859572;162470983 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461275/ERR461275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461275/ERR461275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461275/11860_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461275/11860_7#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461275/ERR461275_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461275/ERR461275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461275/11860_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461275/11860_7#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 260042989;7833 ERS367937 ERX427616 GENOMIC 9014946 477886600 2014-03-18 SC_RUN_11860_7#86 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461275/11860_7#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461275/11860_7#86.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#86 ERR554922 SC_EXP_12673_6#91 221 d9676628861c1800c4c29ad68fd8227c;7a03b36de72b723b32a892014806d4f7 1313 818dee3c6af9fc14ca30fba527d7bc97;a117665d6c25dc5fb88beef0d0b343d5 SAMEA2382636 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554922/ERR554922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554922/ERR554922_2.fastq.gz 5351998 WGS 990589_II-sc-1869881 RANDOM 175682439;197432260 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554922/ERR554922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554922/ERR554922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554922/12673_6#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554922/12673_6#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554922/ERR554922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554922/ERR554922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554922/12673_6#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554922/12673_6#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 310614215;8840 ERS408961 ERX513991 GENOMIC 9798932 535199800 2014-07-02 SC_RUN_12673_6#91 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554922/12673_6#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554922/12673_6#91.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#91 ERR460918 SC_EXP_11860_4#1 217 701d2a0d0bab3bd609f36e265c0e2d07;2b062ad2d22a5a96e47418fe6e1a48c3 1313 454e6394a842d04ba7d6eaf074b62646;724c4af90ec8c3258905ef8b6934307f SAMEA2238277 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460918/ERR460918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460918/ERR460918_2.fastq.gz 5197438 WGS 2060375-sc-2013-11-05T11:53:52Z-1749635 RANDOM 165216215;173592553 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460918/ERR460918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460918/ERR460918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460918/11860_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460918/11860_4#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460918/ERR460918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460918/ERR460918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460918/11860_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460918/11860_4#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 279210933;8569 ERS367089 ERX427259 GENOMIC 9012436 519743800 2014-03-18 SC_RUN_11860_4#1 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460918/11860_4#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460918/11860_4#1.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#1 ERR461018 SC_EXP_11860_5#13 210 1c0ffb89a4c0a8968113d288f2e8d99d;e57df07d9bcf66a63cca86079c5a53a9 1313 7db70cb14bd8e012bd0d63557f0db4f3;28a79de9a02910fc48c414e96058c1e9 SAMEA2238382 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461018/ERR461018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461018/ERR461018_2.fastq.gz 2077606 WGS 2070510-sc-2013-11-05T11:55:31Z-1749741 RANDOM 55536444;58649982 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461018/ERR461018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461018/ERR461018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461018/11860_5#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461018/11860_5#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461018/ERR461018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461018/ERR461018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461018/11860_5#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461018/11860_5#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 90089292;3496 ERS367194 ERX427359 GENOMIC 9014532 207760600 2014-03-18 SC_RUN_11860_5#13 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461018/11860_5#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461018/11860_5#13.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR054224 SC_EXP_6710_6#3 229 3611773489059d49bd56fd715703cd7b 1313 547d834783baec6ec6789e04bfb251d3;cbd0e4145ea46e4814c923601c7b8253 SAMEA1025568 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054224/ERR054224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054224/ERR054224_2.fastq.gz 8635456 WGS SMRU1347-sc-2011-01-27-1061560 RANDOM 510659182;538900598 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054224/ERR054224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054224/ERR054224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054224/6710_6#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054224/ERR054224_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054224/ERR054224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054224/6710_6#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1306312201 ERS020857 ERX031270 GENOMIC 3348805 1295318400 2011-11-15 SC_RUN_6710_6#3 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054224/6710_6#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR068016 SC_EXP_7001_2#11 224 16a5438a4a0ee11340f745517c869c93 1313 6eee078e2f10c86fb24a64cab2afeea1;0d5820253959d2f68ac810be54699899 SAMEA1032665 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068016/ERR068016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068016/ERR068016_2.fastq.gz 4094558 WGS 3115-sc-2011-08-01T09:43:41Z-1249995 RANDOM 234502598;240767527 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068016/ERR068016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068016/ERR068016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068016/7001_2#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068016/ERR068016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068016/ERR068016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068016/7001_2#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 613746538 ERS043930 ERX045879 GENOMIC 3758179 614183700 2012-01-16 SC_RUN_7001_2#11 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068016/7001_2#11.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR084233 SC_EXP_7038_7#7 246 106df27b9bc954d6be61f0a92383f919 1313 6fb69067e952e158b624c23aa4b05205;f7d7847a67c9d011940cce7b35f8c20a SAMEA1029348 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084233/ERR084233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084233/ERR084233_2.fastq.gz 4917701 WGS SMRU3007-sc-2011-01-27-1063220 RANDOM 316535613;328472718 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084233/ERR084233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084233/ERR084233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084233/7038_7#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084233/ERR084233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084233/ERR084233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084233/7038_7#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1238475480 ERS022517 ERX061999 GENOMIC 3811760 737655150 2012-02-07 SC_RUN_7038_7#7 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084233/7038_7#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR072207 SC_EXP_7054_5#10 231 72ccabde1be030ea5ab9d3f659fc84e6 1313 cae0e3bdca0ce8c45c9fb05b404eb51b;ffa25330c678ba5587cd284cecbfdc4d SAMEA1029188 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072207/ERR072207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072207/ERR072207_2.fastq.gz 4090020 WGS SMRU3058-sc-2011-01-27-1063271 RANDOM 250736878;263476879 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072207/ERR072207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072207/ERR072207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072207/7054_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072207/ERR072207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072207/ERR072207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072207/7054_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 648696278 ERS022568 ERX049973 GENOMIC 3888002 613503000 2012-01-31 SC_RUN_7054_5#10 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072207/7054_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR2305232 SC_EXP_22695_3#191 422 0c1da595e771f8e57b723ae5c56b4af8;b13b5d8bba2fe7e3a5591ef78152b00a 1313 e10c6ab79398181659e9486acda003a9;8e5e98d81392c0be4c630063446ed41c SAMEA104034875 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305232/ERR2305232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305232/ERR2305232_2.fastq.gz 1907148 WGS fa5ba530-13c3-11e7-942b-3c4a9275d6c8 RANDOM 51092253;68808684 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305232/ERR2305232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305232/ERR2305232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305232/22695_3#191.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305232/22695_3#191.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305232/ERR2305232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305232/ERR2305232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305232/22695_3#191.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305232/22695_3#191.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 88061823;3274 ERS1698768 ERX2356542 GENOMIC DN477146R:A1 287979348 2018-02-16 SC_RUN_22695_3#191 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305232/22695_3#191.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305232/22695_3#191.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808843 ERR1191865 SC_EXP_17794_7#43 458 48820c4088182d878c9e619122adae26;7263a6628124a89337a06db7cb1107cf 1313 58d23587b67d37db247c790289aedf7a;e8b96b748f5e4be81c5e5c617ded5c3d SAMEA3381676 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191865/ERR1191865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191865/ERR1191865_2.fastq.gz 3109942 WGS GPS_GM_2187-sc-2279588 RANDOM 62003880;62179334 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191865/ERR1191865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191865/ERR1191865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191865/17794_7#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191865/17794_7#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191865/ERR1191865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191865/ERR1191865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191865/17794_7#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191865/17794_7#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96470042;5208 ERS719935 ERX1265249 GENOMIC 14934760 388742750 2015-12-17 SC_RUN_17794_7#43 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191865/17794_7#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191865/17794_7#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#43 ERR2090718 SC_EXP_22841_1#177 433 73bc9536bfde1d4747076589424fa6de;d5735ec42a851410a23ee87711be4d7f 1313 aaf56c79f9228d58742ecf83f4e39d6e;9d89c39076e5a761f585f277438e3934 SAMEA104035577 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090718/ERR2090718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090718/ERR2090718_2.fastq.gz 2545410 WGS a9deddd0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49648741;54441576 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090718/ERR2090718_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090718/ERR2090718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090718/22841_1#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090718/22841_1#177.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090718/ERR2090718_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090718/ERR2090718_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090718/22841_1#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090718/22841_1#177.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73116127;4229 ERS1699470 ERX2147512 GENOMIC DN477156T:B11 318176250 2017-08-08 SC_RUN_22841_1#177 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090718/22841_1#177.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090718/22841_1#177.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#177 ERR1788271 SC_EXP_21127_1#73 446 97d9ddc8d15674d02a03d8a8e5575e9d;f7d17511db77a8bc5ca16613aca8b36e 1313 2f3222a1e53bb80c5149292b809196fa;23cafb013957d3d58cefc93b1b070285 SAMEA4387969 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788271/ERR1788271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788271/ERR1788271_2.fastq.gz 2323658 WGS 653b6d30-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 43729349;43767213 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788271/ERR1788271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788271/ERR1788271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788271/21127_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788271/21127_1#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788271/ERR1788271_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788271/ERR1788271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788271/21127_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788271/21127_1#73.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62478071;3913 ERS1299418 ERX1851994 GENOMIC DN465133W:B10 290457250 2017-01-11 SC_RUN_21127_1#73 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788271/21127_1#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788271/21127_1#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#73 ERR1214509 SC_EXP_18090_2#1 454 f1a6057d7168a36dee54ff013868f252;b280882e542b69f0a083935a942331cf 1313 b0534496283f2d60a3dc315566e38f89;42899c7b6a815c3d00753a92d8f26990 SAMEA3431544 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214509/ERR1214509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214509/ERR1214509_2.fastq.gz 3054892 WGS GPS_HK_03-sc-2296718 RANDOM 60123497;62314841 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214509/ERR1214509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214509/ERR1214509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214509/18090_2#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214509/18090_2#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214509/ERR1214509_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214509/ERR1214509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214509/18090_2#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214509/18090_2#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86962871;5108 ERS740829 ERX1286722 GENOMIC 15079927 381861500 2016-01-19 SC_RUN_18090_2#1 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214509/18090_2#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214509/18090_2#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#1 ERR1192074 SC_EXP_17794_8#63 441 89bd77aea4bbbe9528a1aa5bd4d3da6e;4400bfe0d62935c1b5431b8bd197e0d4 1313 13e82bac2d83ccc475393f6273ab755d;409874a5a9bcc5607a046e6f687bda5d SAMEA3381598 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192074/ERR1192074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192074/ERR1192074_2.fastq.gz 2304420 WGS GPS_GM_2109-sc-2279477 RANDOM 42454531;44611781 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192074/ERR1192074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192074/ERR1192074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192074/17794_8#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192074/17794_8#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192074/ERR1192074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192074/ERR1192074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192074/17794_8#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192074/17794_8#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66822446;3885 ERS719857 ERX1265458 GENOMIC 14941610 288052500 2015-12-17 SC_RUN_17794_8#63 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192074/17794_8#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192074/17794_8#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#63 ERR1065999 SC_EXP_17175_4#80 467 adbdea0df7a32574115e9f531456a7f5;fc17060766d0642989c4bf8e530196a2 1313 4661d205bdf6c16c50ddbb1443092d15;372c32a4457d28a8c81ec07a88f55663 SAMEA3353504 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065999/ERR1065999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065999/ERR1065999_2.fastq.gz 5456488 WGS GPS_ZA_carriage_SP1505-sc-2278104 RANDOM 96349424;100786549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065999/ERR1065999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065999/ERR1065999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065999/17175_4#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065999/17175_4#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065999/ERR1065999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065999/ERR1065999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065999/17175_4#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065999/17175_4#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 151478688;9011 ERS707859 ERX1146149 GENOMIC 14436390 682061000 2015-10-13 SC_RUN_17175_4#80 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065999/17175_4#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065999/17175_4#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#80 ERR1106743 SC_EXP_17428_8#120 478 a8ccf465d2c8a39dbcef6d1a0a6ec233;e5ab88a9a6865a9afb5e66e330840e50 1313 cd47ffdd59a78391c02db637abefa924;4f22e0391e7442ee9a3c54299342c3a6 SAMEA3381334 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1106743/ERR1106743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1106743/ERR1106743_2.fastq.gz 2441158 WGS GPS_GM_1846-sc-2279153 RANDOM 43829629;45240604 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1106743/ERR1106743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1106743/ERR1106743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106743/17428_8#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106743/17428_8#120.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/003/ERR1106743/ERR1106743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/003/ERR1106743/ERR1106743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106743/17428_8#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106743/17428_8#120.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68133587;4121 ERS719593 ERX1186274 GENOMIC 14702520 305144750 2015-11-03 SC_RUN_17428_8#120 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106743/17428_8#120.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106743/17428_8#120.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#120 ERR984278 SC_EXP_16453_2#41 218 a07d94ea118861fa9b75c8d2bc4eeea8;e9b1189ac35bd9886a14f5f843848807 1313 f8dcdb5d1f817f445dc8a28095de58c9;2a4ef0a5f1fa213981ee6f40eef04af0 SAMEA3309795 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984278/ERR984278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984278/ERR984278_2.fastq.gz 5841230 WGS GPS_GM_1813-sc-2206610 RANDOM 101702716;107061915 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984278/ERR984278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984278/ERR984278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984278/16453_2#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984278/16453_2#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984278/ERR984278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984278/ERR984278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984278/16453_2#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984278/16453_2#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 175740299;9663 ERS686257 ERX1065499 GENOMIC 13843257 730153750 2015-08-18 SC_RUN_16453_2#41 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984278/16453_2#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984278/16453_2#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#41 ERR1065236 SC_EXP_17059_7#32 465 e704367bdcd403a7ff74bb3e39124f3b;8bade1c466c2558802a2a7c06b3fd14e 1313 cea63acba6e1fa78cc814ff54eae5d04;bc177591d3fc698da7157ebdea9a5868 SAMEA3353223 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065236/ERR1065236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065236/ERR1065236_2.fastq.gz 4827172 WGS GPS_ZA_carriage_SP1266-sc-2277821 RANDOM 86438475;89234022 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065236/ERR1065236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065236/ERR1065236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065236/17059_7#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065236/17059_7#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065236/ERR1065236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065236/ERR1065236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065236/17059_7#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065236/17059_7#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 142786074;8005 ERS707578 ERX1145386 GENOMIC 14406369 603396500 2015-10-13 SC_RUN_17059_7#32 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065236/17059_7#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065236/17059_7#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#32 ERR1065523 SC_EXP_17138_4#40 472 6275cad8a1d25b9477026f7e2c3daade;8c6d2d5050b22f5f9006de6d333c6dd2 1313 8f2b26d00d89c82b427e8f16f18b80ae;3be11938b8cf8634da105aaf5d0b70a0 SAMEA3354322 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065523/ERR1065523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065523/ERR1065523_2.fastq.gz 5210276 WGS GPS_ZA_carriage_SP2011-sc-2278944 RANDOM 103274911;101446261 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065523/ERR1065523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065523/ERR1065523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065523/17138_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065523/17138_4#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065523/ERR1065523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065523/ERR1065523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065523/17138_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065523/17138_4#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 155529175;8631 ERS708677 ERX1145673 GENOMIC 14468641 651284500 2015-10-13 SC_RUN_17138_4#40 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065523/17138_4#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065523/17138_4#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#40 ERR980128 SC_EXP_16288_6#7 206 f879c10e180ac14e8f65f5f92a5ce0fe;51148ae9988c8bcbb593ea00a62cc843 1313 112cea13cba6c7ba4d0616f07f4e913d;df03c70ccb98e17d685c56e20aa4af6e SAMEA3232599 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980128/ERR980128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980128/ERR980128_2.fastq.gz 5245808 WGS GPS_NP_3341-sc-2205517 RANDOM 176693704;171262301 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980128/ERR980128_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980128/ERR980128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980128/16288_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980128/16288_6#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980128/ERR980128_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980128/ERR980128_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980128/16288_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980128/16288_6#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281352908;8515 ERS653810 ERX1057000 GENOMIC 13303978 524580800 2015-08-12 SC_RUN_16288_6#7 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980128/16288_6#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980128/16288_6#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_6#7 ERR925132 SC_EXP_15995_1#108 231 f7aafebb29e77c1238afd365c6ae2fe0;53db59bd31c80e3c670c107eab29ef4d 1313 512a56bfafe582d2c9638c77dd8475e8;849d2bd9e868ba24a349dd38462861c4 SAMEA3208848 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925132/ERR925132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925132/ERR925132_2.fastq.gz 1812760 WGS GPS_ZA_carriage_SP893-sc-2204984 RANDOM 54754650;57350341 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925132/ERR925132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925132/ERR925132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925132/15995_1#108.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925132/15995_1#108.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925132/ERR925132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925132/ERR925132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925132/15995_1#108.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925132/15995_1#108.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90964719;3102 ERS639950 ERX1004407 GENOMIC 13241102 181276000 2015-06-23 SC_RUN_15995_1#108 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925132/15995_1#108.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925132/15995_1#108.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#108 ERR913087 SC_EXP_15873_1#29 206 bd695a1f69902dd895fb8b539805b272;71225bc1f76829f20a3f0bc14f09bfcf 1313 27320f64f891bc4036e82565981e23bd;0c356912e288a4451c737cf2f69ce797 SAMEA3207129 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913087/ERR913087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913087/ERR913087_2.fastq.gz 4367724 WGS GPS_ZA_carriage_SP527-sc-2192067 RANDOM 135848232;142125383 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913087/ERR913087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913087/ERR913087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913087/15873_1#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913087/15873_1#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913087/ERR913087_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913087/ERR913087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913087/15873_1#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913087/15873_1#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 223782577;7107 ERS639139 ERX992211 GENOMIC 13227585 436772400 2015-06-17 SC_RUN_15873_1#29 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913087/15873_1#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913087/15873_1#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#29 ERR925338 SC_EXP_15995_2#128 219 67ba0664ca5d4a933da77a065891ad6a;7494441abb4b87a39511924bc3664d06 1313 b8d3c8c450a47125f9f812943f7624bd;ebceffd382224a66b1320043250435bd SAMEA3209058 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925338/ERR925338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925338/ERR925338_2.fastq.gz 2011354 WGS GPS_ZA_carriage_SP1133-sc-2205196 RANDOM 62290819;64673419 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925338/ERR925338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925338/ERR925338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925338/15995_2#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925338/15995_2#128.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925338/ERR925338_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925338/ERR925338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925338/15995_2#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925338/15995_2#128.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103404211;3423 ERS640160 ERX1004613 GENOMIC 13301298 201135400 2015-06-23 SC_RUN_15995_2#128 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925338/15995_2#128.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925338/15995_2#128.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#128 ERR909030 SC_EXP_15841_2#86 229 59f33414732d4313a332bafff1dfc0f1;9bd8964ad23d4bc3db42e0479016e9ec 1313 65f677f8728456ab0e1b45f704a8ea59;1725d91bacd828c926da7520999c5fee SAMEA3207282 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909030/ERR909030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909030/ERR909030_2.fastq.gz 5449472 WGS GPS_ZA_carriage_SP641-sc-2192220 RANDOM 174207188;181113325 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909030/ERR909030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909030/ERR909030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909030/15841_2#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909030/15841_2#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909030/ERR909030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909030/ERR909030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909030/15841_2#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909030/15841_2#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289640242;8832 ERS639292 ERX988285 GENOMIC 13265150 544947200 2015-06-09 SC_RUN_15841_2#86 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909030/15841_2#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909030/15841_2#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#86 ERR909027 SC_EXP_15841_2#83 229 92ec6f55fc8330b2ef09afa267eccafa;1beb28877123f7bbdc7a6124f4b629a3 1313 040b46c117f1a494b2c6cdae75d2b5b4;8a091d3245408858fdb77568008f22b5 SAMEA3207279 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909027/ERR909027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909027/ERR909027_2.fastq.gz 5276644 WGS GPS_ZA_carriage_SP605-sc-2192217 RANDOM 168348720;173998362 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909027/ERR909027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909027/ERR909027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909027/15841_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909027/15841_2#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909027/ERR909027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909027/ERR909027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909027/15841_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909027/15841_2#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277526059;8560 ERS639289 ERX988282 GENOMIC 13265114 527664400 2015-06-09 SC_RUN_15841_2#83 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909027/15841_2#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909027/15841_2#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#83 ERR714419 SC_EXP_14410_7#62 220 a597f53c719fd609459c0df7017a1381;8e4e0dee4c23abd2227f26f07311dcc4 1313 b09e1337ad3125d5125d681abb606d91;a3fea60fea2a1a397ee25812fe83de32 SAMEA2627498 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714419/ERR714419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714419/ERR714419_2.fastq.gz 5882298 WGS GPS_GM_0495-sc-2003445 RANDOM 203889357;206229814 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714419/ERR714419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714419/ERR714419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714419/14410_7#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714419/14410_7#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714419/ERR714419_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714419/ERR714419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714419/14410_7#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714419/14410_7#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 340054356;9695 ERS497397 ERX658341 GENOMIC 11883216 588229800 2015-01-08 SC_RUN_14410_7#62 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714419/14410_7#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714419/14410_7#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#62 ERR600194 SC_EXP_13414_2#61 233 4fc7430b4e458fe6c087cc99ab8af390;e5cbbae2b462f107ee3c7ae5cec374ac 1313 c65db5005c6fc931012d81a4619932ca;aa5020cb092dbbfcb61b32b5fd26229c SAMEA2521612 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600194/ERR600194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600194/ERR600194_2.fastq.gz 5747906 WGS 2012220587-sc-1946904 RANDOM 194518545;200444532 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600194/ERR600194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600194/ERR600194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600194/13414_2#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600194/13414_2#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600194/ERR600194_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600194/ERR600194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600194/13414_2#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600194/13414_2#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325094303;9279 ERS455152 ERX557023 GENOMIC 10600549 574790600 2014-09-16 SC_RUN_13414_2#61 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600194/13414_2#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600194/13414_2#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#61 ERR774141 SC_EXP_14913_5#44 225 826c64f8478dc3105a0a36146c30a6fd;279dde0c8359890e9bf12afccc9d6cad 1313 a4dd535523ed171ba8d60ef72572e5a3;5eb6c59ac777ce2c8aed3ec2777ac013 SAMEA2814444 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774141/ERR774141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774141/ERR774141_2.fastq.gz 4841602 WGS GPS_ZA_2656-sc-2138239 RANDOM 161072504;168742288 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774141/ERR774141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774141/ERR774141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774141/14913_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774141/14913_5#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774141/ERR774141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774141/ERR774141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774141/14913_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774141/14913_5#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268960159;7763 ERS566812 ERX717020 GENOMIC 12403408 484160200 2015-03-03 SC_RUN_14913_5#44 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774141/14913_5#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774141/14913_5#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#44 ERR730860 SC_EXP_14566_6#5 237 1805b0d22af9657a43a190ecce4fe333;2e712039d702110f5cd9ff108bd16b83 1313 a752020be67d9aaff0749d2c72daf874;7063c146ec743d19b554d0945f1803fe SAMEA2658901 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730860/ERR730860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730860/ERR730860_2.fastq.gz 4998252 WGS GPS_ZA_1952-sc-2021538 RANDOM 148146533;153791557 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730860/ERR730860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730860/ERR730860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730860/14566_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730860/14566_6#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730860/ERR730860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730860/ERR730860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730860/14566_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730860/14566_6#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248838457;8251 ERS508929 ERX674806 GENOMIC 11887148 499825200 2015-01-14 SC_RUN_14566_6#5 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730860/14566_6#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730860/14566_6#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#5 ERR554872 SC_EXP_12673_6#41 221 5b475ade82d45c4e11e6dbcaa485d7ac;2c329a5bb86ee6bec4c2b80c85d8b286 1313 b3a7c38145c389e3408aef06ce92df98;ad53810b283673146bfb5390fbe369f0 SAMEA2382586 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554872/ERR554872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554872/ERR554872_2.fastq.gz 4218436 WGS 2120179-sc-1869831 RANDOM 139024136;156766778 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554872/ERR554872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554872/ERR554872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554872/12673_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554872/12673_6#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554872/ERR554872_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554872/ERR554872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554872/12673_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554872/12673_6#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 245896064;6949 ERS408911 ERX513941 GENOMIC 9798902 421843600 2014-07-02 SC_RUN_12673_6#41 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554872/12673_6#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554872/12673_6#41.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 ERR506003 SC_EXP_12299_1#19 227 5683a438022f5facb8815a25d30428ec;148b74038b83f2bd0e761bc1c99e99b3 1313 6aa7bc0ca049177d4152204360e88efd;1909a836f0ce27a6657c257ca6c33253 SAMEA2336131 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506003/ERR506003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506003/ERR506003_2.fastq.gz 5895730 WGS 2009215738-sc-1811061 RANDOM 193785573;199230842 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506003/ERR506003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506003/ERR506003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506003/12299_1#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506003/12299_1#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506003/ERR506003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506003/ERR506003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506003/12299_1#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506003/12299_1#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322095603;9656 ERS394325 ERX471360 GENOMIC 9446499 589573000 2014-05-19 SC_RUN_12299_1#19 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506003/12299_1#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506003/12299_1#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#19 ERR449179 SC_EXP_11822_1#90 252 cb29668f7304c2ca1120b7182228ed2f;4346ea0f1b81951d091d459759a448c3 1313 d658825f8111793df12e60a788e71e03;60f2a6960780201438e7972846f1ee73 SAMEA1973012 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449179/ERR449179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449179/ERR449179_2.fastq.gz 6222256 WGS 2691_99-sc-2013-07-03T13:36:58Z-1659427 RANDOM 206417442;213454625 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449179/ERR449179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449179/ERR449179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449179/11822_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449179/11822_1#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449179/ERR449179_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449179/ERR449179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449179/11822_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449179/11822_1#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 346207466;10218 ERS322598 ERX415551 GENOMIC 8966789 622225600 2014-03-04 SC_RUN_11822_1#90 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449179/11822_1#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449179/11822_1#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_1#90 ERR434056 SC_EXP_11679_1#92 216 975a2558502b009003538431ef150889;433991318ddc3d22ea1ea03736f12233 1313 2416ce76e769121bd9ccd06832d8a2b1;2be9c8b48da7028a750a23efa83df143 SAMEA2204192 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434056/ERR434056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434056/ERR434056_2.fastq.gz 3343688 WGS PATH5903-sc-2013-10-09T11:57:02Z-1712785 RANDOM 108732771;112216551 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434056/ERR434056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434056/ERR434056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434056/11679_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434056/11679_1#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434056/ERR434056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434056/ERR434056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434056/11679_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434056/11679_1#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 181478275;5459 ERS356703 ERX400331 GENOMIC 8801454 334368800 2014-02-18 SC_RUN_11679_1#92 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434056/11679_1#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434056/11679_1#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#92 ERR273520 SC_EXP_6730_4#17 231 6e45726accd175f5e0e2ace807833cc4 1313 284ab4e72ef16e4a211400733d3467ec;f76b47c3c741ddb67199d3e6d0ea7911 SAMEA1024941 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273520/ERR273520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273520/ERR273520_2.fastq.gz 4616096 WGS SMRU641-sc-2011-01-27-1060830 RANDOM 214314468;220153864 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273520/ERR273520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273520/ERR273520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273520/6730_4#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273520/ERR273520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273520/ERR273520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273520/6730_4#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 629826321 ERS020151 ERX247796 GENOMIC 3100119 692414400 2013-05-13 SC_RUN_6730_4#17 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273520/6730_4#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR129151 SC_EXP_7622_4#31 221 88853768163d30bef8d8296fb14deaf8 1313 eb568ebac6698946e00c46a9235197d3;abf67794d0b491b1464c0a3eabb472a7 SAMEA1463246 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129151/ERR129151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129151/ERR129151_2.fastq.gz 2241113 WGS LE4099-sc-2011-11-08T10:07:54Z-1298410 RANDOM 241798359;247313163 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129151/ERR129151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129151/ERR129151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129151/7622_4#31.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129151/ERR129151_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129151/ERR129151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129151/7622_4#31.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 479068898 ERS070042 ERX105292 GENOMIC 4336560 448222600 2012-05-28 SC_RUN_7622_4#31 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129151/7622_4#31.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR063817 SC_EXP_6899_4#8 190 2e79e00e3733fa8e2b5a5fef59492888 1313 6bcfc558e7cadd39985900ba07c5c088;4ec07b2752dd289e032d8e59f972ea61 SAMEA1025920 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063817/ERR063817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063817/ERR063817_2.fastq.gz 4204574 WGS SMRU2024-sc-2011-01-27-1062237 RANDOM 276210862;269072174 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063817/ERR063817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063817/ERR063817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063817/6899_4#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063817/ERR063817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063817/ERR063817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063817/6899_4#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 682002904 ERS021534 ERX041790 GENOMIC 3499949 630686100 2012-01-05 SC_RUN_6899_4#8 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063817/6899_4#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063812 SC_EXP_6899_4#3 190 fd82a1f73d5ce420aaddebc7538b1c2e 1313 b68fb8a247484d590d43b34fd33ab051;51fe47bfd3f01981cce2706721b4a89f SAMEA1026005 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063812/ERR063812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063812/ERR063812_2.fastq.gz 4193267 WGS SMRU2019-sc-2011-01-27-1062232 RANDOM 267727158;260263272 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063812/ERR063812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063812/ERR063812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063812/6899_4#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063812/ERR063812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063812/ERR063812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063812/6899_4#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 673554960 ERS021529 ERX041785 GENOMIC 3499944 628990050 2012-01-05 SC_RUN_6899_4#3 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063812/6899_4#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063975 SC_EXP_6925_5#22 235 5cf7bacfb1515cb089315a1c73732e61 1313 33c0bb1eba9666bd5ffce662d891688c;fc6f1401daae7037a2d01fb0c1fb3bf5 SAMEA1026205 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063975/ERR063975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063975/ERR063975_2.fastq.gz 4986417 WGS SMRU2182-sc-2011-01-27-1062395 RANDOM 290121966;285656839 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063975/ERR063975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063975/ERR063975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063975/6925_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063975/ERR063975_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063975/ERR063975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063975/6925_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 751334169 ERS021692 ERX041948 GENOMIC 3610978 747962550 2012-01-05 SC_RUN_6925_5#22 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063975/6925_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048028 SC_EXP_6630_4#15 226 ba9e15c2219740d0b8892ec8eae88260 1313 c37e0ff039884ce368579cb5d7a9fb59;9131add54d66a6f453cc841d391b4169 SAMEA1023801 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048028/ERR048028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048028/ERR048028_2.fastq.gz 1493307 WGS SMRU399-sc-2011-01-27-1060588 RANDOM 93525156;93376234 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048028/ERR048028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048028/ERR048028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048028/6630_4#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048028/ERR048028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048028/ERR048028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048028/6630_4#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 236207230 ERS019557 ERX025091 GENOMIC 2952186 223996050 2011-10-11 SC_RUN_6630_4#15 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048028/6630_4#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048019 SC_EXP_6630_4#6 226 f72bbd6415e7cd8491290f4ccb71797c 1313 a5bba0ae5d47d6eca6c17a4abfc15970;be3fd138cdae6f69c61f467d379b22da SAMEA1023695 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048019/ERR048019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048019/ERR048019_2.fastq.gz 1193782 WGS SMRU390-sc-2011-01-27-1060579 RANDOM 70430686;69567620 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048019/ERR048019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048019/ERR048019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048019/6630_4#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048019/ERR048019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048019/ERR048019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048019/6630_4#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 182571642 ERS019548 ERX025082 GENOMIC 2952177 179067300 2011-10-11 SC_RUN_6630_4#6 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048019/6630_4#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048150 SC_EXP_6631_5#17 201 b29be692e976479cc1f58a7dc18cdc09 1313 f271e9da81d87fc00bf1b4d8c535b30c;edc08baff43f5a40f853480b484a68f6 SAMEA1023941 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048150/ERR048150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048150/ERR048150_2.fastq.gz 4843456 WGS SMRU473-sc-2011-01-27-1060662 RANDOM 259322835;254600469 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048150/ERR048150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048150/ERR048150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048150/6631_5#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048150/ERR048150_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048150/ERR048150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048150/6631_5#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 656765467 ERS019631 ERX025213 GENOMIC 3037792 726518400 2011-10-11 SC_RUN_6631_5#17 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048150/6631_5#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR051418 SC_EXP_6730_1#8 236 beecd71514267210f12b3beb5d33ea05 1313 4ad3459b8a8b0f130d24070df5342d67;6dbcf1d65aa6648883a96a6950ceebb6 SAMEA1024806 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051418/ERR051418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051418/ERR051418_2.fastq.gz 3518763 WGS SMRU584-sc-2011-01-27-1060773 RANDOM 193015086;200264461 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051418/ERR051418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051418/ERR051418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051418/6730_1#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051418/ERR051418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051418/ERR051418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051418/6730_1#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 500450874 ERS020094 ERX028466 GENOMIC 3100062 527814450 2011-11-02 SC_RUN_6730_1#8 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051418/6730_1#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR054557 SC_EXP_6755_3#1 217 b4545ca81106850668d7993b2ab1f850 1313 83cf9d5459758be3f1a79b2b7e3f210d;5d0d83c9321b6081a87a1fb8fadd3b99 SAMEA1024587 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054557/ERR054557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054557/ERR054557_2.fastq.gz 4610200 WGS SMRU865-sc-2011-01-27-1061078 RANDOM 211936751;217284376 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054557/ERR054557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054557/ERR054557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054557/6755_3#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054557/ERR054557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054557/ERR054557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054557/6755_3#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 555346823 ERS020375 ERX031603 GENOMIC 3152386 691530000 2011-11-15 SC_RUN_6755_3#1 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054557/6755_3#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051486 SC_EXP_6730_6#4 233 999e5d2842b7fc89e4f4104f3d7c16b9 1313 71037104f7dce7ce74a8d1c185fb3bca;5fe900370966b73269e7130747114f39 SAMEA1024654 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051486/ERR051486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051486/ERR051486_2.fastq.gz 2648858 WGS SMRU676-sc-2011-01-27-1060865 RANDOM 137813886;144100606 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051486/ERR051486_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051486/ERR051486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051486/6730_6#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051486/ERR051486_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051486/ERR051486_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051486/6730_6#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 360279186 ERS020186 ERX028534 GENOMIC 3100178 397328700 2011-11-02 SC_RUN_6730_6#4 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051486/6730_6#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR067942 SC_EXP_7004_8#79 223 0d7aac7bfbddfd6a9cacda827ebf305c 1313 ecb8c4f2988f8a42b94eb8ddaa799cd1;d8c8233a754cb2567c029eebf49864a1 SAMEA1029328 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067942/ERR067942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067942/ERR067942_2.fastq.gz 4069841 WGS SMRU2911-sc-2011-01-27-1063124 RANDOM 261037432;253992736 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067942/ERR067942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067942/ERR067942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067942/7004_8#79.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067942/ERR067942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067942/ERR067942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067942/7004_8#79.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 635694712 ERS022421 ERX045805 GENOMIC 3740266 610476150 2012-03-19 SC_RUN_7004_8#79 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067942/7004_8#79.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069815 SC_EXP_6999_6#18 249 8750ca97118e7b21502b2613bd596531 1313 3f2fa09b5d18486e4d10e586f1cf247f;700a49bc233d125163703779db1e5e31 SAMEA1032524 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069815/ERR069815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069815/ERR069815_2.fastq.gz 4014915 WGS 304793-sc-2011-08-01T09:45:58Z-1250186 RANDOM 227331116;234058468 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069815/ERR069815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069815/ERR069815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069815/6999_6#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069815/ERR069815_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069815/ERR069815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069815/6999_6#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 596143805 ERS044121 ERX047668 GENOMIC 3737039 602237250 2012-01-19 SC_RUN_6999_6#18 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069815/6999_6#18.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR066249 SC_EXP_6983_4#74 238 2c74ceef1e00b299f158a4382e1c9177 1313 c8ec93dcba701b3e077f0e14028626f9;823f4211d760aff849b4c1db5f78f5ce SAMEA1025844 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066249/ERR066249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066249/ERR066249_2.fastq.gz 3850893 WGS SMRU2282-sc-2011-01-27-1062495 RANDOM 282420423;283524321 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066249/ERR066249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066249/ERR066249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066249/6983_4#74.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066249/ERR066249_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066249/ERR066249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066249/6983_4#74.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 655060340 ERS021791 ERX044112 GENOMIC 3594902 577633950 2012-01-10 SC_RUN_6983_4#74 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066249/6983_4#74.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR069645 SC_EXP_7011_5#11 204 7057ffba66602be6428418dce378420f 1313 b7a1f2dc75d86f0d5f9c2312d68d7bc3;314436767ea3c80dbf0e884169a9053d SAMEA1028652 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069645/ERR069645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069645/ERR069645_2.fastq.gz 3663165 WGS SMRU2795-sc-2011-01-27-1063008 RANDOM 219927569;213225415 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069645/ERR069645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069645/ERR069645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069645/7011_5#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069645/ERR069645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069645/ERR069645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069645/7011_5#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 552369380 ERS022305 ERX047498 GENOMIC 3758467 549474750 2012-01-19 SC_RUN_7011_5#11 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069645/7011_5#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR066301 SC_EXP_6983_6#30 237 53c93a12a3df87c069ecd593fb4187bd 1313 4b7fb382fa67db937ea5536f7d684c92;cc7dcb65fc1792861d167d846fb556fd SAMEA1029142 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066301/ERR066301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066301/ERR066301_2.fastq.gz 3626944 WGS SMRU2334-sc-2011-01-27-1062547 RANDOM 247436506;251746803 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066301/ERR066301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066301/ERR066301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066301/6983_6#30.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066301/ERR066301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066301/ERR066301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066301/6983_6#30.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 638618462 ERS021843 ERX044164 GENOMIC 3594954 544041600 2012-03-19 SC_RUN_6983_6#30 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066301/6983_6#30.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066292 SC_EXP_6983_5#21 242 fca0ebca605b38328037eca26b13171e 1313 211f6157488c67fb7b4187a1a9e5ccae;9a21162c55630c0ea37961facf947bab SAMEA1029030 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066292/ERR066292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066292/ERR066292_2.fastq.gz 3679006 WGS SMRU2325-sc-2011-01-27-1062538 RANDOM 259668214;265419502 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066292/ERR066292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066292/ERR066292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066292/6983_5#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066292/ERR066292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066292/ERR066292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066292/6983_5#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 655833908 ERS021834 ERX044155 GENOMIC 3594945 551850900 2012-03-19 SC_RUN_6983_5#21 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066292/6983_5#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057919 SC_EXP_6823_4#18 242 06e6a6c12479f840e24f2b090eda6857 1313 03f076a50b864ec4c8df20706584b78d;10e4808be18bfb563710bbf30d6d9b60 SAMEA1026042 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057919/ERR057919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057919/ERR057919_2.fastq.gz 4431375 WGS SMRU1938-sc-2011-01-27-1062151 RANDOM 267281558;282824234 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057919/ERR057919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057919/ERR057919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057919/6823_4#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057919/ERR057919_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057919/ERR057919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057919/6823_4#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 685636650 ERS021448 ERX035765 GENOMIC 3469167 664706250 2012-03-22 SC_RUN_6823_4#18 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057919/6823_4#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057802 SC_EXP_6807_2#20 221 c02caa5babe01add8eb61e815c4c1141 1313 9e941147410cf2d68e4c1746a85c4d71;ca9396db7ec8f597eb66b7f722c75094 SAMEA1025508 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057802/ERR057802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057802/ERR057802_2.fastq.gz 2559175 WGS SMRU1604-sc-2011-01-27-1061817 RANDOM 156534358;155052163 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057802/ERR057802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057802/ERR057802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057802/6807_2#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057802/ERR057802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057802/ERR057802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057802/6807_2#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 408516208 ERS021114 ERX035648 GENOMIC 3414300 383876250 2011-12-05 SC_RUN_6807_2#20 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057802/6807_2#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057751 SC_EXP_6791_6#17 233 9bba99e3c18930c99a252a4dbf51234c 1313 b6b50e040cbe3140c020d2983d71b000;212a4feff9b79c55430475a7c753c14b SAMEA1024941 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057751/ERR057751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057751/ERR057751_2.fastq.gz 6834005 WGS SMRU641-sc-2011-01-27-1060830 RANDOM 423288404;418291080 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057751/ERR057751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057751/ERR057751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057751/6791_6#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057751/ERR057751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057751/ERR057751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057751/6791_6#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1077737946 ERS020151 ERX035597 GENOMIC 3100119 1025100750 2011-12-05 SC_RUN_6791_6#17 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057751/6791_6#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057874 SC_EXP_6823_2#21 245 2880a202e1b149cc3cfb8216366be240 1313 c2c03c3c5af3ef603a4338d9b2d381d8;ab76f9d4ff3c442ec46f09d19a1b2cce SAMEA1025695 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057874/ERR057874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057874/ERR057874_2.fastq.gz 7699961 WGS SMRU1893-sc-2011-01-27-1062106 RANDOM 459508841;475622577 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057874/ERR057874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057874/ERR057874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057874/6823_2#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057874/ERR057874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057874/ERR057874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057874/6823_2#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1182104109 ERS021403 ERX035720 GENOMIC 3469122 1154994150 2012-03-22 SC_RUN_6823_2#21 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057874/6823_2#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057870 SC_EXP_6823_2#17 245 a9bda25e1b219271929d4e7b4ca2dc05 1313 4b5bfa5ff0f4ce2eb93f75a321dfd251;096e5913f417e94c0cc56cf5d70b46ec SAMEA1025875 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057870/ERR057870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057870/ERR057870_2.fastq.gz 3548763 WGS SMRU1889-sc-2011-01-27-1062102 RANDOM 220266691;229468021 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057870/ERR057870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057870/ERR057870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057870/6823_2#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057870/ERR057870_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057870/ERR057870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057870/6823_2#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 566098520 ERS021399 ERX035716 GENOMIC 3469118 532314450 2012-03-22 SC_RUN_6823_2#17 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057870/6823_2#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR050058 SC_EXP_6680_8#3 230 22da31c9312b23899fd523c60efe33ba 1313 879c386a8012863ed05c6ca9407db31e;e2364482b63a0e1c53cff9ebbf47b025 SAMEA1023840 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050058/ERR050058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050058/ERR050058_2.fastq.gz 5374745 WGS SMRU195-sc-2011-01-27-1060384 RANDOM 292710690;306391995 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050058/ERR050058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050058/ERR050058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050058/6680_8#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050058/ERR050058_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050058/ERR050058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050058/6680_8#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 757562756 ERS019353 ERX027118 GENOMIC 2950528 806211750 2011-10-25 SC_RUN_6680_8#3 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050058/6680_8#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR084205 SC_EXP_7038_6#3 252 6543cf36fd206b4fa453b50b4ac886ca 1313 bed9646430f60e129c091a76f687335f;0e193717f8757e27a9646743415fc14b SAMEA1029351 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084205/ERR084205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084205/ERR084205_2.fastq.gz 3941894 WGS SMRU2979-sc-2011-01-27-1063192 RANDOM 257344138;261211899 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084205/ERR084205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084205/ERR084205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084205/7038_6#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084205/ERR084205_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084205/ERR084205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084205/7038_6#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 981697387 ERS022489 ERX061971 GENOMIC 3811682 591284100 2012-02-07 SC_RUN_7038_6#3 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084205/7038_6#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR049971 SC_EXP_6680_4#12 238 5538c92bf72d89f7b6e08f8cf1bbe96c 1313 3b3d8758ae288a514db13f259cb76762;f06f2226a5e67e8f075ca1c6da1e114f SAMEA1024767 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049971/ERR049971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049971/ERR049971_2.fastq.gz 11275436 WGS SMRU900-sc-2011-01-27-1061113 RANDOM 625840095;656626698 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049971/ERR049971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049971/ERR049971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049971/6680_4#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049971/ERR049971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049971/ERR049971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049971/6680_4#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1572557584 ERS020410 ERX027031 GENOMIC 3178550 1691315400 2011-11-07 SC_RUN_6680_4#12 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049971/6680_4#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 ERR065304 SC_EXP_6925_1#66 245 72650c3db183216c2021ece994255c19 1313 565db3509d51b05a0e168fb731723e2b;eb2a71c63b185fb59db5704d18aff1f5 SAMEA1032541 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065304/ERR065304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065304/ERR065304_2.fastq.gz 4729775 WGS 3048-sc-2011-08-01T09:42:56Z-1249933 RANDOM 272620031;277334438 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065304/ERR065304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065304/ERR065304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065304/6925_1#66.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065304/ERR065304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065304/ERR065304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065304/6925_1#66.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 700019464 ERS043868 ERX043277 GENOMIC 3610876 709466250 2012-01-05 SC_RUN_6925_1#66 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065304/6925_1#66.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR2305584 SC_EXP_23495_7#28 414 dfe7c7776cd34c5c1b992a03e4ee4faf;5b2a01e2a3032434707e4296bb56446a 1313 59ea14cb33621fbee16736bf6db39a51;744d1dcbe775f16c8d3a8731cfea51ea SAMEA104034807 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305584/ERR2305584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305584/ERR2305584_2.fastq.gz 1623342 WGS f418b5a0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 48427488;55727598 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305584/ERR2305584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305584/ERR2305584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305584/23495_7#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305584/23495_7#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305584/ERR2305584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305584/ERR2305584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305584/23495_7#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305584/23495_7#28.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 75418917;2759 ERS1698700 ERX2356894 GENOMIC DN483688I:D4 245124642 2018-02-16 SC_RUN_23495_7#28 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305584/23495_7#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305584/23495_7#28.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808774 ERR2305540 SC_EXP_22984_8#78 352 a1a8b74890efe8defaf20906f55daf37;ae1ae6eb01449d9c6ffa5b1da89c1d32 1313 411f7893581832c3cb1062101b6ad934;ada4790bc837725343bad8e11466853c SAMEA104035048 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305540/ERR2305540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305540/ERR2305540_2.fastq.gz 1959984 WGS 040abda0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 58309205;75589411 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305540/ERR2305540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305540/ERR2305540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305540/22984_8#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305540/22984_8#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305540/ERR2305540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305540/ERR2305540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305540/22984_8#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305540/22984_8#78.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 98449883;3280 ERS1698941 ERX2356850 GENOMIC DN483712O:F10 295957584 2018-02-16 SC_RUN_22984_8#78 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305540/22984_8#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305540/22984_8#78.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809017 ERR2305585 SC_EXP_23495_7#29 403 5168ccc564cba722bd6c946596d53744;c3708208460207c47d34acbcde53e752 1313 34384ca5aa30d710fd7cca50c59edf9d;d3498a2fef227c1f1123be2a4f31c9cd SAMEA104034808 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305585/ERR2305585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305585/ERR2305585_2.fastq.gz 1793914 WGS f4218f40-13c3-11e7-942b-3c4a9275d6c8 RANDOM 53926730;60409777 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305585/ERR2305585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305585/ERR2305585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305585/23495_7#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305585/23495_7#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305585/ERR2305585_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305585/ERR2305585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305585/23495_7#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305585/23495_7#29.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 82505188;2991 ERS1698701 ERX2356895 GENOMIC DN483688I:E4 270881014 2018-02-16 SC_RUN_23495_7#29 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305585/23495_7#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305585/23495_7#29.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808775 ERR2305586 SC_EXP_23495_7#30 390 e149ad1ca5aa0e0626eba2585f4263d6;88cf8533e8afa33264b3f165cf27adaf 1313 0f9e2ff8994e1caf283e6a7453ec10b0;dd39e5c51770b312ffd8a26aceba02b2 SAMEA104034809 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305586/ERR2305586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305586/ERR2305586_2.fastq.gz 1647506 WGS f4297e80-13c3-11e7-942b-3c4a9275d6c8 RANDOM 49315208;55178755 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305586/ERR2305586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305586/ERR2305586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305586/23495_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305586/23495_7#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305586/ERR2305586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305586/ERR2305586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305586/23495_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305586/23495_7#30.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 75624868;2786 ERS1698702 ERX2356896 GENOMIC DN483688I:F4 248773406 2018-02-16 SC_RUN_23495_7#30 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305586/23495_7#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305586/23495_7#30.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808776 ERR2305542 SC_EXP_22984_8#80 450 89d102f1a2035e7cf2fc77babc2e72d0;24089daf930b2aa5718cf0222f9df1ab 1313 d68560146afa9de8189f9b5efb9c8618;2b553f069812b1522937a9b57d95d05b SAMEA104035050 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305542/ERR2305542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305542/ERR2305542_2.fastq.gz 1537532 WGS 041bfbb0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 45325212;63336979 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305542/ERR2305542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305542/ERR2305542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305542/22984_8#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305542/22984_8#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305542/ERR2305542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305542/ERR2305542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305542/22984_8#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305542/22984_8#80.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 80135474;2637 ERS1698943 ERX2356852 GENOMIC DN483712O:H10 232167332 2018-02-16 SC_RUN_22984_8#80 122 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305542/22984_8#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305542/22984_8#80.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809019 ERR2305306 SC_EXP_22695_3#265 418 48f59a0e40e5b370ca6e37daae8f6f02;b0a0bcf0a00293f7489f9ba547454711 1313 b0887178e6dd976a6eb6ecc7589f3252;63000d3ac6d075b51fe0c0e7f9764864 SAMEA104034949 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305306/ERR2305306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305306/ERR2305306_2.fastq.gz 2131740 WGS fcc9bf00-13c3-11e7-942b-3c4a9275d6c8 RANDOM 58911989;77488231 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305306/ERR2305306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305306/ERR2305306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305306/22695_3#265.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305306/22695_3#265.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305306/ERR2305306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305306/ERR2305306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305306/22695_3#265.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305306/22695_3#265.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100513109;3624 ERS1698842 ERX2356616 GENOMIC DN477146R:C10 321892740 2018-02-16 SC_RUN_22695_3#265 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305306/22695_3#265.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305306/22695_3#265.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808917 ERR1453725 SC_EXP_19341_3#77 417 fcd5e05a32b5587119ddcb9803c5a276;89441091cb3a00d0ea3dc65877e23343 1313 0f8867a95ceb0469afb917f1a2cfbd40;ec01ed932fbaf0424e0fdf7efe5605af SAMEA3714042 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/005/ERR1453725/ERR1453725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/005/ERR1453725/ERR1453725_2.fastq.gz 2437498 WGS 40ea9d10-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 48915997;52818974 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/005/ERR1453725/ERR1453725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/005/ERR1453725/ERR1453725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453725/19341_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453725/19341_3#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/005/ERR1453725/ERR1453725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/005/ERR1453725/ERR1453725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453725/19341_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453725/19341_3#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73033109;4119 ERS1021191 ERX1524203 GENOMIC 16008471 304687250 2016-06-14 SC_RUN_19341_3#77 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453725/19341_3#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453725/19341_3#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#77 ERR870175 SC_EXP_15531_5#78 214 184811647139af518313b3a20b8239e7;28f8e063fcd70dc1893ebd062ac6354d 1313 42a7e1c0b190b396deda1f60f061c117;d16437071fdd9c91b04a1e93d19f6931 SAMEA3172915 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870175/ERR870175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870175/ERR870175_2.fastq.gz 3676160 WGS GPS_GM_1059-sc-2190473 RANDOM 141484077;134698492 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870175/ERR870175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870175/ERR870175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870175/15531_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870175/15531_5#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870175/ERR870175_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870175/ERR870175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870175/15531_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870175/15531_5#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 228449747;6002 ERS627158 ERX949776 GENOMIC 12870960 367616000 2015-05-06 SC_RUN_15531_5#78 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870175/15531_5#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870175/15531_5#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#78 ERR1192082 SC_EXP_17794_8#71 441 c3dc01f39dfca93b3acdd5c041409ba2;fc9db175797e53a2d4a90c36f369e6d0 1313 f09fded77dacc8419c87d8c20439f34c;35a8f86b4fbecbdafb5147bb780df316 SAMEA3381606 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192082/ERR1192082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192082/ERR1192082_2.fastq.gz 2203754 WGS GPS_GM_2117-sc-2279485 RANDOM 41984562;42594423 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192082/ERR1192082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192082/ERR1192082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192082/17794_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192082/17794_8#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192082/ERR1192082_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192082/ERR1192082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192082/17794_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192082/17794_8#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64736610;3737 ERS719865 ERX1265466 GENOMIC 14941611 275469250 2015-12-17 SC_RUN_17794_8#71 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192082/17794_8#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192082/17794_8#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#71 ERR925131 SC_EXP_15995_1#107 231 4285eaab66b5c6a296b5af847c1c131a;bc1ec97f28766e4e84bfa401ac366b88 1313 165ea4db5e88200ae3464e6451e50321;22437fd55f9bc705454d82bd7e16c17e SAMEA3208847 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925131/ERR925131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925131/ERR925131_2.fastq.gz 1302916 WGS GPS_ZA_carriage_SP881-sc-2204983 RANDOM 39893684;41505751 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925131/ERR925131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925131/ERR925131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925131/15995_1#107.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925131/15995_1#107.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925131/ERR925131_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925131/ERR925131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925131/15995_1#107.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925131/15995_1#107.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65290878;2251 ERS639949 ERX1004406 GENOMIC 13241090 130291600 2015-06-23 SC_RUN_15995_1#107 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925131/15995_1#107.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925131/15995_1#107.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#107 ERR632871 SC_EXP_13414_8#4 241 6d15edf9c36fc40520d2762b5f7f9546;004c4cb6c46d3079aaab33bec2a6e64e 1313 8fc035033e4a8f37d03daf499013df23;3562746a515b5152618c80275677a428 SAMEA2553685 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632871/ERR632871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632871/ERR632871_2.fastq.gz 3983688 WGS GPS_ZA_621-sc-1950765 RANDOM 130805795;135091409 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632871/ERR632871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632871/ERR632871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632871/13414_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632871/13414_8#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632871/ERR632871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632871/ERR632871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632871/13414_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632871/13414_8#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 217520750;6520 ERS464186 ERX589425 GENOMIC 10631117 398368800 2014-09-23 SC_RUN_13414_8#4 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632871/13414_8#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632871/13414_8#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#4 ERR730190 SC_EXP_14520_4#50 222 47c9e164ea3bc70a53d181546fe0b1e8;e947765308601af61ba662115dfabed5 1313 87bc0103e2f59b74599375280dff0ff9;5b836a2c3bc866a5c325c461f1338168 SAMEA2696332 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730190/ERR730190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730190/ERR730190_2.fastq.gz 5249426 WGS GPS_GM_0568-sc-2021787 RANDOM 198062477;201737918 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730190/ERR730190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730190/ERR730190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730190/14520_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730190/14520_4#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730190/ERR730190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730190/ERR730190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730190/14520_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730190/14520_4#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 330846427;8606 ERS524911 ERX674136 GENOMIC 11982761 524942600 2015-01-14 SC_RUN_14520_4#50 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730190/14520_4#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730190/14520_4#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#50 ERR730187 SC_EXP_14520_4#47 222 d8c6671f188b43006f4901d01b1f6ce0;edba774cfb6154449853ac3a13f6b29a 1313 48843c92381071d32fb75bdcf50d585a;0302377b2c30d08248a688e2216f5feb SAMEA2696329 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730187/ERR730187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730187/ERR730187_2.fastq.gz 5624090 WGS GPS_GM_0565-sc-2021784 RANDOM 210187887;213766761 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730187/ERR730187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730187/ERR730187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730187/14520_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730187/14520_4#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730187/ERR730187_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730187/ERR730187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730187/14520_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730187/14520_4#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 350595855;9224 ERS524908 ERX674133 GENOMIC 11982820 562409000 2015-01-14 SC_RUN_14520_4#47 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730187/14520_4#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730187/14520_4#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#47 ERR701784 SC_EXP_14257_1#7 234 9b400478f4a64dc96b8654c1356002cd;b97f44f90c5b7edb54e24ab875dd1b96 1313 d450200559373d297e588048f2898a3b;e0296a5b24ba580e59acdd29626c4843 SAMEA2658289 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701784/ERR701784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701784/ERR701784_2.fastq.gz 5805240 WGS GPS_ZA_1384-sc-2020894 RANDOM 185930700;190160433 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701784/ERR701784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701784/ERR701784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701784/14257_1#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701784/14257_1#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701784/ERR701784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701784/ERR701784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701784/14257_1#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701784/14257_1#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 310057830;9493 ERS508317 ERX646047 GENOMIC 11814778 580524000 2014-12-16 SC_RUN_14257_1#7 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701784/14257_1#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701784/14257_1#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#7 ERR600144 SC_EXP_13414_1#92 292 4e7841a0e4cceb5658720a7754cdf235;df233dc4d60a1297532dd6ef6bd6e9fe 1313 1fea7f2d4565c2f06e66aa621bc9ce55;9354e40c32374c73661c7acd9f563ae2 SAMEA2521548 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600144/ERR600144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600144/ERR600144_2.fastq.gz 5862456 WGS 2013212823-sc-1946839 RANDOM 202373408;209982832 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600144/ERR600144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600144/ERR600144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600144/13414_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600144/13414_1#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600144/ERR600144_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600144/ERR600144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600144/13414_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600144/13414_1#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 344447506;9539 ERS455088 ERX556973 GENOMIC 10524156 586245600 2014-09-16 SC_RUN_13414_1#92 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600144/13414_1#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600144/13414_1#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#92 ERR600139 SC_EXP_13414_1#86 292 0d5e9f55352536314896323c0655b989;4f681f3e03eed20d94aac04bc4ee1b1c 1313 f8c40040c79ec067d7be2550d0765f1d;497f158c8795de821ae6a587ae521dc1 SAMEA2521542 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600139/ERR600139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600139/ERR600139_2.fastq.gz 5608822 WGS 2013208509-sc-1946833 RANDOM 192126984;198731690 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600139/ERR600139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600139/ERR600139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600139/13414_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600139/13414_1#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600139/ERR600139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600139/ERR600139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600139/13414_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600139/13414_1#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 327052560;9132 ERS455082 ERX556968 GENOMIC 10524179 560882200 2014-09-16 SC_RUN_13414_1#86 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600139/13414_1#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600139/13414_1#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#86 ERR600125 SC_EXP_13414_1#70 292 337f849e21e293ad7cd669bd096b15c0;f664be1d1ca56f39d74dbebf69c3edf3 1313 958fe5c3edefaa4d064065c9a30333de;304273632795b589ee368fa57aa2a370 SAMEA2521526 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600125/ERR600125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600125/ERR600125_2.fastq.gz 6315958 WGS 2013215778-sc-1946817 RANDOM 213123309;218665640 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600125/ERR600125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600125/ERR600125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600125/13414_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600125/13414_1#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600125/ERR600125_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600125/ERR600125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600125/13414_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600125/13414_1#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 366931732;10196 ERS455066 ERX556954 GENOMIC 10524177 631595800 2014-09-16 SC_RUN_13414_1#70 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600125/13414_1#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600125/13414_1#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#70 ERR600122 SC_EXP_13414_1#65 292 98dee08117b766bd27a6116d617b9721;972113611e4df8d49173d54012f3e453 1313 08bdceb165033dfe64b440ad54652a12;d16bbb19e87e283829f048cc4e3aef0a SAMEA2521521 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600122/ERR600122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600122/ERR600122_2.fastq.gz 6323012 WGS 2012224895-sc-1946812 RANDOM 214507154;218923458 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600122/ERR600122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600122/ERR600122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600122/13414_1#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600122/13414_1#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600122/ERR600122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600122/ERR600122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600122/13414_1#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600122/13414_1#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 360962982;10330 ERS455061 ERX556951 GENOMIC 10524117 632301200 2014-09-16 SC_RUN_13414_1#65 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600122/13414_1#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600122/13414_1#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#65 ERR554889 SC_EXP_12673_6#58 221 1a00c2936ab2b0a65062e2a150aee701;5fe6f5036cc52d982ff2e0dd233d337b 1313 d8cdef444fd6cb93fc2a1cf098651bce;8e68f8f5d460230e2d9e6dd956e831b2 SAMEA2382603 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554889/ERR554889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554889/ERR554889_2.fastq.gz 4415570 WGS 2120956-sc-1869848 RANDOM 145299097;164053457 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554889/ERR554889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554889/ERR554889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554889/12673_6#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554889/12673_6#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554889/ERR554889_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554889/ERR554889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554889/12673_6#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554889/12673_6#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 256699197;7271 ERS408928 ERX513958 GENOMIC 9798916 441557000 2014-07-02 SC_RUN_12673_6#58 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554889/12673_6#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554889/12673_6#58.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 ERR554861 SC_EXP_12673_6#30 221 00b4f554f51a972d9609a94114d50100;72d3da5a20f4dbd24bbba3fe1f83c4a4 1313 25cd917ddedcf7aa8f7c63ac36a2b5c9;ac654e6c774e873b07cafeee5c0ac695 SAMEA2382575 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554861/ERR554861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554861/ERR554861_2.fastq.gz 4687266 WGS 2111603-sc-1869820 RANDOM 154118797;173425209 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554861/ERR554861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554861/ERR554861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554861/12673_6#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554861/12673_6#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554861/ERR554861_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554861/ERR554861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554861/12673_6#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554861/12673_6#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 273643458;7726 ERS408900 ERX513930 GENOMIC 9798960 468726600 2014-07-02 SC_RUN_12673_6#30 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554861/12673_6#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554861/12673_6#30.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 ERR505795 SC_EXP_12291_4#83 230 315c81d43a2b3e32db2f1752b3b802af;684551d15c65358035cf5708dd86984a 1313 eb0e8e7d3c1c963a568c615778368ddc;ceace37548ef851e46c50fa8c2ae850d SAMEA2336015 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505795/ERR505795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505795/ERR505795_2.fastq.gz 4043708 WGS 2010208354-sc-1810943 RANDOM 130014315;134502983 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505795/ERR505795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505795/ERR505795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505795/12291_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505795/12291_4#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505795/ERR505795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505795/ERR505795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505795/12291_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505795/12291_4#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 215935079;6611 ERS394209 ERX471152 GENOMIC 9444676 404370800 2014-05-19 SC_RUN_12291_4#83 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505795/12291_4#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505795/12291_4#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#83 ERR505830 SC_EXP_12291_5#28 230 7fb935797a0093ead6e744953459559e;a536eba0e71db3ab0edcc83cf97cdf1b 1313 38e49d9a76e207ac8efdbce211d8f549;dccd3dcce3c7e0c9ac2c7635340dd303 SAMEA2336050 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505830/ERR505830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505830/ERR505830_2.fastq.gz 4654546 WGS 4223_99-sc-1810979 RANDOM 142799449;150175417 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505830/ERR505830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505830/ERR505830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505830/12291_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505830/12291_5#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505830/ERR505830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505830/ERR505830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505830/12291_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505830/12291_5#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239466050;7624 ERS394244 ERX471187 GENOMIC 9446415 465454600 2014-05-19 SC_RUN_12291_5#28 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505830/12291_5#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505830/12291_5#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#28 ERR461133 SC_EXP_11860_6#36 233 b51fbf3f45e1069a491011bce616c2f3;6ad20a9d09a847b15c8613f7c8553611 1313 fcf59782fe210bf8223491debfbf4f48;0e03a02a5399967319f551532e3a1289 SAMEA2238502 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461133/ERR461133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461133/ERR461133_2.fastq.gz 3807726 WGS 2080304-sc-2013-11-05T11:57:30Z-1749862 RANDOM 125635355;133658391 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461133/ERR461133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461133/ERR461133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461133/11860_6#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461133/11860_6#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461133/ERR461133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461133/ERR461133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461133/11860_6#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461133/11860_6#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 212989628;6199 ERS367314 ERX427474 GENOMIC 9015559 380772600 2014-03-18 SC_RUN_11860_6#36 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461133/11860_6#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461133/11860_6#36.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_6#36 ERR461754 SC_EXP_11861_5#15 221 3146b5e90ebf99debe5812a87a06b9d9;673b47fc565e1756ca6e18fda66c57d8 1313 192599ac12b254327213d0d15d029548;26bc445779190b29a0f4b3eb83ade7e5 SAMEA2239242 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461754/ERR461754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461754/ERR461754_2.fastq.gz 4266232 WGS 2010860-sc-2013-11-05T12:10:23Z-1750614 RANDOM 132297276;136999536 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461754/ERR461754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461754/ERR461754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461754/11861_5#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461754/11861_5#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461754/ERR461754_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461754/ERR461754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461754/11861_5#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461754/11861_5#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 219624305;6967 ERS368054 ERX428095 GENOMIC 9017888 426623200 2014-03-18 SC_RUN_11861_5#15 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461754/11861_5#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461754/11861_5#15.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461426 SC_EXP_11861_1#51 225 bb662de18ec553e1e71c25fd1de60635;ffde3c21b1d3d3bf873e8944bf3da055 1313 8eb4a6023da6cd5f5c10b9f5b1f15eb7;90e3428ff568bd6ef7afaf3f17e04c6c SAMEA2238613 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461426/ERR461426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461426/ERR461426_2.fastq.gz 3144836 WGS 2090243-sc-2013-11-05T11:59:26Z-1749974 RANDOM 102576050;107439038 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461426/ERR461426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461426/ERR461426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461426/11861_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461426/11861_1#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461426/ERR461426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461426/ERR461426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461426/11861_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461426/11861_1#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 170865872;5155 ERS367425 ERX427767 GENOMIC 9016138 314483600 2014-03-18 SC_RUN_11861_1#51 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461426/11861_1#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461426/11861_1#51.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#51 ERR460926 SC_EXP_11860_4#10 217 4149407111be1b14002ce38dfeb50bc5;1d9f034a377783f5e8a7eee3872767fd 1313 c4ee7bb6d116b762f48bfd1655fcc365;be1d3bdf14f58a440a57e44d57850f1b SAMEA2238285 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460926/ERR460926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460926/ERR460926_2.fastq.gz 4122640 WGS 2060772-sc-2013-11-05T11:54:00Z-1749643 RANDOM 134462599;142595218 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460926/ERR460926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460926/ERR460926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460926/11860_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460926/11860_4#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460926/ERR460926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460926/ERR460926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460926/11860_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460926/11860_4#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 227811784;6684 ERS367097 ERX427267 GENOMIC 9012449 412264000 2014-03-18 SC_RUN_11860_4#10 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460926/11860_4#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460926/11860_4#10.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461256 SC_EXP_11860_7#67 206 1cb54434ca867cbc773596c37c2686e4;cf33570fec74fd986d35a2e5b0b65e9a 1313 ae724cb09dc1f34d8df73c83698e6ffa;f0e37ae4b419f5f85aa307b02f23e5b8 SAMEA2239106 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461256/ERR461256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461256/ERR461256_2.fastq.gz 4241488 WGS 2000122-sc-2013-11-05T12:08:01Z-1750476 RANDOM 137531904;144350298 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461256/ERR461256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461256/ERR461256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461256/11860_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461256/11860_7#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461256/ERR461256_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461256/ERR461256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461256/11860_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461256/11860_7#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 232133561;6971 ERS367918 ERX427597 GENOMIC 9014908 424148800 2014-03-18 SC_RUN_11860_7#67 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461256/11860_7#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461256/11860_7#67.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR460967 SC_EXP_11860_4#53 217 10f9b290a76651634e97cdf587cd25a1;19e5e8cdc510ea411699e9cc210bc049 1313 22646ddc63e2c551b376cf60b408b825;b1a8ae49cf4193c43875617f90d32302 SAMEA2238326 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460967/ERR460967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460967/ERR460967_2.fastq.gz 3983068 WGS 2061564-sc-2013-11-05T11:54:38Z-1749684 RANDOM 131780791;137052891 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460967/ERR460967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460967/ERR460967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460967/11860_4#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460967/11860_4#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460967/ERR460967_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460967/ERR460967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460967/11860_4#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460967/11860_4#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 221150289;6389 ERS367138 ERX427308 GENOMIC 9012490 398306800 2014-03-18 SC_RUN_11860_4#53 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460967/11860_4#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460967/11860_4#53.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#53 ERR449257 SC_EXP_11826_1#71 238 acd272b30b4a4401dc5977d506282c49;9925241c88e04366335e236e95533534 1313 202e9bc67309f25851fa64ce0838b293;017111deadb47fdd53f31a4ff66fc47a SAMEA2161513 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449257/ERR449257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449257/ERR449257_2.fastq.gz 3870360 WGS 5817_99-sc-2013-07-03T13:34:18Z-1659346 RANDOM 127200885;130304571 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449257/ERR449257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449257/ERR449257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449257/11826_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449257/11826_1#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449257/ERR449257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449257/ERR449257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449257/11826_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449257/11826_1#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 211464922;6292 ERS322519 ERX415629 GENOMIC 8949174 387036000 2014-03-04 SC_RUN_11826_1#71 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449257/11826_1#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449257/11826_1#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#71 ERR433745 SC_EXP_11657_8#54 250 9d288a089dfa986f90aeb64f91431cab;8f228dd35a1eb5ff4819f1464383d79f 1313 3887ea1a11cca7320f46bce9a152a435;321fc489821bfab060372f60a2ead8d4 SAMEA2204208 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433745/ERR433745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433745/ERR433745_2.fastq.gz 4462234 WGS PATH5919-sc-2013-10-09T11:57:19Z-1712801 RANDOM 156038887;161914598 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433745/ERR433745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433745/ERR433745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433745/11657_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433745/11657_8#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433745/ERR433745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433745/ERR433745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433745/11657_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433745/11657_8#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262221094;7302 ERS356719 ERX400020 GENOMIC 8657150 446223400 2014-02-18 SC_RUN_11657_8#54 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433745/11657_8#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433745/11657_8#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_8#54 ERR433848 SC_EXP_11658_1#82 235 3af722b6658538d5ba5d3838bfa0cb5a;40fdb5838d0998ca18a59b43094b8256 1313 dacd477e400fbf4d9543e07b7c91f080;75d64497c33051f3e08d6ec4e71cf609 SAMEA2203380 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433848/ERR433848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433848/ERR433848_2.fastq.gz 5208830 WGS PNI0242-sc-2013-10-09T11:41:51Z-1708895 RANDOM 167939605;181572613 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433848/ERR433848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433848/ERR433848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433848/11658_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433848/11658_1#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433848/ERR433848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433848/ERR433848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433848/11658_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433848/11658_1#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289882056;8352 ERS355884 ERX400123 GENOMIC 8640064 520883000 2014-02-18 SC_RUN_11658_1#82 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433848/11658_1#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433848/11658_1#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_1#82 ERR433865 SC_EXP_11658_2#9 231 88e6004574188fe196e7db3fba091e8b;1909d80180da4608856683c4882aa2fc 1313 d1f57a07d41109094270c9c4daa917ca;e4d8a731107064f109cff38553474b39 SAMEA2204161 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433865/ERR433865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433865/ERR433865_2.fastq.gz 4352600 WGS PATH3358-sc-2013-10-09T11:56:28Z-1712754 RANDOM 142871733;147710019 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433865/ERR433865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433865/ERR433865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433865/11658_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433865/11658_2#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433865/ERR433865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433865/ERR433865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433865/11658_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433865/11658_2#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239424990;7064 ERS356672 ERX400140 GENOMIC 8593304 435260000 2014-02-18 SC_RUN_11658_2#9 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433865/11658_2#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433865/11658_2#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#9 ERR129056 SC_EXP_7622_2#32 219 8a0e1adf3cf35d8a7c097589f008e3fe 1313 d209b1fd66de7d760cbc82941632c6a9;0b28167112f71539897178e90ea6ba2c SAMEA1463102 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129056/ERR129056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129056/ERR129056_2.fastq.gz 2940357 WGS BR1098-sc-2011-11-08T10:06:45Z-1298315 RANDOM 314974178;324673330 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129056/ERR129056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129056/ERR129056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129056/7622_2#32.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129056/ERR129056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129056/ERR129056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129056/7622_2#32.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 614454953 ERS069947 ERX105197 GENOMIC 4336465 588071400 2012-05-28 SC_RUN_7622_2#32 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129056/7622_2#32.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129040 SC_EXP_7622_2#16 219 da8fbd1b2ea34c5b17680c3d06135335 1313 30b21e59de6fb9ebbc16f902973ecb42;68cac94a19861afdea4c1917f43b4de4 SAMEA1463091 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129040/ERR129040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129040/ERR129040_2.fastq.gz 2832271 WGS BR1048-sc-2011-11-08T10:06:33Z-1298299 RANDOM 302470019;311240196 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129040/ERR129040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129040/ERR129040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129040/7622_2#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129040/ERR129040_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129040/ERR129040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129040/7622_2#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 592740356 ERS069931 ERX105181 GENOMIC 4336449 566454200 2012-05-28 SC_RUN_7622_2#16 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129040/7622_2#16.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129188 SC_EXP_7622_5#68 225 d396313a1359c4cbd5ff98d6234b5a2a 1313 9bd621bb592ffcc69624a0aff87ae7f6;e266541bc5f4ad2f274fdf79f6b59fdd SAMEA1463089 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129188/ERR129188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129188/ERR129188_2.fastq.gz 2574215 WGS ND6005-sc-2011-11-08T10:08:21Z-1298447 RANDOM 273697811;281856935 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129188/ERR129188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129188/ERR129188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129188/7622_5#68.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129188/ERR129188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129188/ERR129188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129188/7622_5#68.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 541943890 ERS070079 ERX105329 GENOMIC 4336597 514843000 2012-05-28 SC_RUN_7622_5#68 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129188/7622_5#68.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129124 SC_EXP_7622_4#4 221 d74e24df6cc6f7a8b4844d5c72b20fe1 1313 ec8281f3bf2916e589af4932f918ef8d;56929b6d4423863babb4e4113f27bea4 SAMEA1463070 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129124/ERR129124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129124/ERR129124_2.fastq.gz 2854879 WGS GL3078-sc-2011-11-08T10:07:35Z-1298383 RANDOM 306351658;313415699 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129124/ERR129124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129124/ERR129124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129124/7622_4#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129124/ERR129124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129124/ERR129124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129124/7622_4#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 604198462 ERS070015 ERX105265 GENOMIC 4336533 570975800 2012-05-28 SC_RUN_7622_4#4 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129124/7622_4#4.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR056781 SC_EXP_6805_3#3 233 06bd965115bb3975fa74111325380e4f 1313 5ca2380b5b32901f62e380c1e0dd2d30;92241a8125152604d9e9a83aafc7bc85 SAMEA1025354 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056781/ERR056781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056781/ERR056781_2.fastq.gz 6359101 WGS SMRU1443-sc-2011-01-27-1061656 RANDOM 337419332;350107224 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056781/ERR056781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056781/ERR056781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056781/6805_3#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056781/ERR056781_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056781/ERR056781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056781/6805_3#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 866183518 ERS020953 ERX034625 GENOMIC 3441212 953865150 2011-11-29 SC_RUN_6805_3#3 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056781/6805_3#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR068039 SC_EXP_7001_3#11 224 044b462d1acfeb99795e85c1fe2c6a0d 1313 22337b29bceda7cc6b49e80d3a279acb;670c9c8dcdfa3e32858a2c3b21523f60 SAMEA1032439 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068039/ERR068039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068039/ERR068039_2.fastq.gz 3863124 WGS 3146-sc-2011-08-01T09:43:59Z-1250018 RANDOM 239879643;232575832 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068039/ERR068039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068039/ERR068039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068039/7001_3#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068039/ERR068039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068039/ERR068039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068039/7001_3#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 605198082 ERS043953 ERX045902 GENOMIC 3758206 579468600 2012-01-16 SC_RUN_7001_3#11 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068039/7001_3#11.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR065321 SC_EXP_6925_2#84 242 b3e15f7ec5753316dcefea2b957e86c6 1313 4cd7e338d8e099bc248451b4e9cb0405;d5a7911a23779762a9e5435ba000107c SAMEA1032420 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065321/ERR065321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065321/ERR065321_2.fastq.gz 3575543 WGS 3065-sc-2011-08-01T09:43:07Z-1249950 RANDOM 196330801;198891190 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065321/ERR065321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065321/ERR065321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065321/6925_2#84.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065321/ERR065321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065321/ERR065321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065321/6925_2#84.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 517465957 ERS043885 ERX043294 GENOMIC 3610894 536331450 2012-01-05 SC_RUN_6925_2#84 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065321/6925_2#84.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR065302 SC_EXP_6925_1#64 245 f20155bdf8fbb4340769d6a8f2e56825 1313 1f85e359cfffa5381fa3bbe391ecab1a;facd2d6c63e786462ca20ec0afb1c210 SAMEA1032506 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065302/ERR065302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065302/ERR065302_2.fastq.gz 3960732 WGS 3046-sc-2011-08-01T09:42:54Z-1249931 RANDOM 229552041;233442889 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065302/ERR065302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065302/ERR065302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065302/6925_1#64.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065302/ERR065302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065302/ERR065302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065302/6925_1#64.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 589886893 ERS043866 ERX043275 GENOMIC 3610874 594109800 2012-01-05 SC_RUN_6925_1#64 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065302/6925_1#64.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR2612044 SC_EXP_23164_8#84 411 c7cddf7f3c0544aa76189128f93f1bf5;fca620ad9a7586e79449e9c89ecf6437 1313 f22876d56c09d5fc41a977070e65a26c;4e263ee3152f7b63b2fd0550fa59fc59 SAMEA4707873 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/004/ERR2612044/ERR2612044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/004/ERR2612044/ERR2612044_2.fastq.gz 3581466 WGS ba255770-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 70977922;75581809 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/004/ERR2612044/ERR2612044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/004/ERR2612044/ERR2612044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612044/23164_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612044/23164_8#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/004/ERR2612044/ERR2612044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/004/ERR2612044/ERR2612044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612044/23164_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612044/23164_8#84.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 104744362;5854 ERS2528033 ERX2628699 GENOMIC DN488670S:E2 447683250 2018-06-04 SC_RUN_23164_8#84 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612044/23164_8#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612044/23164_8#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#84 ERR2091265 SC_EXP_22841_4#156 439 ab663d495a38f4780ac461d31b4b4871;f9edf8c00cfda9eced2cf18799eef404 1313 3e28fd8eae9559f7f2f59d6a8e00820a;92a2de89a5ce7d3f01e5303878205fc0 SAMEA104035462 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091265/ERR2091265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091265/ERR2091265_2.fastq.gz 2555772 WGS a1915130-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55039819;58873321 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091265/ERR2091265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091265/ERR2091265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091265/22841_4#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091265/22841_4#156.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091265/ERR2091265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091265/ERR2091265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091265/22841_4#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091265/22841_4#156.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80779083;4204 ERS1699355 ERX2148059 GENOMIC DN477153Q:E8 319471500 2017-08-08 SC_RUN_22841_4#156 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091265/22841_4#156.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091265/22841_4#156.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#156 ERR2091281 SC_EXP_22841_4#172 459 342d17457347a4573c0ee08c579f849f;867bd69f580d69f73e4502c0da952028 1313 5362887efb3ddb595e9bb61e59aa40fe;8bbf0686562bb31986ce2ae504d832be SAMEA104035479 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091281/ERR2091281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091281/ERR2091281_2.fastq.gz 2381616 WGS a23188d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 50274641;55094549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091281/ERR2091281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091281/ERR2091281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091281/22841_4#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091281/22841_4#172.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091281/ERR2091281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091281/ERR2091281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091281/22841_4#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091281/22841_4#172.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74849914;3968 ERS1699372 ERX2148075 GENOMIC DN477153Q:F10 297702000 2017-08-08 SC_RUN_22841_4#172 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091281/22841_4#172.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091281/22841_4#172.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#172 ERR2091091 SC_EXP_22841_3#170 416 a1aafb7e31e0324e89bd1c1c38cd95e4;5489412843e353b17c9ea7fc315eed62 1313 9f78d576378407635a06bdc3b3bdd088;a1dfd7a166713aa168d8e92869decf28 SAMEA104035952 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091091/ERR2091091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091091/ERR2091091_2.fastq.gz 2635256 WGS cb52b590-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58629474;64570123 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091091/ERR2091091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091091/ERR2091091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091091/22841_3#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091091/22841_3#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091091/ERR2091091_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091091/ERR2091091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091091/22841_3#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091091/22841_3#170.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88193967;4344 ERS1699845 ERX2147885 GENOMIC DN483670V:E10 329407000 2017-08-08 SC_RUN_22841_3#170 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091091/22841_3#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091091/22841_3#170.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#170 ERR2090999 SC_EXP_22841_3#78 396 794d1eb80d6a05ebfef7e0861ddbb0a0;34a1ef40d72239c437730c28ef954e84 1313 705f97ca4994d37b8758f1fd008ce6a5;83eda2403509a47222f965ede35cb51d SAMEA104035855 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090999/ERR2090999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090999/ERR2090999_2.fastq.gz 3038286 WGS c354cf90-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 69119261;72100188 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090999/ERR2090999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090999/ERR2090999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090999/22841_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090999/22841_3#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090999/ERR2090999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090999/ERR2090999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090999/22841_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090999/22841_3#78.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 100233360;4899 ERS1699748 ERX2147793 GENOMIC DN483669F:G10 379785750 2017-08-08 SC_RUN_22841_3#78 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090999/22841_3#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090999/22841_3#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#78 ERR2090815 SC_EXP_22841_2#84 407 16ff2ebea26f1c99c5d351a996f7eb29;dc85acde1ed83fb60b6b64d17b40c26f 1313 6513587eedc3f19b127d98c6ebe534ad;7d6333f4b087d204d21b9095a752b2a1 SAMEA104035663 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090815/ERR2090815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090815/ERR2090815_2.fastq.gz 2656902 WGS b2ead870-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60097032;64175452 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090815/ERR2090815_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090815/ERR2090815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090815/22841_2#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090815/22841_2#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090815/ERR2090815_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090815/ERR2090815_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090815/22841_2#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090815/22841_2#84.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88692325;4396 ERS1699556 ERX2147609 GENOMIC DN483653U:D11 332112750 2017-08-08 SC_RUN_22841_2#84 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090815/22841_2#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090815/22841_2#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#84 ERR2090755 SC_EXP_22841_2#24 369 66bf8e5ca8d038368449dd51242e2866;6a5965c2870f03c7665f0bee2beda519 1313 26d95557a61bb90fc001be65b036a3d4;91ee7af0e6ff9ca33f825bb25be3082b SAMEA104035601 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090755/ERR2090755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090755/ERR2090755_2.fastq.gz 2946540 WGS b05f99b0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 67505936;68681146 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090755/ERR2090755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090755/ERR2090755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090755/22841_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090755/22841_2#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090755/ERR2090755_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090755/ERR2090755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090755/22841_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090755/22841_2#24.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 97036166;4786 ERS1699494 ERX2147549 GENOMIC DN483653U:H3 368317500 2017-08-08 SC_RUN_22841_2#24 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090755/22841_2#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090755/22841_2#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#24 ERR2090808 SC_EXP_22841_2#77 408 d404b383557e578e3729d6ebb3fc6a42;330ef87064be422242d5e97d74752367 1313 7809ebf552b6ede7293547bb00194ddd;7ffc9d2b5c65821e934e5e5b8fb63125 SAMEA104035656 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090808/ERR2090808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090808/ERR2090808_2.fastq.gz 2816242 WGS b2a43280-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 63616504;67240765 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090808/ERR2090808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090808/ERR2090808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090808/22841_2#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090808/22841_2#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090808/ERR2090808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090808/ERR2090808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090808/22841_2#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090808/22841_2#77.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93598266;4640 ERS1699549 ERX2147602 GENOMIC DN483653U:E10 352030250 2017-08-08 SC_RUN_22841_2#77 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090808/22841_2#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090808/22841_2#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#77 ERR2090623 SC_EXP_22841_1#82 428 4e5ba42730b75c04979a6ff925c64867;b97cd449ac20d8982576af5ff829420c 1313 c6ae68b81e87a04f8f7930f1b57c2009;179683d51a2c83b1031261b4d4e57597 SAMEA104035277 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090623/ERR2090623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090623/ERR2090623_2.fastq.gz 2114830 WGS 91654d70-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 43993373;44645377 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090623/ERR2090623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090623/ERR2090623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090623/22841_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090623/22841_1#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090623/ERR2090623_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090623/ERR2090623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090623/22841_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090623/22841_1#82.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62012828;3526 ERS1699170 ERX2147417 GENOMIC DN477155S:B11 264353750 2017-08-08 SC_RUN_22841_1#82 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090623/22841_1#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090623/22841_1#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#82 ERR2090768 SC_EXP_22841_2#37 392 f86b45bd626ce362a4a843cd96ee4afc;adb95444c1f7712b0dd3178f6afdcd5b 1313 aa14fc5806e19986729723f86535859a;bc5a6c53a953790eaade4666d85c4830 SAMEA104035615 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090768/ERR2090768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090768/ERR2090768_2.fastq.gz 2797496 WGS b0e82aa0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 65230370;67058254 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090768/ERR2090768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090768/ERR2090768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090768/22841_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090768/22841_2#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090768/ERR2090768_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090768/ERR2090768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090768/22841_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090768/22841_2#37.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93807707;4570 ERS1699508 ERX2147562 GENOMIC DN483653U:E5 349687000 2017-08-08 SC_RUN_22841_2#37 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090768/22841_2#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090768/22841_2#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#37 ERR2090586 SC_EXP_22841_1#45 449 3185be60b3a7ff0f4490797b88695e7f;c3c160d563ba348a3e233efcbe6c7f60 1313 7185f8e8b58d8375a2140c973be44a78;3401f9c0eb951ae83fa208ad1ad6cc47 SAMEA104035240 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090586/ERR2090586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090586/ERR2090586_2.fastq.gz 1981742 WGS 8ff60600-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 41498046;42809770 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090586/ERR2090586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090586/ERR2090586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090586/22841_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090586/22841_1#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090586/ERR2090586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090586/ERR2090586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090586/22841_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090586/22841_1#45.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 58785848;3331 ERS1699133 ERX2147380 GENOMIC DN477155S:E6 247717750 2017-08-08 SC_RUN_22841_1#45 109 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090586/22841_1#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090586/22841_1#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#45 ERR2089535 SC_EXP_21999_8#90 448 a9860cf57c487a725d4811338d83610c;41b80797443f46149e1d753adf764d49 1313 276b6fa05494d12066f24b4b7f759093;d3b287cf81f54bff1df0d0efbbaa35ba SAMEA104154804 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089535/ERR2089535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089535/ERR2089535_2.fastq.gz 1593744 WGS 72f4efa0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 31136531;33009015 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089535/ERR2089535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089535/ERR2089535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089535/21999_8#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089535/21999_8#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089535/ERR2089535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089535/ERR2089535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089535/21999_8#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089535/21999_8#90.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 44338368;2681 ERS1813822 ERX2146329 GENOMIC DN476960M:B1 199218000 2017-08-08 SC_RUN_21999_8#90 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089535/21999_8#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089535/21999_8#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#90 ERR2090403 SC_EXP_22667_7#131 455 aa7c2a7628d148591e1600e4159ca5f6;f511a906f718dc68cbe61ea8742128ad 1313 d0b3ea60aa7e7e248824884d3370cabf;c950f4d90a24d2948e9266c20fefa9ce SAMEA104035127 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090403/ERR2090403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090403/ERR2090403_2.fastq.gz 3115694 WGS 8717d220-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 63403717;68799244 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090403/ERR2090403_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090403/ERR2090403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090403/22667_7#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090403/22667_7#131.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090403/ERR2090403_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090403/ERR2090403_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090403/22667_7#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090403/22667_7#131.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 94167848;5052 ERS1699020 ERX2147197 GENOMIC DN486303N:C5 389461750 2017-08-08 SC_RUN_22667_7#131 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090403/22667_7#131.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090403/22667_7#131.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#131 ERR2090410 SC_EXP_22667_7#138 435 82c08f8f07217f28261ba8a5f8d3c947;6e16fbb567dc96a7643aa36884b8c5ff 1313 900ede3300c0b571b6baab9b828bcce1;153440495f9de7bc8583a9e6614cf09e SAMEA104035134 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090410/ERR2090410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090410/ERR2090410_2.fastq.gz 2926404 WGS 876e7da0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58242238;62785606 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090410/ERR2090410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090410/ERR2090410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090410/22667_7#138.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090410/22667_7#138.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090410/ERR2090410_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090410/ERR2090410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090410/22667_7#138.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090410/22667_7#138.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85773664;4803 ERS1699027 ERX2147204 GENOMIC DN486303N:B6 365800500 2017-08-08 SC_RUN_22667_7#138 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090410/22667_7#138.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090410/22667_7#138.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#138 ERR2089767 SC_EXP_22027_1#147 451 dc3bf7810bb83a1b5aed003742c93d03;c57af000b551ebc45093d955556995d4 1313 26218c71087d822b61e4363f436967f9;923084577b7928c3c0943cce7d7f1023 SAMEA104155122 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089767/ERR2089767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089767/ERR2089767_2.fastq.gz 2425216 WGS 9a20b500-c37a-11e6-b158-3c4a9275d6c8 RANDOM 47312164;50414638 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089767/ERR2089767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089767/ERR2089767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089767/22027_1#147.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089767/22027_1#147.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089767/ERR2089767_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089767/ERR2089767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089767/22027_1#147.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089767/22027_1#147.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69066918;4017 ERS1814140 ERX2146561 GENOMIC DN477278F:C8 303152000 2017-08-08 SC_RUN_22027_1#147 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089767/22027_1#147.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089767/22027_1#147.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#147 ERR2089430 SC_EXP_21999_7#168 461 bcda8d7f8197c8a19d1cccce98a451c3;29f7fa27733c108585aecde60179e64f 1313 2187f68da3da57bbce4882349f8e2ca0;8bf19bba21d0df04dd0a2a9748f294e4 SAMEA104154695 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089430/ERR2089430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089430/ERR2089430_2.fastq.gz 2972934 WGS 685b5020-c37a-11e6-b158-3c4a9275d6c8 RANDOM 61114625;66299209 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089430/ERR2089430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089430/ERR2089430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089430/21999_7#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089430/21999_7#168.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089430/ERR2089430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089430/ERR2089430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089430/21999_7#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089430/21999_7#168.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91341445;4898 ERS1813713 ERX2146224 GENOMIC DN476874P:A10 371616750 2017-08-08 SC_RUN_21999_7#168 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089430/21999_7#168.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089430/21999_7#168.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#168 ERR2089374 SC_EXP_21999_7#112 465 bb27c6423b7f38f151ec40b3d7fc0b04;1319600197c832465a708e0d054e9fdb 1313 425bfca1e0b5873734747cf2d981169b;20752071c3cacbbbd7387ab751e56748 SAMEA104154639 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089374/ERR2089374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089374/ERR2089374_2.fastq.gz 2111118 WGS 65e4aad0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 44276662;47623272 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089374/ERR2089374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089374/ERR2089374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089374/21999_7#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089374/21999_7#112.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089374/ERR2089374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089374/ERR2089374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089374/21999_7#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089374/21999_7#112.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65098539;3534 ERS1813657 ERX2146168 GENOMIC DN476874P:A3 263889750 2017-08-08 SC_RUN_21999_7#112 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089374/21999_7#112.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089374/21999_7#112.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#112 ERR1947758 SC_EXP_21946_6#238 455 cf28d9aae0c82071e29e6e6464d585c7;7c1c883f5400e0b4a0849fb3efd39b0c 1313 ef16e829e15a6802861d80079e4cda8e;8a6a573aa18a5a25502b27ec1e9a1489 SAMEA4561053 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947758/ERR1947758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947758/ERR1947758_2.fastq.gz 2752204 WGS 03b0b6e0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 71586184;99969965 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947758/ERR1947758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947758/ERR1947758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947758/21946_6#238.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947758/21946_6#238.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947758/ERR1947758_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947758/ERR1947758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947758/21946_6#238.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947758/21946_6#238.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 126197999;4600 ERS1460232 ERX2013545 GENOMIC 18471346 415582804 2017-04-25 SC_RUN_21946_6#238 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947758/21946_6#238.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947758/21946_6#238.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947749 SC_EXP_21946_6#229 453 4e009eb3b9a526360911a6f9cb0df3b8;2e6403f663fa4b1bdaa04018e7d988b3 1313 16752a650d3eb308bb0c8c3b2b8cab80;c603bffff1ad2247a59e9cfce1d3a69a SAMEA4561044 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947749/ERR1947749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947749/ERR1947749_2.fastq.gz 2840762 WGS 0361ac80-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 73551808;102512617 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947749/ERR1947749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947749/ERR1947749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947749/21946_6#229.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947749/21946_6#229.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947749/ERR1947749_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947749/ERR1947749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947749/21946_6#229.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947749/21946_6#229.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 129656021;4760 ERS1460223 ERX2013536 GENOMIC 18471333 428955062 2017-04-25 SC_RUN_21946_6#229 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947749/21946_6#229.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947749/21946_6#229.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR2089417 SC_EXP_21999_7#155 459 46e673eee97c43a084c5ffadfa08ade1;e13996ffb762a5267c086a62e162f3f2 1313 332b39f30d05231e97ebfa9b8de5052f;15a6c282827890d1507a290fbd6b7a4f SAMEA104154682 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089417/ERR2089417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089417/ERR2089417_2.fastq.gz 2349214 WGS 67d72c00-c37a-11e6-b158-3c4a9275d6c8 RANDOM 49349851;52646824 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089417/ERR2089417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089417/ERR2089417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089417/21999_7#155.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089417/21999_7#155.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089417/ERR2089417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089417/ERR2089417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089417/21999_7#155.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089417/21999_7#155.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72111474;3924 ERS1813700 ERX2146211 GENOMIC DN476874P:D8 293651750 2017-08-08 SC_RUN_21999_7#155 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089417/21999_7#155.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089417/21999_7#155.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#155 ERR1947743 SC_EXP_21946_6#223 465 81a078d56cf09e2b8f38e26fb7a48e19;ed7612ced3581b11f1c8d12f382e808e 1313 0ea4dbe36f620d564999752c26cf8ea2;3868a96931cffc1972b2ed2a92d214cd SAMEA4561038 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947743/ERR1947743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947743/ERR1947743_2.fastq.gz 2253660 WGS 032eb5a0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58667283;81549217 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947743/ERR1947743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947743/ERR1947743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947743/21946_6#223.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947743/21946_6#223.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947743/ERR1947743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947743/ERR1947743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947743/21946_6#223.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947743/21946_6#223.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103459704;3803 ERS1460217 ERX2013530 GENOMIC 18471356 340302660 2017-04-25 SC_RUN_21946_6#223 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947743/21946_6#223.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947743/21946_6#223.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947739 SC_EXP_21946_6#219 458 0019db01ad101cf7566ac802f3ec9b4c;adf4a4a04e888d41132d54ea3069a462 1313 0c90e7855e5d0b953d26e2a352bccac7;4bd997504550dbf722c4cdfea69f553f SAMEA4561034 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947739/ERR1947739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947739/ERR1947739_2.fastq.gz 2432500 WGS 030beb60-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 63223157;89005202 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947739/ERR1947739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947739/ERR1947739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947739/21946_6#219.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947739/21946_6#219.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947739/ERR1947739_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947739/ERR1947739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947739/21946_6#219.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947739/21946_6#219.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 112092642;4101 ERS1460213 ERX2013526 GENOMIC 18471403 367307500 2017-04-25 SC_RUN_21946_6#219 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947739/21946_6#219.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947739/21946_6#219.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947686 SC_EXP_21946_6#166 452 4dab583485839662f7265ac006139e75;0921da49e16f4130e6bfc3a418d9e845 1313 01e3cbf19d1998991cd867b504f3abdf;60596db7d88c67a052ae91c492398d0a SAMEA17722918 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947686/ERR1947686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947686/ERR1947686_2.fastq.gz 2957380 WGS 40dcf650-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 76963580;108241343 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947686/ERR1947686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947686/ERR1947686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947686/21946_6#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947686/21946_6#166.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947686/ERR1947686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947686/ERR1947686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947686/21946_6#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947686/21946_6#166.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 137155294;4935 ERS1461745 ERX2013473 GENOMIC 18471445 446564380 2017-04-25 SC_RUN_21946_6#166 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947686/21946_6#166.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947686/21946_6#166.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947593 SC_EXP_21946_6#73 456 ae042fdc024cd36338ddc8c6b7bcd7db;29d19431f81b827f9d269adedeac4b2d 1313 1a2afeb23ff07ed8381f70158af63232;f67be1f24b26680029774d2b8f7cf952 SAMEA4561623 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947593/ERR1947593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947593/ERR1947593_2.fastq.gz 2882170 WGS 3800be40-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 76802684;105239918 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947593/ERR1947593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947593/ERR1947593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947593/21946_6#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947593/21946_6#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947593/ERR1947593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947593/ERR1947593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947593/21946_6#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947593/21946_6#73.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 134323797;4753 ERS1460802 ERX2013380 GENOMIC 18471627 435207670 2017-04-25 SC_RUN_21946_6#73 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947593/21946_6#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947593/21946_6#73.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947668 SC_EXP_21946_6#148 442 662006b091d5305bb5b4e96ec318a17c;bdcfbc91fca81bcce4d78fc6f58f0b11 1313 38827e96fff85cb9bb47a7b191e33ce6;835a56962bca13f0ecd91ab75d384bb6 SAMEA17709418 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947668/ERR1947668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947668/ERR1947668_2.fastq.gz 2506776 WGS 40164af0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 65027333;89821598 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947668/ERR1947668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947668/ERR1947668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947668/21946_6#148.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947668/21946_6#148.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947668/ERR1947668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947668/ERR1947668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947668/21946_6#148.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947668/21946_6#148.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 113638874;4205 ERS1461727 ERX2013455 GENOMIC 18471514 378523176 2017-04-25 SC_RUN_21946_6#148 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947668/21946_6#148.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947668/21946_6#148.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947569 SC_EXP_21946_6#49 465 be7dec2ed03328420867c943bbd3c928;1ba16721d5fc6bb2b0a05e35fb1d86c4 1313 ea2763af60e74c66806a354202951fd3;34cd857635d7ad399f8eb3766ef8e828 SAMEA4561598 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947569/ERR1947569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947569/ERR1947569_2.fastq.gz 2059558 WGS 37250440-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53695089;75236534 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947569/ERR1947569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947569/ERR1947569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947569/21946_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947569/21946_6#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947569/ERR1947569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947569/ERR1947569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947569/21946_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947569/21946_6#49.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 94738218;3505 ERS1460777 ERX2013356 GENOMIC 18471624 310993258 2017-04-25 SC_RUN_21946_6#49 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947569/21946_6#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947569/21946_6#49.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947505 SC_EXP_21903_8#351 426 b31a9c3c62166624385b37483d34f3d0;b61e442145900452783c79c003c61b47 1313 e45193dac63a4dc87aeec22976ae1608;85533f5ab8fe2da2a8269acc30eca7ee SAMEA4561533 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947505/ERR1947505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947505/ERR1947505_2.fastq.gz 1826310 WGS 3005be70-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 46737009;67243214 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947505/ERR1947505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947505/ERR1947505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947505/21903_8#351.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947505/21903_8#351.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947505/ERR1947505_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947505/ERR1947505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947505/21903_8#351.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947505/21903_8#351.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 83410498;3125 ERS1460712 ERX2013292 GENOMIC 18453200 275772810 2017-04-25 SC_RUN_21903_8#351 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947505/21903_8#351.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947505/21903_8#351.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947378 SC_EXP_21903_8#224 432 f8c700c5b4705709ec586a6ca597b39b;85ce9821e9f2d149972f4f951d6337e3 1313 8069e3d7acf18479feedb963b8dd09bd;2e2e282250018f791cab675fa9d62e6a SAMEA4561406 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947378/ERR1947378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947378/ERR1947378_2.fastq.gz 2420454 WGS 25dbf7c0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 62488941;90727735 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947378/ERR1947378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947378/ERR1947378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947378/21903_8#224.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947378/21903_8#224.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947378/ERR1947378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947378/ERR1947378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947378/21903_8#224.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947378/21903_8#224.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 113092287;4031 ERS1460585 ERX2013165 GENOMIC 18453063 365488554 2017-04-25 SC_RUN_21903_8#224 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947378/21903_8#224.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947378/21903_8#224.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947326 SC_EXP_21903_8#172 430 52a8a6ec97655243be03f65c74e36477;7b81c40b129a56be8cacfc91cac1b3c6 1313 831aca2b08f322cfe9dd58b03dbf86d8;6294def0371baa951a63cc12bbec1cfc SAMEA4561353 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947326/ERR1947326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947326/ERR1947326_2.fastq.gz 2103506 WGS 1e41b590-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 52860089;77166872 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947326/ERR1947326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947326/ERR1947326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947326/21903_8#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947326/21903_8#172.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947326/ERR1947326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947326/ERR1947326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947326/21903_8#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947326/21903_8#172.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 95830143;3579 ERS1460532 ERX2013113 GENOMIC 18430379 317629406 2017-04-25 SC_RUN_21903_8#172 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947326/21903_8#172.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947326/21903_8#172.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947219 SC_EXP_21903_8#65 424 c0a8fd97cdb33b3eed585437394be487;4a9b1b5b003a2f29d7ae08cfa40bd461 1313 46fba47aeb595d2bc5cd2adffa24f262;33400e95b119ed7a50b18b21fb8c2312 SAMEA4561245 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947219/ERR1947219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947219/ERR1947219_2.fastq.gz 2695804 WGS 14ccbff0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 67196855;96456234 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947219/ERR1947219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947219/ERR1947219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947219/21903_8#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947219/21903_8#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947219/ERR1947219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947219/ERR1947219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947219/21903_8#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947219/21903_8#65.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 120616492;4517 ERS1460424 ERX2013006 GENOMIC 18430197 407066404 2017-04-25 SC_RUN_21903_8#65 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947219/21903_8#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947219/21903_8#65.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947179 SC_EXP_21903_8#25 446 2ba5e6bdcbbe5e65a62fa60fe6e6c01e;d4cafd2992cafe32b24b4cd7f21a3dd9 1313 90147494e20408f58de40b76b73a908c;4f7d8553217fa4b6e0efc36fe32fa779 SAMEA4561205 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947179/ERR1947179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947179/ERR1947179_2.fastq.gz 2304086 WGS 1343d600-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57692538;85756031 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947179/ERR1947179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947179/ERR1947179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947179/21903_8#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947179/21903_8#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947179/ERR1947179_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947179/ERR1947179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947179/21903_8#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947179/21903_8#25.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106086423;3932 ERS1460384 ERX2012966 GENOMIC 18430192 347916986 2017-04-25 SC_RUN_21903_8#25 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947179/21903_8#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947179/21903_8#25.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1202528 SC_EXP_17966_5#78 464 5836f6a5b2ce7c0102763d23091c9ee3;7fbc58fe73c04871a0dba549c9d93197 1313 093e50089a6593cbbe2bea16a16b092b;6e3ca8d312d7ec0aca7529476f2a5ee5 SAMEA3389982 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202528/ERR1202528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202528/ERR1202528_2.fastq.gz 1954072 WGS GPS_MW_BHA9GL-sc-2296228 RANDOM 35209995;34857548 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202528/ERR1202528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202528/ERR1202528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202528/17966_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202528/17966_5#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202528/ERR1202528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202528/ERR1202528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202528/17966_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202528/17966_5#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 49021074;3326 ERS726085 ERX1274770 GENOMIC 15025524 244259000 2016-01-12 SC_RUN_17966_5#78 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202528/17966_5#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202528/17966_5#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#78 ERR1202536 SC_EXP_17966_5#86 464 b7e8b65ad9ae4e437c7fbc8dba238c34;6026572f3eee96dd642d21ee689643eb 1313 7de1f009f1e93fb648512a161c6de60f;236da5a2f4fbc284e884e0468bd9b8eb SAMEA3389998 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202536/ERR1202536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202536/ERR1202536_2.fastq.gz 1932934 WGS GPS_MW_BHB4L6-sc-2296244 RANDOM 34775878;35468248 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202536/ERR1202536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202536/ERR1202536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202536/17966_5#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202536/17966_5#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202536/ERR1202536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202536/ERR1202536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202536/17966_5#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202536/17966_5#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 48952741;3260 ERS726101 ERX1274778 GENOMIC 15025525 241616750 2016-01-12 SC_RUN_17966_5#86 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202536/17966_5#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202536/17966_5#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#86 ERR1202506 SC_EXP_17966_5#56 464 cb9140e13616d48913ce95d42df1c0f3;4cc775320f3ed45a8cf2db069d964e72 1313 560fbaf2c020e25a011f850182642aec;4d2afcc59ba6e1581adaf6d58a33b5e2 SAMEA3389940 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202506/ERR1202506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202506/ERR1202506_2.fastq.gz 1988300 WGS GPS_MW_1012887-sc-2296186 RANDOM 35758138;35981710 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202506/ERR1202506_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202506/ERR1202506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202506/17966_5#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202506/17966_5#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202506/ERR1202506_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202506/ERR1202506_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202506/17966_5#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202506/17966_5#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 49878823;3350 ERS726043 ERX1274748 GENOMIC 15025545 248537500 2016-01-12 SC_RUN_17966_5#56 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202506/17966_5#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202506/17966_5#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#56 ERR1202388 SC_EXP_17870_8#128 447 3e461411f20d27fe2227c30ebad4c9eb;52b3707783fd76b795f3be72a1ce6092 1313 c24ee1ae49c1b96e1011f371ca300d4b;b143796d8a50f991c6f8997f4490b374 SAMEA3389890 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202388/ERR1202388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202388/ERR1202388_2.fastq.gz 2696384 WGS GPS_MW_BIP1FM_R1-sc-2296134 RANDOM 51776320;56022947 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202388/ERR1202388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202388/ERR1202388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202388/17870_8#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202388/17870_8#128.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202388/ERR1202388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202388/ERR1202388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202388/17870_8#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202388/17870_8#128.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81370291;4469 ERS725993 ERX1274630 GENOMIC 14977579 337048000 2016-01-12 SC_RUN_17870_8#128 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202388/17870_8#128.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202388/17870_8#128.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#128 ERR1192094 SC_EXP_17794_8#83 441 0ead99f2277944c722ed1d182eec34be;587b4e34d34f865bc6083a590790aebd 1313 d119a5550fcc114341229e3e486bacaa;e5f3358642963430625c93859316cb8a SAMEA3381625 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192094/ERR1192094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192094/ERR1192094_2.fastq.gz 2749198 WGS GPS_GM_2136-sc-2279505 RANDOM 53712333;54657909 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192094/ERR1192094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192094/ERR1192094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192094/17794_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192094/17794_8#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192094/ERR1192094_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192094/ERR1192094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192094/17794_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192094/17794_8#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85120674;4579 ERS719884 ERX1265478 GENOMIC 14941565 343649750 2015-12-17 SC_RUN_17794_8#83 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192094/17794_8#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192094/17794_8#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#83 ERR273496 SC_EXP_6649_7#17 254 100dba8264e89f15eb648d334e553500 1313 823939273c2196142ea919ddcd4b18a9;75c9450cdfb70368990fbad50a469c09 SAMEA1888683 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273496/ERR273496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273496/ERR273496_2.fastq.gz 2814146 WGS SMRU545-sc-2011-01-27-1060734 RANDOM 144965412;129699077 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273496/ERR273496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273496/ERR273496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273496/6649_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273496/ERR273496_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273496/ERR273496_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273496/6649_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 400727472 ERS019703 ERX247772 GENOMIC 3037864 422121900 2013-05-13 SC_RUN_6649_7#17 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273496/6649_7#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR067828 SC_EXP_6972_4#13 234 6c013c1f8bcb58ca8c98730bbd4b6e3c 1313 041c6df9cbc9a123cc2a9607844b84b2;dd4c9955a64b2ffdc190e02998b95a23 SAMEA1028911 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067828/ERR067828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067828/ERR067828_2.fastq.gz 4176146 WGS SMRU2605-sc-2011-01-27-1062818 RANDOM 266806872;273123011 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067828/ERR067828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067828/ERR067828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067828/6972_4#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067828/ERR067828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067828/ERR067828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067828/6972_4#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 688311728 ERS022115 ERX045691 GENOMIC 3686280 626421900 2012-01-16 SC_RUN_6972_4#13 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067828/6972_4#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069775 SC_EXP_6999_5#1 246 dba92bbd36c788454de7b2eb1a3be873 1313 fbd93b93254a9cb6d4cdc1268ee572b6;9011fc97ee4d30ffe486312156c6ac19 SAMEA1032706 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069775/ERR069775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069775/ERR069775_2.fastq.gz 4995617 WGS 147587-sc-2011-08-01T09:45:29Z-1250146 RANDOM 289192782;286385698 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069775/ERR069775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069775/ERR069775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069775/6999_5#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069775/ERR069775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069775/ERR069775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069775/6999_5#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 731821222 ERS044081 ERX047628 GENOMIC 3736998 749342550 2012-01-19 SC_RUN_6999_5#1 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069775/6999_5#1.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR069773 SC_EXP_6999_4#22 244 cf8d2991cd8f36b646e7ad6000f46be0 1313 24ca37ea3f75a82caa118a23802fe2a1;7335178f55c736ae48740a1181cd80b1 SAMEA1032471 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069773/ERR069773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069773/ERR069773_2.fastq.gz 6171623 WGS 144370-sc-2011-08-01T09:45:28Z-1250144 RANDOM 358275516;364311303 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069773/ERR069773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069773/ERR069773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069773/6999_4#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069773/ERR069773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069773/ERR069773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069773/6999_4#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 910996375 ERS044079 ERX047626 GENOMIC 3736995 925743450 2012-01-19 SC_RUN_6999_4#22 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069773/6999_4#22.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR066194 SC_EXP_6938_5#19 230 fa87280ee86f7fb7491d235ababd2cba 1313 1cba721af81ea16a7260e7cd380de75d;80e6edeb1c7176dabfe75a05080308bc SAMEA1028888 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066194/ERR066194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066194/ERR066194_2.fastq.gz 3098256 WGS SMRU2659-sc-2011-01-27-1062872 RANDOM 214619995;219643807 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066194/ERR066194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066194/ERR066194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066194/6938_5#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066194/ERR066194_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066194/ERR066194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066194/6938_5#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 548880343 ERS022169 ERX044057 GENOMIC 3651679 464738400 2012-03-19 SC_RUN_6938_5#19 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066194/6938_5#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR047133 SC_EXP_6569_8#9 247 d0ecb703e0116ded1bb7f0569eeff5b2 1313 975f72fedefd16cef46c2e0855d461be;0da100b06de821858f2e050c34a7e535 SAMEA1026697 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047133/ERR047133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047133/ERR047133_2.fastq.gz 2431403 WGS UoS5068-sc-2011-03-11-1098946 RANDOM 149554684;156390533 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047133/ERR047133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047133/ERR047133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047133/6569_8#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047133/ERR047133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047133/ERR047133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047133/6569_8#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 396457856 ERS025136 ERX024195 GENOMIC 2744165 364710450 2011-09-27 SC_RUN_6569_8#9 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047133/6569_8#9.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_8#9 ERR046204 SC_EXP_6512_7#17 241 f8415bac95619f5c4da2ab2c38010c2a 1313 ea272e8f279d17be2c29e66ae9e7f643;f3737d30e791e55b7a2bd869d80b3993 SAMEA1026788 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046204/ERR046204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046204/ERR046204_2.fastq.gz 6175421 WGS UoS4246-sc-2011-02-14-1078433 RANDOM 330227021;328874436 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046204/ERR046204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046204/ERR046204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046204/6512_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046204/ERR046204_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046204/ERR046204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046204/6512_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 822110449 ERS023379 ERX023266 GENOMIC 2735159 926313150 2011-09-20 SC_RUN_6512_7#17 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046204/6512_7#17.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_7#17 ERR046203 SC_EXP_6512_7#16 241 e1adb48556a4be3583600d387735f796 1313 5a776c6a792b3615f6e4afb11de6d28e;b4c1b3c3d2f4b013ab3d88e04238c1fc SAMEA1026803 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046203/ERR046203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046203/ERR046203_2.fastq.gz 9721983 WGS UoS4245-sc-2011-02-14-1078432 RANDOM 516667447;513687680 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046203/ERR046203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046203/ERR046203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046203/6512_7#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046203/ERR046203_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046203/ERR046203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046203/6512_7#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1271329886 ERS023378 ERX023265 GENOMIC 2735158 1458297450 2011-09-20 SC_RUN_6512_7#16 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046203/6512_7#16.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_7#16 ERR046122 SC_EXP_6512_4#3 241 7ab783cd0e10005fd7216c15a83e6dd5 1313 a4a9cc3b91afc40abc512752e5dd6d7b;3fb173c0d51595cc133fbb7ea5746c1d SAMEA1026782 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046122/ERR046122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046122/ERR046122_2.fastq.gz 4281239 WGS UoS3258-sc-2011-02-14-1078351 RANDOM 228643831;225595813 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046122/ERR046122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046122/ERR046122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046122/6512_4#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046122/ERR046122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046122/ERR046122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046122/6512_4#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 570488915 ERS023297 ERX023184 GENOMIC 2734969 642185850 2011-09-20 SC_RUN_6512_4#3 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046122/6512_4#3.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_4#3 ERR046109 SC_EXP_6512_3#14 204 1246374f227da2bcfd783ee4b2c12ae9 1313 ef5035f8eedf7b9d8a594a93d53f2203;a7f84380294103d3a2dfa56ebcb7ede8 SAMEA1026321 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046109/ERR046109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046109/ERR046109_2.fastq.gz 17580776 WGS UoS3234-sc-2011-02-14-1078338 RANDOM 1060931138;1074391300 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046109/ERR046109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046109/ERR046109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046109/6512_3#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046109/ERR046109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046109/ERR046109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046109/6512_3#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 2647617858 ERS023284 ERX023171 GENOMIC 2734313 2637116400 2011-09-20 SC_RUN_6512_3#14 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046109/6512_3#14.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#14 ERR046086 SC_EXP_6512_2#15 206 8ff89e45403d6e505f942e2a0dcca3fd 1313 3f69bb2bf6325d6d02f9b8870c41d92e;4816e0309ccb633bd2ee3399bb3b97aa SAMEA1026388 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046086/ERR046086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046086/ERR046086_2.fastq.gz 6529741 WGS UoS3156-sc-2011-02-14-1078315 RANDOM 372027900;376274593 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046086/ERR046086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046086/ERR046086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046086/6512_2#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046086/ERR046086_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046086/ERR046086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046086/6512_2#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 933796210 ERS023261 ERX023148 GENOMIC 2734265 979461150 2011-09-20 SC_RUN_6512_2#15 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046086/6512_2#15.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_2#15 ERR044953 SC_EXP_6470_6#24 194 b7cf1ba605679478db546600a7188d45 1313 47a0d3ec9c96eb01b57df8315a51948e;b2b8d528dd4c287be5aef968d3bae5d0 SAMEA1026478 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044953/ERR044953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044953/ERR044953_2.fastq.gz 6729703 WGS UoS0315-sc-2011-02-14-1078156 RANDOM 326757582;336794693 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044953/ERR044953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044953/ERR044953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044953/6470_6#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044953/ERR044953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044953/ERR044953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044953/6470_6#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 852570512 ERS023102 ERX022061 GENOMIC 2719183 1009455450 2011-09-06 SC_RUN_6470_6#24 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044953/6470_6#24.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_6#24 ERR044936 SC_EXP_6470_6#7 194 2c006b5f6f94c013b0c8e7c6d600ecc1 1313 cba67c664df999e41934161aaa1836c1;45f912bcf027dab8ff2a256f0311dfe9 SAMEA1026444 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044936/ERR044936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044936/ERR044936_2.fastq.gz 7585718 WGS UoS0284-sc-2011-02-14-1078139 RANDOM 364260813;375971715 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044936/ERR044936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044936/ERR044936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044936/6470_6#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044936/ERR044936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044936/ERR044936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044936/6470_6#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 953216119 ERS023085 ERX022044 GENOMIC 2719166 1137857700 2011-09-06 SC_RUN_6470_6#7 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044936/6470_6#7.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_6#7 ERR044880 SC_EXP_6470_3#23 187 a93c46bcb8ea395d0ef16fa250a2d54d 1313 88ec43db2b6c4af7258e5c21898349e9;f9395ada0a259911b4f22482484f5f67 SAMEA1026652 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044880/ERR044880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044880/ERR044880_2.fastq.gz 7157433 WGS UoS0094-sc-2011-02-14-1078083 RANDOM 357398794;374050111 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044880/ERR044880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044880/ERR044880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044880/6470_3#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044880/ERR044880_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044880/ERR044880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044880/6470_3#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 952671671 ERS023028 ERX021988 GENOMIC 2719110 1073614950 2011-09-06 SC_RUN_6470_3#23 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044880/6470_3#23.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#23 ERR1422585 SC_EXP_19084_8#72 461 655798dedeee088223d950d102258fd3;7ad5ebb8ac4bf6742e04fc604b8c633b 1313 0ea713f5ad2cd0ab5bf71639f33013c1;efbfbb6b0ac08efbe7ce9c3421b26d62 SAMEA3714409 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422585/ERR1422585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422585/ERR1422585_2.fastq.gz 1894304 WGS 4f31db40-41bd-11e5-998e-3c4a9275d6c6 RANDOM 44193966;45048542 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422585/ERR1422585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422585/ERR1422585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422585/19084_8#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422585/19084_8#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422585/ERR1422585_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422585/ERR1422585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422585/19084_8#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422585/19084_8#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64742400;3237 ERS1021558 ERX1493167 GENOMIC 15758469 236788000 2016-05-24 SC_RUN_19084_8#72 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422585/19084_8#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422585/19084_8#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#72 ERR1288981 SC_EXP_18456_1#172 459 0c38c0df214cff4808e9a2685abb8aed;8394c41ff3828c08ad054d283c2aaadd 1313 ed2021ee5f1da9e8ce7bd51bdc513e51;13d6562a3ca725f587285f7fdb70b88a SAMEA3389352 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288981/ERR1288981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288981/ERR1288981_2.fastq.gz 2383280 WGS GPS_MW_1440_UNC-sc-2295827 RANDOM 51916341;53214106 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288981/ERR1288981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288981/ERR1288981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288981/18456_1#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288981/18456_1#172.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288981/ERR1288981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288981/ERR1288981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288981/18456_1#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288981/18456_1#172.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74747719;3939 ERS725455 ERX1360587 GENOMIC 14970459 297910000 2016-02-23 SC_RUN_18456_1#172 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288981/18456_1#172.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288981/18456_1#172.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#172 ERR1422378 SC_EXP_19084_7#49 450 925bd827340fbd9b57171af36139cfd7;d38b839fb9e398446ef28a0869c8385d 1313 04854abc2b82c9e5a0d4df7b530b8814;a1134256ebbba82a2bab639e19e89450 SAMEA3714202 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422378/ERR1422378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422378/ERR1422378_2.fastq.gz 2432356 WGS 45512b80-41bd-11e5-998e-3c4a9275d6c6 RANDOM 55366839;55183412 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422378/ERR1422378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422378/ERR1422378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422378/19084_7#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422378/19084_7#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422378/ERR1422378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422378/ERR1422378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422378/19084_7#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422378/19084_7#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80672504;4040 ERS1021351 ERX1492960 GENOMIC 15737978 304044500 2016-05-24 SC_RUN_19084_7#49 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422378/19084_7#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422378/19084_7#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#49 ERR1214443 SC_EXP_18090_1#123 448 c4ca516afda19fd29d8a0d3f47df66c0;3e488c8957d1b0559260f37af661f660 1313 bc6dacd0378bb0befc8659b6022eb629;af456239b96cd783ecabb6038d74239b SAMEA3431406 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214443/ERR1214443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214443/ERR1214443_2.fastq.gz 2746832 WGS GPS_US_PATH4020-sc-2296580 RANDOM 56184189;63825797 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214443/ERR1214443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214443/ERR1214443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214443/18090_1#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214443/18090_1#123.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/003/ERR1214443/ERR1214443_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/003/ERR1214443/ERR1214443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214443/18090_1#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214443/18090_1#123.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87044035;4547 ERS740691 ERX1286656 GENOMIC 15034854 343354000 2016-01-19 SC_RUN_18090_1#123 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214443/18090_1#123.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214443/18090_1#123.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#123 ERR1288971 SC_EXP_18456_1#162 459 b21b571d9cb2ed80b9b50eb3b5472629;797148c6d0dd94c14f37227db9bc00f2 1313 2107c92f0d6c39d7bbc27e777c143692;3c161cd368a9636d31721d60147ff3d1 SAMEA3389332 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288971/ERR1288971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288971/ERR1288971_2.fastq.gz 2360070 WGS GPS_MW_1273_UNC-sc-2295807 RANDOM 50083258;50775857 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288971/ERR1288971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288971/ERR1288971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288971/18456_1#162.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288971/18456_1#162.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288971/ERR1288971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288971/ERR1288971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288971/18456_1#162.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288971/18456_1#162.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71680836;3962 ERS725435 ERX1360577 GENOMIC 14970434 295008750 2016-02-23 SC_RUN_18456_1#162 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288971/18456_1#162.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288971/18456_1#162.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#162 ERR1202595 SC_EXP_17966_5#145 464 c345dd0b213e9a211b4f27dd591b6eeb;838cc41899595a89af69ce44e6b0f5be 1313 6caff822909e4102b57727d4fe5c7ad4;68474661d2c3d31c9984955a11c0a4c1 SAMEA3431257 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202595/ERR1202595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202595/ERR1202595_2.fastq.gz 2192198 WGS GPS_US_2010208439_R1-sc-2296429 RANDOM 38723554;41539748 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202595/ERR1202595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202595/ERR1202595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202595/17966_5#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202595/17966_5#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/005/ERR1202595/ERR1202595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/005/ERR1202595/ERR1202595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202595/17966_5#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202595/17966_5#145.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56435535;3688 ERS740542 ERX1274837 GENOMIC 15024733 274024750 2016-01-12 SC_RUN_17966_5#145 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202595/17966_5#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202595/17966_5#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#145 ERR1066275 SC_EXP_17175_7#82 468 fd0acdcf551bd51f2ab735e8dd3787db;96ca8bd8968207b7c46e1af81561c670 1313 431ae79a2a34cbd48c09319a3543874c;20aa8c344f2c43cbcdb0d9d953ae4673 SAMEA3354066 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066275/ERR1066275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066275/ERR1066275_2.fastq.gz 6414362 WGS GPS_ZA_2875-sc-2278672 RANDOM 113447112;121005066 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066275/ERR1066275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066275/ERR1066275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066275/17175_7#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066275/17175_7#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066275/ERR1066275_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066275/ERR1066275_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066275/17175_7#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066275/17175_7#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 183924452;10514 ERS708421 ERX1146425 GENOMIC 14427453 801795250 2015-10-13 SC_RUN_17175_7#82 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066275/17175_7#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066275/17175_7#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#82 ERR1202583 SC_EXP_17966_5#133 464 2fe76c85335652679f9da923f8db3af6;91c9d2b678075986bed3a5fefeb554b7 1313 09ef9340f06a3f56f06b7bc1aecea40e;1cdf3821d7d3a2394c2f7c47fa7dcaab SAMEA3430877 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202583/ERR1202583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202583/ERR1202583_2.fastq.gz 2370738 WGS GPS_US_2010200830_R1-sc-2296398 RANDOM 41555713;44088323 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202583/ERR1202583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202583/ERR1202583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202583/17966_5#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202583/17966_5#133.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202583/ERR1202583_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202583/ERR1202583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202583/17966_5#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202583/17966_5#133.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 60424020;3972 ERS740162 ERX1274825 GENOMIC 15024743 296342250 2016-01-12 SC_RUN_17966_5#133 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202583/17966_5#133.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202583/17966_5#133.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#133 ERR1066008 SC_EXP_17175_4#89 467 08f08108d527dcc5e7219d9dd990e3b4;61ce99cde004cf23d06ce810990d8916 1313 ee2ecb0dd613f0a8feb212527cbfbcc1;f432604b488d99d439106b94ee6c1f04 SAMEA3353522 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066008/ERR1066008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066008/ERR1066008_2.fastq.gz 5739588 WGS GPS_ZA_carriage_SP1514-sc-2278122 RANDOM 102498110;110400944 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066008/ERR1066008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066008/ERR1066008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066008/17175_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066008/17175_4#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066008/ERR1066008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066008/ERR1066008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066008/17175_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066008/17175_4#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165991982;9414 ERS707877 ERX1146158 GENOMIC 14436308 717448500 2015-10-13 SC_RUN_17175_4#89 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066008/17175_4#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066008/17175_4#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#89 ERR1066110 SC_EXP_17175_6#8 449 e4f255ccd850694a003e62f5586f0e25;2d47e815369addaed8359e44004cd55e 1313 bbb4fc0d5f748d54d3e62ee44439d4e6;462483be13a047674d8cd67fa831b7d3 SAMEA3353732 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066110/ERR1066110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066110/ERR1066110_2.fastq.gz 5861432 WGS GPS_ZA_carriage_SP1711-sc-2278336 RANDOM 107708268;110023567 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066110/ERR1066110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066110/ERR1066110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066110/17175_6#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066110/17175_6#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066110/ERR1066110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066110/ERR1066110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066110/17175_6#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066110/17175_6#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 168427179;9644 ERS708087 ERX1146260 GENOMIC 14427588 732679000 2015-10-13 SC_RUN_17175_6#8 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066110/17175_6#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066110/17175_6#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#8 ERR1065747 SC_EXP_17150_5#14 460 93fe0acf3d18a0d20ab61d46bde91856;0925c7015bc4d10c345d50021ed4792e 1313 7d481ee807298a09615b7bdc0852d682;8e935b60ccd4edc82735a4c2824abcf4 SAMEA3353743 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065747/ERR1065747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065747/ERR1065747_2.fastq.gz 5011272 WGS GPS_ZA_carriage_SP1810-sc-2278347 RANDOM 106240034;97643179 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065747/ERR1065747_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065747/ERR1065747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065747/17150_5#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065747/17150_5#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065747/ERR1065747_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065747/ERR1065747_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065747/17150_5#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065747/17150_5#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 156292646;8193 ERS708098 ERX1145897 GENOMIC 14423257 626409000 2015-10-13 SC_RUN_17150_5#14 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065747/17150_5#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065747/17150_5#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#14 ERR1065608 SC_EXP_17138_5#34 500 e5b0358a3b1b0e12c0f31034ac91f1d6;be04677e3f7fa4ed519bc919d7ffd4ef 1313 3a28f6c6e0b2c2eea678fabcfaf582c0;b13a78d437e0d489e9b67c51ae292e83 SAMEA3232645 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065608/ERR1065608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065608/ERR1065608_2.fastq.gz 6336648 WGS GPS_NP_3741-sc-2205564 RANDOM 135286299;133391240 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065608/ERR1065608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065608/ERR1065608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065608/17138_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065608/17138_5#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065608/ERR1065608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065608/ERR1065608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065608/17138_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065608/17138_5#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 206840941;10212 ERS653856 ERX1145758 GENOMIC 14451843 792081000 2015-10-13 SC_RUN_17138_5#34 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065608/17138_5#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065608/17138_5#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#34 ERR1065978 SC_EXP_17175_4#59 467 1a7916244d6d4d1def13716b1af553d5;a975f62267bceea48b5f97171931c91d 1313 4fa527a72473cd4872854acc21df1dd5;98006c7b0da14a63554253c45e5fad9e SAMEA3353463 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065978/ERR1065978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065978/ERR1065978_2.fastq.gz 4513148 WGS GPS_ZA_carriage_SP1484-sc-2278063 RANDOM 84088375;85738612 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065978/ERR1065978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065978/ERR1065978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065978/17175_4#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065978/17175_4#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065978/ERR1065978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065978/ERR1065978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065978/17175_4#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065978/17175_4#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 129481316;7430 ERS707818 ERX1146128 GENOMIC 14436328 564143500 2015-10-13 SC_RUN_17175_4#59 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065978/17175_4#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065978/17175_4#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#59 ERR1065730 SC_EXP_17150_4#91 458 2d8f371897e073b4bc367e4ba666a399;1916e8a51976629ebdc99a5c665a0a8a 1313 e080ccb99606ccb6c03fc7f1cb9a0edc;662d340d2a080eac6b32f5e38b72a1d8 SAMEA3353712 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065730/ERR1065730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065730/ERR1065730_2.fastq.gz 5310304 WGS GPS_ZA_carriage_SP1607-sc-2278314 RANDOM 104569631;104478697 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065730/ERR1065730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065730/ERR1065730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065730/17150_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065730/17150_4#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065730/ERR1065730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065730/ERR1065730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065730/17150_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065730/17150_4#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 160802808;8674 ERS708067 ERX1145880 GENOMIC 14436429 663788000 2015-10-13 SC_RUN_17150_4#91 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065730/17150_4#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065730/17150_4#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#91 ERR1065976 SC_EXP_17175_4#57 467 907a1bfa82e9cabb2c73370ef5601a11;fbcadebb9b51c5c299a51c8392ac14cf 1313 5885e8f798ccfc164b00c7b9c788b4cf;6e1d28dec183b0cebe791a690e69177b SAMEA3353459 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065976/ERR1065976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065976/ERR1065976_2.fastq.gz 5140824 WGS GPS_ZA_carriage_SP1482-sc-2278059 RANDOM 94828147;97843081 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065976/ERR1065976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065976/ERR1065976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065976/17175_4#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065976/17175_4#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065976/ERR1065976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065976/ERR1065976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065976/17175_4#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065976/17175_4#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 148484569;8447 ERS707814 ERX1146126 GENOMIC 14436304 642603000 2015-10-13 SC_RUN_17175_4#57 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065976/17175_4#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065976/17175_4#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#57 ERR1065538 SC_EXP_17138_4#55 472 3b894a42babbf83498ac42432737bf54;930bae969029d9524905250ed71bdda0 1313 aab251e7ca1eff03cf4a282e7a736a53;a9eb63d7b5a64c1d4b60369ffdbfad9a SAMEA3354337 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065538/ERR1065538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065538/ERR1065538_2.fastq.gz 4267178 WGS GPS_ZA_carriage_SP2024-sc-2278981 RANDOM 88200040;85809387 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065538/ERR1065538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065538/ERR1065538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065538/17138_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065538/17138_4#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065538/ERR1065538_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065538/ERR1065538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065538/17138_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065538/17138_4#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131512139;6960 ERS708692 ERX1145688 GENOMIC 14468631 533397250 2015-10-13 SC_RUN_17138_4#55 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065538/17138_4#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065538/17138_4#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#55 ERR1065366 SC_EXP_17059_8#70 447 0d17edfacfa35f0ac5ab92647b78ef4c;5b36b87047ab7ec96651f80c072b2d53 1313 2ac43336c91f6306f5248390cce45074;f1090ada89d7069ecfc46e3948cc0a71 SAMEA3353492 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065366/ERR1065366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065366/ERR1065366_2.fastq.gz 4855676 WGS GPS_ZA_carriage_SP1398-sc-2278092 RANDOM 85162976;86077037 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065366/ERR1065366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065366/ERR1065366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065366/17059_8#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065366/17059_8#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065366/ERR1065366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065366/ERR1065366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065366/17059_8#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065366/17059_8#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 139635840;8017 ERS707847 ERX1145516 GENOMIC 14406251 606959500 2015-10-13 SC_RUN_17059_8#70 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065366/17059_8#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065366/17059_8#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#70 ERR997650 SC_EXP_16399_7#29 213 5f59594b9efcca4750183e93a41b44d9;825facd492e0859b9f271be150c276db 1313 004df7a4b5f1177efb53ee3da492442b;b4e33906471a900fea8ebfde4a28f5bb SAMEA3309694 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997650/ERR997650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997650/ERR997650_2.fastq.gz 5295178 WGS GPS_GM_1712-sc-2206497 RANDOM 181188481;188270514 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997650/ERR997650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997650/ERR997650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997650/16399_7#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997650/16399_7#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997650/ERR997650_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997650/ERR997650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997650/16399_7#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997650/16399_7#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300993303;8492 ERS686156 ERX1076686 GENOMIC 13843400 529517800 2015-09-04 SC_RUN_16399_7#29 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997650/16399_7#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997650/16399_7#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#29 ERR1065355 SC_EXP_17059_8#59 447 81e1aeccd157964b79e1e6ef895d429f;41e24a54f4abbab6843ebc693cca6355 1313 2fa47798a0cc0949c70d181200ab1b38;f5f99a48e188cca10bdfca6cff761165 SAMEA3353471 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065355/ERR1065355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065355/ERR1065355_2.fastq.gz 4499752 WGS GPS_ZA_carriage_SP1387-sc-2278071 RANDOM 80348147;81317549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065355/ERR1065355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065355/ERR1065355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065355/17059_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065355/17059_8#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065355/ERR1065355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065355/ERR1065355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065355/17059_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065355/17059_8#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131380469;7412 ERS707826 ERX1145505 GENOMIC 14406214 562469000 2015-10-13 SC_RUN_17059_8#59 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065355/17059_8#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065355/17059_8#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#59 ERR984256 SC_EXP_16453_2#19 218 3a9682287dad8c1a1c45732b30165e74;0be3214541a2858a77f0c4fe84a94b05 1313 cdc8101d67096921c94f7e7033d42cd4;cd755ef57bff005d088ec082b47e476a SAMEA3309773 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984256/ERR984256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984256/ERR984256_2.fastq.gz 6202022 WGS GPS_GM_1791-sc-2206587 RANDOM 108758065;113917067 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984256/ERR984256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984256/ERR984256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984256/16453_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984256/16453_2#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984256/ERR984256_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984256/ERR984256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984256/16453_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984256/16453_2#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 189028569;10239 ERS686235 ERX1065477 GENOMIC 13843278 775252750 2015-08-18 SC_RUN_16453_2#19 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984256/16453_2#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984256/16453_2#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#19 ERR980182 SC_EXP_16288_6#61 206 a0bc59fb0507664233315297cefcebcb;10831a7a08910884e03bc0f2c188289f 1313 0534ccbfa86080edf4fd84f8e81a752c;f805073e30ef0965aa1e334ec7f60c90 SAMEA3232653 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980182/ERR980182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980182/ERR980182_2.fastq.gz 6853994 WGS GPS_NP_3784-sc-2205572 RANDOM 235619271;229543938 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980182/ERR980182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980182/ERR980182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980182/16288_6#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980182/16288_6#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980182/ERR980182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980182/ERR980182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980182/16288_6#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980182/16288_6#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 375735607;10796 ERS653864 ERX1057054 GENOMIC 13303961 685399400 2015-08-12 SC_RUN_16288_6#61 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980182/16288_6#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980182/16288_6#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_6#61 ERR979950 SC_EXP_16288_3#77 234 4e9c1f55c41d5eed468f0a35462e5bb5;629e49b694bbfa79ae6ce002fcacdc53 1313 0cff22aa6700e11adeb4094ee75b7e8a;b1c66ab67e972a546209ca2c6025eacf SAMEA3232420 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979950/ERR979950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979950/ERR979950_2.fastq.gz 3871796 WGS GPS_NP_2072-sc-2205338 RANDOM 129784461;127610749 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979950/ERR979950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979950/ERR979950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979950/16288_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979950/16288_3#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979950/ERR979950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979950/ERR979950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979950/16288_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979950/16288_3#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 208553832;6163 ERS653631 ERX1056822 GENOMIC 13296193 387179600 2015-08-12 SC_RUN_16288_3#77 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979950/16288_3#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979950/16288_3#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#77 ERR925398 SC_EXP_15995_2#188 219 9fe56e04a2f213b986df67d79a4305db;acefb9d9c4f40db520a6186135363b53 1313 0778df8799b648b59877da2a2d328128;f66d2eee1b41d46ccb6c63d1e9572469 SAMEA3209118 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925398/ERR925398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925398/ERR925398_2.fastq.gz 1972898 WGS GPS_ZA_carriage_SP1093-sc-2205256 RANDOM 61990892;64396911 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925398/ERR925398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925398/ERR925398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925398/15995_2#188.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925398/15995_2#188.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925398/ERR925398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925398/ERR925398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925398/15995_2#188.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925398/15995_2#188.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103211855;3332 ERS640220 ERX1004673 GENOMIC 13301258 197289800 2015-06-23 SC_RUN_15995_2#188 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925398/15995_2#188.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925398/15995_2#188.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#188 ERR925168 SC_EXP_15995_1#145 231 a26660089903c4cc3208e9e56d6a3dc3;e302c2a0cf164050bae290a45f7cd7c9 1313 6f7a8dfc12930b032693f0a6587a7d75;a792d68c2445108860b5cd21f82447cf SAMEA3208885 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925168/ERR925168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925168/ERR925168_2.fastq.gz 2637862 WGS GPS_ZA_carriage_SP862-sc-2205021 RANDOM 80016771;83644001 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925168/ERR925168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925168/ERR925168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925168/15995_1#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925168/15995_1#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925168/ERR925168_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925168/ERR925168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925168/15995_1#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925168/15995_1#145.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 134100113;4358 ERS639987 ERX1004443 GENOMIC 13241071 263786200 2015-06-23 SC_RUN_15995_1#145 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925168/15995_1#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925168/15995_1#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#145 ERR980017 SC_EXP_16288_4#61 217 615ddb7aed9633df2d6f3658a12266e8;457d3b48eb5074af6b58ea761d3498cd 1313 7a1a926802cddb1f23beb61692cd519f;68bc7a9fc40148dc89187cc133d3f1ba SAMEA3232487 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980017/ERR980017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980017/ERR980017_2.fastq.gz 5251356 WGS GPS_NP_4004-sc-2205405 RANDOM 187073003;182373251 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980017/ERR980017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980017/ERR980017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980017/16288_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980017/16288_4#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980017/ERR980017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980017/ERR980017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980017/16288_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980017/16288_4#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 299829218;8324 ERS653698 ERX1056889 GENOMIC 13296288 525135600 2015-08-12 SC_RUN_16288_4#61 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980017/16288_4#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980017/16288_4#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#61 ERR925284 SC_EXP_15995_2#73 219 7f2011f96d7443a63db4dae81ee14f5b;815bdc6f51236f89fc176e8b19fb2a16 1313 7706e4f17c9a3ed19f0ef36e350d3d5e;2c8d6447a08ef13ae524726c6780f4a6 SAMEA3209004 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925284/ERR925284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925284/ERR925284_2.fastq.gz 1746450 WGS GPS_ZA_carriage_SP960-sc-2205141 RANDOM 54893409;56663327 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925284/ERR925284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925284/ERR925284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925284/15995_2#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925284/15995_2#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925284/ERR925284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925284/ERR925284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925284/15995_2#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925284/15995_2#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90405438;2927 ERS640106 ERX1004559 GENOMIC 13301123 174645000 2015-06-23 SC_RUN_15995_2#73 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925284/15995_2#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925284/15995_2#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#73 ERR925251 SC_EXP_15995_2#40 219 934840683ae4dc2650cbe517d133489a;07cdd14319b1492c0988a89214a35fe6 1313 997a297f7b1677336b5415e655ff04c8;b526eddad24fa12614b10ae2ed3ed970 SAMEA3208971 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925251/ERR925251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925251/ERR925251_2.fastq.gz 1736816 WGS GPS_ZA_carriage_SP1039-sc-2205108 RANDOM 54849642;56579188 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925251/ERR925251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925251/ERR925251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925251/15995_2#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925251/15995_2#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925251/ERR925251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925251/ERR925251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925251/15995_2#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925251/15995_2#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90529396;2902 ERS640073 ERX1004526 GENOMIC 13301202 173681600 2015-06-23 SC_RUN_15995_2#40 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925251/15995_2#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925251/15995_2#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#40 ERR925062 SC_EXP_15995_1#36 231 46937ce0d67cb3b1c84b247ed7d59541;ac258299bc6c2df443971628f0e7d950 1313 3d7e7ede523656fd65b5042df01c0d05;66a64d7cd3b476cfa6273bb287908ed2 SAMEA3206761 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925062/ERR925062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925062/ERR925062_2.fastq.gz 1965270 WGS GPS_ZA_carriage_SP136-sc-2191695 RANDOM 61260949;63805026 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925062/ERR925062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925062/ERR925062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925062/15995_1#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925062/15995_1#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925062/ERR925062_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925062/ERR925062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925062/15995_1#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925062/15995_1#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 101354379;3239 ERS638771 ERX1004337 GENOMIC 13241008 196527000 2015-06-23 SC_RUN_15995_1#36 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925062/15995_1#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925062/15995_1#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#36 ERR925238 SC_EXP_15995_2#27 219 599ccde42622adba21472b471d55b712;b3635dc12f2e090bc877f2ecdd6db4a9 1313 77f8a837d5e5f29594a10fd081b927d0;0b45dfc44d94d6952cd8cc232b1d1d2c SAMEA3208958 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925238/ERR925238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925238/ERR925238_2.fastq.gz 1668166 WGS GPS_ZA_carriage_SP978-sc-2205095 RANDOM 52639742;54354125 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925238/ERR925238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925238/ERR925238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925238/15995_2#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925238/15995_2#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925238/ERR925238_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925238/ERR925238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925238/15995_2#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925238/15995_2#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86866812;2779 ERS640060 ERX1004513 GENOMIC 13301141 166816600 2015-06-23 SC_RUN_15995_2#27 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925238/15995_2#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925238/15995_2#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#27 ERR925028 SC_EXP_15995_1#2 231 2b903bbe50e729d526e2f77e382db3de;c538b4295d1739da2494c9d40324283a 1313 3e3b3a6ba9c97310d3e238663f4bf2c4;ff198184158165e66e0aec8090f56b0e SAMEA3206722 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925028/ERR925028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925028/ERR925028_2.fastq.gz 1640716 WGS GPS_ZA_carriage_SP108-sc-2191656 RANDOM 50083753;52089200 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925028/ERR925028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925028/ERR925028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925028/15995_1#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925028/15995_1#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925028/ERR925028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925028/ERR925028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925028/15995_1#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925028/15995_1#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82701684;2777 ERS638732 ERX1004303 GENOMIC 13240980 164071600 2015-06-23 SC_RUN_15995_1#2 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925028/15995_1#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925028/15995_1#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#2 ERR913530 SC_EXP_15874_1#51 217 a4e0747980704065338506361d314c5e;eac9731898eef68971a6f5b72ed5ffb9 1313 beca1502b4906067dd2d1afc51c47f0b;ae87f1dfc875621554bca70bb31d9877 SAMEA3207060 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913530/ERR913530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913530/ERR913530_2.fastq.gz 5409678 WGS GPS_ZA_carriage_SP411-sc-2191997 RANDOM 161238706;169366383 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913530/ERR913530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913530/ERR913530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913530/15874_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913530/15874_1#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913530/ERR913530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913530/ERR913530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913530/15874_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913530/15874_1#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264682580;8566 ERS639070 ERX992654 GENOMIC 13242079 540967800 2015-06-17 SC_RUN_15874_1#51 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913530/15874_1#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913530/15874_1#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#51 ERR913304 SC_EXP_15873_3#70 216 785dad303d68ab6b2165b4155feb31d7;f620cee3e14c6979d349b818a48790bc 1313 cd20690a06bccb90f572a59584c2686b;a25c149968df3257799dd4ea0e665ae5 SAMEA3233265 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913304/ERR913304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913304/ERR913304_2.fastq.gz 5404938 WGS GPS_GM_1389-sc-2206021 RANDOM 168688793;175229152 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913304/ERR913304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913304/ERR913304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913304/15873_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913304/15873_3#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913304/ERR913304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913304/ERR913304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913304/15873_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913304/15873_3#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278744646;8648 ERS654458 ERX992428 GENOMIC 13308208 540493800 2015-06-17 SC_RUN_15873_3#70 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913304/15873_3#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913304/15873_3#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#70 ERR913285 SC_EXP_15873_3#51 216 f32ad15316790b5213279896755a9aee;f24952036eaad2013abe548518e0e655 1313 3225abc7aa33429572dbeedd3032f478;e1f0d7404a82a7039c01ef6e96a2cd4f SAMEA3233242 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913285/ERR913285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913285/ERR913285_2.fastq.gz 6278650 WGS GPS_GM_1366-sc-2205998 RANDOM 196745520;205635301 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913285/ERR913285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913285/ERR913285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913285/15873_3#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913285/15873_3#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913285/ERR913285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913285/ERR913285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913285/15873_3#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913285/15873_3#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325759273;10034 ERS654435 ERX992409 GENOMIC 13308170 627865000 2015-06-17 SC_RUN_15873_3#51 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913285/15873_3#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913285/15873_3#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#51 ERR913465 SC_EXP_15873_5#69 208 bf7f669fc430e2f741aa138fbe7f50b5;bd4e13cc14200f7d87abd0910545c8ee 1313 4a6c1051cad6ee24fdbfe9d97eba8108;24f1f8a6533dabc4534c89f38b82e13c SAMEA3233378 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913465/ERR913465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913465/ERR913465_2.fastq.gz 4264956 WGS GPS_GM_1502-sc-2206136 RANDOM 134993082;142618283 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913465/ERR913465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913465/ERR913465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913465/15873_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913465/15873_5#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913465/ERR913465_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913465/ERR913465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913465/15873_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913465/15873_5#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 225995594;6857 ERS654571 ERX992589 GENOMIC 13308432 426495600 2015-06-17 SC_RUN_15873_5#69 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913465/15873_5#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913465/15873_5#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_5#69 ERR913270 SC_EXP_15873_3#36 216 65421b30cc041c372ebf12eb2f446be8;4bc9c87bc17d5da4a6d1c43ac3386e2f 1313 0360f0f685f3bbb77b282618cfad00d2;68f4706eb233f458fe38dab23a7cf931 SAMEA3233227 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913270/ERR913270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913270/ERR913270_2.fastq.gz 5268028 WGS GPS_GM_1351-sc-2205983 RANDOM 165064774;172477319 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913270/ERR913270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913270/ERR913270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913270/15873_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913270/15873_3#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913270/ERR913270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913270/ERR913270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913270/15873_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913270/15873_3#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272656796;8459 ERS654420 ERX992394 GENOMIC 13308180 526802800 2015-06-17 SC_RUN_15873_3#36 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913270/15873_3#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913270/15873_3#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#36 ERR908922 SC_EXP_15841_1#73 206 d1af64c91c5a27476a10c5e1208125c7;d792f8270d4acc8350c211e2c57cd0b1 1313 853ba62b717781210b915233e13f77e5;a8bfd70b1d9d2b3d8f717d8f398d09a7 SAMEA3206857 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908922/ERR908922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908922/ERR908922_2.fastq.gz 4918012 WGS GPS_ZA_carriage_SP200-sc-2191791 RANDOM 153901343;158779259 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908922/ERR908922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908922/ERR908922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908922/15841_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908922/15841_1#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908922/ERR908922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908922/ERR908922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908922/15841_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908922/15841_1#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251933619;7917 ERS638867 ERX988177 GENOMIC 13227446 491801200 2015-06-09 SC_RUN_15841_1#73 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908922/15841_1#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908922/15841_1#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#73 ERR908880 SC_EXP_15841_1#31 206 39a108342fc6a869dc90eb9126c491ae;03943d80bb018667e6343f9fb05d2f2d 1313 b1b6275b6ea7119da7301611e1ad9bf0;5ee2cff469b18b8c5f68aca3df1ce91b SAMEA3206797 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908880/ERR908880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908880/ERR908880_2.fastq.gz 5115888 WGS GPS_ZA_carriage_SP266-sc-2191731 RANDOM 160333268;165027421 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908880/ERR908880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908880/ERR908880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908880/15841_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908880/15841_1#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908880/ERR908880_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908880/ERR908880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908880/15841_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908880/15841_1#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262806925;8183 ERS638807 ERX988135 GENOMIC 13227512 511588800 2015-06-09 SC_RUN_15841_1#31 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908880/15841_1#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908880/15841_1#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#31 ERR884368 SC_EXP_15682_1#70 218 071a85be359f8af2b020261cecf0636c;a0302381f8e51510123adbb87dd766b9 1313 47275d5677881e77a2928c2c0652c9e6;fa0c987174f6bf6c9d6e52dc52efcebd SAMEA3176068 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884368/ERR884368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884368/ERR884368_2.fastq.gz 4014534 WGS GPS_PL_8030_10-sc-2191125 RANDOM 133614782;137715536 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884368/ERR884368_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884368/ERR884368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884368/15682_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884368/15682_1#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884368/ERR884368_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884368/ERR884368_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884368/15682_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884368/15682_1#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 220013228;6427 ERS629016 ERX963771 GENOMIC 13029572 401453400 2015-05-21 SC_RUN_15682_1#70 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884368/15682_1#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884368/15682_1#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#70 ERR884450 SC_EXP_15682_2#57 211 8457127da0c2830ab34f8e4591fef6ec;b2f7387da675b8f3aa9da78aeef6dabd 1313 b0d9d75a05a86fb0f1e4f1ad57a70572;99772ac9eab301670bd842e2787d0ec6 SAMEA3176172 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884450/ERR884450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884450/ERR884450_2.fastq.gz 6250382 WGS GPS_PL_1921_13-sc-2191231 RANDOM 204049689;210336982 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884450/ERR884450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884450/ERR884450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884450/15682_2#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884450/15682_2#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884450/ERR884450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884450/ERR884450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884450/15682_2#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884450/15682_2#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 335834944;9946 ERS629120 ERX963853 GENOMIC 13029608 625038200 2015-05-21 SC_RUN_15682_2#57 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884450/15682_2#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884450/15682_2#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_2#57 ERR884435 SC_EXP_15682_2#42 211 5f47d9a13f887745baded3491d4c777c;ebc38b618a9810636474f8abdc050a57 1313 c32a4c136d9261e87dae48b2b1265af7;726211fd13e50697e2681e71bb7414de SAMEA3176157 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884435/ERR884435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884435/ERR884435_2.fastq.gz 6270710 WGS GPS_PL_6594_12-sc-2191216 RANDOM 207761617;214238164 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884435/ERR884435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884435/ERR884435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884435/15682_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884435/15682_2#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884435/ERR884435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884435/ERR884435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884435/15682_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884435/15682_2#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 342285269;9801 ERS629105 ERX963838 GENOMIC 13029618 627071000 2015-05-21 SC_RUN_15682_2#42 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884435/15682_2#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884435/15682_2#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_2#42 ERR876482 SC_EXP_15608_2#52 215 b04c1353dc0a7298bcd77b73a471830f;6e32b2dfbcae103a411b8e1b86a0fca2 1313 081ebf468123c264ed9e7675077a7896;7fed1fc17f4f252424f860afced09b91 SAMEA3175697 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876482/ERR876482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876482/ERR876482_2.fastq.gz 4964096 WGS GPS_US_1311_99_R1-sc-2190746 RANDOM 153466286;159122121 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876482/ERR876482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876482/ERR876482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876482/15608_2#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876482/15608_2#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876482/ERR876482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876482/ERR876482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876482/15608_2#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876482/15608_2#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251416532;7895 ERS628645 ERX956045 GENOMIC 13024207 496409600 2015-05-12 SC_RUN_15608_2#52 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876482/15608_2#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876482/15608_2#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#52 ERR876518 SC_EXP_15608_2#88 215 b135f5f42ad7c7125117d6fb9cd23dcf;4124cf25b037034714e9d1ea1f110ee6 1313 6f70f5eeb5807441e55ad22cb3ca628b;7f95694e32ef20f16f4c6338e1a93921 SAMEA3175733 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876518/ERR876518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876518/ERR876518_2.fastq.gz 5119756 WGS GPS_US_5100_99_R1-sc-2190782 RANDOM 158267102;165045026 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876518/ERR876518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876518/ERR876518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876518/15608_2#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876518/15608_2#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876518/ERR876518_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876518/ERR876518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876518/15608_2#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876518/15608_2#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260723811;8116 ERS628681 ERX956081 GENOMIC 13024259 511975600 2015-05-12 SC_RUN_15608_2#88 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876518/15608_2#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876518/15608_2#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#88 ERR870217 SC_EXP_15531_6#25 212 3a02969d7b3a98c8fc3f599fce57a1be;66674dc419d1f2c0fb98d25504eb8615 1313 d838f64a4d950aec93219c7a4028673a;8a9c9551ec16cb013ee1576870c02126 SAMEA3172968 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870217/ERR870217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870217/ERR870217_2.fastq.gz 4042384 WGS GPS_GM_1112-sc-2190527 RANDOM 156524814;147527207 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870217/ERR870217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870217/ERR870217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870217/15531_6#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870217/15531_6#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870217/ERR870217_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870217/ERR870217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870217/15531_6#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870217/15531_6#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251463037;6507 ERS627211 ERX949818 GENOMIC 12870019 404238400 2015-05-06 SC_RUN_15531_6#25 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870217/15531_6#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870217/15531_6#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#25 ERR869994 SC_EXP_15531_3#87 199 9e95c82c64cead14a991e34c1e9b02bf;e0c444001534db2083f95db753541c23 1313 423ba75f98fc52ff58bb6d8d35fa7af8;9376b29342e685dda5ad8be8c1b172b0 SAMEA3171591 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869994/ERR869994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869994/ERR869994_2.fastq.gz 4005384 WGS GPS_MW_152789-sc-2139985 RANDOM 151965286;145310780 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869994/ERR869994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869994/ERR869994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869994/15531_3#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869994/15531_3#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869994/ERR869994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869994/ERR869994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869994/15531_3#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869994/15531_3#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246181062;6483 ERS625982 ERX949595 GENOMIC 12862610 400538400 2015-05-06 SC_RUN_15531_3#87 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869994/15531_3#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869994/15531_3#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_3#87 ERR870147 SC_EXP_15531_5#50 214 fb9cf9b7498b00f0351bdabe821a9db5;c3d1f349eb7d4a2e539af1871ed2b2a9 1313 354ab9950b5ab3e86af2cfb508eafbd0;de329cc2b5f0fb118188c2654b9bfd76 SAMEA3172881 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870147/ERR870147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870147/ERR870147_2.fastq.gz 4300736 WGS GPS_GM_1030-sc-2190438 RANDOM 167086537;159039670 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870147/ERR870147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870147/ERR870147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870147/15531_5#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870147/15531_5#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870147/ERR870147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870147/ERR870147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870147/15531_5#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870147/15531_5#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270945710;6993 ERS627124 ERX949748 GENOMIC 12870894 430073600 2015-05-06 SC_RUN_15531_5#50 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870147/15531_5#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870147/15531_5#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#50 ERR870264 SC_EXP_15531_6#72 212 3b6fa6547c40f0b1d15c8e7b565c70d5;8879834e932f74e3df6393dc4e874112 1313 f2827c664291b355972a9b7a12546566;77c41c9754c80761a8d5cd50fef6f8f6 SAMEA3173015 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870264/ERR870264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870264/ERR870264_2.fastq.gz 4503228 WGS GPS_GM_1159-sc-2190574 RANDOM 175501002;165822839 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870264/ERR870264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870264/ERR870264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870264/15531_6#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870264/15531_6#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870264/ERR870264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870264/ERR870264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870264/15531_6#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870264/15531_6#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283227004;7232 ERS627258 ERX949865 GENOMIC 12870108 450322800 2015-05-06 SC_RUN_15531_6#72 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870264/15531_6#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870264/15531_6#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#72 ERR862293 SC_EXP_15378_2#35 205 0d0371f7ccc82c68b30e21c1754d3002;49c7ab0107cb018797d9a18c8f5604f2 1313 884cabbfedd3ce6071be2415ebbacecc;59a8aa964032ebaf0d03f74570b3c857 SAMEA3172790 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862293/ERR862293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862293/ERR862293_2.fastq.gz 2927976 WGS GPS_GM_0923-sc-2190347 RANDOM 86317042;89889694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862293/ERR862293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862293/ERR862293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862293/15378_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862293/15378_2#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862293/ERR862293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862293/ERR862293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862293/15378_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862293/15378_2#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 139805251;4791 ERS627033 ERX941943 GENOMIC 12810462 292797600 2015-04-21 SC_RUN_15378_2#35 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862293/15378_2#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862293/15378_2#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#35 ERR862472 SC_EXP_15378_4#24 205 0527ef5622a0542c7593a05677cf1198;2a32996486f4939d6f8df07f12e7d101 1313 4383d9894076412999a390481d086979;e451bcf76ff81fa46b424f264be8ecfe SAMEA3171158 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862472/ERR862472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862472/ERR862472_2.fastq.gz 4266398 WGS GPS_MW_BIP1JU-sc-2139721 RANDOM 145606233;149972885 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862472/ERR862472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862472/ERR862472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862472/15378_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862472/15378_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862472/ERR862472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862472/ERR862472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862472/15378_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862472/15378_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240502098;6827 ERS625549 ERX942122 GENOMIC 12826951 426639800 2015-04-21 SC_RUN_15378_4#24 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862472/15378_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862472/15378_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#24 ERR870084 SC_EXP_15531_4#82 207 13240e7becfef4c31ab8b6747cf2ba17;6c1802e451951ca71b5a2ac55a4f5750 1313 c159e53a99236406f48baacfb410736e;c0b4e460240e86754724f0aa4fc0157c SAMEA3172843 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870084/ERR870084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870084/ERR870084_2.fastq.gz 4175702 WGS GPS_GM_0962-sc-2190400 RANDOM 162443129;156295428 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870084/ERR870084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870084/ERR870084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870084/15531_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870084/15531_4#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870084/ERR870084_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870084/ERR870084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870084/15531_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870084/15531_4#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264710306;6769 ERS627086 ERX949685 GENOMIC 12882803 417570200 2015-05-06 SC_RUN_15531_4#82 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870084/15531_4#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870084/15531_4#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#82 ERR742448 SC_EXP_14673_2#31 220 d18809ff32b9ea592df16078be11b023;bcfdd1fd3759e13bdcf14f44994829f8 1313 373453e29b36e8c1d4b45a774c785a9b;431ca59dd70db63f5abf335f759d82b3 SAMEA2796534 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742448/ERR742448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742448/ERR742448_2.fastq.gz 6058712 WGS GPS_US_4404_05-sc-2138514 RANDOM 192334619;199254980 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742448/ERR742448_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742448/ERR742448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742448/14673_2#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742448/14673_2#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742448/ERR742448_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742448/ERR742448_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742448/14673_2#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742448/14673_2#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318568037;9667 ERS558145 ERX686131 GENOMIC 12061850 605871200 2015-01-27 SC_RUN_14673_2#31 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742448/14673_2#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742448/14673_2#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#31 ERR774355 SC_EXP_14913_7#71 228 72993e710007560b4ad0127ea7a7c83c;309fc93c0127459ddb72942d8c1e3089 1313 ed41aee300d88edf160bd42408a62fa9;febf6f7e44a907f862fa14e9c61dcc75 SAMEA2814281 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774355/ERR774355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774355/ERR774355_2.fastq.gz 5604026 WGS GPS_ZA_2493-sc-2022815 RANDOM 186495829;195204164 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774355/ERR774355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774355/ERR774355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774355/14913_7#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774355/14913_7#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774355/ERR774355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774355/ERR774355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774355/14913_7#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774355/14913_7#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312887397;8995 ERS566649 ERX717234 GENOMIC 12358001 560402600 2015-03-03 SC_RUN_14913_7#71 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774355/14913_7#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774355/14913_7#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#71 ERR774717 SC_EXP_14936_6#62 220 f0991c81669e24014aa94bf5d337f011;ec704082338827c18cd7324e1a2bdf64 1313 f7917efc3f4f32e15bb587aea7c1b0ae;c95658230a141cc13280bfef4b98c8e1 SAMEA2783878 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774717/ERR774717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774717/ERR774717_2.fastq.gz 4363286 WGS GPS_MW_BQN1AT-sc-2022375 RANDOM 157326295;159420943 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774717/ERR774717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774717/ERR774717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774717/14936_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774717/14936_6#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774717/ERR774717_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774717/ERR774717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774717/14936_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774717/14936_6#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261025480;6993 ERS553623 ERX717596 GENOMIC 12318511 436328600 2015-03-03 SC_RUN_14936_6#62 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774717/14936_6#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774717/14936_6#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_6#62 ERR773819 SC_EXP_14913_2#5 226 ea9b70d213bd1b722e0feb6b9d1988c7;97572713a02a17431327b1da4e90a463 1313 56188e8734af9ea146c414939bbb9ad8;e7226d2d24a56102e893bde0e32e57d9 SAMEA2813979 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773819/ERR773819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773819/ERR773819_2.fastq.gz 5589120 WGS GPS_ZA_2237-sc-2022463 RANDOM 188037319;193850749 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773819/ERR773819_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773819/ERR773819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773819/14913_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773819/14913_2#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773819/ERR773819_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773819/ERR773819_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773819/14913_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773819/14913_2#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 314855902;8939 ERS566347 ERX716698 GENOMIC 12395932 558912000 2015-03-03 SC_RUN_14913_2#5 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773819/14913_2#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773819/14913_2#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#5 ERR750812 SC_EXP_14723_1#84 225 483a55f462c33ec12aa18058534b71a0;3e4fc4380855a3d97af08164a603698d 1313 f88ab3bde3e6986de3bbec784cb0e0b6;d073eb2121ed86471fb68cbda1d53cfb SAMEA2797062 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750812/ERR750812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750812/ERR750812_2.fastq.gz 5439652 WGS GPS_US_PATH3608-sc-2139089 RANDOM 204140764;207824815 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750812/ERR750812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750812/ERR750812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750812/14723_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750812/14723_1#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750812/ERR750812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750812/ERR750812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750812/14723_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750812/14723_1#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 343253486;8569 ERS558673 ERX694494 GENOMIC 12123392 543965200 2015-02-03 SC_RUN_14723_1#84 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750812/14723_1#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750812/14723_1#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#84 ERR773959 SC_EXP_14913_3#50 225 bf33906e063d2b589a72e35ce56b5ad1;3214309efac23457f3390b4c767a765c 1313 2c0834ea2868bd064f5bb5d9171de979;13de7163a14b3e37d8aa1bb4a6290157 SAMEA2813990 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773959/ERR773959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773959/ERR773959_2.fastq.gz 5294964 WGS GPS_ZA_2187-sc-2022474 RANDOM 180245394;187602050 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773959/ERR773959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773959/ERR773959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773959/14913_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773959/14913_3#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773959/ERR773959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773959/ERR773959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773959/14913_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773959/14913_3#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302425975;8455 ERS566358 ERX716838 GENOMIC 12345928 529496400 2015-03-03 SC_RUN_14913_3#50 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773959/14913_3#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773959/14913_3#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#50 ERR742542 SC_EXP_14673_3#40 214 8aa38b38fc5392b955ddb09aabc30e21;a8b017aedbe57c566719b28cd1345dab 1313 8f17c492a9548dc2b78ac649bd34a52f;18ca30dee7d14fa29c6c830f8cf41b8b SAMEA2796638 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742542/ERR742542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742542/ERR742542_2.fastq.gz 5187366 WGS GPS_US_2008237906-sc-2138619 RANDOM 166929989;172386964 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742542/ERR742542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742542/ERR742542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742542/14673_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742542/14673_3#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742542/ERR742542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742542/ERR742542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742542/14673_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742542/14673_3#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276128399;8304 ERS558249 ERX686225 GENOMIC 12061960 518736600 2015-01-27 SC_RUN_14673_3#40 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742542/14673_3#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742542/14673_3#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#40 ERR742497 SC_EXP_14673_2#87 220 226d7a4fea704cb158dd88d83a6319e3;9ad2061a2ea459c46c45d0621b084cc9 1313 19c79c159d8cb1a794bc572b26a7f60b;aea4599071f9465ae933a32e6e4ff412 SAMEA2796590 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742497/ERR742497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742497/ERR742497_2.fastq.gz 5429528 WGS GPS_US_5993_07-sc-2138570 RANDOM 170874599;177505298 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742497/ERR742497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742497/ERR742497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742497/14673_2#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742497/14673_2#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742497/ERR742497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742497/ERR742497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742497/14673_2#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742497/14673_2#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282870376;8710 ERS558201 ERX686180 GENOMIC 12061857 542952800 2015-01-27 SC_RUN_14673_2#87 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742497/14673_2#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742497/14673_2#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#87 ERR742536 SC_EXP_14673_3#34 214 25ba3b24793addc5b350dc2a9eb88fff;48fcca41005f5a997291b5e41f933a7c 1313 c39c916fab2311d3f1150679f77d0362;b28140f60a3d2b190aa32e0b7446a18e SAMEA2796632 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742536/ERR742536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742536/ERR742536_2.fastq.gz 4305446 WGS GPS_US_6548_05-sc-2138613 RANDOM 142509850;147639643 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742536/ERR742536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742536/ERR742536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742536/14673_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742536/14673_3#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742536/ERR742536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742536/ERR742536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742536/14673_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742536/14673_3#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234882492;6748 ERS558243 ERX686219 GENOMIC 12061888 430544600 2015-01-27 SC_RUN_14673_3#34 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742536/14673_3#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742536/14673_3#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#34 ERR742473 SC_EXP_14673_2#59 220 63456635d72a8d465779e61ce5dd4751;50c84efd13567f8e3dc30aff37105611 1313 39b25e070c65197bc811c426a7c326f9;0242f259f3e145c895510d1c04a7ec4f SAMEA2796562 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742473/ERR742473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742473/ERR742473_2.fastq.gz 4885904 WGS GPS_US_2010209061-sc-2138542 RANDOM 155473309;161707374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742473/ERR742473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742473/ERR742473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742473/14673_2#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742473/14673_2#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742473/ERR742473_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742473/ERR742473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742473/14673_2#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742473/14673_2#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256983959;7803 ERS558173 ERX686156 GENOMIC 12061806 488590400 2015-01-27 SC_RUN_14673_2#59 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742473/14673_2#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742473/14673_2#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#59 ERR742408 SC_EXP_14673_1#83 214 8cc53a8c405d1d953922a71fdc928e9c;4d1cd233393ed9cd95f41470a08bc796 1313 64304f9fbbdcf63972a4c6de9e187736;1655da88905acc511227dc325d870496 SAMEA2796491 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742408/ERR742408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742408/ERR742408_2.fastq.gz 5086346 WGS GPS_US_2009201003-sc-2138470 RANDOM 164111672;170668011 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742408/ERR742408_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742408/ERR742408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742408/14673_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742408/14673_1#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742408/ERR742408_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742408/ERR742408_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742408/14673_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742408/14673_1#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272091531;8170 ERS558102 ERX686091 GENOMIC 12061712 508634600 2015-01-27 SC_RUN_14673_1#83 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742408/14673_1#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742408/14673_1#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#83 ERR742400 SC_EXP_14673_1#75 214 ab76e15dc42d722fd1c7e64db30de184;ce5bf5ee910a6f83233a5ac7be351ca9 1313 54d8211046a7c19ca9665ab23b8aa57f;096230a163b6878c264bf7b3c3458ae1 SAMEA2796483 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742400/ERR742400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742400/ERR742400_2.fastq.gz 4675248 WGS GPS_US_2008232504-sc-2138462 RANDOM 152045877;158115890 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742400/ERR742400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742400/ERR742400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742400/14673_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742400/14673_1#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742400/ERR742400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742400/ERR742400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742400/14673_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742400/14673_1#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251890384;7344 ERS558094 ERX686083 GENOMIC 12061711 467524800 2015-01-27 SC_RUN_14673_1#75 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742400/14673_1#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742400/14673_1#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#75 ERR742642 SC_EXP_14673_4#46 209 92dacc95f47eeeff489a2852946c38f0;ab08c6c8d11fe1a3bd256808f1de8f51 1313 b8199f13d9180eb5ea3472a33b6befbb;45db419a61b5fafa38267eb1901ed57f SAMEA2796739 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742642/ERR742642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742642/ERR742642_2.fastq.gz 5089694 WGS GPS_US_2009217666_R1-sc-2138723 RANDOM 165294436;170666317 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742642/ERR742642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742642/ERR742642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742642/14673_4#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742642/14673_4#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742642/ERR742642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742642/ERR742642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742642/14673_4#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742642/14673_4#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274038142;8102 ERS558350 ERX686325 GENOMIC 12062034 508969400 2015-01-27 SC_RUN_14673_4#46 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742642/14673_4#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742642/14673_4#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#46 ERR730208 SC_EXP_14520_4#68 222 bd0dd7c5b16598d3f38d32be71d1c265;e3b8b7a7a0ebea5426e666f28e35e79c 1313 76e00973fdedbe50e1150b060331bb5c;288e185ed6d6b72b61d077150601b884 SAMEA2696351 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730208/ERR730208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730208/ERR730208_2.fastq.gz 5170846 WGS GPS_GM_0586-sc-2021805 RANDOM 194340171;198357746 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730208/ERR730208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730208/ERR730208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730208/14520_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730208/14520_4#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730208/ERR730208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730208/ERR730208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730208/14520_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730208/14520_4#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326158926;8493 ERS524930 ERX674154 GENOMIC 11982787 517084600 2015-01-14 SC_RUN_14520_4#68 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730208/14520_4#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730208/14520_4#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#68 ERR730192 SC_EXP_14520_4#52 222 e1ef8ea8bdc8ab6ab14cbe7867fd0b5b;f9d3ccc3ebe427ecbb74193ab568df18 1313 dc3f8763d75804621f84eb8dfbd27ad9;5d91317a1908f2f7883c36a9c2475f39 SAMEA2696334 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730192/ERR730192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730192/ERR730192_2.fastq.gz 5407982 WGS GPS_GM_0570-sc-2021789 RANDOM 201907723;205518056 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730192/ERR730192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730192/ERR730192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730192/14520_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730192/14520_4#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730192/ERR730192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730192/ERR730192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730192/14520_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730192/14520_4#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 338085192;8885 ERS524913 ERX674138 GENOMIC 11982785 540798200 2015-01-14 SC_RUN_14520_4#52 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730192/14520_4#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730192/14520_4#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#52 ERR742383 SC_EXP_14673_1#58 214 c472f4602430e7b4e557198eb002c930;d9804d9f60511aaa8353166a19ded4be 1313 cad66c87a39bb25278fa3035a20e3fef;e49cdcfa427a85bd3ad1b34c56c19f6a SAMEA2796466 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742383/ERR742383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742383/ERR742383_2.fastq.gz 4956408 WGS GPS_US_8162_07-sc-2138445 RANDOM 159375079;165249360 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742383/ERR742383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742383/ERR742383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742383/14673_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742383/14673_1#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742383/ERR742383_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742383/ERR742383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742383/14673_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742383/14673_1#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262919421;7946 ERS558077 ERX686066 GENOMIC 12061697 495640800 2015-01-27 SC_RUN_14673_1#58 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742383/14673_1#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742383/14673_1#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#58 ERR730771 SC_EXP_14566_5#11 233 fd9caebdf9b08a1cfaef3704309b1bdb;3a6ec280a585058499c63405f44ed8e6 1313 6d619eb9d7d826fc299acba40e016ddc;27f2acf922cb23bc3d11d1fc67826734 SAMEA2658617 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730771/ERR730771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730771/ERR730771_2.fastq.gz 3562814 WGS GPS_ZA_1768-sc-2021225 RANDOM 101862132;103607425 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730771/ERR730771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730771/ERR730771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730771/14566_5#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730771/14566_5#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730771/ERR730771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730771/ERR730771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730771/14566_5#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730771/14566_5#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165163809;5869 ERS508645 ERX674717 GENOMIC 11838950 356281400 2015-01-14 SC_RUN_14566_5#11 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730771/14566_5#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730771/14566_5#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#11 ERR730295 SC_EXP_14520_5#62 224 063b0e13e72c206a957702d7899c0cee;fe1497a60b7211d2f5bbd988d56e4bc0 1313 333891f88008586767e91b30492e78c7;9b0e585becd02df24793f4b8e905e2b6 SAMEA2696475 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730295/ERR730295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730295/ERR730295_2.fastq.gz 4723438 WGS GPS_GM_0675-sc-2021930 RANDOM 174895068;179522772 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730295/ERR730295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730295/ERR730295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730295/14520_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730295/14520_5#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730295/ERR730295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730295/ERR730295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730295/14520_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730295/14520_5#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293330096;7750 ERS525054 ERX674241 GENOMIC 11982907 472343800 2015-01-14 SC_RUN_14520_5#62 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730295/14520_5#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730295/14520_5#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#62 ERR730460 SC_EXP_14520_7#37 213 c33f33d2e82c9700dafcaa670a867349;0012070445878cce85d8766d732e63f7 1313 5ebf56809ebeaa8ae79ec4cb3c0d56ba;964c26c7c02edada3da4b862caccd02c SAMEA2696605 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730460/ERR730460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730460/ERR730460_2.fastq.gz 4960868 WGS GPS_GM_0840-sc-2022062 RANDOM 179953884;183179466 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730460/ERR730460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730460/ERR730460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730460/14520_7#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730460/14520_7#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730460/ERR730460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730460/ERR730460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730460/14520_7#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730460/14520_7#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297684071;8132 ERS525184 ERX674406 GENOMIC 11983436 496086800 2015-01-14 SC_RUN_14520_7#37 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730460/14520_7#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730460/14520_7#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_7#37 ERR730935 SC_EXP_14566_6#80 237 40a87fd1415432a4959b8ca844d7dd51;62fbd1527b953a262906df21f2edb7ab 1313 6d65778334e27148ce54e18c427f9526;941144660572447170a242e829803ce3 SAMEA2659057 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730935/ERR730935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730935/ERR730935_2.fastq.gz 4109450 WGS GPS_ZA_2027-sc-2021695 RANDOM 124014377;128181683 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730935/ERR730935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730935/ERR730935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730935/14566_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730935/14566_6#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730935/ERR730935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730935/ERR730935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730935/14566_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730935/14566_6#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 204450285;6705 ERS509085 ERX674881 GENOMIC 11887193 410945000 2015-01-14 SC_RUN_14566_6#80 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730935/14566_6#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730935/14566_6#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#80 ERR730717 SC_EXP_14566_4#52 236 6a9e5a4cdcd3a764044135ae60d19f78;d2535d1266b0dd880bca06036b8767ae 1313 3007949e50e1d438f0a95da99b744683;5c29c29197bef7508e06aa262e9a4134 SAMEA2658646 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730717/ERR730717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730717/ERR730717_2.fastq.gz 4957062 WGS GPS_ZA_1619-sc-2021254 RANDOM 149528978;154135207 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730717/ERR730717_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730717/ERR730717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730717/14566_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730717/14566_4#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730717/ERR730717_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730717/ERR730717_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730717/14566_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730717/14566_4#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247499929;8048 ERS508674 ERX674663 GENOMIC 11911779 495706200 2015-01-14 SC_RUN_14566_4#52 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730717/14566_4#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730717/14566_4#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#52 ERR730458 SC_EXP_14520_7#35 213 ddcfac664a027b3fa873b02d806f28cc;173a9bc355f420b1becb18df5e86de86 1313 ca10961a8ad2a0f7d4c283d94b319e38;04db12e1f7f4a8ce5302c0420fabacbf SAMEA2696603 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730458/ERR730458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730458/ERR730458_2.fastq.gz 4589718 WGS GPS_GM_0838-sc-2022060 RANDOM 166133825;168874840 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730458/ERR730458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730458/ERR730458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730458/14520_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730458/14520_7#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730458/ERR730458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730458/ERR730458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730458/14520_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730458/14520_7#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276299963;7507 ERS525182 ERX674404 GENOMIC 11983412 458971800 2015-01-14 SC_RUN_14520_7#35 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730458/14520_7#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730458/14520_7#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_7#35 ERR714135 SC_EXP_14410_4#33 220 fe17a2d23c517d0040f7c004bd132262;44214c790936a88c19f0d1647277433f 1313 70b980cac8fb49dd60ae9a917ffd625a;35452dcedbd3f7f58ac072fdca259ff7 SAMEA2627339 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714135/ERR714135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714135/ERR714135_2.fastq.gz 5309476 WGS GPS_GM_0296-sc-2003277 RANDOM 184813534;184938249 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714135/ERR714135_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714135/ERR714135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714135/14410_4#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714135/14410_4#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714135/ERR714135_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714135/ERR714135_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714135/14410_4#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714135/14410_4#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304065184;8716 ERS497238 ERX658057 GENOMIC 11858247 530947600 2015-01-08 SC_RUN_14410_4#33 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714135/14410_4#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714135/14410_4#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#33 ERR662455 SC_EXP_13710_2#67 196 7fbe0a31aed195ad0c951392f76be64f;26c2542b53de022c2ce1a406ac3e56b7 1313 b1ac2069ddd5a3bd6ccdd20c74b00c76;222d415b419d2d406a387f47019cf69a SAMEA2521857 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662455/ERR662455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662455/ERR662455_2.fastq.gz 5830444 WGS 4959_01-sc-1947153 RANDOM 196510465;204272544 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662455/ERR662455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662455/ERR662455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662455/13710_2#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662455/13710_2#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662455/ERR662455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662455/ERR662455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662455/13710_2#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662455/13710_2#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333535281;9471 ERS455397 ERX618731 GENOMIC 11100471 583044400 2014-10-28 SC_RUN_13710_2#67 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662455/13710_2#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662455/13710_2#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#67 ERR662409 SC_EXP_13710_2#21 196 3cc23ea7c87810b2f1c9a6522a19030d;5c6b4dbb4311d31404e96dd544841f56 1313 3261de85830616232a47bb65b8ac9d19;c78631c29d8f5fd7182ef9ce1db7b824 SAMEA2521661 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662409/ERR662409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662409/ERR662409_2.fastq.gz 5109890 WGS 2012221320-sc-1946954 RANDOM 171138897;179430852 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662409/ERR662409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662409/ERR662409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662409/13710_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662409/13710_2#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662409/ERR662409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662409/ERR662409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662409/13710_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662409/13710_2#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291099421;8362 ERS455201 ERX618685 GENOMIC 11100489 510989000 2014-10-28 SC_RUN_13710_2#21 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662409/13710_2#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662409/13710_2#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#21 ERR662405 SC_EXP_13710_2#17 196 5ecc925d7f5ea706ccc24c56dbb143cc;b3b7a6653fea6855638684d2c660dd2a 1313 20b49da8f407cb2b37ea57d2903a8f49;be0ab969b20f72376e0463dff4fe4d4d SAMEA2521644 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662405/ERR662405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662405/ERR662405_2.fastq.gz 5844574 WGS 2012214951-sc-1946936 RANDOM 195493901;204157686 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662405/ERR662405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662405/ERR662405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662405/13710_2#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662405/13710_2#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662405/ERR662405_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662405/ERR662405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662405/13710_2#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662405/13710_2#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 332536810;9504 ERS455184 ERX618681 GENOMIC 11100441 584457400 2014-10-28 SC_RUN_13710_2#17 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662405/13710_2#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662405/13710_2#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#17 ERR600367 SC_EXP_13415_4#57 250 e7f67bd284f5bffaae3bc700e6acbe3d;92e7d7d6fe54dcdff58b138d988cfdc7 1313 c8410be5dcb1a8571f0cc4416887c332;66cff557807ca7dec338ae6d477774d6 SAMEA2553833 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600367/ERR600367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600367/ERR600367_2.fastq.gz 4043104 WGS GPS_ZA_769-sc-1950914 RANDOM 130269232;135305701 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600367/ERR600367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600367/ERR600367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600367/13415_4#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600367/13415_4#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600367/ERR600367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600367/ERR600367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600367/13415_4#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600367/13415_4#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 216498182;6586 ERS464334 ERX557196 GENOMIC 10631185 404310400 2014-09-16 SC_RUN_13415_4#57 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600367/13415_4#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600367/13415_4#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#57 ERR600153 SC_EXP_13414_2#11 233 68bfed426f700b351ebfa8e2241f39c4;311fdcd0b8d1b2f5384f6f751aab4b35 1313 309506407befee9bb219b447ce9172e7;a57642a0517c2dcdf497a8bd08aa5ac7 SAMEA2521562 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600153/ERR600153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600153/ERR600153_2.fastq.gz 5480354 WGS 2012214435-sc-1946854 RANDOM 184749963;190525888 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600153/ERR600153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600153/ERR600153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600153/13414_2#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600153/13414_2#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600153/ERR600153_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600153/ERR600153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600153/13414_2#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600153/13414_2#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312323273;8895 ERS455102 ERX556982 GENOMIC 10600519 548035400 2014-09-16 SC_RUN_13414_2#11 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600153/13414_2#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600153/13414_2#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#11 ERR600143 SC_EXP_13414_1#90 292 44b907da70ab7ee8761e6dc561456502;188305c505a7d9c8a290959288cbf90e 1313 9722477e8bab2ae7b21914ffc7a134a3;dba8d2b6555ccd0a4c90a1f3138893ff SAMEA2521546 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600143/ERR600143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600143/ERR600143_2.fastq.gz 5292504 WGS 2013208538-sc-1946837 RANDOM 182146556;187918023 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600143/ERR600143_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600143/ERR600143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600143/13414_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600143/13414_1#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600143/ERR600143_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600143/ERR600143_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600143/13414_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600143/13414_1#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 306810876;8599 ERS455086 ERX556972 GENOMIC 10524132 529250400 2014-09-16 SC_RUN_13414_1#90 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600143/13414_1#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600143/13414_1#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#90 ERR600242 SC_EXP_13414_3#21 223 1d9a19633bcf8866e65817136f26d850;16f9e874f2303e56d23ebe283acaefa2 1313 84c058dbe691849b1e4511a1a64b6542;e66d880a7a61bb6b22b25916fc688c9b SAMEA2521667 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600242/ERR600242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600242/ERR600242_2.fastq.gz 8535136 WGS 2013206355-sc-1946960 RANDOM 299574643;307420559 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600242/ERR600242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600242/ERR600242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600242/13414_3#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600242/13414_3#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600242/ERR600242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600242/ERR600242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600242/13414_3#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600242/13414_3#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 503090561;12768 ERS455207 ERX557071 GENOMIC 10600641 853513600 2014-09-16 SC_RUN_13414_3#21 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600242/13414_3#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600242/13414_3#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#21 ERR600142 SC_EXP_13414_1#89 292 752b4a24d833f1ff0972ef0c14a74682;0b396bf934812bdc8a92d9de70ff0fd9 1313 c508e06dac970e67e389e0269abbbf7c;1242f249cf6eaa76aeb2ed80cae4aabc SAMEA2521545 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600142/ERR600142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600142/ERR600142_2.fastq.gz 6441060 WGS 2013208537-sc-1946836 RANDOM 226041381;232722681 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600142/ERR600142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600142/ERR600142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600142/13414_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600142/13414_1#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600142/ERR600142_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600142/ERR600142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600142/13414_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600142/13414_1#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 381587981;10270 ERS455085 ERX556971 GENOMIC 10524120 644106000 2014-09-16 SC_RUN_13414_1#89 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600142/13414_1#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600142/13414_1#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#89 ERR568482 SC_EXP_12837_1#52 237 836cb887e1d0cd166ff34b1ad11d2bc9;79a8dc21f695dde6ad7eb0ddc6cc76ee 1313 9ee9bc34802d77d5807f933ec9bfd5a0;182aed7b8c9c8eeeccde57e572c315a0 SAMEA2434464 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568482/ERR568482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568482/ERR568482_2.fastq.gz 6270270 WGS SA_GPS_SP359-sc-1895527 RANDOM 215651163;218084092 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568482/ERR568482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568482/ERR568482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568482/12837_1#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568482/12837_1#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568482/ERR568482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568482/ERR568482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568482/12837_1#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568482/12837_1#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 360060545;10361 ERS428641 ERX527471 GENOMIC 9966516 627027000 2014-07-23 SC_RUN_12837_1#52 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568482/12837_1#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568482/12837_1#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_1#52 ERR554871 SC_EXP_12673_6#40 221 19bd41f6438f8ffd07d18dea0669b5df;afe7e254cbd51934bcba81bec3f48106 1313 675c991bcb4036a062de5dbd5df3b826;6f4ef9b277fe8e89501e64c16014515e SAMEA2382585 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554871/ERR554871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554871/ERR554871_2.fastq.gz 4664386 WGS 2120175-sc-1869830 RANDOM 156182951;175502722 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554871/ERR554871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554871/ERR554871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554871/12673_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554871/12673_6#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554871/ERR554871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554871/ERR554871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554871/12673_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554871/12673_6#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 276058689;7582 ERS408910 ERX513940 GENOMIC 9798985 466438600 2014-07-02 SC_RUN_12673_6#40 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554871/12673_6#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554871/12673_6#40.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#40 ERR505788 SC_EXP_12291_4#76 230 b1acc5536676087fcc61588ffe74c958;51f9379f92121fbd438f0e2ec5f08745 1313 5dd8288af80d04ea7e4a45748edd6908;f07dcf692d78426fcd8e898e5e7d5334 SAMEA2336008 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505788/ERR505788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505788/ERR505788_2.fastq.gz 4610848 WGS 2010209973-sc-1810936 RANDOM 147577500;152535894 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505788/ERR505788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505788/ERR505788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505788/12291_4#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505788/12291_4#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505788/ERR505788_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505788/ERR505788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505788/12291_4#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505788/12291_4#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244672737;7534 ERS394202 ERX471145 GENOMIC 9444687 461084800 2014-05-19 SC_RUN_12291_4#76 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505788/12291_4#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505788/12291_4#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#76 ERR506064 SC_EXP_12299_1#87 227 0b5e2da4639aec1398f8e0f78de80574;b0e50e17b9d032fa539aecdc57d60d57 1313 1bc0aaedb179119dd8baa805f6443827;2c4b2d1d736cee9e6091142146fc62c2 SAMEA2336199 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506064/ERR506064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506064/ERR506064_2.fastq.gz 4281770 WGS 2010209976-sc-1811131 RANDOM 142465955;147073498 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506064/ERR506064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506064/ERR506064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506064/12299_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506064/12299_1#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506064/ERR506064_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506064/ERR506064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506064/12299_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506064/12299_1#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238157697;6948 ERS394393 ERX471421 GENOMIC 9446555 428177000 2014-05-19 SC_RUN_12299_1#87 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506064/12299_1#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506064/12299_1#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#87 ERR502549 SC_EXP_12273_1#93 250 5496bf73af0dc43fe8d39e126765c934;01a1454df2bf4e5dca054ebb79e0e574 1313 6c576efaa52dea08a9e20987e000f4e9;3ec11243edae78800fa807329cdf98b1 SAMEA2238775 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502549/ERR502549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502549/ERR502549_2.fastq.gz 3755358 WGS 2100554-sc-2013-11-05T12:02:14Z-1750138 RANDOM 106961917;111519123 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502549/ERR502549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502549/ERR502549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502549/12273_1#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502549/12273_1#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR502/ERR502549/ERR502549_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR502/ERR502549/ERR502549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502549/12273_1#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502549/12273_1#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 181629475;6081 ERS367587 ERX467906 GENOMIC 9341083 375535800 2014-05-12 SC_RUN_12273_1#93 fasp.sra.ebi.ac.uk:/vol1/run/ERR502/ERR502549/12273_1#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR502/ERR502549/12273_1#93.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA309978 ERR461662 SC_EXP_11861_4#16 224 d54ab41665e2a9ce13b8067904e6cb7e;6b7165870087a7bd9c21d9c2892cc08f 1313 f5e5a4c87a304c5ebec8b4de92df0990;147c544f8402212c5c348a41ff565358 SAMEA2238964 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461662/ERR461662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461662/ERR461662_2.fastq.gz 4033546 WGS 2120357-sc-2013-11-05T12:05:38Z-1750329 RANDOM 130581452;136084544 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461662/ERR461662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461662/ERR461662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461662/11861_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461662/11861_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461662/ERR461662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461662/ERR461662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461662/11861_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461662/11861_4#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 217692510;6469 ERS367776 ERX428003 GENOMIC 9016438 403354600 2014-03-18 SC_RUN_11861_4#16 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461662/11861_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461662/11861_4#16.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461796 SC_EXP_11861_5#59 221 86585a3238104ed9a62f5967c3194882;5c9b0a12c3463806a5e1451cddb69a24 1313 6a6dffd07e36c6966489da7c6dc3abed;5bdeb1294c0de180f1eadd0bb9c73300 SAMEA2239284 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461796/ERR461796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461796/ERR461796_2.fastq.gz 3891722 WGS 2020003-sc-2013-11-05T12:11:04Z-1750657 RANDOM 121697226;127027574 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461796/ERR461796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461796/ERR461796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461796/11861_5#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461796/11861_5#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461796/ERR461796_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461796/ERR461796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461796/11861_5#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461796/11861_5#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 202746602;6343 ERS368096 ERX428137 GENOMIC 9017846 389172200 2014-03-18 SC_RUN_11861_5#59 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461796/11861_5#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461796/11861_5#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461281 SC_EXP_11860_7#92 206 cf74ef2876db9380bda3482c991aa411;cf76f22dc0a5c104c922156ca222b560 1313 dae649e8808af1bb671d9a2760b33010;1c3abc235b964e22f7f7fa5da2fbfbf0 SAMEA2239131 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461281/ERR461281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461281/ERR461281_2.fastq.gz 5411296 WGS 2000405-sc-2013-11-05T12:08:26Z-1750502 RANDOM 174709931;183683593 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461281/ERR461281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461281/ERR461281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461281/11860_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461281/11860_7#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461281/ERR461281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461281/ERR461281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461281/11860_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461281/11860_7#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 294983131;8905 ERS367943 ERX427622 GENOMIC 9014923 541129600 2014-03-18 SC_RUN_11860_7#92 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461281/11860_7#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461281/11860_7#92.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#92 ERR434048 SC_EXP_11679_1#84 216 1afde23a6e44596a778fa8b99ac244eb;90111d355fa107704659d1baa50653b5 1313 80500ead8c803fbf39c027c2a98ab919;ff95d5514fde857ce0c05d3091dc517f SAMEA2204164 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434048/ERR434048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434048/ERR434048_2.fastq.gz 3976966 WGS PATH3361-sc-2013-10-09T11:56:31Z-1712757 RANDOM 126004703;129105559 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434048/ERR434048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434048/ERR434048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434048/11679_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434048/11679_1#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434048/ERR434048_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434048/ERR434048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434048/11679_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434048/11679_1#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 209376520;6532 ERS356675 ERX400323 GENOMIC 8801453 397696600 2014-02-18 SC_RUN_11679_1#84 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434048/11679_1#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434048/11679_1#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#84 ERR433983 SC_EXP_11679_1#19 216 09c206fc8a137b54c27e9213270435ca;30e7b04b217b6e7f244ce9c098005bf7 1313 b871eb6bdba378dfdf74e2a111476ac1;81f3c090b6439b3689a00d5db355fabe SAMEA2203823 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433983/ERR433983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433983/ERR433983_2.fastq.gz 3559986 WGS 2010223357-sc-2013-10-09T11:50:04Z-1712412 RANDOM 113424051;118332890 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433983/ERR433983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433983/ERR433983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433983/11679_1#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433983/11679_1#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433983/ERR433983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433983/ERR433983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433983/11679_1#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433983/11679_1#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188521396;5867 ERS356327 ERX400258 GENOMIC 8801433 355998600 2014-02-18 SC_RUN_11679_1#19 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433983/11679_1#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433983/11679_1#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#19 ERR425468 SC_EXP_11511_8#30 288 7567ac7e1fdfef1df1cd988bff777921;a2527a7298a78d9638379c111a62523c 1313 24faa5112025d3302b758e6c84a97a69;256e852a9f80876edc06f10e4a62b15d SAMEA2203879 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425468/ERR425468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425468/ERR425468_2.fastq.gz 3964672 WGS 2009210929-sc-2013-10-09T11:51:05Z-1712469 RANDOM 131425073;135035964 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425468/ERR425468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425468/ERR425468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425468/11511_8#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425468/11511_8#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425468/ERR425468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425468/ERR425468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425468/11511_8#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425468/11511_8#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 219286669;6474 ERS356383 ERX391743 GENOMIC 8529246 396467200 2014-02-10 SC_RUN_11511_8#30 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425468/11511_8#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425468/11511_8#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_8#30 ERR1422503 SC_EXP_19084_7#174 443 d413f6e4f1dfde868bbc9dc957827528;ec7090c7aecf88f462a91c754f46ed06 1313 0cd72e84bb5b31d88ed47b7cbddbefd8;dd32717a945ad4a78e6090988f3c29f7 SAMEA3714327 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422503/ERR1422503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422503/ERR1422503_2.fastq.gz 2557118 WGS 4c601da0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 56995422;56840097 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422503/ERR1422503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422503/ERR1422503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422503/19084_7#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422503/19084_7#174.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422503/ERR1422503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422503/ERR1422503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422503/19084_7#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422503/19084_7#174.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82522262;4262 ERS1021476 ERX1493085 GENOMIC 15738091 319639750 2016-05-24 SC_RUN_19084_7#174 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422503/19084_7#174.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422503/19084_7#174.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#174 ERR997679 SC_EXP_16399_7#58 213 63e9c5ed56d7e56a6d913b4e85c44640;c1e210689c07224319d290dc9cf5735b 1313 336c8ebb4d9d176f12b7e99e83fc9b83;fd52ae291d02c935938ce365d42766ed SAMEA3309730 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997679/ERR997679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997679/ERR997679_2.fastq.gz 5588292 WGS GPS_GM_1748-sc-2206544 RANDOM 188730250;195769748 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997679/ERR997679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997679/ERR997679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997679/16399_7#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997679/16399_7#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997679/ERR997679_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997679/ERR997679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997679/16399_7#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997679/16399_7#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313479614;9066 ERS686192 ERX1076715 GENOMIC 13843368 558829200 2015-09-04 SC_RUN_16399_7#58 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997679/16399_7#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997679/16399_7#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#58 ERR997621 SC_EXP_16399_6#80 220 f1b4de81b47c51e19786b8de23183659;0262261913a9943d1f948a78ce6e8788 1313 7eea57f1f5ea221c52b5d034e448e37e;81be32c979a97959831c00ae9d14cb85 SAMEA3309663 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997621/ERR997621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997621/ERR997621_2.fastq.gz 5498598 WGS GPS_GM_1682-sc-2206466 RANDOM 183219722;190239019 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997621/ERR997621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997621/ERR997621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997621/16399_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997621/16399_6#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997621/ERR997621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997621/ERR997621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997621/16399_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997621/16399_6#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 303958884;8945 ERS686125 ERX1076657 GENOMIC 13835458 549859800 2015-09-04 SC_RUN_16399_6#80 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997621/16399_6#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997621/16399_6#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#80 ERR984265 SC_EXP_16453_2#28 218 ef63d51282e41cf1b16e1403c5ececc7;7e8fed8b6ae4b18e82efcdb4dda20c43 1313 7fe1da58db9aeb900c57326271dd3bf7;e2233022d0cbcd0a425a0e173ea6117c SAMEA3309782 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984265/ERR984265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984265/ERR984265_2.fastq.gz 5674616 WGS GPS_GM_1800-sc-2206596 RANDOM 95284113;100701812 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984265/ERR984265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984265/ERR984265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984265/16453_2#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984265/16453_2#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984265/ERR984265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984265/ERR984265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984265/16453_2#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984265/16453_2#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 166665964;9489 ERS686244 ERX1065486 GENOMIC 13843291 709327000 2015-08-18 SC_RUN_16453_2#28 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984265/16453_2#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984265/16453_2#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#28 ERR980273 SC_EXP_16288_7#83 201 a1f9221786048e10c872fc89030498f9;7fc92239e6183e455b46872bbc7fce34 1313 d19b821ec7386fa4bcd8ce68066c8097;c89b91cead31546de56c7d0f9dc7c6ea SAMEA3232766 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980273/ERR980273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980273/ERR980273_2.fastq.gz 5718738 WGS GPS_NP_1253-sc-2205678 RANDOM 189764088;185064442 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980273/ERR980273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980273/ERR980273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980273/16288_7#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980273/16288_7#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980273/ERR980273_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980273/ERR980273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980273/16288_7#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980273/16288_7#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304945415;9262 ERS653977 ERX1057145 GENOMIC 13304037 571873800 2015-08-12 SC_RUN_16288_7#83 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980273/16288_7#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980273/16288_7#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#83 ERR980010 SC_EXP_16288_4#54 217 8bb773c98e6b742afb66d523ac66478c;2c2514b77ffb4a998268c1c042b81e77 1313 7af3752bd0961e43fb31f0835e23ae8c;ec9d55d07dda2c7f9be896f3353ee062 SAMEA3232480 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980010/ERR980010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980010/ERR980010_2.fastq.gz 4754648 WGS GPS_NP_2571-sc-2205398 RANDOM 166365355;161742543 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980010/ERR980010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980010/ERR980010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980010/16288_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980010/16288_4#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980010/ERR980010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980010/ERR980010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980010/16288_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980010/16288_4#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266096513;7717 ERS653691 ERX1056882 GENOMIC 13296299 475464800 2015-08-12 SC_RUN_16288_4#54 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980010/16288_4#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980010/16288_4#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#54 ERR913241 SC_EXP_15873_3#7 216 88ed500d963fad9d457189f96c9820b7;d1ff7a77b549236f20360513a4ccb256 1313 3da98453073ab20e7b5063e93f69fd22;533c78dfc93a6ff42681570b05269da1 SAMEA3233192 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913241/ERR913241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913241/ERR913241_2.fastq.gz 6583650 WGS GPS_GM_1335-sc-2205948 RANDOM 203132280;212438021 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913241/ERR913241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913241/ERR913241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913241/15873_3#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913241/15873_3#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913241/ERR913241_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913241/ERR913241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913241/15873_3#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913241/15873_3#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 339282690;10700 ERS654385 ERX992365 GENOMIC 13308212 658365000 2015-06-17 SC_RUN_15873_3#7 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913241/15873_3#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913241/15873_3#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#7 ERR913234 SC_EXP_15873_2#82 205 666269f6e178ef840f2f40718966cd66;f27e9dcdfdc7ed052cef1d09962b94aa 1313 2dbb29981f196cad614e19c4114339e7;fb2c2399ad545ce7f5c0f51442131802 SAMEA3233180 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913234/ERR913234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913234/ERR913234_2.fastq.gz 5697324 WGS GPS_GM_1323-sc-2205936 RANDOM 184507370;195833528 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913234/ERR913234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913234/ERR913234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913234/15873_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913234/15873_2#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913234/ERR913234_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913234/ERR913234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913234/15873_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913234/15873_2#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312153537;9287 ERS654373 ERX992358 GENOMIC 13301870 569732400 2015-06-17 SC_RUN_15873_2#82 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913234/15873_2#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913234/15873_2#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#82 ERR979928 SC_EXP_16288_3#55 234 614d3540e83ecdcda2208407f74402b5;cb153db3a2ff4722a1b1690bde531e0c 1313 dc082d34768602fe0cac171af6eb707d;42d974bc652b80453c7b46e07238d91f SAMEA3232398 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979928/ERR979928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979928/ERR979928_2.fastq.gz 3942868 WGS GPS_NP_2504-sc-2205316 RANDOM 129245689;126525654 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979928/ERR979928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979928/ERR979928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979928/16288_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979928/16288_3#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979928/ERR979928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979928/ERR979928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979928/16288_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979928/16288_3#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 206127512;6440 ERS653609 ERX1056800 GENOMIC 13296214 394286800 2015-08-12 SC_RUN_16288_3#55 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979928/16288_3#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979928/16288_3#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#55 ERR913423 SC_EXP_15873_5#27 208 f34b2e0de961a77ef1517430f9ecd0a2;6e53b5e807aaad3ccb765295c7fbd659 1313 5b8dc5843eae6235b6280864c6b948d4;799d46131b842ff119f683fcb58a6a22 SAMEA3233222 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913423/ERR913423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913423/ERR913423_2.fastq.gz 5698506 WGS GPS_GM_1346-sc-2205978 RANDOM 175731940;183496604 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913423/ERR913423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913423/ERR913423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913423/15873_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913423/15873_5#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913423/ERR913423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913423/ERR913423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913423/15873_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913423/15873_5#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291332419;9285 ERS654415 ERX992547 GENOMIC 13308403 569850600 2015-06-17 SC_RUN_15873_5#27 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913423/15873_5#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913423/15873_5#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_5#27 ERR913415 SC_EXP_15873_5#19 208 5f591c18c3d252bdee490cf2fde9e5c1;c2daf24acab8c8a2464a251d31527dc0 1313 d23d54ef8d8ad3864753ef1290a4dd3b;f4431a90fcfb16db9b2273b118aef36d SAMEA3233184 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913415/ERR913415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913415/ERR913415_2.fastq.gz 5642668 WGS GPS_GM_1327-sc-2205940 RANDOM 180965800;189596928 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913415/ERR913415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913415/ERR913415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913415/15873_5#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913415/15873_5#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913415/ERR913415_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913415/ERR913415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913415/15873_5#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913415/15873_5#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300181072;8879 ERS654377 ERX992539 GENOMIC 13308402 564266800 2015-06-17 SC_RUN_15873_5#19 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913415/15873_5#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913415/15873_5#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_5#19 ERR913278 SC_EXP_15873_3#44 216 d4a531f899e7fc35da1e16e3c0550562;b3e5299a53ddd01c71a864a61b559beb 1313 b9920795bc38f3415cd86b7cfd975827;67360f36015cb55d807140216e955660 SAMEA3233235 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913278/ERR913278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913278/ERR913278_2.fastq.gz 5235362 WGS GPS_GM_1359-sc-2205991 RANDOM 162612295;169242475 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913278/ERR913278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913278/ERR913278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913278/15873_3#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913278/15873_3#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913278/ERR913278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913278/ERR913278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913278/15873_3#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913278/15873_3#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267775674;8446 ERS654428 ERX992402 GENOMIC 13308181 523536200 2015-06-17 SC_RUN_15873_3#44 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913278/15873_3#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913278/15873_3#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#44 ERR913207 SC_EXP_15873_2#55 205 0a86ca43802faebe386a29c277225e10;5a674c8de9e95af89352c3d1573ae60b 1313 0893acc4cab255d8d6731ad82a499b25;3db0698029ba04a9f0c3b9e2652e8732 SAMEA3233148 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913207/ERR913207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913207/ERR913207_2.fastq.gz 6306162 WGS GPS_GM_1292-sc-2205904 RANDOM 203461110;212084284 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913207/ERR913207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913207/ERR913207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913207/15873_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913207/15873_2#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913207/ERR913207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913207/ERR913207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913207/15873_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913207/15873_2#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 338871545;10276 ERS654341 ERX992331 GENOMIC 13301926 630616200 2015-06-17 SC_RUN_15873_2#55 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913207/15873_2#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913207/15873_2#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#55 ERR913277 SC_EXP_15873_3#43 216 a4887a8bef66b3bd012f5368013aaa82;6d30ef8d142adb71c98b584c6b701455 1313 f4a3630edcce17b004b764c36d2b73a4;f6415f59836a15409ac03df18296de57 SAMEA3233234 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913277/ERR913277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913277/ERR913277_2.fastq.gz 5697668 WGS GPS_GM_1358-sc-2205990 RANDOM 175910031;184348030 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913277/ERR913277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913277/ERR913277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913277/15873_3#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913277/15873_3#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913277/ERR913277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913277/ERR913277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913277/15873_3#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913277/15873_3#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291248692;9192 ERS654427 ERX992401 GENOMIC 13308169 569766800 2015-06-17 SC_RUN_15873_3#43 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913277/15873_3#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913277/15873_3#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#43 ERR913164 SC_EXP_15873_2#12 205 8e4d7acc4d2f334ef6923f7aca3a2a55;1c0f94a752ab9d8946ce8d9f75ed06bc 1313 ba801a0f6e8037f9ac3a526ef4475d3f;914b3a156854351f2be40d342db75de5 SAMEA3233098 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913164/ERR913164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913164/ERR913164_2.fastq.gz 5935604 WGS GPS_GM_1242-sc-2205854 RANDOM 190858016;199086872 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913164/ERR913164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913164/ERR913164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913164/15873_2#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913164/15873_2#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913164/ERR913164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913164/ERR913164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913164/15873_2#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913164/15873_2#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318951773;9630 ERS654291 ERX992288 GENOMIC 13301885 593560400 2015-06-17 SC_RUN_15873_2#12 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913164/15873_2#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913164/15873_2#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#12 ERR774566 SC_EXP_14936_4#93 220 674bc47a3c0b4589eb4808d5b0262b05;69e35369097abfcc3ccf48739acfbcf6 1313 a2609b64e84fca9fe1894aa01a133a35;792b8405951f63731ead8e430ce2205f SAMEA2814398 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774566/ERR774566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774566/ERR774566_2.fastq.gz 4658858 WGS GPS_ZA_2610-sc-2138192 RANDOM 170560053;171766018 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774566/ERR774566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774566/ERR774566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774566/14936_4#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774566/14936_4#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774566/ERR774566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774566/ERR774566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774566/14936_4#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774566/14936_4#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285802647;7556 ERS566766 ERX717445 GENOMIC 12347977 465885800 2015-03-03 SC_RUN_14936_4#93 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774566/14936_4#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774566/14936_4#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#93 ERR730163 SC_EXP_14520_4#23 222 be3f080f61fe773e265cc5fd0c03e7c1;04c7ee9629e9f860b9c39789aa5c32ae 1313 3356fbcd792ef2bda8010deb55e374c2;ff67456fb48c34a5a19e5731ae011833 SAMEA2696304 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730163/ERR730163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730163/ERR730163_2.fastq.gz 5799944 WGS GPS_GM_0541-sc-2021760 RANDOM 214082362;218088763 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730163/ERR730163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730163/ERR730163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730163/14520_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730163/14520_4#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730163/ERR730163_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730163/ERR730163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730163/14520_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730163/14520_4#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 357870089;9610 ERS524883 ERX674109 GENOMIC 11982817 579994400 2015-01-14 SC_RUN_14520_4#23 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730163/14520_4#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730163/14520_4#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#23 ERR730182 SC_EXP_14520_4#42 222 11ebf8e0ae0b126f81e079b2b9911481;303a35bcf0493405b0635c4c1a05bb53 1313 23f0be2dbf4d96f8698dc90c50845317;5d508563858e152ae2c7b14d8127e014 SAMEA2696324 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730182/ERR730182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730182/ERR730182_2.fastq.gz 5597516 WGS GPS_GM_0560-sc-2021779 RANDOM 210584764;214334348 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730182/ERR730182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730182/ERR730182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730182/14520_4#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730182/14520_4#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730182/ERR730182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730182/ERR730182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730182/14520_4#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730182/14520_4#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 350331626;9164 ERS524903 ERX674128 GENOMIC 11982760 559751600 2015-01-14 SC_RUN_14520_4#42 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730182/14520_4#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730182/14520_4#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#42 ERR730157 SC_EXP_14520_4#17 222 2916ac8d1e83f98fa2dbf76ebc713d93;116ef87b01d21145db3856dd9ba79b90 1313 30f19557e2c0b9be1cc55b642b9d99f3;a40a69a8f4bd3813c3096f09e952fbd0 SAMEA2696298 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730157/ERR730157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730157/ERR730157_2.fastq.gz 7886402 WGS GPS_GM_0535-sc-2021754 RANDOM 290256090;295279516 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730157/ERR730157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730157/ERR730157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730157/14520_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730157/14520_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730157/ERR730157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730157/ERR730157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730157/14520_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730157/14520_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 485848039;12978 ERS524877 ERX674103 GENOMIC 11982745 788640200 2015-01-14 SC_RUN_14520_4#17 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730157/14520_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730157/14520_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#17 ERR563970 SC_EXP_12754_4#27 232 3c15f2ccf4aa1f8bbb7dc6cd3b690aae;1f5b6b08242b56ba9538189ace2007be 1313 d34c29cc5d6913a4ddf8f541083cd028;51a48a7f4fee3c62bd868b1af1c9953d SAMEA2383237 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563970/ERR563970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563970/ERR563970_2.fastq.gz 5609984 WGS 2120175_II-sc-1870489 RANDOM 199929802;200962023 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563970/ERR563970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563970/ERR563970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563970/12754_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563970/12754_4#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563970/ERR563970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563970/ERR563970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563970/12754_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563970/12754_4#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 332261433;8961 ERS409562 ERX522995 GENOMIC 9922231 560998400 2014-07-16 SC_RUN_12754_4#27 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563970/12754_4#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563970/12754_4#27.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#27 ERR563755 SC_EXP_12754_2#1 209 f8f8c0631b72f65d9dc0fe1df50ae1e8;98c89642a9b6578383141edd918b9578 1313 af5d0ce57efa78271e91b56059d18ad5;10cda7633591fc5a4c72fb8be80b30d8 SAMEA2383021 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563755/ERR563755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563755/ERR563755_2.fastq.gz 4776640 WGS 2090243_II-sc-1870271 RANDOM 163558839;167877975 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563755/ERR563755_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563755/ERR563755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563755/12754_2#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563755/12754_2#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563755/ERR563755_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563755/ERR563755_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563755/12754_2#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563755/12754_2#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 274116600;7756 ERS409346 ERX522780 GENOMIC 9918567 477664000 2014-07-16 SC_RUN_12754_2#1 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563755/12754_2#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563755/12754_2#1.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#1 ERR563687 SC_EXP_12754_1#28 223 18d9ef9995da11dd691c61268a779a0d;677c026655b2f190c5e8584e6e5e5194 1313 8f73e4d2c5ff896cbd0ee113921e2bb2;4fef937ffef341ae7320d5b2e4114a31 SAMEA2382953 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563687/ERR563687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563687/ERR563687_2.fastq.gz 5210158 WGS 2080304_II-sc-1870202 RANDOM 175577796;181588761 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563687/ERR563687_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563687/ERR563687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563687/12754_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563687/12754_1#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563687/ERR563687_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563687/ERR563687_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563687/12754_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563687/12754_1#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 293419196;8408 ERS409278 ERX522712 GENOMIC 9918509 521015800 2014-07-16 SC_RUN_12754_1#28 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563687/12754_1#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563687/12754_1#28.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#28 ERR559371 SC_EXP_12718_5#10 231 1ea6a14016944dfa83fc376be7bae7c1;ee359e82a5a0fe2269ecbac963b324b3 1313 cc69fcf43f07c53ae2707bed12110340;ebf90981c3ed7674d7e4791c82b3d406 SAMEA2382840 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559371/ERR559371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559371/ERR559371_2.fastq.gz 4351782 WGS 2061564_II-sc-1870088 RANDOM 137345974;143173560 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559371/ERR559371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559371/ERR559371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559371/12718_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559371/12718_5#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559371/ERR559371_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559371/ERR559371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559371/12718_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559371/12718_5#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 230005167;7100 ERS409165 ERX518407 GENOMIC 9918378 435178200 2014-07-10 SC_RUN_12718_5#10 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559371/12718_5#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559371/12718_5#10.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#10 ERR714317 SC_EXP_14410_6#45 230 5c62705be7a851c571e7b0ce08ea9c6b;6c0710b1f925094dca27902635951905 1313 bae12d4a024b739955da202e7f905c7f;75fc33b98da4feeba1937529f8d34b4f SAMEA2627376 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714317/ERR714317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714317/ERR714317_2.fastq.gz 6126910 WGS GPS_GM_0393-sc-2003314 RANDOM 216153541;217521408 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714317/ERR714317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714317/ERR714317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714317/14410_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714317/14410_6#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714317/ERR714317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714317/ERR714317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714317/14410_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714317/14410_6#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 358102647;10007 ERS497275 ERX658239 GENOMIC 11883307 612691000 2015-01-08 SC_RUN_14410_6#45 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714317/14410_6#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714317/14410_6#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#45 ERR051642 SC_EXP_6731_5#16 232 f7e25181c1195ba0e381509c387c8ce0 1313 a0eea9fc1ad0d8632f8008bc457d2df3;6e7200a98aa3b83af3daec15f9636ea9 SAMEA1024910 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051642/ERR051642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051642/ERR051642_2.fastq.gz 5345591 WGS SMRU1096-sc-2011-01-27-1061309 RANDOM 331148602;348500134 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051642/ERR051642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051642/ERR051642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051642/6731_5#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051642/ERR051642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051642/ERR051642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051642/6731_5#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 861018690 ERS020606 ERX028690 GENOMIC 3246346 801838650 2011-11-02 SC_RUN_6731_5#16 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051642/6731_5#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR064089 SC_EXP_6938_6#23 230 e371a81c5285abed26711b2ffead2e69 1313 242794c1aa50ed1d00d53ed8bfc37d6c;39fcc1dc87dcff895ad3a2112c3f3141 SAMEA1029116 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064089/ERR064089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064089/ERR064089_2.fastq.gz 4703529 WGS SMRU2687-sc-2011-01-27-1062900 RANDOM 330624041;341259454 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064089/ERR064089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064089/ERR064089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064089/6938_6#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064089/ERR064089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064089/ERR064089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064089/6938_6#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 847701656 ERS022197 ERX042062 GENOMIC 3651707 705529350 2012-03-19 SC_RUN_6938_6#23 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064089/6938_6#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064233 SC_EXP_6949_4#23 261 be22cbedb71d3c874fd97459ed8598d7 1313 090daa3a0ad91f273f79c6b72e4e05d9;db0824376838709cbd82dcfbd28d261c SAMEA1028859 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064233/ERR064233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064233/ERR064233_2.fastq.gz 4503589 WGS SMRU2495-sc-2011-01-27-1062708 RANDOM 231414446;234936894 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064233/ERR064233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064233/ERR064233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064233/6949_4#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064233/ERR064233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064233/ERR064233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064233/6949_4#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 591340630 ERS022005 ERX042206 GENOMIC 3660784 675538350 2012-03-19 SC_RUN_6949_4#23 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064233/6949_4#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR505474 SC_EXP_12291_1#13 213 b223517685d24a2935a0000002fbc5e8;c8903064cd96125303bae6a899bde241 1313 73c7421593858447bb0b84e27a842937;d2422f8308ea10b68d0c30813f9b0b52 SAMEA2335672 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505474/ERR505474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505474/ERR505474_2.fastq.gz 4976318 WGS PATH5953-sc-1810597 RANDOM 158872384;163800699 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505474/ERR505474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505474/ERR505474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505474/12291_1#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505474/12291_1#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505474/ERR505474_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505474/ERR505474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505474/12291_1#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505474/12291_1#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264050072;7955 ERS393866 ERX470831 GENOMIC 9441145 497631800 2014-05-19 SC_RUN_12291_1#13 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505474/12291_1#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505474/12291_1#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#13 ERR554985 SC_EXP_12673_7#59 217 b7aacb4120613d511c095183bc30827e;6380d0321c00d64a2a11ae4e309f9e6c 1313 8e9b94f9e193f306bea98daa2ce70574;6ea023f888ed3ac83eeeff32f754cc9a SAMEA2382699 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554985/ERR554985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554985/ERR554985_2.fastq.gz 4561348 WGS 2000405_II-sc-1869945 RANDOM 155152605;172852080 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554985/ERR554985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554985/ERR554985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554985/12673_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554985/12673_7#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554985/ERR554985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554985/ERR554985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554985/12673_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554985/12673_7#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 272537716;7474 ERS409024 ERX514054 GENOMIC 9799025 456134800 2014-07-02 SC_RUN_12673_7#59 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554985/12673_7#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554985/12673_7#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#59 ERR084247 SC_EXP_7038_7#21 246 09b3e8078e98eee146d819a2d9294984 1313 ba4fca2513664e44a4871fcb09127da7;804522a34cc080da63752de7b1d28ec8 SAMEA1029419 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084247/ERR084247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084247/ERR084247_2.fastq.gz 3666459 WGS SMRU3021-sc-2011-01-27-1063234 RANDOM 236479856;244831955 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084247/ERR084247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084247/ERR084247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084247/7038_7#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084247/ERR084247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084247/ERR084247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084247/7038_7#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 926101273 ERS022531 ERX062013 GENOMIC 3811774 549968850 2012-02-07 SC_RUN_7038_7#21 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084247/7038_7#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR067806 SC_EXP_6972_3#15 229 3308523e0d76a353b9707dfda41f5ef1 1313 ba665e6ae6fdb300c5a17289d05c97d5;a25adc873d84e9bfed7f0a76b8e30c94 SAMEA1028654 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067806/ERR067806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067806/ERR067806_2.fastq.gz 4239461 WGS SMRU2583-sc-2011-01-27-1062796 RANDOM 269509220;274722803 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067806/ERR067806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067806/ERR067806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067806/6972_3#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067806/ERR067806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067806/ERR067806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067806/6972_3#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 697294789 ERS022093 ERX045669 GENOMIC 3686256 635919150 2012-01-16 SC_RUN_6972_3#15 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067806/6972_3#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR066325 SC_EXP_6983_7#54 239 7e5f70beb761c3e65fc5101501f11aa2 1313 576504e9ee959dd78c4a6a1995727c7f;362f37cbc2319c37ef28a5a071045b3e SAMEA1029064 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066325/ERR066325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066325/ERR066325_2.fastq.gz 8633529 WGS SMRU2358-sc-2011-01-27-1062571 RANDOM 614564358;635767380 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066325/ERR066325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066325/ERR066325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066325/6983_7#54.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066325/ERR066325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066325/ERR066325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066325/6983_7#54.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1545902543 ERS021867 ERX044188 GENOMIC 3596136 1295029350 2012-03-19 SC_RUN_6983_7#54 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066325/6983_7#54.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR059998 SC_EXP_6840_1#18 232 0c862a7e31cb4be2b75c38bc2e5b3c5d 1313 751a4b49775289118290d0da8c092937;38a4911855551f327e13465cab43c71c SAMEA1025913 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059998/ERR059998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059998/ERR059998_2.fastq.gz 5112674 WGS SMRU1770-sc-2011-01-27-1061983 RANDOM 327223658;326394564 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059998/ERR059998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059998/ERR059998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059998/6840_1#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059998/ERR059998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059998/ERR059998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059998/6840_1#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 826625596 ERS021280 ERX037836 GENOMIC 3481287 766901100 2012-03-22 SC_RUN_6840_1#18 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR059/ERR059998/6840_1#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR039573 SC_EXP_6259_5#14 197 fcd9d838e56089bf0f98d8d1560de738 1313 e45a27d8950f6f2eb28a39e1f0c7df71;0005de70cf9e8ae554b12c4ee8415b6a SAMEA974677 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039573/ERR039573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039573/ERR039573_2.fastq.gz 3563177 WGS SMRU14-sc-2011-01-27-1026439 RANDOM 196551293;204266336 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039573/ERR039573_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039573/ERR039573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039573/6259_5#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039573/ERR039573_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039573/ERR039573_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039573/6259_5#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 513474665 ERS019172 ERX016746 GENOMIC 2590858 534476550 2011-07-27 SC_RUN_6259_5#14 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039573/6259_5#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2089771 SC_EXP_22027_1#151 449 dac60059fb967b912be6d00421c08e1a;eb3ccd12d0305de54b8f6fe56c6e8fd6 1313 08b64ee05ab4cd8a248ed6bb1274ad01;ca7f8fb5245960e3d6e284145366547e SAMEA104155126 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089771/ERR2089771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089771/ERR2089771_2.fastq.gz 2825898 WGS 9a599f50-c37a-11e6-b158-3c4a9275d6c8 RANDOM 52318434;56980382 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089771/ERR2089771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089771/ERR2089771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089771/22027_1#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089771/22027_1#151.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089771/ERR2089771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089771/ERR2089771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089771/22027_1#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089771/22027_1#151.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77272074;4650 ERS1814144 ERX2146565 GENOMIC DN477278F:G8 353237250 2017-08-08 SC_RUN_22027_1#151 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089771/22027_1#151.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089771/22027_1#151.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#151 ERR2089848 SC_EXP_22114_6#60 444 c4b28115ff1294c62ad17e06fdbe7aa5;e63111f525a6930fa240f0f927de5240 1313 bbf854bb34dcab8a401ca67e823a3c6d;2b5776f340eb73697a785fed01f3da13 SAMEA104155035 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089848/ERR2089848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089848/ERR2089848_2.fastq.gz 2044564 WGS 8f7b7cc0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 46464040;43699173 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089848/ERR2089848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089848/ERR2089848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089848/22114_6#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089848/22114_6#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089848/ERR2089848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089848/ERR2089848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089848/22114_6#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089848/22114_6#60.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62615516;3456 ERS1814053 ERX2146642 GENOMIC DN478829S:D8 255570500 2017-08-08 SC_RUN_22114_6#60 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089848/22114_6#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089848/22114_6#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#60 ERR1788564 SC_EXP_21127_2#179 459 fbe736555308ae6e12e0a9f427596f44;ff9b25bb6894fdfda9ccb6a06ba9307f 1313 1721dadef289c23452d72d34f7ab17b5;9449cd94fffe4654f0ee584d75a8e611 SAMEA4388116 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788564/ERR1788564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788564/ERR1788564_2.fastq.gz 2767702 WGS 4a8eb110-5a14-11e6-af69-3c4a9275d6c8 RANDOM 56589901;61188186 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788564/ERR1788564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788564/ERR1788564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788564/21127_2#179.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788564/21127_2#179.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/004/ERR1788564/ERR1788564_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/004/ERR1788564/ERR1788564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788564/21127_2#179.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788564/21127_2#179.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83052161;4632 ERS1299565 ERX1852287 GENOMIC DN465287Q:E11 345962750 2017-01-11 SC_RUN_21127_2#179 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788564/21127_2#179.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788564/21127_2#179.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#179 ERR2089732 SC_EXP_22027_1#112 465 d7cd93d9d906a457b79a428835b481dd;c7cdcea6c3ca15c33172003cfc1eb220 1313 f587341651cc5393468f95376cd26ad6;a4772e322cb9f147aeeca3d18b7fd7a2 SAMEA104155087 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089732/ERR2089732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089732/ERR2089732_2.fastq.gz 2878396 WGS 91cb3920-c37a-11e6-b158-3c4a9275d6c8 RANDOM 55666168;59830340 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089732/ERR2089732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089732/ERR2089732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089732/22027_1#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089732/22027_1#112.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089732/ERR2089732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089732/ERR2089732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089732/22027_1#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089732/22027_1#112.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81728982;4689 ERS1814105 ERX2146526 GENOMIC DN477278F:H3 359799500 2017-08-08 SC_RUN_22027_1#112 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089732/22027_1#112.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089732/22027_1#112.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#112 ERR2089726 SC_EXP_22027_1#106 456 c3846b37296f2254f8982da83e8194ca;c8fbbdc6201b5e9fccbef7ca169299ea 1313 c2d99808dd2e6b5aa613f0ec6e729e56;8c53200e4e7d787c9a682c8e1ab4f59a SAMEA104155079 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089726/ERR2089726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089726/ERR2089726_2.fastq.gz 2565598 WGS 91850860-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48119815;51932546 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089726/ERR2089726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089726/ERR2089726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089726/22027_1#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089726/22027_1#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089726/ERR2089726_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089726/ERR2089726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089726/22027_1#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089726/22027_1#106.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70667457;4259 ERS1814097 ERX2146520 GENOMIC DN477278F:B3 320699750 2017-08-08 SC_RUN_22027_1#106 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089726/22027_1#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089726/22027_1#106.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#106 ERR1191857 SC_EXP_17794_7#35 458 e3a269c00e3254e25ecb23656f4c91c7;6317e8e6f9891a0524e71f236dacfdc8 1313 72e1d934b06ebc96424cbfff51935c03;c083fa8ed7bf533893d100fa461cb78b SAMEA3381620 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191857/ERR1191857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191857/ERR1191857_2.fastq.gz 3079320 WGS GPS_GM_2131-sc-2279500 RANDOM 64995761;66801447 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191857/ERR1191857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191857/ERR1191857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191857/17794_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191857/17794_7#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191857/ERR1191857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191857/ERR1191857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191857/17794_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191857/17794_7#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 102425868;4987 ERS719879 ERX1265241 GENOMIC 14934759 384915000 2015-12-17 SC_RUN_17794_7#35 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191857/17794_7#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191857/17794_7#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#35 ERR1106809 SC_EXP_17428_8#186 478 e7b5396b9089fabb71197f118afb058d;63974ce1e284a8e4dbaccf7d6774c3dd 1313 8970e70ecd594f6a5ce022d263966c24;b7c248c68d22e8e74ab5959c3a1ef46e SAMEA3381400 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106809/ERR1106809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106809/ERR1106809_2.fastq.gz 2473510 WGS GPS_GM_1912-sc-2279277 RANDOM 45896953;48888356 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106809/ERR1106809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/009/ERR1106809/ERR1106809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106809/17428_8#186.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106809/17428_8#186.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/009/ERR1106809/ERR1106809_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/009/ERR1106809/ERR1106809_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106809/17428_8#186.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106809/17428_8#186.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73452015;4135 ERS719659 ERX1186340 GENOMIC 14702552 309188750 2015-11-03 SC_RUN_17428_8#186 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106809/17428_8#186.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106809/17428_8#186.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#186 ERR997674 SC_EXP_16399_7#53 213 8993cb226c4c7862eca7326334ce1631;b84be0197f1b47bc3b828f3701348e16 1313 f6c2b70ed303f8049566223543851f75;99a28339ab820367bc03958e404979e6 SAMEA3309725 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997674/ERR997674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997674/ERR997674_2.fastq.gz 5232340 WGS GPS_GM_1743-sc-2206539 RANDOM 181048374;188257351 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997674/ERR997674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997674/ERR997674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997674/16399_7#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997674/16399_7#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997674/ERR997674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997674/ERR997674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997674/16399_7#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997674/16399_7#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301533191;8343 ERS686187 ERX1076710 GENOMIC 13843403 523234000 2015-09-04 SC_RUN_16399_7#53 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997674/16399_7#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997674/16399_7#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#53 ERR997622 SC_EXP_16399_7#1 213 67f05d79886c775b5cb3f7d1e4249f88;a8651ae01b31c233b78cf19cd90cf1fd 1313 be06578d264acf3506f6146c4913faab;92990531f1e59287a827df1ffd54cc15 SAMEA3309664 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997622/ERR997622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997622/ERR997622_2.fastq.gz 6528194 WGS GPS_GM_0295_R1-sc-2206467 RANDOM 223806051;231726353 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997622/ERR997622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997622/ERR997622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997622/16399_7#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997622/16399_7#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997622/ERR997622_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997622/ERR997622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997622/16399_7#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997622/16399_7#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 372959407;10386 ERS686126 ERX1076658 GENOMIC 13843349 652819400 2015-09-04 SC_RUN_16399_7#1 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997622/16399_7#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997622/16399_7#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#1 ERR984283 SC_EXP_16453_2#46 218 b27d7f4ef65732f84d922a78b948ed4c;d8be0376e615771b89abb3c454492645 1313 7e48e92abe9c9b589bd0b70c783029ca;44301491d55391cb0b2653e9f939df64 SAMEA3309800 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984283/ERR984283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984283/ERR984283_2.fastq.gz 5852968 WGS GPS_GM_1818-sc-2206615 RANDOM 104458953;108487459 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984283/ERR984283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984283/ERR984283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984283/16453_2#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984283/16453_2#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984283/ERR984283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984283/ERR984283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984283/16453_2#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984283/16453_2#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 181271915;9635 ERS686262 ERX1065504 GENOMIC 13843317 731621000 2015-08-18 SC_RUN_16453_2#46 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984283/16453_2#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984283/16453_2#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#46 ERR984276 SC_EXP_16453_2#39 218 b63d8596758c697a8a7827244c65f0f2;393304f0ead1090b90d22999f2f1a055 1313 a1e9eb80caad63494982517505810519;6b920a2543ac17d8ca850ec4934e5e35 SAMEA3309793 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984276/ERR984276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984276/ERR984276_2.fastq.gz 5828014 WGS GPS_GM_1811-sc-2206608 RANDOM 102815718;108145701 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984276/ERR984276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984276/ERR984276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984276/16453_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984276/16453_2#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984276/ERR984276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984276/ERR984276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984276/16453_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984276/16453_2#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 178830338;9569 ERS686255 ERX1065497 GENOMIC 13843328 728501750 2015-08-18 SC_RUN_16453_2#39 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984276/16453_2#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984276/16453_2#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#39 ERR750832 SC_EXP_14723_2#9 226 c90ff608bc856f3c6dd20538dc04e4e9;4e8343cd6a809094caf60b590fc37d08 1313 256d2f5b9bd4dcff558794ad4c0a1000;3a094a0c39584b538bbfe0ae1686949e SAMEA2797082 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750832/ERR750832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750832/ERR750832_2.fastq.gz 5342846 WGS GPS_US_PATH3631-sc-2139109 RANDOM 196551377;199427055 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750832/ERR750832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750832/ERR750832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750832/14723_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750832/14723_2#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750832/ERR750832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750832/ERR750832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750832/14723_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750832/14723_2#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 329252184;8612 ERS558693 ERX694514 GENOMIC 12133581 534284600 2015-02-03 SC_RUN_14723_2#9 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750832/14723_2#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750832/14723_2#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#9 ERR913404 SC_EXP_15873_5#8 208 27cd1c955ffba69809ada107784337f6;7e48b40bfd12d7a919aa86b55342fa14 1313 52dce8fd338900beb5d4706b07051e21;8caca2815f0911a2a5ed447d8563326f SAMEA3233105 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913404/ERR913404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913404/ERR913404_2.fastq.gz 6802810 WGS GPS_GM_1249-sc-2205861 RANDOM 221097952;232788723 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913404/ERR913404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913404/ERR913404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913404/15873_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913404/15873_5#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913404/ERR913404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913404/ERR913404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913404/15873_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913404/15873_5#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 369489981;10626 ERS654298 ERX992528 GENOMIC 13308460 680281000 2015-06-17 SC_RUN_15873_5#8 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913404/15873_5#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913404/15873_5#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_5#8 ERR730181 SC_EXP_14520_4#41 222 858c0dac0b4c8b90e39e87ca0fab8a86;d6f6ec5f91a0b19651d656156ced84be 1313 4bf91950c3138a1681d1872362ddc63a;7ed6c702d245de9dc5a542d06ad4c632 SAMEA2696323 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730181/ERR730181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730181/ERR730181_2.fastq.gz 5932000 WGS GPS_GM_0559-sc-2021778 RANDOM 224311054;226748493 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730181/ERR730181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730181/ERR730181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730181/14520_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730181/14520_4#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730181/ERR730181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730181/ERR730181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730181/14520_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730181/14520_4#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 371842748;9575 ERS524902 ERX674127 GENOMIC 11982748 593200000 2015-01-14 SC_RUN_14520_4#41 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730181/14520_4#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730181/14520_4#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#41 ERR730166 SC_EXP_14520_4#26 222 4312646046a7ff1645aef4941cdf7f17;6a1c2140f9915da6c1a771b71bec692b 1313 10690cd68c6861945cb0af0500b45943;ce053cffefa0bf73280f64109f2add42 SAMEA2696308 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730166/ERR730166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730166/ERR730166_2.fastq.gz 5710252 WGS GPS_GM_0544-sc-2021763 RANDOM 214818779;218887180 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730166/ERR730166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730166/ERR730166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730166/14520_4#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730166/14520_4#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730166/ERR730166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730166/ERR730166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730166/14520_4#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730166/14520_4#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 356849690;9230 ERS524887 ERX674112 GENOMIC 11982758 571025200 2015-01-14 SC_RUN_14520_4#26 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730166/14520_4#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730166/14520_4#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#26 ERR730151 SC_EXP_14520_4#11 222 1ca17c3f9254a80fedde6b48f66050aa;175523a05c8995f0b081fb14e7839c4a 1313 357ca6d2dec57061583c631e5f162647;300e318c94f655aeef6b3a54f681b806 SAMEA2696292 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730151/ERR730151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730151/ERR730151_2.fastq.gz 6733652 WGS GPS_GM_0529-sc-2021748 RANDOM 250451734;254372678 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730151/ERR730151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730151/ERR730151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730151/14520_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730151/14520_4#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730151/ERR730151_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730151/ERR730151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730151/14520_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730151/14520_4#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 417696354;10983 ERS524871 ERX674097 GENOMIC 11982768 673365200 2015-01-14 SC_RUN_14520_4#11 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730151/14520_4#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730151/14520_4#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#11 ERR714274 SC_EXP_14410_6#2 230 8abdbbccbc96cdddcf6bf2aa50282d32;9d49ea9327a943e76cfb86e91c230fc4 1313 2a5e2196635781a1561b2f972c18d5eb;80d0fba01fee4e18ca7c29f6d93c0033 SAMEA2627529 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714274/ERR714274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714274/ERR714274_2.fastq.gz 4511516 WGS GPS_GM_0350-sc-2003487 RANDOM 161629995;162865999 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714274/ERR714274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714274/ERR714274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714274/14410_6#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714274/14410_6#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714274/ERR714274_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714274/ERR714274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714274/14410_6#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714274/14410_6#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268929633;7239 ERS497428 ERX658196 GENOMIC 11883266 451151600 2015-01-08 SC_RUN_14410_6#2 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714274/14410_6#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714274/14410_6#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#2 ERR714126 SC_EXP_14410_4#24 220 43b93cb83f37671d06256c4418ee548b;ba5b722e2f9e40397ab13a848b77e432 1313 94450842c478f10064f8ab7f2d36e6ea;effa77413e63c3ff7194fc2c96b74f7d SAMEA2627305 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714126/ERR714126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714126/ERR714126_2.fastq.gz 6760698 WGS GPS_GM_0287-sc-2003243 RANDOM 240337802;240560359 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714126/ERR714126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714126/ERR714126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714126/14410_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714126/14410_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714126/ERR714126_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714126/ERR714126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714126/14410_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714126/14410_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 396585862;10771 ERS497204 ERX658048 GENOMIC 11858329 676069800 2015-01-08 SC_RUN_14410_4#24 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714126/14410_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714126/14410_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#24 ERR438992 SC_EXP_11791_1#49 250 2316d1d20b0ad6af303520fd103d03aa;507e9ee1afd296b7429f7159e1c7bdb0 1313 399c67243f3256319505eca6552492ce;3d163a105cfc3857e807c04591245c67 SAMEA2203352 2014-02-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438992/ERR438992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438992/ERR438992_2.fastq.gz 7337364 WGS PNI0251-sc-2013-10-09T11:41:17Z-1708867 RANDOM 240543859;247498437 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438992/ERR438992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438992/ERR438992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438992/11791_1#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438992/11791_1#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR438/ERR438992/ERR438992_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR438/ERR438992/ERR438992_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438992/11791_1#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438992/11791_1#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 404258214;12097 ERS355856 ERX405655 GENOMIC 8859072 733736400 2014-02-24 SC_RUN_11791_1#49 fasp.sra.ebi.ac.uk:/vol1/run/ERR438/ERR438992/11791_1#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR438/ERR438992/11791_1#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA287820 11791_1#49 ERR714170 SC_EXP_14410_4#68 220 8e33a1406d3d4bc45551e9fdf8ecd101;622441617c98f571e2e448038284cc3e 1313 a3cb184eb0ca409ab2979deff1add948;f65b602cdcf8e852fa9d057f91adcb43 SAMEA2627472 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714170/ERR714170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714170/ERR714170_2.fastq.gz 5370480 WGS GPS_GM_0331-sc-2003411 RANDOM 190023454;191719902 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714170/ERR714170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714170/ERR714170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714170/14410_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714170/14410_4#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714170/ERR714170_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714170/ERR714170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714170/14410_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714170/14410_4#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313584818;8741 ERS497371 ERX658092 GENOMIC 11858287 537048000 2015-01-08 SC_RUN_14410_4#68 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714170/14410_4#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714170/14410_4#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#68 ERR063950 SC_EXP_6925_4#21 237 7db5b59bc207e8741ca1715c74181f20 1313 6960bd8e06ea036c88bb49140f76fff3;0b9459453ade4082c7c4975ee692ce34 SAMEA1026127 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063950/ERR063950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063950/ERR063950_2.fastq.gz 4376627 WGS SMRU2157-sc-2011-01-27-1062370 RANDOM 265871747;276348217 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063950/ERR063950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063950/ERR063950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063950/6925_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063950/ERR063950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063950/ERR063950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063950/6925_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 689267510 ERS021667 ERX041923 GENOMIC 3610952 656494050 2012-01-05 SC_RUN_6925_4#21 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063950/6925_4#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054425 SC_EXP_6753_1#12 224 cb73b4aac111091b16b46a64149550b4 1313 a65152696f948657c8e762fbc24d5271;ef15578a74fa3d86ee125a6bd134e659 SAMEA1025134 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054425/ERR054425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054425/ERR054425_2.fastq.gz 6015354 WGS SMRU1476-sc-2011-01-27-1061689 RANDOM 317617457;322221734 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054425/ERR054425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054425/ERR054425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054425/6753_1#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054425/ERR054425_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054425/ERR054425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054425/6753_1#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 782638499 ERS020986 ERX031471 GENOMIC 3414160 902303100 2011-11-15 SC_RUN_6753_1#12 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054425/6753_1#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR047969 SC_EXP_6630_2#4 233 2be6f2042f676a9ff7001b2c5ab47fdd 1313 01ed9ba13cba8e6742fc8b916b278885;ef93c4e7ba5983f58fee362a6e1b61cd SAMEA1024121 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047969/ERR047969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047969/ERR047969_2.fastq.gz 2006836 WGS SMRU292-sc-2011-01-27-1060481 RANDOM 122795785;123050906 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047969/ERR047969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047969/ERR047969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047969/6630_2#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047969/ERR047969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047969/ERR047969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047969/6630_2#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 310644458 ERS019450 ERX025032 GENOMIC 2952079 301025400 2011-10-11 SC_RUN_6630_2#4 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047969/6630_2#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048038 SC_EXP_6631_1#1 217 e88eef7ff1149f84a193a0e4f3a75c93 1313 760b0a67256db88063dbb8667998b552;3cba9ee208ddb2c86aa952d8f379dd2f SAMEA1023895 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048038/ERR048038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048038/ERR048038_2.fastq.gz 7049855 WGS SMRU313-sc-2011-01-27-1060502 RANDOM 400302104;395727741 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048038/ERR048038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048038/ERR048038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048038/6631_1#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048038/ERR048038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048038/ERR048038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048038/6631_1#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 980470214 ERS019471 ERX025101 GENOMIC 2952100 1057478250 2011-10-11 SC_RUN_6631_1#1 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048038/6631_1#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054450 SC_EXP_6753_2#13 243 e717df64e5356b7e1caa132824cd77f7 1313 8fd86e0b8845babb4a3ed9bb74773845;f166bbe3bef2fb2c364a13cd099d3596 SAMEA1025171 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054450/ERR054450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054450/ERR054450_2.fastq.gz 5356206 WGS SMRU1502-sc-2011-01-27-1061715 RANDOM 276064403;281443863 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054450/ERR054450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054450/ERR054450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054450/6753_2#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054450/ERR054450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054450/ERR054450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054450/6753_2#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 708547680 ERS021012 ERX031496 GENOMIC 3414186 803430900 2011-11-15 SC_RUN_6753_2#13 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054450/6753_2#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054516 SC_EXP_6755_1#8 221 91ef9638854d5ca763d4533da1a90a0b 1313 97bb39db3fd60419e60744f5d041bcd3;5dfa7749659d2d087abb28f7dfabd8a3 SAMEA1024610 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054516/ERR054516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054516/ERR054516_2.fastq.gz 2807600 WGS SMRU776-sc-2011-01-27-1060965 RANDOM 138572396;139045080 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054516/ERR054516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054516/ERR054516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054516/6755_1#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054516/ERR054516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054516/ERR054516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054516/6755_1#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 356410355 ERS020286 ERX031562 GENOMIC 3152285 421140000 2011-11-15 SC_RUN_6755_1#8 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054516/6755_1#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054260 SC_EXP_6710_7#15 233 91205f36c0e4af8de18d32e1707cc204 1313 845a69b25207c0be7b17545dda3c9bf5;4f5502608a4e3e6cddf72812850aebc1 SAMEA1025345 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054260/ERR054260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054260/ERR054260_2.fastq.gz 7749687 WGS SMRU1383-sc-2011-01-27-1061596 RANDOM 458022834;475921582 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054260/ERR054260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054260/ERR054260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054260/6710_7#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054260/ERR054260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054260/ERR054260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054260/6710_7#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1123513916 ERS020893 ERX031306 GENOMIC 3348841 1162453050 2011-11-15 SC_RUN_6710_7#15 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054260/6710_7#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR066229 SC_EXP_6983_3#54 241 c87efd3a1d92e932af9de5b7a2f6afa6 1313 586bbe336f22a04ce022b6c266ca0287;80fa52a7f0966a1ae958b772194a082c SAMEA1025954 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066229/ERR066229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066229/ERR066229_2.fastq.gz 2380610 WGS SMRU2262-sc-2011-01-27-1062475 RANDOM 169637984;171736319 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066229/ERR066229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066229/ERR066229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066229/6983_3#54.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066229/ERR066229_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066229/ERR066229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066229/6983_3#54.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 425442792 ERS021771 ERX044092 GENOMIC 3594882 357091500 2012-01-10 SC_RUN_6983_3#54 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066229/6983_3#54.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR051646 SC_EXP_6731_5#20 232 e8db62664cba93ab42645a20b1da7c4d 1313 c5ce1993e8a4a5096ef1fea8335027e6;d984493e484f7fefc27bfec08f8a1b8e SAMEA1024786 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051646/ERR051646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051646/ERR051646_2.fastq.gz 6316007 WGS SMRU1100-sc-2011-01-27-1061313 RANDOM 379954896;404174174 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051646/ERR051646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051646/ERR051646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051646/6731_5#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051646/ERR051646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051646/ERR051646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051646/6731_5#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1003316608 ERS020610 ERX028694 GENOMIC 3246350 947401050 2011-11-02 SC_RUN_6731_5#20 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051646/6731_5#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR066336 SC_EXP_6983_7#65 239 4e8a77050c943050812e5d3cfff59f5b 1313 0f1b9768efa6da4fc97cc3380b1a059e;e3c1c91144feaf3281025698707e64ce SAMEA1029144 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066336/ERR066336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066336/ERR066336_2.fastq.gz 2379662 WGS SMRU2369-sc-2011-01-27-1062582 RANDOM 167355022;172023001 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066336/ERR066336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066336/ERR066336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066336/6983_7#65.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066336/ERR066336_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066336/ERR066336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066336/6983_7#65.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 425488416 ERS021878 ERX044199 GENOMIC 3596147 356949300 2012-03-19 SC_RUN_6983_7#65 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066336/6983_7#65.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057968 SC_EXP_6823_6#19 249 9309cce0d08936f3436957c09e62811b 1313 a21b6107cf31d5298300bade4eec3753;796bc66b1c171f1d2cc7c184f2335863 SAMEA1026225 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057968/ERR057968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057968/ERR057968_2.fastq.gz 5004630 WGS SMRU1987-sc-2011-01-27-1062200 RANDOM 306248567;317651243 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057968/ERR057968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057968/ERR057968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057968/6823_6#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057968/ERR057968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057968/ERR057968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057968/6823_6#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 792079452 ERS021497 ERX035814 GENOMIC 3469216 750694500 2012-03-22 SC_RUN_6823_6#19 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057968/6823_6#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056776 SC_EXP_6805_2#22 234 73d24bb7fb9eb17beca5d3cfdc54db1c 1313 31d95ea67785edeb96aa7bb736eb5fd5;3e184047d5b774fe5e474cee8ef2cffe SAMEA1025560 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056776/ERR056776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056776/ERR056776_2.fastq.gz 4953688 WGS SMRU1438-sc-2011-01-27-1061651 RANDOM 259323510;271252795 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056776/ERR056776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056776/ERR056776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056776/6805_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056776/ERR056776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056776/ERR056776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056776/6805_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 658491781 ERS020948 ERX034620 GENOMIC 3441196 743053200 2011-11-29 SC_RUN_6805_2#22 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056776/6805_2#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056802 SC_EXP_6805_3#24 233 7680f0377e41214e1bfed3673e2ab055 1313 53313d93ae90e532faacfc9c74fa114d;41709c638f4d10fbe085669372e8b5de SAMEA1025604 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056802/ERR056802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056802/ERR056802_2.fastq.gz 6351489 WGS SMRU1464-sc-2011-01-27-1061677 RANDOM 326174203;338422337 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056802/ERR056802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056802/ERR056802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056802/6805_3#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056802/ERR056802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056802/ERR056802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056802/6805_3#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 848633472 ERS020974 ERX034646 GENOMIC 3441233 952723350 2011-11-29 SC_RUN_6805_3#24 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056802/6805_3#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR050069 SC_EXP_6680_8#14 230 c950bce343a1e013f5696e4b75701d1a 1313 25ebc91fbbab60a8e9c1824c11c53eb2;e1e7fca9fbcefca1ce489ea98474250d SAMEA1023935 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050069/ERR050069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050069/ERR050069_2.fastq.gz 5633775 WGS SMRU206-sc-2011-01-27-1060395 RANDOM 311418700;324709379 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050069/ERR050069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050069/ERR050069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050069/6680_8#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050069/ERR050069_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050069/ERR050069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050069/6680_8#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 790575829 ERS019364 ERX027129 GENOMIC 2950539 845066250 2011-10-25 SC_RUN_6680_8#14 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050069/6680_8#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR060039 SC_EXP_6841_7#11 222 fcf5c65dac0d370533ddfe939af110a3 1313 5798c2b4e7b6edf6194092b88f39846f;1682bd3d2beb50bc5c0e4a6c4230b690 SAMEA1025681 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060039/ERR060039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060039/ERR060039_2.fastq.gz 10975649 WGS SMRU1331-sc-2011-01-27-1061544 RANDOM 730452875;751631869 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060039/ERR060039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060039/ERR060039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060039/6841_7#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060039/ERR060039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060039/ERR060039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060039/6841_7#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1848129236 ERS020841 ERX037877 GENOMIC 3348789 1646347350 2011-12-13 SC_RUN_6841_7#11 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060039/6841_7#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR049089 SC_EXP_6641_6#11 219 b80543f9428a2f5106b3d0a1a3c1957b 1313 fc3a83f5fee455eba51c49fc2656d6ee;0c35628fea029a8e0e706c6fdf610081 SAMEA1024134 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049089/ERR049089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049089/ERR049089_2.fastq.gz 5568265 WGS SMRU155-sc-2011-01-27-1060344 RANDOM 376522137;386372693 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049089/ERR049089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049089/ERR049089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049089/6641_6#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049089/ERR049089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049089/ERR049089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049089/6641_6#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 953743623 ERS019313 ERX026156 GENOMIC 3040282 835239750 2011-10-18 SC_RUN_6641_6#11 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049089/6641_6#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR049114 SC_EXP_6649_8#12 219 caea960f38e5f994b592b80b3156d923 1313 eeea089806268e4230c210ab2f63fd6f;cf552d300731ab2a91b900ced47348eb SAMEA1024190 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049114/ERR049114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049114/ERR049114_2.fastq.gz 8993742 WGS SMRU180-sc-2011-01-27-1060369 RANDOM 487652691;504544229 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049114/ERR049114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049114/ERR049114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049114/6649_8#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049114/ERR049114_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049114/ERR049114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049114/6649_8#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1244179385 ERS019338 ERX026181 GENOMIC 2950513 1349061300 2011-10-18 SC_RUN_6649_8#12 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049114/6649_8#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR316624 SC_EXP_9789_2#53 213 5bd853fbc51e337131ae63d36298d3df 1313 b1ff94239f79e24f8f04d4af7a0aaab4;b74b48b186652505ae3c48853cfaa77f SAMEA2051625 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316624/ERR316624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316624/ERR316624_2.fastq.gz 3215577 WGS D38165-sc-2013-02-18T14:42:21Z-1561747 RANDOM 206409367;227370597 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316624/ERR316624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316624/ERR316624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316624/9789_2#53.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316624/ERR316624_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316624/ERR316624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316624/9789_2#53.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 598055979 ERS214965 ERX289772 GENOMIC 7066790 643115400 2013-07-22 SC_RUN_9789_2#53 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316624/9789_2#53.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#53 ERR2305112 SC_EXP_22695_3#71 424 b659f4fd4adbf419d94cb89f75c10a47;695c052e63cf69025ac0508fb79d88fd 1313 db375b1444acadd40a9615a5085f2db9;3bf48ffd2fcd17bf82e11736d75227fb SAMEA104034660 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305112/ERR2305112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305112/ERR2305112_2.fastq.gz 2551168 WGS e71a9940-13c3-11e7-942b-3c4a9275d6c8 RANDOM 67232591;90419858 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305112/ERR2305112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305112/ERR2305112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305112/22695_3#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305112/22695_3#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305112/ERR2305112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305112/ERR2305112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305112/22695_3#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305112/22695_3#71.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 115517023;4270 ERS1698553 ERX2356422 GENOMIC DN477140L:G9 385226368 2018-02-16 SC_RUN_22695_3#71 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305112/22695_3#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305112/22695_3#71.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808625 ERR052580 SC_EXP_6673_8#3 221 ccb38604d64604bec0e21d79afb39635 1313 f9a083d60bc2ae25f527ad3c633bf691;2083c0fa15ea619756a6ca14cfff2070 SAMEA1024061 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052580/ERR052580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052580/ERR052580_2.fastq.gz 8291222 WGS SMRU243-sc-2011-01-27-1060432 RANDOM 443293585;478140759 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052580/ERR052580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052580/ERR052580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052580/6673_8#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052580/ERR052580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052580/ERR052580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052580/6673_8#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1154101360 ERS019401 ERX029628 GENOMIC 2950581 1243683300 2011-11-07 SC_RUN_6673_8#3 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052580/6673_8#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR1764055 SC_EXP_20957_7#130 434 a05f2664af9760816e9fca5f4f087dd4;6d3b96502ca2d7de7ba79c50969904d4 1313 a81dbabb488405cfedb39c591399fdea;1670cf60fc6bfd27006210c6676ce15d SAMEA4394630 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/005/ERR1764055/ERR1764055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/005/ERR1764055/ERR1764055_2.fastq.gz 3017518 WGS fa27d3d0-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 60936448;70146407 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/005/ERR1764055/ERR1764055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/005/ERR1764055/ERR1764055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764055/20957_7#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764055/20957_7#130.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/005/ERR1764055/ERR1764055_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/005/ERR1764055/ERR1764055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764055/20957_7#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764055/20957_7#130.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93805406;4969 ERS1306079 ERX1829624 GENOMIC DN462612U:C5 377189750 2016-12-20 SC_RUN_20957_7#130 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764055/20957_7#130.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764055/20957_7#130.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#130 ERR1202494 SC_EXP_17966_5#44 464 15d4fa76848efff69ad476fc21197023;3bb5acb577104563122de22c7f20dfb9 1313 766ecd1033489f92f677079733e8b636;2262a62d9989eebcfd7800c7da8f5831 SAMEA3390076 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202494/ERR1202494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202494/ERR1202494_2.fastq.gz 1774490 WGS GPS_MW_C14272-sc-2296347 RANDOM 31572127;31682915 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202494/ERR1202494_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202494/ERR1202494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202494/17966_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202494/17966_5#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202494/ERR1202494_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202494/ERR1202494_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202494/17966_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202494/17966_5#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 43847485;3055 ERS726179 ERX1274736 GENOMIC 15025496 221811250 2016-01-12 SC_RUN_17966_5#44 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202494/17966_5#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202494/17966_5#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#44 ERR1764040 SC_EXP_20957_7#115 429 ee5a82f9c45067b4460c3c9cca4a7743;7cfc6b1a26e84634e81db81236584e95 1313 18d00c34c27cb988fce91086c4702765;acac9e3d2d824e4239414c6481562ef7 SAMEA4392444 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/000/ERR1764040/ERR1764040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/000/ERR1764040/ERR1764040_2.fastq.gz 3414552 WGS f96965d0-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 70219413;80699451 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/000/ERR1764040/ERR1764040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/000/ERR1764040/ERR1764040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764040/20957_7#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764040/20957_7#115.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/000/ERR1764040/ERR1764040_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/000/ERR1764040/ERR1764040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764040/20957_7#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764040/20957_7#115.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 108766126;5542 ERS1303893 ERX1829609 GENOMIC DN462612U:D3 426819000 2016-12-20 SC_RUN_20957_7#115 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764040/20957_7#115.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764040/20957_7#115.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#115 ERR1202556 SC_EXP_17966_5#106 464 121a67dc854afe91e6370d917a18ce23;76dace5e32c380090431c292d5b34ba1 1313 cf664ed41f801051bdede438122ed6c5;d343a503f8ed8087954bb33055f0133e SAMEA3390037 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202556/ERR1202556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202556/ERR1202556_2.fastq.gz 1930468 WGS GPS_MW_BHAAGX-sc-2296282 RANDOM 34211321;36041012 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202556/ERR1202556_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202556/ERR1202556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202556/17966_5#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202556/17966_5#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202556/ERR1202556_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202556/ERR1202556_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202556/17966_5#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202556/17966_5#106.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 48637159;3270 ERS726140 ERX1274798 GENOMIC 15024704 241308500 2016-01-12 SC_RUN_17966_5#106 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202556/17966_5#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202556/17966_5#106.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#106 ERR1453511 SC_EXP_19341_2#44 462 d423e7632273426e0e7fda1739bc3291;b16459ba357130a656e83754a887030c 1313 fd97e64bf47b4d5a8978736c92edcf43;20c8e739e22a8b89e6e61857f062c8c1 SAMEA3506039 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453511/ERR1453511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453511/ERR1453511_2.fastq.gz 2267604 WGS GPS_MW_BKR5CY-sc-2377525 RANDOM 46226271;52599776 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453511/ERR1453511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453511/ERR1453511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453511/19341_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453511/19341_2#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453511/ERR1453511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453511/ERR1453511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453511/19341_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453511/19341_2#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70758828;3869 ERS813188 ERX1523989 GENOMIC 15972480 283450500 2016-06-14 SC_RUN_19341_2#44 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453511/19341_2#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453511/19341_2#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#44 ERR1192108 SC_EXP_17794_8#97 441 b1bb09c55d1cb9e74b20408f6763afda;2cb7cbcd695ea8009fde743583d70e2f 1313 19de9e0c98187dd07a355a67d5dc3c89;45f82353ffb41462ac5b1e2aa18eea83 SAMEA3381644 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192108/ERR1192108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192108/ERR1192108_2.fastq.gz 3093368 WGS GPS_GM_2155-sc-2279524 RANDOM 59603272;64241908 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192108/ERR1192108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192108/ERR1192108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192108/17794_8#97.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192108/17794_8#97.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1192108/ERR1192108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1192108/ERR1192108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192108/17794_8#97.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192108/17794_8#97.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 95929957;5042 ERS719903 ERX1265492 GENOMIC 14941640 386671000 2015-12-17 SC_RUN_17794_8#97 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192108/17794_8#97.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192108/17794_8#97.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#97 ERR997673 SC_EXP_16399_7#52 213 a10005ce1d22edd0b2700cf79c10f4b0;e44e0dc8b2389548d51ed4ddc7f1353a 1313 d4a1ce9c31c5fa1d2b2f4785bf291362;0cbe24ce840fddd49852c70d3cf7a1bb SAMEA3309724 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997673/ERR997673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997673/ERR997673_2.fastq.gz 6063062 WGS GPS_GM_1742-sc-2206538 RANDOM 205411056;213589305 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997673/ERR997673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997673/ERR997673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997673/16399_7#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997673/16399_7#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997673/ERR997673_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997673/ERR997673_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997673/16399_7#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997673/16399_7#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 342013907;9791 ERS686186 ERX1076709 GENOMIC 13843391 606306200 2015-09-04 SC_RUN_16399_7#52 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997673/16399_7#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997673/16399_7#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#52 ERR1192069 SC_EXP_17794_8#58 441 33e081054c002afe6acc33d22cda404e;ed0c34a4df75531a03251031817f93e3 1313 0b2b50ae7dc7f25eae8974c78df70bdc;d9a3e51b72c1be9d34104e3f64709dd2 SAMEA3381593 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192069/ERR1192069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192069/ERR1192069_2.fastq.gz 2536790 WGS GPS_GM_2104-sc-2279472 RANDOM 52844218;52959421 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192069/ERR1192069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192069/ERR1192069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192069/17794_8#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192069/17794_8#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1192069/ERR1192069_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1192069/ERR1192069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192069/17794_8#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192069/17794_8#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81541042;4135 ERS719852 ERX1265453 GENOMIC 14941550 317098750 2015-12-17 SC_RUN_17794_8#58 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192069/17794_8#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192069/17794_8#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#58 ERR1191823 SC_EXP_17794_7#1 458 066ef79f2786620684aa8b7e37cef268;e5ffa4a3faafda0bda3b90bc1ac2f29b 1313 0e44c4c9311623b8dca4ee1992d53a7b;4e8ac1f9ecf8c3a67878473d7e5282ba SAMEA3381409 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191823/ERR1191823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191823/ERR1191823_2.fastq.gz 3477728 WGS GPS_GM_1921-sc-2279286 RANDOM 70828621;70493396 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191823/ERR1191823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191823/ERR1191823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191823/17794_7#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191823/17794_7#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191823/ERR1191823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191823/ERR1191823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191823/17794_7#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191823/17794_7#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 109524493;5696 ERS719668 ERX1265207 GENOMIC 14934731 434716000 2015-12-17 SC_RUN_17794_7#1 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191823/17794_7#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191823/17794_7#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#1 ERR1192024 SC_EXP_17794_8#13 441 f1e58e576261735de41a18d327cedab0;70c78b563fceb8bcc7549d3e1c7823be 1313 5b139da6b3e05e985230fd7f808935dd;a519efee90c30827e1c757b0dcd43f13 SAMEA3381495 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192024/ERR1192024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192024/ERR1192024_2.fastq.gz 2666288 WGS GPS_GM_2046-sc-2279373 RANDOM 50666885;53145048 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192024/ERR1192024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192024/ERR1192024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192024/17794_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192024/17794_8#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192024/ERR1192024_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192024/ERR1192024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192024/17794_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192024/17794_8#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79569749;4462 ERS719754 ERX1265408 GENOMIC 14941580 333286000 2015-12-17 SC_RUN_17794_8#13 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192024/17794_8#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192024/17794_8#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#13 ERR997627 SC_EXP_16399_7#6 213 e0520df7e443848342b0bc972ae0f4ef;816e7958c3dfc50ae84a28eaa25c26a8 1313 bf7bf21f5d3a0a896c0f7727f7b8ab16;ef0038928b93abe6276a1ed090e19cc9 SAMEA3309669 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997627/ERR997627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997627/ERR997627_2.fastq.gz 6818530 WGS GPS_GM_1687-sc-2206472 RANDOM 230258020;239294232 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997627/ERR997627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997627/ERR997627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997627/16399_7#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997627/16399_7#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997627/ERR997627_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997627/ERR997627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997627/16399_7#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997627/16399_7#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 385342321;10977 ERS686131 ERX1076663 GENOMIC 13843409 681853000 2015-09-04 SC_RUN_16399_7#6 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997627/16399_7#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997627/16399_7#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#6 ERR984289 SC_EXP_16453_2#52 218 a463b41c3479c19bfd529a651d1084a6;102163bdaad316beae02c2683f635932 1313 69a318d7bc43acbcd072e8a87f07e50b;8ad0be398a45b6b75a49fc7c364d5e1b SAMEA3309806 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984289/ERR984289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984289/ERR984289_2.fastq.gz 6021598 WGS GPS_GM_1824-sc-2206621 RANDOM 103423947;108656946 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984289/ERR984289_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984289/ERR984289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984289/16453_2#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984289/16453_2#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984289/ERR984289_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984289/ERR984289_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984289/16453_2#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984289/16453_2#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177727841;9911 ERS686268 ERX1065510 GENOMIC 13843294 752699750 2015-08-18 SC_RUN_16453_2#52 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984289/16453_2#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984289/16453_2#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#52 ERR984246 SC_EXP_16453_2#9 218 e93a159fbf2be5d7ba7b7e6e34e77065;4fa2ecfb79f8766e6d7939f7b5ded9d6 1313 e76815759c86779a97ac3ea120e5ad28;ec448c96b643471946ca862d78547163 SAMEA3309763 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984246/ERR984246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984246/ERR984246_2.fastq.gz 5842836 WGS GPS_GM_1781-sc-2206577 RANDOM 99757782;106514290 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984246/ERR984246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984246/ERR984246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984246/16453_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984246/16453_2#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984246/ERR984246_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984246/ERR984246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984246/16453_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984246/16453_2#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 174589485;9662 ERS686225 ERX1065467 GENOMIC 13843253 730354500 2015-08-18 SC_RUN_16453_2#9 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984246/16453_2#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984246/16453_2#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#9 ERR984249 SC_EXP_16453_2#12 218 0dbf475fbc7b75138e25b7a2452e494b;0cd5bcf32b48cfe5ecea08c969c93b68 1313 f779ac03b497f65e03407e3cc092cfd7;194e8a472845766383a50a11daeb99f7 SAMEA3309766 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984249/ERR984249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984249/ERR984249_2.fastq.gz 5935750 WGS GPS_GM_1784-sc-2206580 RANDOM 101317213;106289959 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984249/ERR984249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984249/ERR984249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984249/16453_2#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984249/16453_2#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984249/ERR984249_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984249/ERR984249_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984249/16453_2#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984249/16453_2#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 174229494;9775 ERS686228 ERX1065470 GENOMIC 13843289 741968750 2015-08-18 SC_RUN_16453_2#12 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984249/16453_2#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984249/16453_2#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#12 ERR979875 SC_EXP_16288_3#2 234 5a49f41e618f03911dde38a4d5d94b9b;50237d97b4b9b557bdecbc41224058cf 1313 e8e4869684c684dc400872eacd681380;2ff0e723d28badf9a6605800851bb8b1 SAMEA3232345 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979875/ERR979875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979875/ERR979875_2.fastq.gz 4215108 WGS GPS_NP_0002-sc-2205262 RANDOM 141252555;139205027 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979875/ERR979875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979875/ERR979875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979875/16288_3#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979875/16288_3#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979875/ERR979875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979875/ERR979875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979875/16288_3#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979875/16288_3#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 227560273;6614 ERS653555 ERX1056747 GENOMIC 13296148 421510800 2015-08-12 SC_RUN_16288_3#2 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979875/16288_3#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979875/16288_3#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#2 ERR908933 SC_EXP_15841_1#84 206 590c9efd72e6532c6ad04cc344b9f40f;272ec62cd0a9f0aacc79f8ce2ec322cc 1313 c1ae84dbfafc13e55bb1dbd6fb8be605;aa67529f797f73c75fedb914c9fce384 SAMEA3206871 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908933/ERR908933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908933/ERR908933_2.fastq.gz 5437074 WGS GPS_ZA_carriage_SP237-sc-2191805 RANDOM 171826533;177585421 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908933/ERR908933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908933/ERR908933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908933/15841_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908933/15841_1#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908933/ERR908933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908933/ERR908933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908933/15841_1#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908933/15841_1#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282953418;8663 ERS638881 ERX988188 GENOMIC 13227483 543707400 2015-06-09 SC_RUN_15841_1#84 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908933/15841_1#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908933/15841_1#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#84 ERR870239 SC_EXP_15531_6#47 212 3c7a2e1d3a2401ca4cfabd060146a766;68396a77d438b2a9708c1b40e65d253a 1313 6b74c7aef4f980c20e3a7bb4e27e2d55;b6ab867370e39e5991364c847bc22edc SAMEA3172990 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870239/ERR870239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870239/ERR870239_2.fastq.gz 4137748 WGS GPS_GM_1134-sc-2190549 RANDOM 160854711;152133797 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870239/ERR870239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870239/ERR870239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870239/15531_6#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870239/15531_6#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870239/ERR870239_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870239/ERR870239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870239/15531_6#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870239/15531_6#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259067564;6569 ERS627233 ERX949840 GENOMIC 12870093 413774800 2015-05-06 SC_RUN_15531_6#47 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870239/15531_6#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870239/15531_6#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#47 ERR862341 SC_EXP_15378_2#83 205 4451b455debf6d76bb8552bb3d036bcc;ef5ec17d4841134870faa86dee497897 1313 ffd422488714a16284c4a6efb6f8ec9c;9a073305d71f05cb675e2b7f578c4808 SAMEA3171022 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862341/ERR862341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862341/ERR862341_2.fastq.gz 4214830 WGS GPS_MW_C15275_R1-sc-2139584 RANDOM 121222631;125549157 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862341/ERR862341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862341/ERR862341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862341/15378_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862341/15378_2#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862341/ERR862341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862341/ERR862341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862341/15378_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862341/15378_2#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 197014121;6793 ERS625413 ERX941991 GENOMIC 12810468 421483000 2015-04-21 SC_RUN_15378_2#83 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862341/15378_2#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862341/15378_2#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#83 ERR862335 SC_EXP_15378_2#77 205 c676507fc9f0a0c7c7d568d84ac6288f;b75dc2b3f0c5081ab51a043ef247e4ad 1313 46352c5d15cc803d0034624435365e83;6e8c9f5390cb6905e036f7bfbb237e52 SAMEA3171016 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862335/ERR862335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862335/ERR862335_2.fastq.gz 3434204 WGS GPS_MW_D49723_R1-sc-2139578 RANDOM 99331169;102688225 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862335/ERR862335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862335/ERR862335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862335/15378_2#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862335/15378_2#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862335/ERR862335_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862335/ERR862335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862335/15378_2#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862335/15378_2#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 161062522;5672 ERS625407 ERX941985 GENOMIC 12810491 343420400 2015-04-21 SC_RUN_15378_2#77 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862335/15378_2#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862335/15378_2#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#77 ERR862475 SC_EXP_15378_4#27 205 779423b1fd3e770451abcd5f54c0735d;8d1be118b9902827a416d6c50d3c17b8 1313 17d9e37885ae485d874055d95c935a93;80daf10ee887fa385567b588a8d4edc9 SAMEA3171162 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862475/ERR862475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862475/ERR862475_2.fastq.gz 3568422 WGS GPS_MW_BKR2VM-sc-2139725 RANDOM 120786581;123589973 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862475/ERR862475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862475/ERR862475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862475/15378_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862475/15378_4#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862475/ERR862475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862475/ERR862475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862475/15378_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862475/15378_4#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 198002021;5798 ERS625553 ERX942125 GENOMIC 12826892 356842200 2015-04-21 SC_RUN_15378_4#27 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862475/15378_4#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862475/15378_4#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#27 ERR774642 SC_EXP_14936_5#78 211 dfc77d04c83ddb4e62b5b576315d8030;e9b0a9c1be8cc0c0efbc34f74bd66363 1313 b33f0889ca144537bdca6d21b2324cce;3216399bea3d89f41165b444d1b1bdfa SAMEA2783744 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774642/ERR774642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774642/ERR774642_2.fastq.gz 4281718 WGS GPS_MW_C23437_R1-sc-2022239 RANDOM 159008605;159770183 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774642/ERR774642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774642/ERR774642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774642/14936_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774642/14936_5#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774642/ERR774642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774642/ERR774642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774642/14936_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774642/14936_5#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263338847;6656 ERS553489 ERX717521 GENOMIC 12403533 428171800 2015-03-03 SC_RUN_14936_5#78 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774642/14936_5#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774642/14936_5#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#78 ERR774620 SC_EXP_14936_5#56 211 14e9c5da43b4bae04bfc6905385d9993;56920dbc29c71fd9f59fa871cfd8e642 1313 46fb4e9e41675571add063fc30e8ef68;de2ed2f5156494b837bba88e08db2874 SAMEA2783701 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774620/ERR774620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774620/ERR774620_2.fastq.gz 5021110 WGS GPS_MW_4813_R1-sc-2022196 RANDOM 182425676;185372045 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774620/ERR774620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774620/ERR774620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774620/14936_5#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774620/14936_5#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774620/ERR774620_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774620/ERR774620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774620/14936_5#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774620/14936_5#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 306553105;8113 ERS553446 ERX717499 GENOMIC 12403554 502111000 2015-03-03 SC_RUN_14936_5#56 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774620/14936_5#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774620/14936_5#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#56 ERR751018 SC_EXP_14723_4#17 213 9f69afd19e149f6bd5d1a0f71cfac97a;9e60142e30106f6013afdefdafe971c4 1313 6b13b631d4ac64d684209cf5f90584dd;057ddcd7302fb597fb78b45484599bbe SAMEA2797280 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751018/ERR751018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751018/ERR751018_2.fastq.gz 5679072 WGS GPS_US_PATH5480-sc-2139309 RANDOM 212465060;216158272 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751018/ERR751018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751018/ERR751018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751018/14723_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751018/14723_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751018/ERR751018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751018/ERR751018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751018/14723_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751018/14723_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 356031387;9081 ERS558891 ERX694700 GENOMIC 12133786 567907200 2015-02-03 SC_RUN_14723_4#17 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751018/14723_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751018/14723_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_4#17 ERR730241 SC_EXP_14520_5#8 224 74c8b266856b5bf484410d082c374cd1;dfe220f1ad24f90d3ea18e46a9e308ec 1313 12ddb26a17c2fe8aa1cc5f6aaa102291;92a93996ae5cecf1d521ac0a11d234f9 SAMEA2696386 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730241/ERR730241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730241/ERR730241_2.fastq.gz 6621128 WGS GPS_GM_0621-sc-2021841 RANDOM 240097431;244436067 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730241/ERR730241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730241/ERR730241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730241/14520_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730241/14520_5#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730241/ERR730241_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730241/ERR730241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730241/14520_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730241/14520_5#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 402415284;10838 ERS524965 ERX674187 GENOMIC 11982924 662112800 2015-01-14 SC_RUN_14520_5#8 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730241/14520_5#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730241/14520_5#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#8 ERR750879 SC_EXP_14723_2#61 226 c15db9d55336bf46881bd865b7d62838;22326ce578be403543566854d236fb37 1313 d8e5b8964466562fb6e9f1b35ea92ede;2ba590afc830f2a849f70b283874967a SAMEA2797134 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750879/ERR750879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750879/ERR750879_2.fastq.gz 6220604 WGS GPS_US_PATH3762-sc-2139161 RANDOM 228817093;233353447 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750879/ERR750879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750879/ERR750879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750879/14723_2#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750879/14723_2#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750879/ERR750879_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750879/ERR750879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750879/14723_2#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750879/14723_2#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 384906512;9982 ERS558745 ERX694561 GENOMIC 12133635 622060400 2015-02-03 SC_RUN_14723_2#61 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750879/14723_2#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750879/14723_2#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#61 ERR730404 SC_EXP_14520_6#76 215 11181405bbdfbb60e3f84f2b1e0754e2;e2282ff456c49351d56d992d9b2e594e 1313 edb2acbe9b8ec4f77c6e8deb288d3162;18dfa220c432e394bd10ee517f45f9a3 SAMEA2696549 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730404/ERR730404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730404/ERR730404_2.fastq.gz 5154922 WGS GPS_GM_0784-sc-2022005 RANDOM 188198172;191789125 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730404/ERR730404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730404/ERR730404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730404/14520_6#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730404/14520_6#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730404/ERR730404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730404/ERR730404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730404/14520_6#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730404/14520_6#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312495420;8464 ERS525128 ERX674350 GENOMIC 11983332 515492200 2015-01-14 SC_RUN_14520_6#76 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730404/14520_6#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730404/14520_6#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#76 ERR730189 SC_EXP_14520_4#49 222 a43589a3c9e01270264c57eff2164f53;e6df5478fc2f31d72eb1cb941d31fec7 1313 be55cd84a6f2aaf014b20727f95d7c26;4fca4c03692a374932dbe98e65db09ee SAMEA2696331 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730189/ERR730189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730189/ERR730189_2.fastq.gz 5617500 WGS GPS_GM_0567-sc-2021786 RANDOM 208117362;211720823 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730189/ERR730189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730189/ERR730189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730189/14520_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730189/14520_4#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730189/ERR730189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730189/ERR730189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730189/14520_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730189/14520_4#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 346545082;9285 ERS524910 ERX674135 GENOMIC 11982749 561750000 2015-01-14 SC_RUN_14520_4#49 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730189/14520_4#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730189/14520_4#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#49 ERR730499 SC_EXP_14520_7#76 213 e84b847a1bc8e3bc81a88cada467e184;2475e0effa32efff031bc76cd45fb154 1313 6b374d8bc9c2634b0a4aff7d926988d7;2dbaddfa757c859747c0bf534bdec41c SAMEA2696644 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730499/ERR730499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730499/ERR730499_2.fastq.gz 4593806 WGS GPS_GM_0879-sc-2022101 RANDOM 169591324;172353557 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730499/ERR730499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730499/ERR730499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730499/14520_7#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730499/14520_7#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730499/ERR730499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730499/ERR730499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730499/14520_7#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730499/14520_7#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279790390;7426 ERS525223 ERX674445 GENOMIC 11983429 459380600 2015-01-14 SC_RUN_14520_7#76 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730499/14520_7#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730499/14520_7#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_7#76 ERR425520 SC_EXP_11511_8#86 288 274266752910344d57ca40f64f55742b;75f652f2dc7b01e5f34cab631955a097 1313 a50e4b657c938e96e48cba859a824d89;5007f035b5bfb3101909739dce7f89fa SAMEA2204182 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425520/ERR425520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425520/ERR425520_2.fastq.gz 2936564 WGS PATH3380-sc-2013-10-09T11:56:50Z-1712775 RANDOM 95706131;97244588 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425520/ERR425520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425520/ERR425520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425520/11511_8#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425520/11511_8#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425520/ERR425520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425520/ERR425520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425520/11511_8#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425520/11511_8#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 158443732;4893 ERS356693 ERX391795 GENOMIC 8529253 293656400 2014-02-10 SC_RUN_11511_8#86 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425520/11511_8#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425520/11511_8#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_8#86 ERR714149 SC_EXP_14410_4#47 220 e193925153715f6e1f0247598481fb47;5c773aba1450136bbaa09a1b05176aac 1313 526db5ca54f45668b85b02d924d1a982;7d880052dbb7f5ec76fb9d55efad5487 SAMEA2627393 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714149/ERR714149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714149/ERR714149_2.fastq.gz 5345918 WGS GPS_GM_0310-sc-2003331 RANDOM 189608605;190542215 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714149/ERR714149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714149/ERR714149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714149/14410_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714149/14410_4#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714149/ERR714149_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714149/ERR714149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714149/14410_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714149/14410_4#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 311961165;8569 ERS497292 ERX658071 GENOMIC 11858320 534591800 2015-01-08 SC_RUN_14410_4#47 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714149/14410_4#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714149/14410_4#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#47 ERR048199 SC_EXP_6631_7#18 213 6f99e8f7ea3337b216e69a07f46bd491 1313 01bd6203f6e28f8fb29a5261661b28be;95cfe0c1f87496333f8cc32a7c75a271 SAMEA1023693 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048199/ERR048199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048199/ERR048199_2.fastq.gz 4345438 WGS SMRU522-sc-2011-01-27-1060711 RANDOM 226481207;220884883 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048199/ERR048199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048199/ERR048199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048199/6631_7#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048199/ERR048199_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048199/ERR048199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048199/6631_7#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 577512754 ERS019680 ERX025262 GENOMIC 3037841 651815700 2011-10-11 SC_RUN_6631_7#18 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048199/6631_7#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054400 SC_EXP_6736_8#11 242 a8d7ae2a804a5428f0b105b80e9947d0 1313 2688909ca359ba8fbdbc465e29179656;8f2bf1bf62fd3cb3432fc0f33bc86eb7 SAMEA1025301 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054400/ERR054400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054400/ERR054400_2.fastq.gz 7455407 WGS SMRU1307-sc-2011-01-27-1061520 RANDOM 411160807;438872341 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054400/ERR054400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054400/ERR054400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054400/6736_8#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054400/ERR054400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054400/ERR054400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054400/6736_8#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1061511830 ERS020817 ERX031446 GENOMIC 3308154 1118311050 2011-11-15 SC_RUN_6736_8#11 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054400/6736_8#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR068299 SC_EXP_7004_3#56 245 c8888412d0f23ae7f020c4d382cde817 1313 8d5071c276893da8a9171737ba77bef0;711439b034e5bcbcff389461de74d683 SAMEA1033586 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068299/ERR068299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068299/ERR068299_2.fastq.gz 926427 WGS C14971-sc-2011-08-23T15:08:41Z-1261876 RANDOM 58289830;53771935 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068299/ERR068299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068299/ERR068299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068299/7004_3#56.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068299/ERR068299_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068299/ERR068299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068299/7004_3#56.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 142912779 ERS050457 ERX046162 GENOMIC 3723411 138964050 2012-01-16 SC_RUN_7004_3#56 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068299/7004_3#56.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA080989 7004_3#56 ERR066255 SC_EXP_6983_4#80 238 3ace6119539eba50e46ae115da8b357c 1313 aab8419e38dbaab47c051a9c3f8a3fef;31be872bdf92ed0ea8d50b0b152d63bd SAMEA1026261 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066255/ERR066255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066255/ERR066255_2.fastq.gz 2379293 WGS SMRU2288-sc-2011-01-27-1062501 RANDOM 164431361;165948841 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066255/ERR066255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066255/ERR066255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066255/6983_4#80.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066255/ERR066255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066255/ERR066255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066255/6983_4#80.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 423417868 ERS021797 ERX044118 GENOMIC 3594908 356893950 2012-01-10 SC_RUN_6983_4#80 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066255/6983_4#80.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR086008 SC_EXP_7068_2#56 241 931cc64644d7eecc24413b0d3da66015 1313 2b8ebf3cabe778b1768353029f7aba73;715de4fd93eca4194b1e038ddd14d81b SAMEA1033586 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086008/ERR086008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086008/ERR086008_2.fastq.gz 1467670 WGS C14971-sc-2011-08-23T15:08:41Z-1261876 RANDOM 98194292;96152645 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086008/ERR086008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086008/ERR086008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR086/ERR086008/7068_2#56.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR086/ERR086008/ERR086008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR086/ERR086008/ERR086008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR086/ERR086008/7068_2#56.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 250813642 ERS050457 ERX063774 GENOMIC 3723411 220150500 2012-02-07 SC_RUN_7068_2#56 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR086/ERR086008/7068_2#56.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA087412 7004_3#56 ERR039588 SC_EXP_6259_6#5 172 ed4a44d27c1769b9b0c5f7e9844e4506 1313 d13f3d538e54f57b9e7308abdb228950;45ea25dd25cd4ee8f666eff916342402 SAMEA974650 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039588/ERR039588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039588/ERR039588_2.fastq.gz 6736088 WGS SMRU29-sc-2011-01-27-1026454 RANDOM 332729525;343031141 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039588/ERR039588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039588/ERR039588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039588/6259_6#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039588/ERR039588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039588/ERR039588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039588/6259_6#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 879692686 ERS019187 ERX016761 GENOMIC 2590907 1010413200 2011-07-27 SC_RUN_6259_6#5 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039588/6259_6#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR039576 SC_EXP_6259_5#17 197 ed291ec7528ee697023842cfa5c55f33 1313 73f069882ecf51d04df07cf705d43899;828a023b9af1c4ad1645130843935bfa SAMEA974682 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039576/ERR039576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039576/ERR039576_2.fastq.gz 4210473 WGS SMRU17-sc-2011-01-27-1026442 RANDOM 220328943;227894977 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039576/ERR039576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039576/ERR039576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039576/6259_5#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039576/ERR039576_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039576/ERR039576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039576/6259_5#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 579863869 ERS019175 ERX016749 GENOMIC 2590861 631570950 2011-07-27 SC_RUN_6259_5#17 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039576/6259_5#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2305624 SC_EXP_23495_7#68 373 db6291242293e1f5b31569c2136022fe;ef8e8608ed674ee9b1eb854d50f3853c 1313 fee728db7e545c807fc1dc9a25a88d57;dd2ec4a980ddf67286b04f13e72d81fa SAMEA104034847 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305624/ERR2305624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305624/ERR2305624_2.fastq.gz 2564732 WGS f58d0620-13c3-11e7-942b-3c4a9275d6c8 RANDOM 71570172;77997606 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305624/ERR2305624_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305624/ERR2305624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305624/23495_7#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305624/23495_7#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305624/ERR2305624_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305624/ERR2305624_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305624/23495_7#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305624/23495_7#68.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 107776125;4341 ERS1698740 ERX2356934 GENOMIC DN483688I:D9 387274532 2018-02-16 SC_RUN_23495_7#68 98 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305624/23495_7#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305624/23495_7#68.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808814 ERR2305527 SC_EXP_22984_8#65 371 a1612e430a015655ade2009a682e3ed4;2a69b42b4db5300ceb4bd4f11b5b0429 1313 d414881e48e14bf06c7f32fa371499a7;9d5dc5af2134b62d7f93a7c3fec5b315 SAMEA104035035 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305527/ERR2305527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305527/ERR2305527_2.fastq.gz 1867802 WGS 03a014f0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 51616124;68961499 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305527/ERR2305527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305527/ERR2305527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305527/22984_8#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305527/22984_8#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305527/ERR2305527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305527/ERR2305527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305527/22984_8#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305527/22984_8#65.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 87418085;3226 ERS1698928 ERX2356837 GENOMIC DN483712O:A9 282038102 2018-02-16 SC_RUN_22984_8#65 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305527/22984_8#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305527/22984_8#65.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809004 ERR2305463 SC_EXP_22984_8#1 363 bdee164538a14e44a2ce50c28ddab867;c1fa54cce8bfa8088cda06f3bc043ea3 1313 3cfcd3e8e9dda6429fb2d42cdf8691ea;f6df70501571c16da91a7a20b39b0801 SAMEA104034971 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305463/ERR2305463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305463/ERR2305463_2.fastq.gz 1951466 WGS 017aeb00-13c4-11e7-942b-3c4a9275d6c8 RANDOM 54028512;72274241 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305463/ERR2305463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305463/ERR2305463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305463/22984_8#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305463/22984_8#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305463/ERR2305463_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305463/ERR2305463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305463/22984_8#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305463/22984_8#1.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 91600723;3323 ERS1698864 ERX2356773 GENOMIC DN483712O:A1 294671366 2018-02-16 SC_RUN_22984_8#1 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305463/22984_8#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305463/22984_8#1.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808940 ERR2305355 SC_EXP_22695_3#314 429 367a7a7587ece692a2c9703211c2cccd;8362fef6ede32a77a764a76f8f1a6397 1313 504a206794fecf19c25fc4f6e9f75a5e;e5f7dc73d91df4b92b91d39af711c608 SAMEA104035093 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305355/ERR2305355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305355/ERR2305355_2.fastq.gz 2731686 WGS 09a75b10-13c4-11e7-942b-3c4a9275d6c8 RANDOM 72414862;98752407 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305355/ERR2305355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305355/ERR2305355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305355/22695_3#314.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305355/22695_3#314.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305355/ERR2305355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305355/ERR2305355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305355/22695_3#314.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305355/22695_3#314.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 125153752;4610 ERS1698986 ERX2356665 GENOMIC DN477147S:E4 412484586 2018-02-16 SC_RUN_22695_3#314 98 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305355/22695_3#314.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305355/22695_3#314.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809063 ERR2305278 SC_EXP_22695_3#237 428 79f41523d066837e564a7f3b48cb1d81;a8bec9b6d24e6f727f89bc2f7d943d94 1313 9089e40477cc51bcb4ca8befe1baf2ef;185b14890ad1586b075d8fc25e307133 SAMEA104034921 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305278/ERR2305278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305278/ERR2305278_2.fastq.gz 2100208 WGS fbe37db0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 56200527;76318358 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305278/ERR2305278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305278/ERR2305278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305278/22695_3#237.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305278/22695_3#237.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305278/ERR2305278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305278/ERR2305278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305278/22695_3#237.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305278/22695_3#237.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 96479677;3579 ERS1698814 ERX2356588 GENOMIC DN477146R:G6 317131408 2018-02-16 SC_RUN_22695_3#237 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305278/22695_3#237.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305278/22695_3#237.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808889 ERR2091122 SC_EXP_22841_4#13 435 e73f206019fedec74ed8cf32ee024bb4;9c84209bd49ee44d8f63e4ebd214100f 1313 6110eaf410b2cc1c6c5970509cc4108c;0c0e40d2c1b0253e38f4a836c3866287 SAMEA104035307 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091122/ERR2091122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091122/ERR2091122_2.fastq.gz 2758522 WGS 97691120-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 56634910;60308738 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091122/ERR2091122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2091122/ERR2091122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091122/22841_4#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091122/22841_4#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2091122/ERR2091122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2091122/ERR2091122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091122/22841_4#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091122/22841_4#13.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82920030;4564 ERS1699200 ERX2147916 GENOMIC DN477152P:E2 344815250 2017-08-08 SC_RUN_22841_4#13 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091122/22841_4#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091122/22841_4#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#13 ERR2091293 SC_EXP_22841_4#184 436 e280290762e8f2260e2c45aa889959ab;a7a186714f2dddb232f32b06dbd6354a 1313 9a15f0703f2ecbbfcc50b2acc3561de4;c1e3b36624e5a632304c239c20068f3f SAMEA104035492 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091293/ERR2091293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091293/ERR2091293_2.fastq.gz 4255026 WGS a2b11910-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 84527753;92405601 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091293/ERR2091293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091293/ERR2091293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091293/22841_4#184.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091293/22841_4#184.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091293/ERR2091293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091293/ERR2091293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091293/22841_4#184.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091293/22841_4#184.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 126926397;7008 ERS1699385 ERX2148087 GENOMIC DN477153Q:C12 531878250 2017-08-08 SC_RUN_22841_4#184 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091293/22841_4#184.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091293/22841_4#184.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#184 ERR2091013 SC_EXP_22841_3#92 384 1b2daa279df3fc576b4314ebc6e23f83;d1b8ec00d74c8c2b46b23761c18d8a6b 1313 7b9da87067da1c78d8bfc6933e954eb6;3f9af0000ead09149067a385629fd937 SAMEA104035869 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091013/ERR2091013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091013/ERR2091013_2.fastq.gz 2326748 WGS c4170e20-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 52706124;54575240 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091013/ERR2091013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091013/ERR2091013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091013/22841_3#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091013/22841_3#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091013/ERR2091013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091013/ERR2091013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091013/22841_3#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091013/22841_3#92.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75553728;3807 ERS1699762 ERX2147807 GENOMIC DN483669F:E12 290843500 2017-08-08 SC_RUN_22841_3#92 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091013/22841_3#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091013/22841_3#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#92 ERR913163 SC_EXP_15873_2#11 205 225c85b42d2f627168ce0f06232c1aa7;34522dd33a5430164fa774e2bf4f5af6 1313 05c87475252a0546d022bb426edfaa87;3ef02b8308e84ec6634e03c2f6e76c9d SAMEA3233097 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913163/ERR913163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913163/ERR913163_2.fastq.gz 5212776 WGS GPS_GM_1241-sc-2205853 RANDOM 172405522;179603502 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913163/ERR913163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913163/ERR913163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913163/15873_2#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913163/15873_2#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913163/ERR913163_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913163/ERR913163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913163/15873_2#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913163/15873_2#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286487213;8225 ERS654290 ERX992287 GENOMIC 13301873 521277600 2015-06-17 SC_RUN_15873_2#11 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913163/15873_2#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913163/15873_2#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#11 ERR1947608 SC_EXP_21946_6#88 445 e705fad2c0eef7612170df46cd447251;6bc3865fc961f0bb48641306c2430ca8 1313 600a1817b009f0fdaa91d2f1d66e3051;42d2bd0116387b7872a6872e648599e9 SAMEA17663668 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947608/ERR1947608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947608/ERR1947608_2.fastq.gz 2056354 WGS 3dd2eaa0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 52549695;73149337 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947608/ERR1947608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947608/ERR1947608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947608/21946_6#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947608/21946_6#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947608/ERR1947608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947608/ERR1947608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947608/21946_6#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947608/21946_6#88.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 90648124;3520 ERS1461666 ERX2013395 GENOMIC 18471712 310509454 2017-04-25 SC_RUN_21946_6#88 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947608/21946_6#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947608/21946_6#88.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947595 SC_EXP_21946_6#75 458 84ec2dd2296fa89b9e7109461d34b254;f6badf7a6d17c2e9bd2dc8223a2d9edc 1313 c09966de38878cb7c1e596a74c0287e4;4d6cd08a15a60214b1c22949a91a65e0 SAMEA4561625 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947595/ERR1947595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947595/ERR1947595_2.fastq.gz 2434696 WGS 3811d540-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 61640428;85887180 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947595/ERR1947595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947595/ERR1947595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947595/21946_6#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947595/21946_6#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947595/ERR1947595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947595/ERR1947595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947595/21946_6#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947595/21946_6#75.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 107374729;4122 ERS1460804 ERX2013382 GENOMIC 18471651 367639096 2017-04-25 SC_RUN_21946_6#75 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947595/21946_6#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947595/21946_6#75.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR979924 SC_EXP_16288_3#51 234 01b62b003e29e6d19fe833a12f03103b;85d6d25b854ea44afbbdc08b0e206651 1313 6187376b5cc8a1c87de7aa1fb8dae7cc;f665321a68ee84538cce2f6dd9e3a3f4 SAMEA3232394 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979924/ERR979924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979924/ERR979924_2.fastq.gz 4483276 WGS GPS_NP_0072-sc-2205312 RANDOM 145374122;142674747 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979924/ERR979924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979924/ERR979924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979924/16288_3#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979924/16288_3#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979924/ERR979924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979924/ERR979924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979924/16288_3#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979924/16288_3#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 231336259;7265 ERS653605 ERX1056796 GENOMIC 13296166 448327600 2015-08-12 SC_RUN_16288_3#51 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979924/16288_3#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979924/16288_3#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#51 ERR1947196 SC_EXP_21903_8#42 445 6b19f203360dc1607ce355183742715e;cd198583a4f9141306c7c0dc584c59fc 1313 cddbe7816263bf24f98b1ca8b9d1b46d;18ea379bca545ea1c936b69100e89f5e SAMEA4561222 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947196/ERR1947196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947196/ERR1947196_2.fastq.gz 2299884 WGS 13f21760-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 56725248;84550886 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947196/ERR1947196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947196/ERR1947196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947196/21903_8#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947196/21903_8#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947196/ERR1947196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947196/ERR1947196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947196/21903_8#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947196/21903_8#42.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103359597;3899 ERS1460401 ERX2012983 GENOMIC 18430206 347282484 2017-04-25 SC_RUN_21903_8#42 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947196/21903_8#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947196/21903_8#42.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR913237 SC_EXP_15873_3#3 216 727f34c19f03f6def5bee72db25dd0a6;89380270cd028b2474dbb2ee2c730273 1313 bbcc34c8188aee83a5644de8119fe303;7a82a931fcab1ff74506bd3ce8477b00 SAMEA3233187 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913237/ERR913237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913237/ERR913237_2.fastq.gz 6599226 WGS GPS_GM_1330-sc-2205943 RANDOM 207655560;217185385 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913237/ERR913237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913237/ERR913237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913237/15873_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913237/15873_3#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913237/ERR913237_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913237/ERR913237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913237/15873_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913237/15873_3#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 346456960;10522 ERS654380 ERX992361 GENOMIC 13308164 659922600 2015-06-17 SC_RUN_15873_3#3 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913237/15873_3#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913237/15873_3#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#3 ERR913546 SC_EXP_15874_1#70 217 6f64830e28dedb235ab008b67e4d852d;8410bef1f263e4707b23edab6a3d2bbf 1313 5f96c958d258b6614a477e3d198130d3;891f9c02af4590d8263d190f9ad96ed3 SAMEA3207084 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913546/ERR913546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913546/ERR913546_2.fastq.gz 4987576 WGS GPS_ZA_carriage_SP449-sc-2192021 RANDOM 145151751;153835986 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913546/ERR913546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913546/ERR913546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913546/15874_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913546/15874_1#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913546/ERR913546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913546/ERR913546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913546/15874_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913546/15874_1#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240305602;7984 ERS639094 ERX992670 GENOMIC 13242117 498757600 2015-06-17 SC_RUN_15874_1#70 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913546/15874_1#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913546/15874_1#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#70 ERR662436 SC_EXP_13710_2#48 196 55bbff7feb777c77479ac53b760c1dcb;962f31bbc79f6d85aa4ad6ea4c2b3b66 1313 cf81803cc3aabdd6df5d5ec9e0ef9a72;3e67d55803bee2491df5afd2e7e5b794 SAMEA2521727 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662436/ERR662436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662436/ERR662436_2.fastq.gz 6298778 WGS 2012215020-sc-1947020 RANDOM 210012222;220340989 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662436/ERR662436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662436/ERR662436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662436/13710_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662436/13710_2#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662436/ERR662436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662436/ERR662436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662436/13710_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662436/13710_2#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 360061244;10272 ERS455267 ERX618712 GENOMIC 11100528 629877800 2014-10-28 SC_RUN_13710_2#48 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662436/13710_2#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662436/13710_2#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#48 ERR742561 SC_EXP_14673_3#60 214 11367bb733de8ebc2b87d523f00734c4;1135ead727a39a6a3d6120e0d4df5910 1313 1b48ae1dd543199e1639ece8e8d508f5;30926e4456456fd787ff7de32faee56e SAMEA2796658 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742561/ERR742561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742561/ERR742561_2.fastq.gz 4770246 WGS GPS_US_5558_03-sc-2138639 RANDOM 152679569;157808212 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742561/ERR742561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742561/ERR742561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742561/14673_3#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742561/14673_3#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742561/ERR742561_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742561/ERR742561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742561/14673_3#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742561/14673_3#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251394914;7696 ERS558269 ERX686244 GENOMIC 12061915 477024600 2015-01-27 SC_RUN_14673_3#60 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742561/14673_3#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742561/14673_3#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#60 ERR736909 SC_EXP_14555_4#12 208 04944000d46862f3f71236dbc545e99a;e16e99968f1191d67dd300668ff8a40c 1313 55ea9a31bd11e3b0602a2bc94337afb3;2a114989cb442554f5da53e90f809b79 SAMEA2658938 2015-01-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736909/ERR736909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736909/ERR736909_2.fastq.gz 4527890 WGS GPS_ZA_2054-sc-2021576 RANDOM 136662388;141554966 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736909/ERR736909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR736/ERR736909/ERR736909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736909/14555_4#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736909/14555_4#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR736/ERR736909/ERR736909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR736/ERR736909/ERR736909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736909/14555_4#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR736/ERR736909/14555_4#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226975706;7401 ERS508966 ERX680600 GENOMIC 11814937 452789000 2015-01-20 SC_RUN_14555_4#12 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR736/ERR736909/14555_4#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR736/ERR736909/14555_4#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA402059 14555_4#12 ERR554876 SC_EXP_12673_6#45 221 b8f19c8ddae3ecb9f5b7cb96bc163825;598bb4d89d2988415b0a352c342b8255 1313 47409fa45633a6ec01d43bc2c47a6b82;64da6e031ab43b72c89068be0b542976 SAMEA2382590 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554876/ERR554876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554876/ERR554876_2.fastq.gz 4845092 WGS 2120363-sc-1869835 RANDOM 159627750;180761711 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554876/ERR554876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554876/ERR554876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554876/12673_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554876/12673_6#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554876/ERR554876_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554876/ERR554876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554876/12673_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554876/12673_6#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 283464990;8039 ERS408915 ERX513945 GENOMIC 9798950 484509200 2014-07-02 SC_RUN_12673_6#45 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554876/12673_6#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554876/12673_6#45.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#45 ERR505530 SC_EXP_12291_1#73 213 ca3b47dc09e9284541805c8b32ae722e;2d4001eeb65b01c7c7738dd79fbb7dbc 1313 7c562088ecb4281f6cd42746f226eaff;29c8e90312a4e24f40144db65bdaa756 SAMEA2335732 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505530/ERR505530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505530/ERR505530_2.fastq.gz 4629304 WGS PATH2593-sc-1810657 RANDOM 145590341;151968962 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505530/ERR505530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505530/ERR505530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505530/12291_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505530/12291_1#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505530/ERR505530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505530/ERR505530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505530/12291_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505530/12291_1#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243066176;7509 ERS393926 ERX470887 GENOMIC 9441105 462930400 2014-05-19 SC_RUN_12291_1#73 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505530/12291_1#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505530/12291_1#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#73 ERR461814 SC_EXP_11861_5#77 221 b0986ea975b3a22fa45f6d376508010e;8ada4540bbdd1704191e238c748d30a0 1313 4a80640c841856e1575ac93346f2e8c8;003a87c06fc639491f8ab45efee5badd SAMEA2239302 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461814/ERR461814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461814/ERR461814_2.fastq.gz 4156642 WGS 2020773-sc-2013-11-05T12:11:24Z-1750675 RANDOM 129121881;134472977 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461814/ERR461814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461814/ERR461814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461814/11861_5#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461814/11861_5#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461814/ERR461814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461814/ERR461814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461814/11861_5#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461814/11861_5#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 214947142;6800 ERS368114 ERX428155 GENOMIC 9017872 415664200 2014-03-18 SC_RUN_11861_5#77 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461814/11861_5#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461814/11861_5#77.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461848 SC_EXP_11893_1#22 234 8036b9eefcac2e6d07131fa38a9ba852;5687290b3f89b609b1b0cb3f128cb6e8 1313 8cca61f8b80b74b6db974fbb45ce6be4;7a3def7e62d82c2d9c9949d695e99e19 SAMEA2238779 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461848/ERR461848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461848/ERR461848_2.fastq.gz 5849304 WGS 2102096-sc-2013-11-05T12:02:18Z-1750142 RANDOM 195742162;202752135 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461848/ERR461848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461848/ERR461848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461848/11893_1#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461848/11893_1#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461848/ERR461848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461848/ERR461848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461848/11893_1#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461848/11893_1#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 328465953;9657 ERS367591 ERX428189 GENOMIC 9028186 584930400 2014-03-18 SC_RUN_11893_1#22 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461848/11893_1#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461848/11893_1#22.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#22 ERR461886 SC_EXP_11893_1#62 234 42528343290e3a503143a1488adb5b8a;8a05c1ba99833c428b655af2a3a14956 1313 f6d1b8f1a9daeae57d25cd4c7e2a76b7;601cc40eecdb13e27c2f7cd5416eafd7 SAMEA2238820 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461886/ERR461886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461886/ERR461886_2.fastq.gz 4293186 WGS 2103421-sc-2013-11-05T12:02:58Z-1750183 RANDOM 144950042;150645348 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461886/ERR461886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461886/ERR461886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461886/11893_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461886/11893_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461886/ERR461886_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461886/ERR461886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461886/11893_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461886/11893_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 242982024;7067 ERS367632 ERX428227 GENOMIC 9028191 429318600 2014-03-18 SC_RUN_11893_1#62 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461886/11893_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461886/11893_1#62.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#62 ERR461639 SC_EXP_11861_3#88 226 bdb5f59e38dc8b11710457b553f9304d;ce6cf2aac879d3abeb1b1e6b450e93db 1313 a1e15aeadf7a3b034d4a27517923ce3d;1f3d1b53312f38f2524a2dff2da7e4aa SAMEA2238941 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461639/ERR461639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461639/ERR461639_2.fastq.gz 4386284 WGS 2111417-sc-2013-11-05T12:05:15Z-1750305 RANDOM 143548308;150494306 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461639/ERR461639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461639/ERR461639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461639/11861_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461639/11861_3#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461639/ERR461639_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461639/ERR461639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461639/11861_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461639/11861_3#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 240554487;7222 ERS367753 ERX427980 GENOMIC 9016300 438628400 2014-03-18 SC_RUN_11861_3#88 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461639/11861_3#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461639/11861_3#88.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#88 ERR461464 SC_EXP_11861_1#91 225 43c680b4c6e3f99bee8fa0866dab55d7;ac35aaf9ea812fd804b33dbe7c361205 1313 4a085c1b6823ec59763c54a00c9be3ef;017524ad5e9102814615b7dc8ed5861d SAMEA2238657 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461464/ERR461464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461464/ERR461464_2.fastq.gz 5328180 WGS 2091165-sc-2013-11-05T12:00:11Z-1750019 RANDOM 168691439;177891241 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461464/ERR461464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461464/ERR461464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461464/11861_1#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461464/11861_1#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461464/ERR461464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461464/ERR461464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461464/11861_1#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461464/11861_1#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 283446052;8815 ERS367469 ERX427805 GENOMIC 9016143 532818000 2014-03-18 SC_RUN_11861_1#91 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461464/11861_1#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461464/11861_1#91.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#91 ERR461664 SC_EXP_11861_4#18 224 2bdff4286ada13a451f1c555cec695e5;3b37bfb4d0964c160762e62804de93b3 1313 fb0ae9561591e106a0df38ea3824b7db;d4b2488079c94aae7b55ebb52b446900 SAMEA2238966 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461664/ERR461664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461664/ERR461664_2.fastq.gz 3824748 WGS 2120452-sc-2013-11-05T12:05:43Z-1750331 RANDOM 120814836;126828196 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461664/ERR461664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461664/ERR461664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461664/11861_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461664/11861_4#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461664/ERR461664_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461664/ERR461664_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461664/11861_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461664/11861_4#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 202177506;6273 ERS367778 ERX428005 GENOMIC 9016367 382474800 2014-03-18 SC_RUN_11861_4#18 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461664/11861_4#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461664/11861_4#18.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#18 ERR461212 SC_EXP_11860_7#21 206 eec5765a044813fd18d618cce044bc5a;87a5b2248b7747a8d2f21c2659701c0a 1313 f39b58744f3f3dee5d62675146ee1559;aafd3ed11830775542ec5171b6b0bc68 SAMEA2239062 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461212/ERR461212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461212/ERR461212_2.fastq.gz 3913102 WGS 991098-sc-2013-11-05T12:07:17Z-1750431 RANDOM 125849799;132229240 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461212/ERR461212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461212/ERR461212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461212/11860_7#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461212/11860_7#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461212/ERR461212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461212/ERR461212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461212/11860_7#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461212/11860_7#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 211623448;6488 ERS367874 ERX427553 GENOMIC 9014926 391310200 2014-03-18 SC_RUN_11860_7#21 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461212/11860_7#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461212/11860_7#21.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#21 ERR461005 SC_EXP_11860_4#95 217 6d2ba23f2e7ab19131b03a405a03a9ac;7d5c7ebfb66342268845aa81d2667026 1313 21a5a7de3f149a54aa4b283489a7209d;4ad19e9fef9abe7a178d3541f016f8e9 SAMEA2238369 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461005/ERR461005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461005/ERR461005_2.fastq.gz 4527366 WGS 2070340-sc-2013-11-05T11:55:18Z-1749727 RANDOM 144299387;151637745 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461005/ERR461005_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461005/ERR461005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461005/11860_4#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461005/11860_4#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461005/ERR461005_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461005/ERR461005_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461005/11860_4#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461005/11860_4#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 242829524;7469 ERS367181 ERX427346 GENOMIC 9012519 452736600 2014-03-18 SC_RUN_11860_4#95 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461005/11860_4#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461005/11860_4#95.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#95 ERR311089 SC_EXP_9716_7#26 219 e06e340ea7a79e14930c8f7c5d7667db 1313 d08c8b9c4322d65db9bc2f5bc4df3625;9e351230d791a480b6fff8e369f1b6d7 SAMEA2052495 2013-07-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311089/ERR311089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311089/ERR311089_2.fastq.gz 1895549 WGS 1889-sc-2013-02-18T14:48:53Z-1562104 RANDOM 126734082;134918118 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311089/ERR311089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311089/ERR311089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR311/ERR311089/9716_7#26.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR311/ERR311089/ERR311089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR311/ERR311089/ERR311089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR311/ERR311089/9716_7#26.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 354511205 ERS215317 ERX284370 GENOMIC 7155466 379109800 2013-07-08 SC_RUN_9716_7#26 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR311/ERR311089/9716_7#26.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA237526 9716_7#26 ERR273523 SC_EXP_6730_4#20 231 313d594869be78af91b6a3e6e5da37c0 1313 6d4dbf455dd41cbc6f1e8a1c1fc0d51c;61e1fc44f9156c048c0068e3df1aedc8 SAMEA1024904 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273523/ERR273523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273523/ERR273523_2.fastq.gz 2302588 WGS SMRU644-sc-2011-01-27-1060833 RANDOM 103715832;106601817 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273523/ERR273523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273523/ERR273523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273523/6730_4#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273523/ERR273523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273523/ERR273523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273523/6730_4#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 311521201 ERS020154 ERX247799 GENOMIC 3100122 345388200 2013-05-13 SC_RUN_6730_4#20 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273523/6730_4#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR129164 SC_EXP_7622_4#44 221 9d6b619ec0a0568b208638d4d1bd8e91 1313 c7ed43387439cc7422f6c1382c24fdc5;c052c815423f71a709943c961d9a7319 SAMEA1463230 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129164/ERR129164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129164/ERR129164_2.fastq.gz 2870395 WGS MD5021-sc-2011-11-08T10:08:03Z-1298423 RANDOM 308728961;314879501 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129164/ERR129164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129164/ERR129164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129164/7622_4#44.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129164/ERR129164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129164/ERR129164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129164/7622_4#44.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 604643028 ERS070055 ERX105305 GENOMIC 4336573 574079000 2012-05-28 SC_RUN_7622_4#44 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129164/7622_4#44.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR054339 SC_EXP_6736_5#22 250 fa67e23c7f1721d0121d4ec1db30fada 1313 9b9a49bbd4f664e75141c7997359080c;c970d2605954d5b0ce6c719935ac2351 SAMEA1025331 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054339/ERR054339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054339/ERR054339_2.fastq.gz 6999759 WGS SMRU1246-sc-2011-01-27-1061459 RANDOM 376154002;395000419 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054339/ERR054339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054339/ERR054339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054339/6736_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054339/ERR054339_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054339/ERR054339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054339/6736_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 961417154 ERS020756 ERX031385 GENOMIC 3308093 1049963850 2011-11-15 SC_RUN_6736_5#22 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054339/6736_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054257 SC_EXP_6710_7#12 233 8b2a3d142343cbeb89dae996807d0364 1313 fc156508e2344ae59a30c0599fc55f8b;4167b68a3f9f0a8e6198b9781e4f0176 SAMEA1025234 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054257/ERR054257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054257/ERR054257_2.fastq.gz 12430452 WGS SMRU1380-sc-2011-01-27-1061593 RANDOM 716560765;748116846 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054257/ERR054257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054257/ERR054257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054257/6710_7#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054257/ERR054257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054257/ERR054257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054257/6710_7#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1792032876 ERS020890 ERX031303 GENOMIC 3348838 1864567800 2011-11-15 SC_RUN_6710_7#12 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054257/6710_7#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051507 SC_EXP_6730_7#1 229 f5e45e56c7471b31fcc64c2fd1cb39de 1313 0fe19688a19be0d92b2c65dfd99e1134;ea049b795b4f3490c00567eb3ebf3814 SAMEA1025035 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051507/ERR051507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051507/ERR051507_2.fastq.gz 9801148 WGS SMRU697-sc-2011-01-27-1060886 RANDOM 531045973;545634737 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051507/ERR051507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051507/ERR051507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051507/6730_7#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051507/ERR051507_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051507/ERR051507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051507/6730_7#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1334267179 ERS020207 ERX028555 GENOMIC 3100199 1470172200 2011-11-02 SC_RUN_6730_7#1 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051507/6730_7#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR069593 SC_EXP_7011_3#7 205 93280df758a487a4c70b9065fa186a1d 1313 08cd3f0dc68d64c5f5b501f891435218;92f7f7b5b838b48c422a560636e1c7c0 SAMEA1028673 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069593/ERR069593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069593/ERR069593_2.fastq.gz 4008062 WGS SMRU2743-sc-2011-01-27-1062956 RANDOM 239983737;247731944 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069593/ERR069593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069593/ERR069593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069593/7011_3#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069593/ERR069593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069593/ERR069593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069593/7011_3#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 620356361 ERS022253 ERX047446 GENOMIC 3758413 601209300 2012-01-19 SC_RUN_7011_3#7 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069593/7011_3#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR067772 SC_EXP_6972_2#5 231 3de73aa3a7e6d0f1c7949d0ba2d39e98 1313 79467ea7308f0028fe270c323412075e;2c52a8e1f195171a2a35da2b3ecaf179 SAMEA1029120 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067772/ERR067772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067772/ERR067772_2.fastq.gz 4092760 WGS SMRU2549-sc-2011-01-27-1062762 RANDOM 252277205;262047415 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067772/ERR067772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067772/ERR067772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067772/6972_2#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067772/ERR067772_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067772/ERR067772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067772/6972_2#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 664426104 ERS022059 ERX045635 GENOMIC 3686220 613914000 2012-01-16 SC_RUN_6972_2#5 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067772/6972_2#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069590 SC_EXP_7011_3#4 205 d61985c186f33059846166ce2f0c2cdd 1313 26f5542d287e476f29e4d32c62a790d0;fb7dca3001f1c2066fa82c79460592ab SAMEA1029110 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069590/ERR069590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069590/ERR069590_2.fastq.gz 4253776 WGS SMRU2740-sc-2011-01-27-1062953 RANDOM 258862643;266821638 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069590/ERR069590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069590/ERR069590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069590/7011_3#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069590/ERR069590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069590/ERR069590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069590/7011_3#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 665670900 ERS022250 ERX047443 GENOMIC 3758410 638066400 2012-01-19 SC_RUN_7011_3#4 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069590/7011_3#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR066188 SC_EXP_6938_5#13 230 3763fc2ed35382aefd9f708bb9437b3c 1313 bc8c3605a8d86f0ffaf3d3fddd4f3ecf;63c369d361f91e45b36036643fa06451 SAMEA1028785 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066188/ERR066188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066188/ERR066188_2.fastq.gz 3030466 WGS SMRU2653-sc-2011-01-27-1062866 RANDOM 210805344;216006480 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066188/ERR066188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066188/ERR066188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066188/6938_5#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066188/ERR066188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066188/ERR066188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066188/6938_5#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 538684533 ERS022163 ERX044051 GENOMIC 3651673 454569900 2012-03-19 SC_RUN_6938_5#13 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066188/6938_5#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057754 SC_EXP_6791_6#20 233 ae3ecc6bc2f549809b59e21725d1fc56 1313 22dfd76ad09f75a920e68bbccfeb99d0;90b46ae6390c3b28652573a5afe251ca SAMEA1024904 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057754/ERR057754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057754/ERR057754_2.fastq.gz 3318079 WGS SMRU644-sc-2011-01-27-1060833 RANDOM 200447852;198181485 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057754/ERR057754_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057754/ERR057754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057754/6791_6#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057754/ERR057754_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057754/ERR057754_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057754/6791_6#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 519236315 ERS020154 ERX035600 GENOMIC 3100122 497711850 2011-12-05 SC_RUN_6791_6#20 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057754/6791_6#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056728 SC_EXP_6775_2#22 201 702a2fe687e15259d4ce661ad8244b71 1313 967c2ec1a75bd0e686fbfd79eafc64f5;7084507ce1f82750f06427845a3d982f SAMEA1025051 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056728/ERR056728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056728/ERR056728_2.fastq.gz 4529323 WGS SMRU862-sc-2011-01-27-1061051 RANDOM 279725540;294748421 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056728/ERR056728_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056728/ERR056728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056728/6775_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056728/ERR056728_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056728/ERR056728_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056728/6775_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 717827646 ERS020372 ERX034572 GENOMIC 3152383 679398450 2011-11-29 SC_RUN_6775_2#22 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056728/6775_2#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR084208 SC_EXP_7038_6#6 252 4c583a19398448c1df4077a9d6c1a35f 1313 50193c08d8d0286b3303caf9b850d2a7;585b947a1cdc0933198dc6e0628efa31 SAMEA1029403 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084208/ERR084208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084208/ERR084208_2.fastq.gz 4674535 WGS SMRU2982-sc-2011-01-27-1063195 RANDOM 302524859;305172534 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084208/ERR084208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084208/ERR084208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084208/7038_6#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084208/ERR084208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084208/ERR084208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084208/7038_6#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1149001165 ERS022492 ERX061974 GENOMIC 3811686 701180250 2012-02-07 SC_RUN_7038_6#6 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084208/7038_6#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR084163 SC_EXP_7038_4#9 250 80e36bc4fdad2f12f08c6dc43e17464c 1313 f31251eda44ef0c48e5ae1fdb9706df1;7477048d999febbbe4aabc403c139b4c SAMEA1029276 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084163/ERR084163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084163/ERR084163_2.fastq.gz 4052524 WGS SMRU2937-sc-2011-01-27-1063150 RANDOM 259405331;261682632 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084163/ERR084163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084163/ERR084163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084163/7038_4#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084163/ERR084163_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084163/ERR084163_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084163/7038_4#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 998368929 ERS022447 ERX061929 GENOMIC 3808769 607878600 2012-02-07 SC_RUN_7038_4#9 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084163/7038_4#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR072219 SC_EXP_7054_5#22 231 33cb02f18ae0a9e5a68b54ed91e7fa3c 1313 8a3e045abeb4c42080504eb1465e7a93;3fd911f56cc129a5c5121f7692ec01c2 SAMEA1029198 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072219/ERR072219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072219/ERR072219_2.fastq.gz 4853746 WGS SMRU3070-sc-2011-01-27-1063283 RANDOM 295471053;310666163 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072219/ERR072219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072219/ERR072219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072219/7054_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072219/ERR072219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072219/ERR072219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072219/7054_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 768222267 ERS022580 ERX049985 GENOMIC 3888014 728061900 2012-01-31 SC_RUN_7054_5#22 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072219/7054_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR072200 SC_EXP_7054_5#3 231 b9f4c35e307d40510077c82fee41cd32 1313 a3a0a28344f82241d1054c01ed42eed6;1baf93e7023c47d8b674dc8dd9da2a73 SAMEA1029289 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072200/ERR072200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072200/ERR072200_2.fastq.gz 4642636 WGS SMRU3051-sc-2011-01-27-1063264 RANDOM 280956597;296308273 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072200/ERR072200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072200/ERR072200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072200/7054_5#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072200/ERR072200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072200/ERR072200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072200/7054_5#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 730731412 ERS022561 ERX049966 GENOMIC 3887995 696395400 2012-01-31 SC_RUN_7054_5#3 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072200/7054_5#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR052630 SC_EXP_6714_8#5 246 97f18c097814cbe0977347204c45e95a 1313 767b26a24e7dfd7325ae2d8ff4f53f5d;0e5b7d06371f552fc8bca3e4739a79c8 SAMEA1023754 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052630/ERR052630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052630/ERR052630_2.fastq.gz 2845197 WGS SMRU557-sc-2011-01-27-1060746 RANDOM 148868772;156899777 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052630/ERR052630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052630/ERR052630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052630/6714_8#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052630/ERR052630_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052630/ERR052630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052630/6714_8#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 407352908 ERS019715 ERX029678 GENOMIC 3100035 426779550 2011-11-07 SC_RUN_6714_8#5 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052630/6714_8#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR045427 SC_EXP_6486_8#12 229 35bd2dec9f319e22025b674b917af279 1313 8d61d069cdeb909c3f0445c45ed7bcab;0447ffcb056c10ec2bad805ea8f73a5b SAMEA1026587 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045427/ERR045427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045427/ERR045427_2.fastq.gz 9421892 WGS UoS5149-sc-2011-03-11-1098971 RANDOM 488435537;492996835 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045427/ERR045427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045427/ERR045427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045427/6486_8#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045427/ERR045427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045427/ERR045427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045427/6486_8#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1223813160 ERS025161 ERX022489 GENOMIC 2745031 1413283800 2011-09-14 SC_RUN_6486_8#12 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045427/6486_8#12.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_8#12 ERR316575 SC_EXP_9789_2#4 213 c8c235ac344e8ecf1096629d23f73eca 1313 4ed9937f87bda304f6a700cdca34592c;aa24a902a0fe0525851abc5d80e28b7a SAMEA2050325 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316575/ERR316575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316575/ERR316575_2.fastq.gz 2846115 WGS D30686-sc-2013-02-18T14:41:19Z-1561693 RANDOM 186394973;204807285 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316575/ERR316575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316575/ERR316575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316575/9789_2#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316575/ERR316575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316575/ERR316575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316575/9789_2#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 529972853 ERS214912 ERX289723 GENOMIC 7066772 569223000 2013-07-22 SC_RUN_9789_2#4 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316575/9789_2#4.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#4 ERR316848 SC_EXP_9789_5#4 239 2801618b62d173480f34b64419d66fe3 1313 bc508d86b2f2c5810520a45dc618695a;198ef0f691b1025da72a4cdc4e5dafb7 SAMEA2050709 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316848/ERR316848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316848/ERR316848_2.fastq.gz 2855770 WGS 5471-sc-2013-02-18T14:46:42Z-1561985 RANDOM 180034826;195080696 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316848/ERR316848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316848/ERR316848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316848/9789_5#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316848/ERR316848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316848/ERR316848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316848/9789_5#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 512911116 ERS215199 ERX289996 GENOMIC 7125955 571154000 2013-07-22 SC_RUN_9789_5#4 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316848/9789_5#4.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#4 ERR316704 SC_EXP_9789_3#42 207 d3af852ab6e9050b14f17b837e2c7b03 1313 bb829da696473f48adbbe85859c6903f;681ac3b25f011a2fa06327c44aac2b0a SAMEA2050508 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316704/ERR316704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316704/ERR316704_2.fastq.gz 5725277 WGS 343-sc-2013-02-18T14:43:51Z-1561834 RANDOM 351644831;383745492 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316704/ERR316704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316704/ERR316704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316704/9789_3#42.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316704/ERR316704_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316704/ERR316704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316704/9789_3#42.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 995525606 ERS215050 ERX289852 GENOMIC 7066850 1145055400 2013-07-22 SC_RUN_9789_3#42 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316704/9789_3#42.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_3#42 ERR316709 SC_EXP_9789_3#47 207 b3eb0b497386ec168da151494e009570 1313 ec422eac5300498263167efadc017fe4;a37ed814ca3350365a8a26d1eac765e4 SAMEA2051771 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316709/ERR316709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316709/ERR316709_2.fastq.gz 3228397 WGS 407-sc-2013-02-18T14:43:56Z-1561839 RANDOM 201477502;221105463 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316709/ERR316709_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316709/ERR316709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316709/9789_3#47.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316709/ERR316709_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316709/ERR316709_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316709/9789_3#47.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 572678084 ERS215055 ERX289857 GENOMIC 7066910 645679400 2013-07-22 SC_RUN_9789_3#47 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316709/9789_3#47.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_3#47 ERR2091294 SC_EXP_22841_4#185 442 21671051aada3c1e92c5a13de4a4b003;d42affa06c70c004b5702c8aacaff7f7 1313 68dd47b3c9939b17141825968756040a;2a87831f2874195588acb699c1b580e9 SAMEA104035493 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091294/ERR2091294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091294/ERR2091294_2.fastq.gz 3500142 WGS a2bc1590-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 71644418;78010443 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091294/ERR2091294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091294/ERR2091294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091294/22841_4#185.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091294/22841_4#185.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091294/ERR2091294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091294/ERR2091294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091294/22841_4#185.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091294/22841_4#185.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 106516566;5732 ERS1699386 ERX2148088 GENOMIC DN477153Q:D12 437517750 2017-08-08 SC_RUN_22841_4#185 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091294/22841_4#185.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091294/22841_4#185.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#185 ERR2091180 SC_EXP_22841_4#71 434 47c6de6d7946b09a65f91eb88419c672;7805a35e2ae97e9d60ee53cff394a1e8 1313 3239a401401cb0c2b832cb8244889e48;32ad16b265849c3c18fb3bf994d7c308 SAMEA104035377 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091180/ERR2091180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091180/ERR2091180_2.fastq.gz 2649292 WGS 99c5c5d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55628057;57308883 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091180/ERR2091180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091180/ERR2091180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091180/22841_4#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091180/22841_4#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091180/ERR2091180_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091180/ERR2091180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091180/22841_4#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091180/22841_4#71.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79592675;4406 ERS1699270 ERX2147974 GENOMIC DN477152P:G9 331161500 2017-08-08 SC_RUN_22841_4#71 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091180/22841_4#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091180/22841_4#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#71 ERR2091290 SC_EXP_22841_4#181 429 ab34c758c6ea98e1b1faaadbe3e9b287;f59c62e1a6db12c798c33e802236e7a8 1313 2a667bc55e93f2196202edf01827ca48;d1f290a372c61841695fd4847dca6bef SAMEA104035488 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091290/ERR2091290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091290/ERR2091290_2.fastq.gz 2849548 WGS a28463c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 59162824;65254808 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091290/ERR2091290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091290/ERR2091290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091290/22841_4#181.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091290/22841_4#181.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091290/ERR2091290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091290/ERR2091290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091290/22841_4#181.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091290/22841_4#181.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88024452;4670 ERS1699381 ERX2148084 GENOMIC DN477153Q:G11 356193500 2017-08-08 SC_RUN_22841_4#181 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091290/22841_4#181.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091290/22841_4#181.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#181 ERR2091177 SC_EXP_22841_4#68 413 1666b6b20581cf842d7fb9a2a3d096a7;ccf0efc6e5309e27538ee7f74afd6021 1313 f20c9d80e18fd4f983121a04fe3c0227;1f367ac5c1f2a92ff253ae2d00097f58 SAMEA104035374 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091177/ERR2091177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091177/ERR2091177_2.fastq.gz 2863652 WGS 99a7dd90-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 59068557;61244838 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091177/ERR2091177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091177/ERR2091177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091177/22841_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091177/22841_4#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2091177/ERR2091177_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2091177/ERR2091177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091177/22841_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091177/22841_4#68.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85313544;4739 ERS1699267 ERX2147971 GENOMIC DN477152P:D9 357956500 2017-08-08 SC_RUN_22841_4#68 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091177/22841_4#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091177/22841_4#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#68 ERR2091154 SC_EXP_22841_4#45 431 6a72b750dc95749414003293b8a772dc;e592741a526438fca3ec6b667d9ce682 1313 197d9d293cb82796385fb3a6c713e699;0ae58dd596be08cc758f68ebb2645097 SAMEA104035351 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091154/ERR2091154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091154/ERR2091154_2.fastq.gz 2635642 WGS 98af9ae0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55019313;57169415 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091154/ERR2091154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2091154/ERR2091154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091154/22841_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091154/22841_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091154/ERR2091154_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2091154/ERR2091154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091154/22841_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091154/22841_4#45.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78973549;4359 ERS1699244 ERX2147948 GENOMIC DN477152P:E6 329455250 2017-08-08 SC_RUN_22841_4#45 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091154/22841_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091154/22841_4#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#45 ERR2090849 SC_EXP_22841_2#118 387 cb5a87e148fdd1df28243dcb309c42d5;789d5539e6e1039ada2ace017b5afad0 1313 f7dcca6acee064f21f8fb2ed174c44cb;dd2d363e787c79da57797d85d8f70e72 SAMEA104035698 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090849/ERR2090849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090849/ERR2090849_2.fastq.gz 2692050 WGS b8bfc3f0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60038444;64994993 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090849/ERR2090849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090849/ERR2090849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090849/22841_2#118.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090849/22841_2#118.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090849/ERR2090849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090849/ERR2090849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090849/22841_2#118.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090849/22841_2#118.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88802189;4428 ERS1699591 ERX2147643 GENOMIC DN483654V:G3 336506250 2017-08-08 SC_RUN_22841_2#118 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090849/22841_2#118.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090849/22841_2#118.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#118 ERR2091136 SC_EXP_22841_4#27 450 97bc8d5c977119083f47d54fe0d0f9eb;ca01424a707449a670d9a5d155ec5391 1313 a346a7a93244233abbb20ce5ff76f82e;854e3879af28eeacc4b04f95d54943ce SAMEA104035333 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091136/ERR2091136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091136/ERR2091136_2.fastq.gz 2422468 WGS 98081040-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51412452;53423766 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091136/ERR2091136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091136/ERR2091136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091136/22841_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091136/22841_4#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091136/ERR2091136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091136/ERR2091136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091136/22841_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091136/22841_4#27.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73822890;4039 ERS1699226 ERX2147930 GENOMIC DN477152P:C4 302808500 2017-08-08 SC_RUN_22841_4#27 111 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091136/22841_4#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091136/22841_4#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#27 ERR2090989 SC_EXP_22841_3#68 393 65ee5aec524de793a17f7fefa60fbd75;3d17efd58d165ca15e2027bae479fdd1 1313 70c1fb170b87c7a198e1185c0a002325;63f8ad4e62d34993100ab0b2833009b6 SAMEA104035843 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090989/ERR2090989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090989/ERR2090989_2.fastq.gz 2954522 WGS c2a3cf10-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 64816679;67338204 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090989/ERR2090989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090989/ERR2090989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090989/22841_3#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090989/22841_3#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090989/ERR2090989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090989/ERR2090989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090989/22841_3#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090989/22841_3#68.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93780414;4873 ERS1699736 ERX2147783 GENOMIC DN483669F:D9 369315250 2017-08-08 SC_RUN_22841_3#68 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090989/22841_3#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090989/22841_3#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#68 ERR2090705 SC_EXP_22841_1#164 431 1f46654702a075a3dd7d79baa225d14a;6912822d6579d19cd33cee655e2c7408 1313 c4f6150aba4f035845046554ac8a49f0;08e9c1d628673534dd34135bb5303808 SAMEA104035550 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090705/ERR2090705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090705/ERR2090705_2.fastq.gz 2794324 WGS a95a6b90-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 53205161;59322552 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090705/ERR2090705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090705/ERR2090705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090705/22841_1#164.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090705/22841_1#164.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090705/ERR2090705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090705/ERR2090705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090705/22841_1#164.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090705/22841_1#164.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79267218;4608 ERS1699443 ERX2147499 GENOMIC DN477156T:E9 349290500 2017-08-08 SC_RUN_22841_1#164 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090705/22841_1#164.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090705/22841_1#164.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#164 ERR2090822 SC_EXP_22841_2#91 369 39680be67ab9b0b924a6720a9a86c2f3;760622e7ce92ab5ed4107cce181356c4 1313 c3998525860353c01322e22412b69d1c;42edd9e30ce54d532f57155b2e84d802 SAMEA104035670 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090822/ERR2090822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090822/ERR2090822_2.fastq.gz 3238060 WGS b3357600-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 72278754;75492673 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090822/ERR2090822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090822/ERR2090822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090822/22841_2#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090822/22841_2#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2090822/ERR2090822_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2090822/ERR2090822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090822/22841_2#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090822/22841_2#91.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105369172;5287 ERS1699563 ERX2147616 GENOMIC DN483653U:C12 404757500 2017-08-08 SC_RUN_22841_2#91 98 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090822/22841_2#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090822/22841_2#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#91 ERR2090722 SC_EXP_22841_1#181 429 65f2bb83319f8c75c70753dc30e483c0;d43669c26bd48170c8006d2c5fada82e 1313 db3edd274eca4ecec4d14211bdbce7f4;7dd12c7f233584d26ce6e1c2dc0f0414 SAMEA104035581 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090722/ERR2090722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090722/ERR2090722_2.fastq.gz 2692316 WGS aa08acf0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 52389015;57955330 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090722/ERR2090722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090722/ERR2090722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090722/22841_1#181.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090722/22841_1#181.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2090722/ERR2090722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2090722/ERR2090722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090722/22841_1#181.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090722/22841_1#181.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77715548;4439 ERS1699474 ERX2147516 GENOMIC DN477156T:F11 336539500 2017-08-08 SC_RUN_22841_1#181 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090722/22841_1#181.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090722/22841_1#181.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#181 ERR2090840 SC_EXP_22841_2#109 382 c56df0358c143b2cc82a04787908ea17;f41ee2e7126b8901a95b9fe01f225a82 1313 7ccc88dd8ad670e3f89b61bbccebefbc;f79b18a6384d677e3add8797b6f51ae8 SAMEA104035688 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090840/ERR2090840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090840/ERR2090840_2.fastq.gz 2816214 WGS b85ce370-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62271878;67504914 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090840/ERR2090840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090840/ERR2090840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090840/22841_2#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090840/22841_2#109.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090840/ERR2090840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090840/ERR2090840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090840/22841_2#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090840/22841_2#109.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92126805;4614 ERS1699581 ERX2147634 GENOMIC DN483654V:F2 352026750 2017-08-08 SC_RUN_22841_2#109 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090840/22841_2#109.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090840/22841_2#109.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#109 ERR2090667 SC_EXP_22841_1#126 433 e30bc2f4107f300ccdc47c18c159d129;b95f5a12ca48c24305a298c755459be7 1313 6615931c31da7ffc336dad735834880e;81051683c5d3367262b057d17c760c70 SAMEA104035512 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090667/ERR2090667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090667/ERR2090667_2.fastq.gz 2431062 WGS a7a62be0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 48870395;52678441 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090667/ERR2090667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090667/ERR2090667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090667/22841_1#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090667/22841_1#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090667/ERR2090667_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090667/ERR2090667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090667/22841_1#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090667/22841_1#126.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71081789;3990 ERS1699405 ERX2147461 GENOMIC DN477156T:G4 303882750 2017-08-08 SC_RUN_22841_1#126 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090667/22841_1#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090667/22841_1#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#126 ERR2090652 SC_EXP_22841_1#111 444 d706a107910f7640553081da50160dd3;3346dcc3ade138424ac095d0229d286d 1313 4cc29d0faf68bcbcc1116da01dcb331e;a20f24694af6528527367b123c1540ac SAMEA104035497 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090652/ERR2090652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090652/ERR2090652_2.fastq.gz 2786672 WGS a715d2c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 54607926;59053920 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090652/ERR2090652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/002/ERR2090652/ERR2090652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090652/22841_1#111.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090652/22841_1#111.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2090652/ERR2090652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/002/ERR2090652/ERR2090652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090652/22841_1#111.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090652/22841_1#111.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79722941;4592 ERS1699390 ERX2147446 GENOMIC DN477156T:H2 348334000 2017-08-08 SC_RUN_22841_1#111 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090652/22841_1#111.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090652/22841_1#111.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#111 ERR2090645 SC_EXP_22841_1#104 431 067f6840b903f314e37c1d6c5d55b194;97110752a7d1ad6e1b6833caf727fe2d 1313 131bf42dbb0349ebcb3afcd23226538c;6345f59c7b6021186d8eb1e2145316ef SAMEA104035300 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090645/ERR2090645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090645/ERR2090645_2.fastq.gz 2590200 WGS 92609d60-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 50225259;55060812 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090645/ERR2090645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090645/ERR2090645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090645/22841_1#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090645/22841_1#104.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090645/ERR2090645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090645/ERR2090645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090645/22841_1#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090645/22841_1#104.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73887651;4304 ERS1699193 ERX2147439 GENOMIC DN477156T:A2 323775000 2017-08-08 SC_RUN_22841_1#104 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090645/22841_1#104.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090645/22841_1#104.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#104 ERR2090449 SC_EXP_22667_7#177 438 7168d034bee0cdf68703c639a1cc0f56;881c80d865ec1fa95f033f167f556d72 1313 4cf9f4b37b2a493e994fe4df1bf8160e;6f4ecf671df54273e88c70d8c63b6939 SAMEA104035179 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090449/ERR2090449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090449/ERR2090449_2.fastq.gz 3220512 WGS 893c86e0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 63321120;68273624 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090449/ERR2090449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090449/ERR2090449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090449/22667_7#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090449/22667_7#177.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090449/ERR2090449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090449/ERR2090449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090449/22667_7#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090449/22667_7#177.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92606735;5238 ERS1699072 ERX2147243 GENOMIC DN486303N:B11 402564000 2017-08-08 SC_RUN_22667_7#177 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090449/22667_7#177.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090449/22667_7#177.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#177 ERR2089818 SC_EXP_22114_6#30 474 764da5636ae121f9c711ed4aac4ff2c8;9a2deaaa2180e87d3449e079af9e474c 1313 bb38ccffbf3eda183b97d3555dd26b37;2556fc6ad111217a102c5b2f657d736c SAMEA104155004 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089818/ERR2089818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089818/ERR2089818_2.fastq.gz 2187930 WGS 8e1efa00-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48658487;51161529 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089818/ERR2089818_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089818/ERR2089818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089818/22114_6#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089818/22114_6#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089818/ERR2089818_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089818/ERR2089818_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089818/22114_6#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089818/22114_6#30.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70830130;3623 ERS1814022 ERX2146612 GENOMIC DN478829S:F4 273491250 2017-08-08 SC_RUN_22114_6#30 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089818/22114_6#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089818/22114_6#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#30 ERR2090424 SC_EXP_22667_7#152 427 62dd89c0e6591aa9b99b2cbd447c5776;9e56c4417119fa394c768a25c701f2f0 1313 3be9855e2016f381f9529e0cc891042f;98ba745e5a79d40955f6df1baf1f53a8 SAMEA104035150 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090424/ERR2090424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090424/ERR2090424_2.fastq.gz 2851742 WGS 880f0360-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 57321766;61329161 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090424/ERR2090424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090424/ERR2090424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090424/22667_7#152.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090424/22667_7#152.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090424/ERR2090424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090424/ERR2090424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090424/22667_7#152.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090424/22667_7#152.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83664818;4687 ERS1699043 ERX2147218 GENOMIC DN486303N:H7 356467750 2017-08-08 SC_RUN_22667_7#152 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090424/22667_7#152.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090424/22667_7#152.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#152 ERR1836939 SC_EXP_21485_4#1 459 135ab663d24457dba7d51fe6170f925f;71decb8b919b5153aac712493bb9eec8 1313 1771fcbe5e9fcbd9888e5cfec70321e3;a85bb50a9e5dcb0ba6b8c70893d9f464 SAMEA4387941 2017-02-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/009/ERR1836939/ERR1836939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/009/ERR1836939/ERR1836939_2.fastq.gz 14211584 WGS 5ca82500-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 274039738;288959098 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/009/ERR1836939/ERR1836939_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/009/ERR1836939/ERR1836939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836939/21485_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836939/21485_4#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR183/009/ERR1836939/ERR1836939_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR183/009/ERR1836939/ERR1836939_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836939/21485_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836939/21485_4#1.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 428876363;22064 ERS1299390 ERX1898914 GENOMIC DN469131N:D1 1776448000 2017-02-14 SC_RUN_21485_4#1 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR183/ERR1836939/21485_4#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR183/ERR1836939/21485_4#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA812889 21485_4#1 ERR1202192 SC_EXP_17870_7#122 463 37add8cdd9f7355d854f0918a3c3438a;822ebf395c3334d594d143b1511055b9 1313 88700e9010eb9f3b3400cd84e78fa2c9;6cbc08a1b10bcfd0cc71b1493077e6a6 SAMEA3389682 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202192/ERR1202192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202192/ERR1202192_2.fastq.gz 2305416 WGS GPS_MW_1391_UNC-sc-2295924 RANDOM 44537574;47364319 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202192/ERR1202192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202192/ERR1202192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202192/17870_7#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202192/17870_7#122.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202192/ERR1202192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202192/ERR1202192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202192/17870_7#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202192/17870_7#122.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68619525;3849 ERS725785 ERX1274434 GENOMIC 14978398 288177000 2016-01-12 SC_RUN_17870_7#122 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202192/17870_7#122.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202192/17870_7#122.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#122 ERR1192077 SC_EXP_17794_8#66 441 0b57aad925a6cfb394338f8aa7770706;94ff57e989e1908a678816c518080e1b 1313 1507a83d65fecb9ba97e617eef3e7d04;6c47f04e8fb3dc3608dead860ffdb1c8 SAMEA3381601 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192077/ERR1192077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192077/ERR1192077_2.fastq.gz 2917946 WGS GPS_GM_2112-sc-2279480 RANDOM 56119572;56415530 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192077/ERR1192077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192077/ERR1192077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192077/17794_8#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192077/17794_8#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1192077/ERR1192077_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1192077/ERR1192077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192077/17794_8#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192077/17794_8#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86310106;4841 ERS719860 ERX1265461 GENOMIC 14941551 364743250 2015-12-17 SC_RUN_17794_8#66 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192077/17794_8#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192077/17794_8#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#66 ERR064157 SC_EXP_6949_1#19 259 8ef48ff421748f598be219aa1c52f5f8 1313 98135a4f0b8bf63f9044a751fceb10bd;3048704ecdc0cf49ec7d2dd2ff2abe82 SAMEA1028914 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064157/ERR064157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064157/ERR064157_2.fastq.gz 4223736 WGS SMRU2419-sc-2011-01-27-1062632 RANDOM 204755871;208666908 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064157/ERR064157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064157/ERR064157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064157/6949_1#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064157/ERR064157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064157/ERR064157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064157/6949_1#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 537563866 ERS021929 ERX042130 GENOMIC 3660695 633560400 2012-03-19 SC_RUN_6949_1#19 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064157/6949_1#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR1192056 SC_EXP_17794_8#45 441 0b953a7eb69c293166c2af1cf7705f83;17957090d8aa2a1a3af2ef70cbf11b29 1313 8ed17455a732a996b035d3ae5406dd6b;e73b90526a66354d3200e81d3bc97430 SAMEA3381560 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192056/ERR1192056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192056/ERR1192056_2.fastq.gz 2619796 WGS GPS_GM_2079-sc-2279438 RANDOM 50739273;52536683 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192056/ERR1192056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192056/ERR1192056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192056/17794_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192056/17794_8#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192056/ERR1192056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192056/ERR1192056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192056/17794_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192056/17794_8#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78913096;4375 ERS719819 ERX1265440 GENOMIC 14941584 327474500 2015-12-17 SC_RUN_17794_8#45 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192056/17794_8#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192056/17794_8#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#45 ERR064103 SC_EXP_6938_7#13 236 ee3bbd43b46156b4b2fc06e79b8ad746 1313 9cadc4ef23d60406803bba67873e8703;13e9f6b88940dbc34192b9178df9f682 SAMEA1028721 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064103/ERR064103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064103/ERR064103_2.fastq.gz 4811942 WGS SMRU2701-sc-2011-01-27-1062914 RANDOM 325395185;347120099 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064103/ERR064103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064103/ERR064103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064103/6938_7#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064103/ERR064103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064103/ERR064103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064103/6938_7#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 848214761 ERS022211 ERX042076 GENOMIC 3651721 721791300 2012-03-19 SC_RUN_6938_7#13 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064103/6938_7#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064042 SC_EXP_6925_8#17 228 7562f3b2064da289f6643444d4c68061 1313 b74d25caf203ea65d177411137dfc164;dcd6943fee6a2adb01b1ee795573f9ed SAMEA1029082 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064042/ERR064042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064042/ERR064042_2.fastq.gz 2953921 WGS SMRU2537-sc-2011-01-27-1062750 RANDOM 183486016;176081937 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064042/ERR064042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064042/ERR064042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064042/6925_8#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064042/ERR064042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064042/ERR064042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064042/6925_8#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 457801258 ERS022047 ERX042015 GENOMIC 3686206 443088150 2012-03-19 SC_RUN_6925_8#17 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064042/6925_8#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064048 SC_EXP_6925_8#23 228 a2439f44b2c009cf118661dbf0faaa05 1313 3ef171466084e6e0941c97a9cecaa0f4;63f08279fe4e69978767def2dc165a52 SAMEA1028691 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064048/ERR064048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064048/ERR064048_2.fastq.gz 2923041 WGS SMRU2543-sc-2011-01-27-1062756 RANDOM 178236953;170853762 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064048/ERR064048_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064048/ERR064048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064048/6925_8#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064048/ERR064048_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064048/ERR064048_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064048/6925_8#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 448360223 ERS022053 ERX042021 GENOMIC 3686212 438456150 2012-03-19 SC_RUN_6925_8#23 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064048/6925_8#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048196 SC_EXP_6631_7#15 213 647a9b66b30829d81ae6f05f3102bbf5 1313 8b11a2031f8420418cbffad9d8f76d30;eee8f018f1bcad8cfa14ce5c148835f2 SAMEA1024076 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048196/ERR048196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048196/ERR048196_2.fastq.gz 3736047 WGS SMRU519-sc-2011-01-27-1060708 RANDOM 209089260;205818806 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048196/ERR048196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048196/ERR048196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048196/6631_7#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048196/ERR048196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048196/ERR048196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048196/6631_7#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 528776309 ERS019677 ERX025259 GENOMIC 3037838 560407050 2011-10-11 SC_RUN_6631_7#15 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048196/6631_7#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047894 SC_EXP_6593_4#1 238 2eb47beb86e4c510d81466bdb931c9ac 1313 c0049a12eaf3f29efc34c79f7d1be8bf;9c382bc61faf7198caac3406b66c88bf SAMEA1024193 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047894/ERR047894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047894/ERR047894_2.fastq.gz 6440668 WGS SMRU97-sc-2011-01-27-1060286 RANDOM 372258576;397666667 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047894/ERR047894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047894/ERR047894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047894/6593_4#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047894/ERR047894_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047894/ERR047894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047894/6593_4#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 987290757 ERS019255 ERX024957 GENOMIC 2882476 966100200 2011-10-11 SC_RUN_6593_4#1 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047894/6593_4#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048023 SC_EXP_6630_4#10 226 d0b8d2d7f86a1074806290900bfe7542 1313 1c6c2e9161b563afd91510a9746364dc;19086ff356f3d005f37086c15c1bffc2 SAMEA1024127 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048023/ERR048023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048023/ERR048023_2.fastq.gz 2251977 WGS SMRU394-sc-2011-01-27-1060583 RANDOM 136937157;134777246 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048023/ERR048023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048023/ERR048023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048023/6630_4#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048023/ERR048023_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048023/ERR048023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048023/6630_4#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 347976678 ERS019552 ERX025086 GENOMIC 2952181 337796550 2011-10-11 SC_RUN_6630_4#10 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048023/6630_4#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048122 SC_EXP_6631_4#13 234 13095244f900424af7a6aea515b540e9 1313 123a8ac38262110d9ea5261c548ce775;5d304a8f31482c89a558670ad34a2104 SAMEA1023844 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048122/ERR048122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048122/ERR048122_2.fastq.gz 3802816 WGS SMRU445-sc-2011-01-27-1060634 RANDOM 214780812;201016752 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048122/ERR048122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048122/ERR048122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048122/6631_4#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048122/ERR048122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048122/ERR048122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048122/6631_4#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 532038876 ERS019603 ERX025185 GENOMIC 2952232 570422400 2011-10-11 SC_RUN_6631_4#13 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048122/6631_4#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054429 SC_EXP_6753_1#16 224 dafb6f8929e2da8cd712f820584d452c 1313 4bcfc36ee08534dec7b8a938966c90da;42f5baa730d6a5e0d11dbb7e39c86c68 SAMEA1025357 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054429/ERR054429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054429/ERR054429_2.fastq.gz 4266331 WGS SMRU1480-sc-2011-01-27-1061693 RANDOM 219092479;220857460 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054429/ERR054429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054429/ERR054429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054429/6753_1#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054429/ERR054429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054429/ERR054429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054429/6753_1#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 555500104 ERS020990 ERX031475 GENOMIC 3414164 639949650 2011-11-15 SC_RUN_6753_1#16 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054429/6753_1#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054632 SC_EXP_6755_6#4 249 8d1c88f8c9adf8a973bdd2f8a9a72404 1313 654d83febf0fa72c6669cd96718f5c29;cb118329d1c6106c544e40a9afeec270 SAMEA1025454 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054632/ERR054632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054632/ERR054632_2.fastq.gz 8951590 WGS SMRU1180-sc-2011-01-27-1061393 RANDOM 478649299;501682416 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054632/ERR054632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054632/ERR054632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054632/6755_6#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054632/ERR054632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054632/ERR054632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054632/6755_6#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1228448329 ERS020690 ERX031678 GENOMIC 3308028 1342738500 2011-11-15 SC_RUN_6755_6#4 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054632/6755_6#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054619 SC_EXP_6755_5#15 248 85c6c6d96bab78dd6aac205bcbcc8267 1313 c291de7021cf4063ceaf54a5fe70da2f;e517fde696f94374ef25247a025b068d SAMEA1025223 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054619/ERR054619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054619/ERR054619_2.fastq.gz 6931019 WGS SMRU1167-sc-2011-01-27-1061380 RANDOM 367813404;383429083 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054619/ERR054619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054619/ERR054619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054619/6755_5#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054619/ERR054619_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054619/ERR054619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054619/6755_5#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 954042498 ERS020677 ERX031665 GENOMIC 3307627 1039652850 2011-11-15 SC_RUN_6755_5#15 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054619/6755_5#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054559 SC_EXP_6755_3#3 217 2c932edb9797d64e81930dbccf936f86 1313 eed00eb955cb689aab9f9a74923d6a31;a3cfe615542d891f16b47946006b4e25 SAMEA1024550 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054559/ERR054559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054559/ERR054559_2.fastq.gz 4345368 WGS SMRU867-sc-2011-01-27-1061080 RANDOM 212542109;217775044 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054559/ERR054559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054559/ERR054559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054559/6755_3#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054559/ERR054559_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054559/ERR054559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054559/6755_3#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 557097534 ERS020377 ERX031605 GENOMIC 3152388 651805200 2011-11-15 SC_RUN_6755_3#3 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054559/6755_3#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054551 SC_EXP_6755_2#19 204 9644298cadd9cc718ac88b7cd04e4e24 1313 09adf4c558df8b756889ac0a8ef2347d;5c07a9d8ee30cd7f99b921be3d1cba52 SAMEA1024595 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054551/ERR054551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054551/ERR054551_2.fastq.gz 3464320 WGS SMRU811-sc-2011-01-27-1061000 RANDOM 167002822;171023337 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054551/ERR054551_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054551/ERR054551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054551/6755_2#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054551/ERR054551_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054551/ERR054551_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054551/6755_2#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 434986777 ERS020321 ERX031597 GENOMIC 3152320 519648000 2011-11-15 SC_RUN_6755_2#19 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054551/6755_2#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054469 SC_EXP_6753_3#9 216 d203f5bda75a52e1ec258b4618bae351 1313 5ffbad7787b541c233473ad8dc3c3086;ab64422f238687bf349c6fd25abce64e SAMEA1025526 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054469/ERR054469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054469/ERR054469_2.fastq.gz 5396469 WGS SMRU1521-sc-2011-01-27-1061734 RANDOM 351954330;370848483 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054469/ERR054469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054469/ERR054469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054469/6753_3#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054469/ERR054469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054469/ERR054469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054469/6753_3#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 913612357 ERS021031 ERX031515 GENOMIC 3414206 809470350 2011-11-15 SC_RUN_6753_3#9 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054469/6753_3#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR066319 SC_EXP_6983_6#48 237 b5b1c4b004c144e5a10c7ad73607ee90 1313 0e08b35bb788d4de803c4bdd673c4f34;7ba05ad33a0ff260cb58cbcc66bf86ee SAMEA1029109 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066319/ERR066319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066319/ERR066319_2.fastq.gz 6040351 WGS SMRU2352-sc-2011-01-27-1062565 RANDOM 418591330;426823214 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066319/ERR066319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066319/ERR066319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066319/6983_6#48.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066319/ERR066319_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066319/ERR066319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066319/6983_6#48.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1060082085 ERS021861 ERX044182 GENOMIC 3594972 906052650 2012-03-19 SC_RUN_6983_6#48 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066319/6983_6#48.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR067856 SC_EXP_6972_5#17 233 0977f546ced68797d3781b1ff325a913 1313 0ab88aaa71267b7ca1cfd45b8572bd29;d5d8d9914a12767682fa445608b517ac SAMEA1029108 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067856/ERR067856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067856/ERR067856_2.fastq.gz 4663101 WGS SMRU2633-sc-2011-01-27-1062846 RANDOM 293050361;292941444 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067856/ERR067856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067856/ERR067856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067856/6972_5#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067856/ERR067856_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067856/ERR067856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067856/6972_5#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 754809879 ERS022143 ERX045719 GENOMIC 3686310 699465150 2012-01-16 SC_RUN_6972_5#17 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067856/6972_5#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR057817 SC_EXP_6807_3#11 219 5e4149e25fe95f76a8399c224debb49c 1313 02bc850b714ec6b71cd21db94d2c50cf;ec4e8ce03cfec6bcaf4025f1fd5b3634 SAMEA1025583 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057817/ERR057817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057817/ERR057817_2.fastq.gz 6838306 WGS SMRU1619-sc-2011-01-27-1061832 RANDOM 435261832;488255409 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057817/ERR057817_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057817/ERR057817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057817/6807_3#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057817/ERR057817_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057817/ERR057817_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057817/6807_3#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1194859691 ERS021129 ERX035663 GENOMIC 3414316 1025745900 2011-12-05 SC_RUN_6807_3#11 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057817/6807_3#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056891 SC_EXP_6805_7#17 233 685c0ca77a05ae6d218cbe314fc3572a 1313 2440b71d5a310aecbffebeff40efb01d;5589300aa1b0468420ed51247d9ee190 SAMEA1025804 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056891/ERR056891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056891/ERR056891_2.fastq.gz 5032723 WGS SMRU1746-sc-2011-01-27-1061959 RANDOM 236524421;245717153 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056891/ERR056891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056891/ERR056891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056891/6805_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056891/ERR056891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056891/ERR056891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056891/6805_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 610687323 ERS021256 ERX034735 GENOMIC 3481249 754908450 2012-03-22 SC_RUN_6805_7#17 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056891/6805_7#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR057793 SC_EXP_6807_2#11 221 c90e55c983b114a3fccd56d9665a3c4f 1313 7761cc8cf8277211a41cf5a19b37bc72;25f7912f27c525635639a642c436100c SAMEA1025375 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057793/ERR057793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057793/ERR057793_2.fastq.gz 3247911 WGS SMRU1595-sc-2011-01-27-1061808 RANDOM 194569290;194545563 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057793/ERR057793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057793/ERR057793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057793/6807_2#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057793/ERR057793_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057793/ERR057793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057793/6807_2#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 512026615 ERS021105 ERX035639 GENOMIC 3414291 487186650 2011-12-05 SC_RUN_6807_2#11 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057793/6807_2#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056885 SC_EXP_6805_7#11 233 9e2edbb40ee1ec9e716291afa0ff3c10 1313 7d480e0e5e45b6c06d12d3b97b7e360a;aab7debc4c7ac125b1c209688cc2e341 SAMEA1025739 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056885/ERR056885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056885/ERR056885_2.fastq.gz 5766544 WGS SMRU1740-sc-2011-01-27-1061953 RANDOM 264284062;273810012 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056885/ERR056885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056885/ERR056885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056885/6805_7#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056885/ERR056885_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056885/ERR056885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056885/6805_7#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 694306555 ERS021250 ERX034729 GENOMIC 3481243 864981600 2012-03-22 SC_RUN_6805_7#11 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056885/6805_7#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056886 SC_EXP_6805_7#12 233 0b2013d49d6bbe2215b284fe2492a80f 1313 a1f3a48dc5b511fa75183bd750f47b01;f6b5505111c1304fced19964daa1c0b4 SAMEA1025752 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056886/ERR056886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056886/ERR056886_2.fastq.gz 5828000 WGS SMRU1741-sc-2011-01-27-1061954 RANDOM 272067551;282738842 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056886/ERR056886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056886/ERR056886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056886/6805_7#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056886/ERR056886_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056886/ERR056886_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056886/6805_7#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 700813340 ERS021251 ERX034730 GENOMIC 3481244 874200000 2012-03-22 SC_RUN_6805_7#12 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056886/6805_7#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056713 SC_EXP_6775_2#7 201 ea9ec771d1476631237c12b5c3083325 1313 b49e851e2d717bf66dcee900a7cbd781;24742c0b0a52f4c1d0edc17fe1b75b9a SAMEA1024907 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056713/ERR056713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056713/ERR056713_2.fastq.gz 2158320 WGS SMRU847-sc-2011-01-27-1061036 RANDOM 132868001;138549174 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056713/ERR056713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056713/ERR056713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056713/6775_2#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056713/ERR056713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056713/ERR056713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056713/6775_2#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 348946178 ERS020357 ERX034557 GENOMIC 3152368 323748000 2011-11-29 SC_RUN_6775_2#7 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056713/6775_2#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR049115 SC_EXP_6649_8#13 219 969c48ef535db3c00e837dc1697b2674 1313 be9bea34e621267ad401f87a151c9d75;63285ba9230b077089cbe5da4306b934 SAMEA1023991 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049115/ERR049115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049115/ERR049115_2.fastq.gz 4043765 WGS SMRU181-sc-2011-01-27-1060370 RANDOM 226241143;231765121 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049115/ERR049115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049115/ERR049115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049115/6649_8#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049115/ERR049115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049115/ERR049115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049115/6649_8#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 578052952 ERS019339 ERX026182 GENOMIC 2950514 606564750 2011-10-18 SC_RUN_6649_8#13 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049115/6649_8#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR056712 SC_EXP_6775_2#6 201 fe0eac9b3749f6bb33cfc05a9aff1b7d 1313 a20c620eaa0650b828f755244ad72f2a;04332c2630f1253106e1d9489140b173 SAMEA1024834 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056712/ERR056712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056712/ERR056712_2.fastq.gz 5136118 WGS SMRU846-sc-2011-01-27-1061035 RANDOM 318379994;336512926 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056712/ERR056712_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056712/ERR056712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056712/6775_2#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056712/ERR056712_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056712/ERR056712_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056712/6775_2#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 823927327 ERS020356 ERX034556 GENOMIC 3152367 770417700 2011-11-29 SC_RUN_6775_2#6 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056712/6775_2#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR049094 SC_EXP_6641_6#16 219 7a197c9f60a0aa20905d0015d0efbda8 1313 0135f93cb7e3d61b47b4e979be272509;6c823d0aa13c679f935d727d1ca6c4f3 SAMEA1023790 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049094/ERR049094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049094/ERR049094_2.fastq.gz 8507773 WGS SMRU160-sc-2011-01-27-1060349 RANDOM 550176037;564327021 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049094/ERR049094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049094/ERR049094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049094/6641_6#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049094/ERR049094_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049094/ERR049094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049094/6641_6#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1429991155 ERS019318 ERX026161 GENOMIC 3040287 1276165950 2011-10-18 SC_RUN_6641_6#16 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049094/6641_6#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR049099 SC_EXP_6641_6#21 219 7b81c146593513185198f5c3e04dd6f9 1313 d819c0d53cbbb764b0e538f5ec7d25b8;f949b886399436739091ec48c3d0a404 SAMEA1024021 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049099/ERR049099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049099/ERR049099_2.fastq.gz 4087506 WGS SMRU165-sc-2011-01-27-1060354 RANDOM 277923285;282690204 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049099/ERR049099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049099/ERR049099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049099/6641_6#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049099/ERR049099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049099/ERR049099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049099/6641_6#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 710543766 ERS019323 ERX026166 GENOMIC 3040292 613125900 2011-10-18 SC_RUN_6641_6#21 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049099/6641_6#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR039642 SC_EXP_6259_8#11 183 160cc0475ed78fabe6483394538737de 1313 0a670f43c30ad0f3ac7580572fcc73bc;1bfc55ff04d37c164b4beaf3cceb39f6 SAMEA974655 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039642/ERR039642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039642/ERR039642_2.fastq.gz 5401941 WGS SMRU83-sc-2011-01-27-1026508 RANDOM 281847624;289633789 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039642/ERR039642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039642/ERR039642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039642/6259_8#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039642/ERR039642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039642/ERR039642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039642/6259_8#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 749029295 ERS019241 ERX016815 GENOMIC 2591013 810291150 2011-07-27 SC_RUN_6259_8#11 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039642/6259_8#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR039641 SC_EXP_6259_8#10 183 b2cb1aa27a4f5249e1b750fe2af3fbd4 1313 cc322b4e03b891c823d82109f8c53721;7809f1227814a4d0a22d235bcda16d1f SAMEA974656 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039641/ERR039641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039641/ERR039641_2.fastq.gz 4431765 WGS SMRU82-sc-2011-01-27-1026507 RANDOM 227522618;235076246 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039641/ERR039641_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039641/ERR039641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039641/6259_8#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039641/ERR039641_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039641/ERR039641_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039641/6259_8#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 590858679 ERS019240 ERX016814 GENOMIC 2591012 664764750 2011-07-27 SC_RUN_6259_8#10 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039641/6259_8#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR024523 SC_EXP_4995_7#3 232 e728c6d30c335ef87f1632feebfc5d79 1313 5566fe8e58c094cbb439d3c0b6863ee8;b25170c311bf1599b98dfddada66756b SAMEA971410 2011-01-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024523/ERR024523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024523/ERR024523_2.fastq.gz 3672029 WGS B14457-sc-2010-05-07-40399 RANDOM 314490947;274023725 SRF Streptococcus pneumoniae Pneumococcal in morbus diversity (QEH, Blantyre, Malawi) ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024523/ERR024523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024523/ERR024523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR024/ERR024523/4995_7#3.srf ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR024/ERR024523/ERR024523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR024/ERR024523/ERR024523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR024/ERR024523/4995_7#3.srf Illumina Genome Analyzer II PAIRED Wellcome Sanger Institute;SC PRJEB2110 ERP000164 5476199071 ERS008345 ERX2007626 GENOMIC NT207951V 822534496 2011-01-13 SC_RUN_4995_7#3 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR024/ERR024523/4995_7#3.srf Pneumococcal in morbus diversity (QEH, Blantyre, Malawi)-sc-2010-04-06 Illumina Genome Analyzer II paired end sequencing ERA015791 4995_7#3 ERR1422532 SC_EXP_19084_8#19 436 7a9c1eb36cee49de8ae5413a6e29a174;40a453a5df39f1b93ebdeeaa5c11091c 1313 3d660f879b6151f7080616cc36558de7;a14133c81953791cdb9e31f9cd9dc1ac SAMEA3714356 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422532/ERR1422532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422532/ERR1422532_2.fastq.gz 2429526 WGS 4d707c30-41bd-11e5-998e-3c4a9275d6c6 RANDOM 55394150;55493038 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422532/ERR1422532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422532/ERR1422532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422532/19084_8#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422532/19084_8#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/002/ERR1422532/ERR1422532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/002/ERR1422532/ERR1422532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422532/19084_8#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422532/19084_8#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79979019;4070 ERS1021505 ERX1493114 GENOMIC 15758403 303690750 2016-05-24 SC_RUN_19084_8#19 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422532/19084_8#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422532/19084_8#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#19 ERR1422539 SC_EXP_19084_8#26 432 81d3784a177c661cf02226f0cbfc36f6;b6eb2b402e68fd43e3efa2dee7ffcc37 1313 1bedd8df82795a09e3955b2be9b61985;1d312eae2a19dcf61e59fe72ce6c8e1a SAMEA3714363 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422539/ERR1422539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422539/ERR1422539_2.fastq.gz 2625352 WGS 4da7dfe0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 59478915;59195160 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422539/ERR1422539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422539/ERR1422539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422539/19084_8#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422539/19084_8#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422539/ERR1422539_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422539/ERR1422539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422539/19084_8#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422539/19084_8#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85459677;4409 ERS1021512 ERX1493121 GENOMIC 15758392 328169000 2016-05-24 SC_RUN_19084_8#26 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422539/19084_8#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422539/19084_8#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#26 ERR1288901 SC_EXP_18456_1#92 459 c7faa6686bca3425cc1c9fc7fb9a2746;e1d2514e1df32647096e01b321787f6c 1313 21c0e7be9033dc8eca0047c0177977a1;340d88d048b65080924ba4b98bdf3669 SAMEA3389187 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288901/ERR1288901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288901/ERR1288901_2.fastq.gz 2521962 WGS GPS_MW_D27645-sc-2295660 RANDOM 60860279;54380832 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288901/ERR1288901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288901/ERR1288901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288901/18456_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288901/18456_1#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288901/ERR1288901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288901/ERR1288901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288901/18456_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288901/18456_1#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81919869;4206 ERS725290 ERX1360507 GENOMIC 14970327 315245250 2016-02-23 SC_RUN_18456_1#92 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288901/18456_1#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288901/18456_1#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#92 ERR1422348 SC_EXP_19084_7#19 461 56298c773fa817bb4f6374a5c7b0043c;977832c3e9b5a308e09790cf0b5d8026 1313 b88fd6c172f687ae57731302dbcf575c;1405483e46d6c881a9bb6b0daeb78c2e SAMEA3714172 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422348/ERR1422348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422348/ERR1422348_2.fastq.gz 1971072 WGS 4454a310-41bd-11e5-998e-3c4a9275d6c6 RANDOM 43018543;43123930 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422348/ERR1422348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422348/ERR1422348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422348/19084_7#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422348/19084_7#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422348/ERR1422348_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422348/ERR1422348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422348/19084_7#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422348/19084_7#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 61996642;3388 ERS1021321 ERX1492930 GENOMIC 15737998 246384000 2016-05-24 SC_RUN_19084_7#19 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422348/19084_7#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422348/19084_7#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#19 ERR1288873 SC_EXP_18456_1#64 459 d007a24d030be5a0a162f09def850811;a6fad03cfeb29439d5ce990808e93d25 1313 6e5c0d62e0ae108a9e953ca8f8456bba;25809cf28dec671178b5e7b2fd2143ba SAMEA3389296 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288873/ERR1288873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288873/ERR1288873_2.fastq.gz 2264784 WGS GPS_MW_151125-sc-2295769 RANDOM 55040872;47908560 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288873/ERR1288873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288873/ERR1288873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288873/18456_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288873/18456_1#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/003/ERR1288873/ERR1288873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/003/ERR1288873/ERR1288873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288873/18456_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288873/18456_1#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72478215;3821 ERS725399 ERX1360479 GENOMIC 14970371 283098000 2016-02-23 SC_RUN_18456_1#64 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288873/18456_1#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288873/18456_1#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#64 ERR1288854 SC_EXP_18456_1#45 459 a12487f0952c9b429a1cd100ad55985a;f311ddc81b2edb8dc455e2206ddc67d8 1313 f3719a47fde967e1be17ed53e9243452;f700f1296c8328b083581af5c8674933 SAMEA3389258 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288854/ERR1288854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288854/ERR1288854_2.fastq.gz 2529530 WGS GPS_MW_150408-sc-2295731 RANDOM 59126706;53686528 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288854/ERR1288854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288854/ERR1288854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288854/18456_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288854/18456_1#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288854/ERR1288854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288854/ERR1288854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288854/18456_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288854/18456_1#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79355735;4164 ERS725361 ERX1360460 GENOMIC 14970333 314330791 2016-02-23 SC_RUN_18456_1#45 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288854/18456_1#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288854/18456_1#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#45 ERR1288829 SC_EXP_18456_1#20 459 24479f693cd1f4680087f5a36d16ce9c;e0d69150dd85c86dfc9f329ceeb6e9a4 1313 c1531dc987c202472f2ab6f1d323e91c;a35c2bba160a3a5f790ea7b781383516 SAMEA3389208 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288829/ERR1288829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288829/ERR1288829_2.fastq.gz 2264070 WGS GPS_MW_148815-sc-2295681 RANDOM 54064256;48670014 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288829/ERR1288829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288829/ERR1288829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288829/18456_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288829/18456_1#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/009/ERR1288829/ERR1288829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/009/ERR1288829/ERR1288829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288829/18456_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288829/18456_1#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72429277;3813 ERS725311 ERX1360435 GENOMIC 14970318 283008750 2016-02-23 SC_RUN_18456_1#20 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288829/18456_1#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288829/18456_1#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#20 ERR909157 SC_EXP_15841_4#23 228 b4e4ec017516a317cc74a29aed6b8757;f03b9d732be09377c351bf6f89f72213 1313 0e2cce0b927b262c95819e4e6d9fd81b;618a31eeae69bc96f2829a78b9c69fb7 SAMEA3208764 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909157/ERR909157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909157/ERR909157_2.fastq.gz 5647060 WGS GPS_ZA_carriage_SP835-sc-2204899 RANDOM 178874999;184169615 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909157/ERR909157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909157/ERR909157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909157/15841_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909157/15841_4#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909157/ERR909157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909157/ERR909157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909157/15841_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909157/15841_4#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 292532542;8966 ERS639866 ERX988412 GENOMIC 13267979 564706000 2015-06-09 SC_RUN_15841_4#23 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909157/15841_4#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909157/15841_4#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#23 ERR997616 SC_EXP_16399_6#75 220 ebe59fa10308bac9e577e95a079b7681;596a0e6d619b270fd4290936a83e4d44 1313 b9cd5da6bd41816dfa25a059de43f14b;f7c9fd22fa1bca9371179538a955dd49 SAMEA3309658 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997616/ERR997616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997616/ERR997616_2.fastq.gz 5870642 WGS GPS_GM_1677-sc-2206461 RANDOM 196847484;203395257 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997616/ERR997616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997616/ERR997616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997616/16399_6#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997616/16399_6#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997616/ERR997616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997616/ERR997616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997616/16399_6#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997616/16399_6#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326588789;9417 ERS686120 ERX1076652 GENOMIC 13835398 587064200 2015-09-04 SC_RUN_16399_6#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997616/16399_6#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997616/16399_6#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#75 ERR1202302 SC_EXP_17870_8#42 447 d979aed8dcb65c3959bbe59a37196330;2ad85a482f138a615f013c23a7464828 1313 f6a2d16e85d33188464262981bac6484;21797b113fd6ca56ee2c417959c6fce3 SAMEA3389891 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202302/ERR1202302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202302/ERR1202302_2.fastq.gz 2214816 WGS GPS_MW_D8062-sc-2296135 RANDOM 43937617;45201072 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202302/ERR1202302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202302/ERR1202302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202302/17870_8#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202302/17870_8#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202302/ERR1202302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202302/ERR1202302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202302/17870_8#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202302/17870_8#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65901451;3711 ERS725994 ERX1274544 GENOMIC 14977689 276852000 2016-01-12 SC_RUN_17870_8#42 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202302/17870_8#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202302/17870_8#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#42 ERR925296 SC_EXP_15995_2#85 219 5e3d5d9ccd92b21af16e8415e3a9f030;859e516993e98f6fd2007c62f4ac9da2 1313 c626d13a20c4d3dce01ed75c1ec7c9b2;c6d1b27dedd2bc4aa9dc9fa927c1a839 SAMEA3209016 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925296/ERR925296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925296/ERR925296_2.fastq.gz 1850200 WGS GPS_ZA_carriage_SP1009-sc-2205153 RANDOM 57932011;59963841 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925296/ERR925296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925296/ERR925296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925296/15995_2#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925296/15995_2#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925296/ERR925296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925296/ERR925296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925296/15995_2#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925296/15995_2#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 95479085;3138 ERS640118 ERX1004571 GENOMIC 13301172 185020000 2015-06-23 SC_RUN_15995_2#85 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925296/15995_2#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925296/15995_2#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#85 ERR1202546 SC_EXP_17966_5#96 464 d7e34249cd18f107991f80afd747a8c5;74eea9f091d5aa3db9e73fe970b63a75 1313 0b60ed6bd4a2f55cdea6d0bacb7e60f5;3aaf325fbdaae1469d03db53375b28bc SAMEA3390018 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202546/ERR1202546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202546/ERR1202546_2.fastq.gz 1957584 WGS GPS_MW_BKR5MG-sc-2296263 RANDOM 34706985;36149777 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202546/ERR1202546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202546/ERR1202546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202546/17966_5#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202546/17966_5#96.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202546/ERR1202546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202546/ERR1202546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202546/17966_5#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202546/17966_5#96.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 49506377;3271 ERS726121 ERX1274788 GENOMIC 15024679 244698000 2016-01-12 SC_RUN_17966_5#96 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202546/17966_5#96.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202546/17966_5#96.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#96 ERR909022 SC_EXP_15841_2#78 229 5f554f55ea28c91d63bd23bed05591b3;d546aa8515b649b05180cf3b406c893d 1313 28833048ad3976432c39ef61dab3469c;74c3adeee4a3d55ded7955e9ed74d232 SAMEA3207274 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909022/ERR909022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909022/ERR909022_2.fastq.gz 5596398 WGS GPS_ZA_carriage_SP640-sc-2192212 RANDOM 179837480;186486059 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909022/ERR909022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909022/ERR909022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909022/15841_2#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909022/15841_2#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909022/ERR909022_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909022/ERR909022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909022/15841_2#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909022/15841_2#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298028290;8979 ERS639284 ERX988277 GENOMIC 13265149 559639800 2015-06-09 SC_RUN_15841_2#78 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909022/15841_2#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909022/15841_2#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#78 ERR869823 SC_EXP_15531_2#10 193 ac4bc7e07589962a0e438f49368c920f;0ca4b29dbe96633685d25c31d4870175 1313 1a0722b2a2b84185a50ab0396b2ccab5;5932805bb6d7ab703c8a7a6b5043e3de SAMEA3171241 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869823/ERR869823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869823/ERR869823_2.fastq.gz 3598586 WGS GPS_MW_1703-sc-2139805 RANDOM 137895296;131954256 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869823/ERR869823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869823/ERR869823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869823/15531_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869823/15531_2#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869823/ERR869823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869823/ERR869823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869823/15531_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869823/15531_2#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222162952;5823 ERS625632 ERX949424 GENOMIC 12862638 359858600 2015-05-06 SC_RUN_15531_2#10 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869823/15531_2#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869823/15531_2#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_2#10 ERR869869 SC_EXP_15531_2#56 193 7f0cb08337d680029f9d81eeba652809;aa6143eae8548a21c1ddf2ba29543490 1313 b192b90fb3aad03788d6f30f655967cd;5ac75fbecf4d82dd78f581c39f4a1e7d SAMEA3171291 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869869/ERR869869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869869/ERR869869_2.fastq.gz 3991474 WGS GPS_MW_154689-sc-2139856 RANDOM 151277884;144939618 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869869/ERR869869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869869/ERR869869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869869/15531_2#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869869/15531_2#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869869/ERR869869_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869869/ERR869869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869869/15531_2#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869869/15531_2#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245230266;6399 ERS625682 ERX949470 GENOMIC 12862715 399147400 2015-05-06 SC_RUN_15531_2#56 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869869/15531_2#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869869/15531_2#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_2#56 ERR870030 SC_EXP_15531_4#28 207 5e31edd3dc49f14a1ff941aee05851a2;d9f20c4ff1c34856dc38d9973f950816 1313 ae8e48f4ee6312c310c1326da5d052f9;3139e477dd19c8acbb8b015e2f17edac SAMEA3171627 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870030/ERR870030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870030/ERR870030_2.fastq.gz 4520170 WGS GPS_MW_150410-sc-2140021 RANDOM 175193734;166464463 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870030/ERR870030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870030/ERR870030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870030/15531_4#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870030/15531_4#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870030/ERR870030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870030/ERR870030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870030/15531_4#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870030/15531_4#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283091486;7253 ERS626018 ERX949631 GENOMIC 12882820 452017000 2015-05-06 SC_RUN_15531_4#28 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870030/15531_4#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870030/15531_4#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#28 ERR869832 SC_EXP_15531_2#19 193 f0329a241ed44bae8946706bc816cff8;d9baec0338c32d4421b20d5a82843af0 1313 d6911d4ca605d51919e969ff172ac20b;017aae4f646c31b314c0bfe9f83c09fc SAMEA3171250 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869832/ERR869832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869832/ERR869832_2.fastq.gz 4708410 WGS GPS_MW_1819-sc-2139814 RANDOM 178434989;169931566 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869832/ERR869832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869832/ERR869832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869832/15531_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869832/15531_2#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869832/ERR869832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869832/ERR869832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869832/15531_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869832/15531_2#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288102172;7549 ERS625641 ERX949433 GENOMIC 12862651 470841000 2015-05-06 SC_RUN_15531_2#19 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869832/15531_2#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869832/15531_2#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_2#19 ERR870027 SC_EXP_15531_4#25 207 35339eba32fa26ee99829042cb6251ce;1111645612e50c25043f439cd27bb925 1313 664154886dcc27b98b455a2d1934509a;2b21dbf3432366489daf0d79ed15c466 SAMEA3171624 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870027/ERR870027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870027/ERR870027_2.fastq.gz 4628062 WGS GPS_MW_150411-sc-2140018 RANDOM 179803141;170257182 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870027/ERR870027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870027/ERR870027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870027/15531_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870027/15531_4#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870027/ERR870027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870027/ERR870027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870027/15531_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870027/15531_4#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 290000834;7427 ERS626015 ERX949628 GENOMIC 12882784 462806200 2015-05-06 SC_RUN_15531_4#25 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870027/15531_4#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870027/15531_4#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#25 ERR869997 SC_EXP_15531_3#90 199 1824f945acf189289e4427e0a043f669;17202af7bfa1203d375f16c9fab8fb7a 1313 d42405c33cd0049d9b4c901ec9f59d3c;c56f959ffd90fbc2452eb9b073608d0e SAMEA3171594 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869997/ERR869997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869997/ERR869997_2.fastq.gz 4071900 WGS GPS_MW_151126-sc-2139988 RANDOM 155382447;148512535 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869997/ERR869997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869997/ERR869997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869997/15531_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869997/15531_3#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869997/ERR869997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869997/ERR869997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869997/15531_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869997/15531_3#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251295432;6613 ERS625985 ERX949598 GENOMIC 12862551 407190000 2015-05-06 SC_RUN_15531_3#90 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869997/15531_3#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869997/15531_3#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_3#90 ERR862514 SC_EXP_15378_4#66 205 f4061653d6e943fc699c305a15820dad;78b9e1394de2de71d392cc514c05a31f 1313 b36af0fdeb3296d72477e07272ddad5d;c5085ecd30036ca79cedcea44866f0a7 SAMEA3171202 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862514/ERR862514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862514/ERR862514_2.fastq.gz 5318134 WGS GPS_MW_2298-sc-2139766 RANDOM 179055090;182478564 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862514/ERR862514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862514/ERR862514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862514/15378_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862514/15378_4#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862514/ERR862514_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862514/ERR862514_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862514/15378_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862514/15378_4#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294308962;8464 ERS625593 ERX942164 GENOMIC 12826885 531813400 2015-04-21 SC_RUN_15378_4#66 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862514/15378_4#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862514/15378_4#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#66 ERR862330 SC_EXP_15378_2#72 205 5bf252f23026ea9a1c63dcf95ea62355;caebe85b5239d55ed17a095b967a581d 1313 f4b4f3bb51c9eda3c5cfdcec130dfe05;b5da7826140bef4ccb23c98d3b550b8a SAMEA3171010 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862330/ERR862330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862330/ERR862330_2.fastq.gz 3287650 WGS GPS_MW_2444-sc-2139572 RANDOM 96700834;99472848 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862330/ERR862330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862330/ERR862330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862330/15378_2#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862330/15378_2#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862330/ERR862330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862330/ERR862330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862330/15378_2#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862330/15378_2#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 155646944;5302 ERS625401 ERX941980 GENOMIC 12810526 328765000 2015-04-21 SC_RUN_15378_2#72 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862330/15378_2#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862330/15378_2#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#72 ERR862503 SC_EXP_15378_4#55 205 404f333e3a04d83bdcff4a04f7c02022;7f4ae5dbc6bae716ebe987ae926d4e09 1313 c51fd706bf62948509fea65d0571e6ba;bafc12190685d5c7ff786c3f2ed72dd9 SAMEA3171191 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862503/ERR862503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862503/ERR862503_2.fastq.gz 5059560 WGS GPS_MW_154700-sc-2139755 RANDOM 171324840;175027109 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862503/ERR862503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862503/ERR862503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862503/15378_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862503/15378_4#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862503/ERR862503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862503/ERR862503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862503/15378_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862503/15378_4#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281645303;8018 ERS625582 ERX942153 GENOMIC 12826943 505956000 2015-04-21 SC_RUN_15378_4#55 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862503/15378_4#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862503/15378_4#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#55 ERR750989 SC_EXP_14723_3#83 222 fd2dc20445caafbc72b2783b53abf016;ef93dc536a64caa36c64f9c504df2c67 1313 a13fb482151abb9a68cddf25c870ba0f;3867192faf984a6ff34e1c38158caed0 SAMEA2797251 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750989/ERR750989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750989/ERR750989_2.fastq.gz 6290364 WGS GPS_US_PATH5430-sc-2139280 RANDOM 234193328;238229947 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750989/ERR750989_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750989/ERR750989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750989/14723_3#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750989/14723_3#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750989/ERR750989_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750989/ERR750989_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750989/14723_3#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750989/14723_3#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 391490252;10012 ERS558862 ERX694671 GENOMIC 12133719 629036400 2015-02-03 SC_RUN_14723_3#83 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750989/14723_3#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750989/14723_3#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_3#83 ERR862441 SC_EXP_15378_3#88 191 838052055f76f364ced808dc4d42c5cc;5481c3e908c18e090780406e0c947a4c 1313 87e35bfdc1de19e92230038fa24cb91f;e967ff985f4046fc7215a15c3f97908a SAMEA3171125 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862441/ERR862441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862441/ERR862441_2.fastq.gz 5557378 WGS GPS_MW_1683-sc-2139688 RANDOM 191788776;197070061 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862441/ERR862441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862441/ERR862441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862441/15378_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862441/15378_3#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862441/ERR862441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862441/ERR862441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862441/15378_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862441/15378_3#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318276839;8935 ERS625516 ERX942091 GENOMIC 12815480 555737800 2015-04-21 SC_RUN_15378_3#88 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862441/15378_3#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862441/15378_3#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#88 ERR600365 SC_EXP_13415_4#55 250 2c4d9d17a92575f60e7580558565e3d8;fdb9fec532b19fac5fb5dab8728dfc34 1313 6c75a79d2acbf17107553316eed30563;92a9c7deec5c7fe45abcb1e3b9011cf0 SAMEA2553831 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600365/ERR600365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600365/ERR600365_2.fastq.gz 4536722 WGS GPS_ZA_767-sc-1950912 RANDOM 144601290;149666823 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600365/ERR600365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600365/ERR600365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600365/13415_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600365/13415_4#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600365/ERR600365_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600365/ERR600365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600365/13415_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600365/13415_4#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240996902;7442 ERS464332 ERX557194 GENOMIC 10631256 453672200 2014-09-16 SC_RUN_13415_4#55 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600365/13415_4#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600365/13415_4#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#55 ERR563980 SC_EXP_12754_4#37 232 490d5f803aafb4f5757feb2e47d15f43;320c649af2d4bf82c0ca8b6d9448651f 1313 afa289586784db19041456555adb240b;086494eb3aa0618ea7b0d3f9de54ba44 SAMEA2383247 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563980/ERR563980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563980/ERR563980_2.fastq.gz 4893868 WGS 2120452_II-sc-1870499 RANDOM 171615003;176340712 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563980/ERR563980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563980/ERR563980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563980/12754_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563980/12754_4#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563980/ERR563980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563980/ERR563980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563980/12754_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563980/12754_4#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 286653300;8000 ERS409572 ERX523005 GENOMIC 9922256 489386800 2014-07-16 SC_RUN_12754_4#37 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563980/12754_4#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563980/12754_4#37.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#37 ERR730287 SC_EXP_14520_5#54 224 74118214afa0083187b8a51707303126;a27ac5147909a0859b5ecb007ca0f5f1 1313 cda5d33e9914e0b9c6e91e0a8f1ec6b4;0df6f44d80664e638fefb18e517e8a32 SAMEA2696460 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730287/ERR730287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730287/ERR730287_2.fastq.gz 5131430 WGS GPS_GM_0667-sc-2021915 RANDOM 188678158;192300456 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730287/ERR730287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730287/ERR730287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730287/14520_5#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730287/14520_5#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730287/ERR730287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730287/ERR730287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730287/14520_5#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730287/14520_5#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313875175;8423 ERS525039 ERX674233 GENOMIC 11982906 513143000 2015-01-14 SC_RUN_14520_5#54 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730287/14520_5#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730287/14520_5#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#54 ERR501593 SC_EXP_12290_3#53 200 66abbd3e97df51c49e0f05ff8db16766;a022d706ea2809f21a0ff0a7510b5e1c 1313 c865b2fe457c75f7acdd9035ebb1ba0b;b8267370923d1f1dc704b045644dbd79 SAMEA2341300 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501593/ERR501593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501593/ERR501593_2.fastq.gz 3599542 WGS 556-sc-1811371 RANDOM 110303602;116720146 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501593/ERR501593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501593/ERR501593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501593/12290_3#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501593/12290_3#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501593/ERR501593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501593/ERR501593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501593/12290_3#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501593/12290_3#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 184973558;5853 ERS398971 ERX466950 GENOMIC 9467234 359954200 2014-05-12 SC_RUN_12290_3#53 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501593/12290_3#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501593/12290_3#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#53 ERR501567 SC_EXP_12290_3#27 200 542c3dac050446c5f1a35e83172783a6;152eb4eb1a6da45697f41c520714025b 1313 56a3e3d21b95a7b50fe06bd3332fe03c;5202ecc66eb10e5169a22c36df49cb36 SAMEA2341150 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501567/ERR501567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501567/ERR501567_2.fastq.gz 4124540 WGS D7638-sc-1811229 RANDOM 124282585;130009198 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501567/ERR501567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501567/ERR501567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501567/12290_3#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501567/12290_3#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501567/ERR501567_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501567/ERR501567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501567/12290_3#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501567/12290_3#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 206997165;6687 ERS398821 ERX466924 GENOMIC 9467207 412454000 2014-05-12 SC_RUN_12290_3#27 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501567/12290_3#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501567/12290_3#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#27 ERR064102 SC_EXP_6938_7#12 236 31fd74268cb8a8ca33091b12f367984a 1313 0e12a1b27eea504e2d18f3366618a4b5;09cb4c3644290775fcf949e1db486d96 SAMEA1028745 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064102/ERR064102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064102/ERR064102_2.fastq.gz 8538234 WGS SMRU2700-sc-2011-01-27-1062913 RANDOM 576755796;616659961 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064102/ERR064102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064102/ERR064102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064102/6938_7#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064102/ERR064102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064102/ERR064102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064102/6938_7#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1491000850 ERS022210 ERX042075 GENOMIC 3651720 1280735100 2012-03-19 SC_RUN_6938_7#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064102/6938_7#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR068260 SC_EXP_7004_3#17 245 2db7cc0ad39eb02d15821422423b37e1 1313 bfc61a3d703896ce2edbab8ec3448b4f;d7e9a616635bbfed99dce53d2383ec9d SAMEA1033570 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068260/ERR068260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068260/ERR068260_2.fastq.gz 1362000 WGS B18107-sc-2011-08-23T15:08:04Z-1261837 RANDOM 85281259;78470510 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068260/ERR068260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068260/ERR068260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068260/7004_3#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068260/ERR068260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068260/ERR068260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068260/7004_3#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 207970042 ERS050418 ERX046123 GENOMIC 3723372 204300000 2012-01-16 SC_RUN_7004_3#17 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068260/7004_3#17.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA080989 7004_3#17 ERR085969 SC_EXP_7068_2#17 241 1072a195204b00913316d771f9a390d3 1313 c0b64bcae9e602ed42d2826c6a165e8e;5e7c2bbaa7353af6a179fa3ef33faccd SAMEA1033570 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085969/ERR085969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085969/ERR085969_2.fastq.gz 2177163 WGS B18107-sc-2011-08-23T15:08:04Z-1261837 RANDOM 145537749;142017317 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085969/ERR085969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085969/ERR085969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR085/ERR085969/7068_2#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR085/ERR085969/ERR085969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR085/ERR085969/ERR085969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR085/ERR085969/7068_2#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 367079465 ERS050418 ERX063735 GENOMIC 3723372 326574450 2012-02-07 SC_RUN_7068_2#17 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR085/ERR085969/7068_2#17.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA087412 7004_3#17 ERR1764044 SC_EXP_20957_7#119 427 97d0bbab2fe8b040d9cf2a8a72e96856;011882ab5e7fe03fab0818df8b92e95e 1313 f9cc43cd37a8a640930b15bfabe02271;6d349182be7298e4c35283b7c88dbc66 SAMEA4392446 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/004/ERR1764044/ERR1764044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/004/ERR1764044/ERR1764044_2.fastq.gz 3325578 WGS f9a0a270-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 68361860;75235203 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/004/ERR1764044/ERR1764044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/004/ERR1764044/ERR1764044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764044/20957_7#119.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764044/20957_7#119.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/004/ERR1764044/ERR1764044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/004/ERR1764044/ERR1764044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764044/20957_7#119.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764044/20957_7#119.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103792671;5486 ERS1303895 ERX1829613 GENOMIC DN462612U:H3 415697250 2016-12-20 SC_RUN_20957_7#119 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764044/20957_7#119.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764044/20957_7#119.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#119 ERR1756409 SC_EXP_20925_3#24 435 7c012000ea6a2f4c98125d2b570fe38b;152b3c0bb0ab1c4400b3c762f68285a4 1313 79c82ad8ebca0ee3fa0b5b8e8b403834;2a87bbe494775323d07824924f46a44f SAMEA4035169 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/009/ERR1756409/ERR1756409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/009/ERR1756409/ERR1756409_2.fastq.gz 4715060 WGS 3abaa490-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 95800460;101569180 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/009/ERR1756409/ERR1756409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/009/ERR1756409/ERR1756409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756409/20925_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756409/20925_3#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/009/ERR1756409/ERR1756409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/009/ERR1756409/ERR1756409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756409/20925_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756409/20925_3#24.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 152470873;7712 ERS1206279 ERX1823429 GENOMIC DN461288B:H3 589382500 2016-12-13 SC_RUN_20925_3#24 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756409/20925_3#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756409/20925_3#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#24 ERR1764042 SC_EXP_20957_7#117 438 945eab0634aace26206c7ed84bc92292;566a714355ce53ca2e334d30e76ad8e7 1313 7c32c6fc49a89716f87ec673840e3f9c;3f5cbcfcedb2319d6b49e774d9cbf316 SAMEA4392445 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/002/ERR1764042/ERR1764042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/002/ERR1764042/ERR1764042_2.fastq.gz 3281108 WGS f97fd400-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 68171980;76841452 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/002/ERR1764042/ERR1764042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/002/ERR1764042/ERR1764042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764042/20957_7#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764042/20957_7#117.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/002/ERR1764042/ERR1764042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/002/ERR1764042/ERR1764042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764042/20957_7#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764042/20957_7#117.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 104537614;5337 ERS1303894 ERX1829611 GENOMIC DN462612U:F3 410138500 2016-12-20 SC_RUN_20957_7#117 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764042/20957_7#117.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764042/20957_7#117.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#117 ERR1430844 SC_EXP_19183_3#46 446 4835f7faed26eb99ee999b28f911b1d1;de1a53d114504df07b0cdbd266074faa 1313 627545df3072ba9864a08232d72ab953;08d85195f7939aa95309f883bdf7f6d7 SAMEA3447972 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1430844/ERR1430844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1430844/ERR1430844_2.fastq.gz 2574716 WGS GPS_GM_2234-sc-2296844 RANDOM 50642662;48185591 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1430844/ERR1430844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/004/ERR1430844/ERR1430844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430844/19183_3#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430844/19183_3#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1430844/ERR1430844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/004/ERR1430844/ERR1430844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430844/19183_3#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430844/19183_3#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70096275;4362 ERS745546 ERX1501222 GENOMIC 15923152 321839500 2016-06-01 SC_RUN_19183_3#46 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430844/19183_3#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430844/19183_3#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#46 ERR1065384 SC_EXP_17059_8#88 447 6dfc75f6f8ef79057d94aafa6873077d;0efef006e6ceee6d6e95a608a6291e0e 1313 b46f33bc9e21dfc682ec75e452dfc85d;7eb7af2fde15a67b00397de72c17bd26 SAMEA3353529 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065384/ERR1065384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065384/ERR1065384_2.fastq.gz 4654264 WGS GPS_ZA_carriage_SP1416-sc-2278129 RANDOM 78496535;81292008 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065384/ERR1065384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065384/ERR1065384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065384/17059_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065384/17059_8#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065384/ERR1065384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065384/ERR1065384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065384/17059_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065384/17059_8#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 128531434;7700 ERS707884 ERX1145534 GENOMIC 14406277 581783000 2015-10-13 SC_RUN_17059_8#88 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065384/17059_8#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065384/17059_8#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#88 ERR980317 SC_EXP_16288_8#44 202 4419acdca9d2586c6915e2225092f10e;303993bd3614b266ec9e65a1c6db6d51 1313 387ea7c9d7eb0bf01d3a6b23e526601c;581371514f144840445634d6e0dc39ef SAMEA3232810 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980317/ERR980317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980317/ERR980317_2.fastq.gz 3754982 WGS GPS_NP_1367-sc-2205722 RANDOM 129647510;127184326 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980317/ERR980317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980317/ERR980317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980317/16288_8#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980317/16288_8#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980317/ERR980317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980317/ERR980317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980317/16288_8#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980317/16288_8#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 207773504;6049 ERS654021 ERX1057189 GENOMIC 13301790 375498200 2015-08-12 SC_RUN_16288_8#44 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980317/16288_8#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980317/16288_8#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#44 ERR870241 SC_EXP_15531_6#49 212 881f8a841af768dfa0b6078dc85eb1ec;32ce5f9f33739cbd78f2cd5e53c9af1a 1313 4958de668670b2c7877b6b8cef5b6451;99b9c8830f3d8dc9562a720708689a36 SAMEA3172992 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870241/ERR870241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870241/ERR870241_2.fastq.gz 4687082 WGS GPS_GM_1136-sc-2190551 RANDOM 179409839;168575586 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870241/ERR870241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870241/ERR870241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870241/15531_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870241/15531_6#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870241/ERR870241_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870241/ERR870241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870241/15531_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870241/15531_6#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288645169;7538 ERS627235 ERX949842 GENOMIC 12870022 468708200 2015-05-06 SC_RUN_15531_6#49 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870241/15531_6#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870241/15531_6#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#49 ERR870157 SC_EXP_15531_5#60 214 d08f35d000e04b1aeff045bd1d716e4a;d70fde54368053adfcbe245434332048 1313 ff31216627b2b7d048ea227e971dd7af;d25986c55a8e63d89771f9d5ddefef50 SAMEA3172896 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870157/ERR870157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870157/ERR870157_2.fastq.gz 4652310 WGS GPS_GM_1040-sc-2190454 RANDOM 179130171;170755786 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870157/ERR870157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870157/ERR870157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870157/15531_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870157/15531_5#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870157/ERR870157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870157/ERR870157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870157/15531_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870157/15531_5#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291176777;7560 ERS627139 ERX949758 GENOMIC 12870934 465231000 2015-05-06 SC_RUN_15531_5#60 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870157/15531_5#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870157/15531_5#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#60 ERR870208 SC_EXP_15531_6#16 212 3835bbb204033df666054dbb20a31647;a70d97e6f68c3490a40aaf435aa35c0c 1313 099b121d5a119ab3f2aaf639050a7efd;5933a6d1ff31d7b63c16beb52a52774b SAMEA3172958 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870208/ERR870208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870208/ERR870208_2.fastq.gz 4500196 WGS GPS_GM_1102-sc-2190517 RANDOM 173087446;163888001 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870208/ERR870208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870208/ERR870208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870208/15531_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870208/15531_6#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870208/ERR870208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870208/ERR870208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870208/15531_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870208/15531_6#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279714640;7275 ERS627201 ERX949809 GENOMIC 12870101 450019600 2015-05-06 SC_RUN_15531_6#16 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870208/15531_6#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870208/15531_6#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#16 ERR774161 SC_EXP_14913_5#66 225 56fd2f1653e90cd2022c020abb003f35;f7fecd2e8e3cea98ef67629ab1694fd8 1313 51343d3a120c4ed3c26e965639184bae;ca2aad9cf93b388b8f3445ad081fb1c9 SAMEA2814466 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774161/ERR774161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774161/ERR774161_2.fastq.gz 4949768 WGS GPS_ZA_2678-sc-2138261 RANDOM 165640076;173193233 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774161/ERR774161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774161/ERR774161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774161/14913_5#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774161/14913_5#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774161/ERR774161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774161/ERR774161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774161/14913_5#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774161/14913_5#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277040450;7856 ERS566834 ERX717040 GENOMIC 12403387 494976800 2015-03-03 SC_RUN_14913_5#66 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774161/14913_5#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774161/14913_5#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#66 ERR750841 SC_EXP_14723_2#18 226 a2c3cf1dd1a868c75316bb6da017521c;78a1b6ac486d47b034424814d7aac589 1313 df6d91e1e82e9a47a13c51cc4688034b;76eb1121b1a76dca6f137d916acbf8e0 SAMEA2797091 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750841/ERR750841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750841/ERR750841_2.fastq.gz 5579248 WGS GPS_US_PATH3640-sc-2139118 RANDOM 205924174;209277758 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750841/ERR750841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750841/ERR750841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750841/14723_2#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750841/14723_2#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750841/ERR750841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750841/ERR750841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750841/14723_2#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750841/14723_2#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 345656868;8914 ERS558702 ERX694523 GENOMIC 12133594 557924800 2015-02-03 SC_RUN_14723_2#18 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750841/14723_2#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750841/14723_2#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#18 ERR750808 SC_EXP_14723_1#80 225 913a2084ec3ade6a27f77ce6920b7179;27db0a2fd0986c8e68e4ad6c7c46c9c9 1313 c2c4d5b40897781a71b052afd944094e;4e6897f9ba91c4b242e6899e74a432e9 SAMEA2797058 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750808/ERR750808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750808/ERR750808_2.fastq.gz 5316306 WGS GPS_US_PATH3604-sc-2139085 RANDOM 195415680;198173411 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750808/ERR750808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750808/ERR750808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750808/14723_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750808/14723_1#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750808/ERR750808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750808/ERR750808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750808/14723_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750808/14723_1#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325957269;8496 ERS558669 ERX694490 GENOMIC 12123439 531630600 2015-02-03 SC_RUN_14723_1#80 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750808/14723_1#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750808/14723_1#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#80 ERR742655 SC_EXP_14673_4#59 209 b8a94243cb0eab1d8eebdd8a5b09980d;05d4b0d4714510ba0e290156952717b9 1313 00ded76c5aaf57fb4c60b19ef43ddd8a;e25ed8bd21e2d213823b9e729a506465 SAMEA2796752 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742655/ERR742655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742655/ERR742655_2.fastq.gz 5170950 WGS GPS_US_2010216324_R1-sc-2138736 RANDOM 167933683;172543623 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742655/ERR742655_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742655/ERR742655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742655/14673_4#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742655/14673_4#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742655/ERR742655_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742655/ERR742655_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742655/14673_4#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742655/14673_4#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276452027;8210 ERS558363 ERX686338 GENOMIC 12062000 517095000 2015-01-27 SC_RUN_14673_4#59 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742655/14673_4#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742655/14673_4#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#59 ERR701865 SC_EXP_14257_1#88 234 f16790633abfb87fd958701c51f3520a;65044bf76f9a2994577fbb86b355534e 1313 598f3d49572f045c662164fe0bfcd84b;7da01724abef824a6f9ccaeb9b2bac47 SAMEA2658534 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701865/ERR701865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701865/ERR701865_2.fastq.gz 4999388 WGS GPS_ZA_1465-sc-2021139 RANDOM 157009961;159560581 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701865/ERR701865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701865/ERR701865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701865/14257_1#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701865/14257_1#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701865/ERR701865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701865/ERR701865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701865/14257_1#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701865/14257_1#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258763889;8248 ERS508562 ERX646128 GENOMIC 11814800 499938800 2014-12-16 SC_RUN_14257_1#88 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701865/14257_1#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701865/14257_1#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#88 ERR577950 SC_EXP_13091_6#7 242 288cab2e8f901acb7d9732bfc9bc71fd;614e3c64f73cd475ae0d1a64e4581189 1313 8627b6921ceda6b7001021b32b6b98b9;4c08dc59415d0191c5a40bc6830c01a4 SAMEA2467456 2014-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577950/ERR577950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577950/ERR577950_2.fastq.gz 4780464 WGS PATH3509-sc-1926241 RANDOM 164543183;166732457 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577950/ERR577950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577950/ERR577950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577950/13091_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577950/13091_6#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577950/ERR577950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577950/ERR577950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577950/13091_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577950/13091_6#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273510395;7898 ERS437213 ERX536126 GENOMIC 10228143 478046400 2014-08-12 SC_RUN_13091_6#7 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577950/13091_6#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577950/13091_6#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA346681 13091_6#7 ERR064196 SC_EXP_6949_3#10 256 6b86d41f05d7a1e735bcceb6d3aae1b7 1313 520a511a4f2c9ffdf966e5d19d85c0b3;09ada2976f5d4d286b7ef6dc02c83c1f SAMEA1028686 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064196/ERR064196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064196/ERR064196_2.fastq.gz 7627684 WGS SMRU2458-sc-2011-01-27-1062671 RANDOM 376630957;391422639 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064196/ERR064196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064196/ERR064196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064196/6949_3#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064196/ERR064196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064196/ERR064196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064196/6949_3#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 962681670 ERS021968 ERX042169 GENOMIC 3660737 1144152600 2012-03-19 SC_RUN_6949_3#10 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064196/6949_3#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064146 SC_EXP_6949_1#8 259 5e43f0660d816732c93e9c247a0ba075 1313 a08a4781b74ca596e0dfefa6a619b649;2bef72299f02f5890ad384a1d0542771 SAMEA1028799 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064146/ERR064146_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064146/ERR064146_2.fastq.gz 5371510 WGS SMRU2408-sc-2011-01-27-1062621 RANDOM 269337262;274113252 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064146/ERR064146_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064146/ERR064146_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064146/6949_1#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064146/ERR064146_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064146/ERR064146_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064146/6949_1#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 685553862 ERS021917 ERX042119 GENOMIC 3660684 805726500 2012-03-19 SC_RUN_6949_1#8 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064146/6949_1#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063839 SC_EXP_6899_5#6 184 8a3b540584450186e21f3267279cb744 1313 aaf1319bf129e8a6919286c7c788d3cf;c8d5b4ba43fabbe9057d66fa669056a2 SAMEA1025905 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063839/ERR063839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063839/ERR063839_2.fastq.gz 5547568 WGS SMRU2046-sc-2011-01-27-1062259 RANDOM 360962820;356841843 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063839/ERR063839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063839/ERR063839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063839/6899_5#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063839/ERR063839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063839/ERR063839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063839/6899_5#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 924107243 ERS021556 ERX041812 GENOMIC 3499972 832135200 2012-01-05 SC_RUN_6899_5#6 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063839/6899_5#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063855 SC_EXP_6899_5#22 184 aea032821fd089c2784404f9ec16dfa9 1313 08dcd126a3f765ac634aff7a7c4bda77;07da3c17466f198b2dd099a53a44c8bc SAMEA1026120 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063855/ERR063855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063855/ERR063855_2.fastq.gz 5565210 WGS SMRU2062-sc-2011-01-27-1062275 RANDOM 366026564;362388397 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063855/ERR063855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063855/ERR063855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063855/6899_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063855/ERR063855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063855/ERR063855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063855/6899_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 927184913 ERS021572 ERX041828 GENOMIC 3499988 834781500 2012-01-05 SC_RUN_6899_5#22 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063855/6899_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063827 SC_EXP_6899_4#18 190 1bff97348a7cc3c95c47d7143535c6e9 1313 34ece4aa202f074287426186723b9afd;fa3b681c8300446325c52b806e9258fa SAMEA1025824 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063827/ERR063827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063827/ERR063827_2.fastq.gz 3563483 WGS SMRU2034-sc-2011-01-27-1062247 RANDOM 229796884;224064610 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063827/ERR063827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063827/ERR063827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063827/6899_4#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063827/ERR063827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063827/ERR063827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063827/6899_4#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 583280626 ERS021544 ERX041800 GENOMIC 3499959 534522450 2012-01-05 SC_RUN_6899_4#18 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063827/6899_4#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063969 SC_EXP_6925_5#16 235 f2548e82619c8c2df370d6a13f231f42 1313 cdd550f92803dd3a755d38ac1b5b96db;1d441d0dda804001e9abd7027ad1ccce SAMEA1025929 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063969/ERR063969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063969/ERR063969_2.fastq.gz 4546744 WGS SMRU2176-sc-2011-01-27-1062389 RANDOM 281702096;279385295 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063969/ERR063969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063969/ERR063969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063969/6925_5#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063969/ERR063969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063969/ERR063969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063969/6925_5#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 714406010 ERS021686 ERX041942 GENOMIC 3610972 682011600 2012-01-05 SC_RUN_6925_5#16 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063969/6925_5#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048106 SC_EXP_6631_3#21 227 5b83d77f07577b515e2bf574c81eae7a 1313 201e4e761c80b1e625bab63b9ca298c2;527e766215131a078c0736db8201986a SAMEA1023897 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048106/ERR048106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048106/ERR048106_2.fastq.gz 3306316 WGS SMRU429-sc-2011-01-27-1060618 RANDOM 184877968;173241130 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048106/ERR048106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048106/ERR048106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048106/6631_3#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048106/ERR048106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048106/ERR048106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048106/6631_3#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 461923317 ERS019587 ERX025169 GENOMIC 2952216 495947400 2011-10-11 SC_RUN_6631_3#21 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048106/6631_3#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047988 SC_EXP_6630_2#23 233 357fdf0fbda0581ab81fa8ad073cf2c3 1313 8cecf32d84d3d9361a41037ee1bd9afc;5ae1587adf654fcc9c368b1cb97f579c SAMEA1024115 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047988/ERR047988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047988/ERR047988_2.fastq.gz 2349997 WGS SMRU311-sc-2011-01-27-1060500 RANDOM 140746723;141385954 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047988/ERR047988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047988/ERR047988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047988/6630_2#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047988/ERR047988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047988/ERR047988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047988/6630_2#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 357635696 ERS019469 ERX025051 GENOMIC 2952098 352499550 2011-10-11 SC_RUN_6630_2#23 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047988/6630_2#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048092 SC_EXP_6631_3#7 227 83429188592b2935649b548313d1c48a 1313 7be04d46c34caa6d9b7a224e0de17d6e;a29bc0a7285bba7903f167cf33798145 SAMEA1024039 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048092/ERR048092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048092/ERR048092_2.fastq.gz 3560234 WGS SMRU415-sc-2011-01-27-1060604 RANDOM 196920849;185497677 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048092/ERR048092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048092/ERR048092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048092/6631_3#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048092/ERR048092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048092/ERR048092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048092/6631_3#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 487055572 ERS019573 ERX025155 GENOMIC 2952202 534035100 2011-10-11 SC_RUN_6631_3#7 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048092/6631_3#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047987 SC_EXP_6630_2#22 233 313518e225fa5f38bba5a3c9a408d658 1313 ca014c70a1b4bda6b3874fc4d3fd3ae1;42e754a344105411bcb1046721823e19 SAMEA1024111 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047987/ERR047987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047987/ERR047987_2.fastq.gz 1919268 WGS SMRU310-sc-2011-01-27-1060499 RANDOM 117011527;117322912 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047987/ERR047987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047987/ERR047987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047987/6630_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047987/ERR047987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047987/ERR047987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047987/6630_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 297195127 ERS019468 ERX025050 GENOMIC 2952097 287890200 2011-10-11 SC_RUN_6630_2#22 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047987/6630_2#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054616 SC_EXP_6755_5#12 248 bd37fb9f9717014b41a68143f74c6f9f 1313 c30f9b6602c43e1fb476aa29e6068566;9b68ede9e398182ab6d5956af4069635 SAMEA1025199 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054616/ERR054616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054616/ERR054616_2.fastq.gz 9020695 WGS SMRU1164-sc-2011-01-27-1061377 RANDOM 480435169;499319958 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054616/ERR054616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054616/ERR054616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054616/6755_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054616/ERR054616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054616/ERR054616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054616/6755_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1232208167 ERS020674 ERX031662 GENOMIC 3307624 1353104250 2011-11-15 SC_RUN_6755_5#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054616/6755_5#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR057924 SC_EXP_6823_4#23 242 bb22446796a15aaabbcbfebdc2a95c5b 1313 f275df479534ab785c2ebd973809a075;1a456da39a0d93f1dd82972c23d647b7 SAMEA1025725 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057924/ERR057924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057924/ERR057924_2.fastq.gz 3830866 WGS SMRU1943-sc-2011-01-27-1062156 RANDOM 231444932;244952332 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057924/ERR057924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057924/ERR057924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057924/6823_4#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057924/ERR057924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057924/ERR057924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057924/6823_4#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 614247250 ERS021453 ERX035770 GENOMIC 3469172 574629900 2012-03-22 SC_RUN_6823_4#23 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057924/6823_4#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057875 SC_EXP_6823_2#22 245 4dadd56a52f48baaa6ea5274c22a2a45 1313 937a0f25fad7ec3b8173934916ad6a85;da2353640483addf44229212951e88af SAMEA1025845 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057875/ERR057875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057875/ERR057875_2.fastq.gz 9172409 WGS SMRU1894-sc-2011-01-27-1062107 RANDOM 557308388;577392561 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057875/ERR057875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057875/ERR057875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057875/6823_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057875/ERR057875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057875/ERR057875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057875/6823_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1434952856 ERS021404 ERX035721 GENOMIC 3469123 1375861350 2012-03-22 SC_RUN_6823_2#22 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057875/6823_2#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR051599 SC_EXP_6731_3#21 214 909fdea0c64fee3bbb854aedfdcc46cc 1313 2549e15ec34239973bf2f4e2fa90511c;489867eb872ca4025328d84267f1b887 SAMEA1024691 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051599/ERR051599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051599/ERR051599_2.fastq.gz 4244951 WGS SMRU1053-sc-2011-01-27-1061266 RANDOM 240905595;250292272 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051599/ERR051599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051599/ERR051599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051599/6731_3#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051599/ERR051599_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051599/ERR051599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051599/6731_3#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 619792434 ERS020563 ERX028647 GENOMIC 3246253 636742650 2011-11-02 SC_RUN_6731_3#21 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051599/6731_3#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR084196 SC_EXP_7038_5#18 251 99e61fe3f6ae742d790137b1f0385925 1313 5d5d70282e7fb5a5960c0f2dd2c15ed6;53293b341efdf859c6ff881fd01b888a SAMEA1029217 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084196/ERR084196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084196/ERR084196_2.fastq.gz 5738532 WGS SMRU2970-sc-2011-01-27-1063183 RANDOM 369560530;371042410 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084196/ERR084196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084196/ERR084196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084196/7038_5#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084196/ERR084196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084196/ERR084196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084196/7038_5#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1414880811 ERS022480 ERX061962 GENOMIC 3810465 860779800 2012-02-07 SC_RUN_7038_5#18 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084196/7038_5#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR084195 SC_EXP_7038_5#17 251 57893ec945f1aced4a016ba89a16d10c 1313 708e250612f8bb34358f05a6d603d40f;ca3c95d607d82d72de3b9d7dd5ad7243 SAMEA1029330 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084195/ERR084195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084195/ERR084195_2.fastq.gz 5060731 WGS SMRU2969-sc-2011-01-27-1063182 RANDOM 324798461;327152149 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084195/ERR084195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084195/ERR084195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084195/7038_5#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084195/ERR084195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084195/ERR084195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084195/7038_5#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1259535039 ERS022479 ERX061961 GENOMIC 3810464 759109650 2012-02-07 SC_RUN_7038_5#17 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084195/7038_5#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR052635 SC_EXP_6714_8#10 246 9902c8a59cb5e40f75c4021ea11ee5dc 1313 02fa188ff170a0459aaed29c9a924283;42e554e7d1822445ea9aacd2de29820a SAMEA1023843 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052635/ERR052635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052635/ERR052635_2.fastq.gz 4765100 WGS SMRU562-sc-2011-01-27-1060751 RANDOM 249254365;261920796 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052635/ERR052635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052635/ERR052635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052635/6714_8#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052635/ERR052635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052635/ERR052635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052635/6714_8#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 666832259 ERS019720 ERX029683 GENOMIC 3100040 714765000 2011-11-07 SC_RUN_6714_8#10 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052635/6714_8#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR060045 SC_EXP_6841_7#17 222 0ee831369b07985e2b83fab40866b5f3 1313 235def8859be349a8137be90038ef56d;a514b3f117d482d787eb7c43f30ccf96 SAMEA1025432 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060045/ERR060045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060045/ERR060045_2.fastq.gz 8176876 WGS SMRU1337-sc-2011-01-27-1061550 RANDOM 534022204;550982287 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060045/ERR060045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060045/ERR060045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060045/6841_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060045/ERR060045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060045/ERR060045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060045/6841_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1379253319 ERS020847 ERX037883 GENOMIC 3348795 1226531400 2011-12-13 SC_RUN_6841_7#17 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060045/6841_7#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR2305535 SC_EXP_22984_8#73 354 c251682792638a53fa285edaa83b83e8;43c07a8e16f02fb12f22ae1d01176083 1313 b3e196e82b1424e7b1d576576a07bf7e;410fd1f332a6ae022ecd56f26050f796 SAMEA104035043 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305535/ERR2305535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305535/ERR2305535_2.fastq.gz 2052014 WGS 03e24e10-13c4-11e7-942b-3c4a9275d6c8 RANDOM 58636645;76899713 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305535/ERR2305535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305535/ERR2305535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305535/22984_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305535/22984_8#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305535/ERR2305535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305535/ERR2305535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305535/22984_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305535/22984_8#73.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 97960711;3442 ERS1698936 ERX2356845 GENOMIC DN483712O:A10 309854114 2018-02-16 SC_RUN_22984_8#73 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305535/22984_8#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305535/22984_8#73.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809012 ERR2305260 SC_EXP_22695_3#219 419 b3c50692a00f276c5202b6e6ae20c3db;d8042cba6eb27fc02268545289eff3da 1313 093b6deb4b91a693403cb865883e8ffc;2bfbb9d4f737375dc4a655258b3e70a5 SAMEA104034903 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305260/ERR2305260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305260/ERR2305260_2.fastq.gz 2340660 WGS fb49fcd0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61438843;83727647 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305260/ERR2305260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305260/ERR2305260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305260/22695_3#219.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305260/22695_3#219.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305260/ERR2305260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305260/ERR2305260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305260/22695_3#219.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305260/22695_3#219.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105650549;3966 ERS1698796 ERX2356570 GENOMIC DN477146R:E4 353439660 2018-02-16 SC_RUN_22695_3#219 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305260/22695_3#219.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305260/22695_3#219.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808871 ERR2305219 SC_EXP_22695_3#178 416 19999221f9f3ef2ecac75e4dd0ed114c;f09d2e0f80c014fb1e706f56d5e6e3db 1313 e3e37013fbfd5b9f25371c3a33e7d779;17f769f78d2c5c2295b784e0ed5dd2c8 SAMEA104034767 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305219/ERR2305219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305219/ERR2305219_2.fastq.gz 2252312 WGS eebd66f0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61867198;82911671 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305219/ERR2305219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305219/ERR2305219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305219/22695_3#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305219/22695_3#178.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305219/ERR2305219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305219/ERR2305219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305219/22695_3#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305219/22695_3#178.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105782510;3782 ERS1698660 ERX2356529 GENOMIC DN477141M:C11 340099112 2018-02-16 SC_RUN_22695_3#178 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305219/22695_3#178.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305219/22695_3#178.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808733 ERR2305209 SC_EXP_22695_3#168 431 ffba3a40b14a0b5f0929f9c32d0820e4;f325427593941162fc2d2744bc437673 1313 929df7cfa2a1aad00b1614c0bf4e3991;675d3c93bfbfc63dcd1008d476cd3539 SAMEA104034757 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305209/ERR2305209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305209/ERR2305209_2.fastq.gz 2211644 WGS ee480fe0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 60580750;80674506 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305209/ERR2305209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305209/ERR2305209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305209/22695_3#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305209/22695_3#168.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305209/ERR2305209_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305209/ERR2305209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305209/22695_3#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305209/22695_3#168.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102955654;3749 ERS1698650 ERX2356519 GENOMIC DN477141M:A10 333958244 2018-02-16 SC_RUN_22695_3#168 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305209/22695_3#168.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305209/22695_3#168.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808723 ERR2091139 SC_EXP_22841_4#30 407 b0d0b2253bf3ee6531e2a25d5c1b28ad;c3f095511bd68d630621363d426ab00e 1313 2fdfb5ab41affaf60a38ab7cede3ebdd;41e12216162053893071e9be2cb7ddf8 SAMEA104035336 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091139/ERR2091139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091139/ERR2091139_2.fastq.gz 3075570 WGS 98236070-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60773637;65316088 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091139/ERR2091139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091139/ERR2091139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091139/22841_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091139/22841_4#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091139/ERR2091139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091139/ERR2091139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091139/22841_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091139/22841_4#30.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89490519;5052 ERS1699229 ERX2147933 GENOMIC DN477152P:F4 384446250 2017-08-08 SC_RUN_22841_4#30 100 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091139/22841_4#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091139/22841_4#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#30 ERR1947802 SC_EXP_21946_6#282 439 d36394d03cf33f810cd139ee50687dc2;ee60b4de87891516eb409dc684ce1ac3 1313 ca4b9220877d4505046cc364e16373bd;2aa59779ba1b8b9961fbc24030664f4d SAMEA4561098 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947802/ERR1947802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947802/ERR1947802_2.fastq.gz 2092134 WGS 0aad3270-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53749734;73829695 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947802/ERR1947802_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947802/ERR1947802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947802/21946_6#282.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947802/21946_6#282.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947802/ERR1947802_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947802/ERR1947802_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947802/21946_6#282.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947802/21946_6#282.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92931304;3565 ERS1460277 ERX2013589 GENOMIC 18471534 315912234 2017-04-25 SC_RUN_21946_6#282 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947802/21946_6#282.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947802/21946_6#282.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947784 SC_EXP_21946_6#264 456 565d676ace23d693c12382c5b20ccea5;df57185c269e4649a93af992cab9f39d 1313 7ed5f474663852589753687e73bd86d5;8112973e26acfeb63dd7ecfdcd84ac2e SAMEA4561080 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947784/ERR1947784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947784/ERR1947784_2.fastq.gz 2524706 WGS 0a1b52b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 64158564;90603734 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947784/ERR1947784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947784/ERR1947784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947784/21946_6#264.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947784/21946_6#264.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947784/ERR1947784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947784/ERR1947784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947784/21946_6#264.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947784/21946_6#264.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 113692380;4274 ERS1460259 ERX2013571 GENOMIC 18471373 381230606 2017-04-25 SC_RUN_21946_6#264 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947784/21946_6#264.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947784/21946_6#264.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947444 SC_EXP_21903_8#290 448 25051f90cf7b50e2a3ec24b298564182;b48d134ce453902b0959e3ab7b8fd919 1313 ead817d6d59eeaa28dfc63695bf8000d;3f681ba7fe006f09e810354f50de9828 SAMEA4561472 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947444/ERR1947444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947444/ERR1947444_2.fastq.gz 2316922 WGS 2d95f6f0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 56266354;84977182 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947444/ERR1947444_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947444/ERR1947444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947444/21903_8#290.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947444/21903_8#290.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947444/ERR1947444_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947444/ERR1947444_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947444/21903_8#290.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947444/21903_8#290.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104564272;3973 ERS1460651 ERX2013231 GENOMIC 18453228 349855222 2017-04-25 SC_RUN_21903_8#290 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947444/21903_8#290.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947444/21903_8#290.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947242 SC_EXP_21903_8#88 399 6071b60b65917c408f7be5a5f7c172cd;0ef87b66b8e4c66703c45a5fa1817096 1313 bccce5dedca699b15b0e70ccdc731415;eb0406534f678f2d085ea5ecade484cc SAMEA4561268 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947242/ERR1947242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947242/ERR1947242_2.fastq.gz 2808718 WGS 1ae62e80-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 69596528;99030533 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947242/ERR1947242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947242/ERR1947242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947242/21903_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947242/21903_8#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947242/ERR1947242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947242/ERR1947242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947242/21903_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947242/21903_8#88.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 122869940;4646 ERS1460447 ERX2013029 GENOMIC 18430283 424116418 2017-04-25 SC_RUN_21903_8#88 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947242/21903_8#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947242/21903_8#88.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1192022 SC_EXP_17794_8#11 441 3087c3ba6057771448798de2fc3615e6;2b8c94a113218939de6cfcdd688096f3 1313 10fabc48da9d8e975cc2986992ebeb7b;c86f571c87a636fdfae37a5581a92649 SAMEA3381487 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192022/ERR1192022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192022/ERR1192022_2.fastq.gz 2408008 WGS GPS_GM_2042-sc-2279365 RANDOM 46167436;47857590 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192022/ERR1192022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192022/ERR1192022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192022/17794_8#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192022/17794_8#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192022/ERR1192022_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192022/ERR1192022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192022/17794_8#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192022/17794_8#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72945993;4105 ERS719746 ERX1265406 GENOMIC 14941556 301001000 2015-12-17 SC_RUN_17794_8#11 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192022/17794_8#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192022/17794_8#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#11 ERR1066016 SC_EXP_17175_5#4 463 bd3aa8cd69237cb04247de612532b26d;e97d292237e6b3ad1dcb7030116ef85f 1313 9e03b12d6f8e3ac09523f7f9aafc83ee;5f2dc1309936ebf63968d73d471d4724 SAMEA3353726 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066016/ERR1066016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066016/ERR1066016_2.fastq.gz 6289048 WGS GPS_ZA_carriage_SP1614-sc-2278328 RANDOM 120496820;122223903 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066016/ERR1066016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066016/ERR1066016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066016/17175_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066016/17175_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066016/ERR1066016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066016/ERR1066016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066016/17175_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066016/17175_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 190486601;10370 ERS708081 ERX1146166 GENOMIC 14423426 786131000 2015-10-13 SC_RUN_17175_5#4 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066016/17175_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066016/17175_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#4 ERR1065971 SC_EXP_17175_4#52 467 6ebc60097caece734a5ac2b4ba2c5aae;36c32825e0ccad3d1833c1c164710a03 1313 cee3d0a72e2540c07b788c29adbb7cf7;783d3e550edaa3b08eb765f563a3f17c SAMEA3353449 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065971/ERR1065971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065971/ERR1065971_2.fastq.gz 4600098 WGS GPS_ZA_carriage_SP1477-sc-2278049 RANDOM 83833503;86424777 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065971/ERR1065971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065971/ERR1065971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065971/17175_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065971/17175_4#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065971/ERR1065971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065971/ERR1065971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065971/17175_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065971/17175_4#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 130390884;7601 ERS707804 ERX1146121 GENOMIC 14436339 575012250 2015-10-13 SC_RUN_17175_4#52 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065971/17175_4#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065971/17175_4#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#52 ERR997682 SC_EXP_16399_7#61 213 3bfb9439ecfa2e042cc310931b9a8b10;07d9a5ce4a4a972092866c06d2a2c040 1313 1464c3519309d4f573392422aab69198;8a5d6277887e3d96f34f6252c2d8455f SAMEA3309734 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997682/ERR997682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997682/ERR997682_2.fastq.gz 5579518 WGS GPS_GM_1752-sc-2206548 RANDOM 192600039;200861581 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997682/ERR997682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997682/ERR997682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997682/16399_7#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997682/16399_7#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997682/ERR997682_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997682/ERR997682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997682/16399_7#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997682/16399_7#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 321094345;8907 ERS686196 ERX1076718 GENOMIC 13843404 557951800 2015-09-04 SC_RUN_16399_7#61 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997682/16399_7#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997682/16399_7#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#61 ERR980083 SC_EXP_16288_5#45 218 f83fa2afecf266c9416adee2caafb22a;d63b7a375e71443a1f1d9a96e7efe015 1313 bec17c77665613c14e55140ebe163ec4;76b9d22dded4cf7b13d0a2c1292705d8 SAMEA3232554 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980083/ERR980083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980083/ERR980083_2.fastq.gz 4779806 WGS GPS_NP_4179-sc-2205472 RANDOM 165422326;165883747 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980083/ERR980083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980083/ERR980083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980083/16288_5#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980083/16288_5#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980083/ERR980083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980083/ERR980083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980083/16288_5#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980083/16288_5#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269872070;7548 ERS653765 ERX1056955 GENOMIC 13296383 477980600 2015-08-12 SC_RUN_16288_5#45 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980083/16288_5#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980083/16288_5#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#45 ERR862399 SC_EXP_15378_3#46 191 c3fd8703c8e152a4483936a291c460e0;19554c324a9d53e0dd1feeb53093ec6f 1313 7f5bcfd285abb53323d464dc8ec98ffa;564cb37c0ed1b8443c133004de341f2e SAMEA3171081 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862399/ERR862399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862399/ERR862399_2.fastq.gz 5490206 WGS GPS_MW_1349-sc-2139643 RANDOM 189790357;194791701 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862399/ERR862399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862399/ERR862399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862399/15378_3#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862399/15378_3#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862399/ERR862399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862399/ERR862399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862399/15378_3#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862399/15378_3#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 316382286;8802 ERS625472 ERX942049 GENOMIC 12815451 549020600 2015-04-21 SC_RUN_15378_3#46 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862399/15378_3#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862399/15378_3#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#46 ERR774247 SC_EXP_14913_6#58 223 9df2813ee1bc19d204465798e8bf40e4;24c68c661220ba3d3311f8dccbf49c5e 1313 2b4cfbd8164e2da276d547c3f4060cf3;60dd22a1fb00201c6a66c36fd22ec6f9 SAMEA2814553 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774247/ERR774247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774247/ERR774247_2.fastq.gz 4397244 WGS GPS_ZA_2754-sc-2138349 RANDOM 137947106;144458201 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774247/ERR774247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774247/ERR774247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774247/14913_6#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774247/14913_6#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774247/ERR774247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774247/ERR774247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774247/14913_6#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774247/14913_6#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 228395013;7052 ERS566921 ERX717126 GENOMIC 12334815 439724400 2015-03-03 SC_RUN_14913_6#58 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774247/14913_6#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774247/14913_6#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#58 ERR773988 SC_EXP_14913_3#80 225 433a5775272ed3d19ac2474eaae6e812;3a5ca6628b510819740a262b22a7ef85 1313 9dfd82a86db3607b0627e2963946e6f6;f67837ce3bd78aa7f721a61267db9d94 SAMEA2814088 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773988/ERR773988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773988/ERR773988_2.fastq.gz 4234676 WGS GPS_ZA_2217-sc-2022572 RANDOM 143202949;149303181 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773988/ERR773988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773988/ERR773988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773988/14913_3#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773988/14913_3#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773988/ERR773988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773988/ERR773988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773988/14913_3#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773988/14913_3#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238887497;6793 ERS566456 ERX716867 GENOMIC 12346003 423467600 2015-03-03 SC_RUN_14913_3#80 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773988/14913_3#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773988/14913_3#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#80 ERR730636 SC_EXP_14555_4#66 208 64a7e18717321859aafa423342dc361e;428da54487986729b986fe6f38d4dc12 1313 44df142560d62c70f8653dbded4f7b03;7326eb228093560ce30226626bb9aec4 SAMEA2659048 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730636/ERR730636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730636/ERR730636_2.fastq.gz 3244648 WGS GPS_ZA_2108-sc-2021686 RANDOM 98246636;101604665 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730636/ERR730636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730636/ERR730636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730636/14555_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730636/14555_4#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730636/ERR730636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730636/ERR730636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730636/14555_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730636/14555_4#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164249597;5359 ERS509076 ERX674582 GENOMIC 11814920 324464800 2015-01-14 SC_RUN_14555_4#66 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730636/14555_4#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730636/14555_4#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#66 ERR730345 SC_EXP_14520_6#17 215 8c55ed5c869694badd5e05e979c4ee7b;faffe63e0ee67a433060da3f5ce2ebfa 1313 cdbda676e4dd8fc016dd61f5e3c91e37;1301da693ec42b94bb5e3d4e213a43ad SAMEA2696435 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730345/ERR730345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730345/ERR730345_2.fastq.gz 5205868 WGS GPS_GM_0725-sc-2021890 RANDOM 192835406;196434279 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730345/ERR730345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730345/ERR730345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730345/14520_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730345/14520_6#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730345/ERR730345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730345/ERR730345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730345/14520_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730345/14520_6#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320923613;8412 ERS525014 ERX674291 GENOMIC 11983289 520586800 2015-01-14 SC_RUN_14520_6#17 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730345/14520_6#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730345/14520_6#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#17 ERR662300 SC_EXP_13670_3#20 250 cbd7a73de300ce71eda8ff29512e8b86;43aad96d0318121205beec905a35d83d 1313 3235a89d40b7a2494f71b14314ca73d6;7e8250f9e738150dafcbbfc20c237761 SAMEA2467331 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662300/ERR662300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662300/ERR662300_2.fastq.gz 4524234 WGS PATH3128-sc-1926114 RANDOM 153951639;153488854 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662300/ERR662300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662300/ERR662300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662300/13670_3#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662300/13670_3#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662300/ERR662300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662300/ERR662300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662300/13670_3#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662300/13670_3#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255250886;7419 ERS437088 ERX618576 GENOMIC 10791107 452423400 2014-10-28 SC_RUN_13670_3#20 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662300/13670_3#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662300/13670_3#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13670_3#20 ERR701827 SC_EXP_14257_1#50 234 3c053af6d08be32dc69d04116105d76b;81acfc4e17dc401831cd0a0c4169f119 1313 c80313b5da76cfaac8076f6c0e512fd0;69725ba76b42493bfd76534d066004e6 SAMEA2658413 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701827/ERR701827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701827/ERR701827_2.fastq.gz 4874482 WGS GPS_ZA_1427-sc-2021018 RANDOM 156507841;158519784 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701827/ERR701827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701827/ERR701827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701827/14257_1#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701827/14257_1#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701827/ERR701827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701827/ERR701827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701827/14257_1#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701827/14257_1#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258221761;7920 ERS508441 ERX646090 GENOMIC 11814724 487448200 2014-12-16 SC_RUN_14257_1#50 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701827/14257_1#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701827/14257_1#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#50 ERR460930 SC_EXP_11860_4#14 217 c4061b9178429aee89ba2765a2a30b01;1d291221ad4090a6b22680e5e155b983 1313 1a6f8c8419761288a1b8ce8329d740c4;b5b2a3e0b62311ae40c558277b40326e SAMEA2238289 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460930/ERR460930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460930/ERR460930_2.fastq.gz 4899762 WGS 2060818-sc-2013-11-05T11:54:03Z-1749647 RANDOM 157474276;166828279 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460930/ERR460930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460930/ERR460930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460930/11860_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460930/11860_4#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460930/ERR460930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460930/ERR460930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460930/11860_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460930/11860_4#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 266544823;7996 ERS367101 ERX427271 GENOMIC 9012497 489976200 2014-03-18 SC_RUN_11860_4#14 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460930/11860_4#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460930/11860_4#14.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR449226 SC_EXP_11826_1#39 238 d6ec2753463aaa2a5bed01dd97cce651;93b89c994ec336bd8c072cd4a9b97230 1313 d8945f5741233aee702fb748209328b9;5acaee1aedef433f3f93fa861b5c8910 SAMEA2143251 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449226/ERR449226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449226/ERR449226_2.fastq.gz 4174232 WGS 0602_99-sc-2013-07-03T13:33:03Z-1659311 RANDOM 133341831;135931281 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449226/ERR449226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449226/ERR449226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449226/11826_1#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449226/11826_1#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449226/ERR449226_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449226/ERR449226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449226/11826_1#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449226/11826_1#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 219095834;6923 ERS322484 ERX415598 GENOMIC 8949170 417423200 2014-03-04 SC_RUN_11826_1#39 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449226/11826_1#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449226/11826_1#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#39 ERR338220 SC_EXP_10071_4#56 215 666ee9cff165e00dc5da0ac9b73bcb08 1313 339a0b3db25b7075bc22c480195276cd;9b26932e5d64cdcc33b401eeabe02efa SAMEA2059404 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338220/ERR338220_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338220/ERR338220_2.fastq.gz 1774913 WGS PBCN0356-sc-2013-03-27T13:20:03Z-1603680 RANDOM 116188874;120838545 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338220/ERR338220_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338220/ERR338220_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338220/10071_4#56.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338220/ERR338220_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338220/ERR338220_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338220/10071_4#56.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 325386633 ERS225814 ERX311125 GENOMIC 7400570 354982600 2013-09-03 SC_RUN_10071_4#56 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338220/10071_4#56.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#56 ERR433951 SC_EXP_11658_8#10 250 bf424bbabc3f6296544fb9c62dc7c42d;1b10629797bc710ef7660c9c5f6fe423 1313 a1cb06cd74099847cf6ebb53e0e758f7;e0ab9a9e8d771cc337358a32ec24c72f SAMEA2204189 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433951/ERR433951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433951/ERR433951_2.fastq.gz 4258376 WGS PATH3387-sc-2013-10-09T11:56:58Z-1712782 RANDOM 139288793;139719349 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433951/ERR433951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433951/ERR433951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433951/11658_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433951/11658_8#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433951/ERR433951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433951/ERR433951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433951/11658_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433951/11658_8#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226773752;6985 ERS356700 ERX400226 GENOMIC 8647203 425837600 2014-02-18 SC_RUN_11658_8#10 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433951/11658_8#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433951/11658_8#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_8#10 ERR129214 SC_EXP_7622_5#94 225 f836a237e8448bb87b1e7cafeed9ef92 1313 079d28ef87dcc0ed440197727fb5149f;cbbd4fab3ad6e79031f05e960840b258 SAMEA1463049 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129214/ERR129214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129214/ERR129214_2.fastq.gz 2701445 WGS ND6103-sc-2011-11-08T10:08:41Z-1298473 RANDOM 287292525;296000846 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129214/ERR129214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129214/ERR129214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129214/7622_5#94.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129214/ERR129214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129214/ERR129214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129214/7622_5#94.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 565157926 ERS070105 ERX105355 GENOMIC 4336623 540289000 2012-05-28 SC_RUN_7622_5#94 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129214/7622_5#94.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129154 SC_EXP_7622_4#34 221 5d9f4bdf5a2d607b6253df3b8ba06340 1313 d6821a648f87d938f12df7db06cf6679;cf8dc2dfc91eeae6561948acaed36a70 SAMEA1463267 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129154/ERR129154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129154/ERR129154_2.fastq.gz 2367998 WGS LE4111-sc-2011-11-08T10:07:56Z-1298413 RANDOM 255109481;260718260 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129154/ERR129154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129154/ERR129154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129154/7622_4#34.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129154/ERR129154_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129154/ERR129154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129154/7622_4#34.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 501310032 ERS070045 ERX105295 GENOMIC 4336563 473599600 2012-05-28 SC_RUN_7622_4#34 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129154/7622_4#34.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124302 SC_EXP_7553_5#86 207 a5e4ee062fba2c871a990ebba1a57669 1313 1ce68faf0813cc7070b046218290654a;6a08d50aa000379ff6ae1bacdaca1f9e SAMEA1463116 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124302/ERR124302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124302/ERR124302_2.fastq.gz 3714600 WGS PT8072-sc-2011-11-08T10:09:47Z-1298561 RANDOM 391153680;409463165 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124302/ERR124302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124302/ERR124302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124302/7553_5#86.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124302/ERR124302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124302/ERR124302_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124302/7553_5#86.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 791779884 ERS070193 ERX100484 GENOMIC 4383205 742920000 2012-05-09 SC_RUN_7553_5#86 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124302/7553_5#86.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR124298 SC_EXP_7553_5#82 207 006547a8d69932faefe735886fd68826 1313 66c1c0f57480896f4ff9eae71109d99f;58814d25f5d18643c155c7dfd087da8a SAMEA1463284 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124298/ERR124298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124298/ERR124298_2.fastq.gz 10094297 WGS PT8063-sc-2011-11-08T10:09:44Z-1298557 RANDOM 1063027750;1122777451 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124298/ERR124298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124298/ERR124298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124298/7553_5#82.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124298/ERR124298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124298/ERR124298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124298/7553_5#82.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 2147541675 ERS070189 ERX100480 GENOMIC 4383201 2018859400 2012-05-09 SC_RUN_7553_5#82 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124298/7553_5#82.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR047949 SC_EXP_6630_1#8 215 2706108290760f08479e47d2019fb373 1313 9f9423fe9fbd17031515b19460214e11;6a47d3ccd14bb296a3008d54aa68d0a9 SAMEA1023869 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047949/ERR047949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047949/ERR047949_2.fastq.gz 3380213 WGS SMRU272-sc-2011-01-27-1060461 RANDOM 202297711;204443983 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047949/ERR047949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047949/ERR047949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047949/6630_1#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047949/ERR047949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047949/ERR047949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047949/6630_1#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 518894916 ERS019430 ERX025012 GENOMIC 2952059 507031950 2011-10-11 SC_RUN_6630_1#8 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047949/6630_1#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR084194 SC_EXP_7038_5#16 251 85b769f0f3007a11c5015e2bf7f68377 1313 db2abdcbd6a8cb9edfad07a6416a95b1;9376fd27b48ce0e053323bfa96b6a00a SAMEA1029341 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084194/ERR084194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084194/ERR084194_2.fastq.gz 7584976 WGS SMRU2968-sc-2011-01-27-1063181 RANDOM 483586480;487797307 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084194/ERR084194_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084194/ERR084194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084194/7038_5#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084194/ERR084194_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084194/ERR084194_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084194/7038_5#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1891837231 ERS022478 ERX061960 GENOMIC 3810462 1137746400 2012-02-07 SC_RUN_7038_5#16 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084194/7038_5#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR056699 SC_EXP_6775_1#17 207 f42557b3cdea9632a29a96ec1f1643f3 1313 ad4023c5290d386fc3e4fc9d2af1afc3;1ea79f400932831b86181296c9def376 SAMEA1024781 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056699/ERR056699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056699/ERR056699_2.fastq.gz 4936530 WGS SMRU833-sc-2011-01-27-1061022 RANDOM 312472119;329678495 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056699/ERR056699_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056699/ERR056699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056699/6775_1#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056699/ERR056699_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056699/ERR056699_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056699/6775_1#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 816317094 ERS020343 ERX034543 GENOMIC 3152354 740479500 2011-11-29 SC_RUN_6775_1#17 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056699/6775_1#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR046136 SC_EXP_6512_4#17 241 e63208945b18ffc04c0d5e03b5cc2c13 1313 2feb06e5beddafbf37b5eeac2db83efd;8e6e877cd2e5f24eb10ae607d558f9cf SAMEA1026698 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046136/ERR046136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046136/ERR046136_2.fastq.gz 7811280 WGS UoS3301-sc-2011-02-14-1078365 RANDOM 409312139;403138259 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046136/ERR046136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046136/ERR046136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046136/6512_4#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046136/ERR046136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046136/ERR046136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046136/6512_4#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1015543599 ERS023311 ERX023198 GENOMIC 2734983 1171692000 2011-09-20 SC_RUN_6512_4#17 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046136/6512_4#17.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_4#17 ERR046118 SC_EXP_6512_3#23 204 4bb4a79aa786744c257f5b2197b5ad21 1313 ce05a36727e38ee48199d48a6d36927c;c992e6cca35f8cf9ad3bb921c356df80 SAMEA1026827 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046118/ERR046118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046118/ERR046118_2.fastq.gz 6164205 WGS UoS3252-sc-2011-02-14-1078347 RANDOM 368621587;371991452 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046118/ERR046118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046118/ERR046118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046118/6512_3#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046118/ERR046118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046118/ERR046118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046118/6512_3#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 947213484 ERS023293 ERX023180 GENOMIC 2734322 924630750 2011-09-20 SC_RUN_6512_3#23 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046118/6512_3#23.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#23 ERR045370 SC_EXP_6486_5#21 228 1944edefa32174f53ec4f1e8a8c480fc 1313 3c9c0baffb4df18301b316e26daabfb5;1ec891c5d735dc7ad6dfe3512e9ce124 SAMEA1026709 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045370/ERR045370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045370/ERR045370_2.fastq.gz 7897629 WGS UoS4339-sc-2011-02-14-1078459 RANDOM 418187103;427263654 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045370/ERR045370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045370/ERR045370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045370/6486_5#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045370/ERR045370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045370/ERR045370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045370/6486_5#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1084738977 ERS023405 ERX022432 GENOMIC 2744974 1184644350 2011-09-14 SC_RUN_6486_5#21 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045370/6486_5#21.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_5#21 ERR2090770 SC_EXP_22841_2#39 403 df97c8d284c9393413605df33be20e53;9c57db2760626f260afefa87d18cd13f 1313 58e331b27c58eb1ab5a2687a2a765d8a;b9b9f09a8389f5495ff32e4180b7f944 SAMEA104035618 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090770/ERR2090770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090770/ERR2090770_2.fastq.gz 2701590 WGS b10305a0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60530960;63511400 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090770/ERR2090770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090770/ERR2090770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090770/22841_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090770/22841_2#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090770/ERR2090770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090770/ERR2090770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090770/22841_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090770/22841_2#39.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87305252;4465 ERS1699511 ERX2147564 GENOMIC DN483653U:G5 337698750 2017-08-08 SC_RUN_22841_2#39 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090770/22841_2#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090770/22841_2#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#39 ERR2091285 SC_EXP_22841_4#176 364 80a43163defbac13a673362fef477a91;bac2c94bc8a7793c8f237dd74f18e0ea 1313 be758eba56daa5a47df11f784672b31f;82b6bcc965287df199b8e245b0daaf20 SAMEA104035483 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091285/ERR2091285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091285/ERR2091285_2.fastq.gz 3293900 WGS a25600c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 64388079;68485437 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091285/ERR2091285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2091285/ERR2091285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091285/22841_4#176.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091285/22841_4#176.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091285/ERR2091285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2091285/ERR2091285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091285/22841_4#176.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091285/22841_4#176.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92615350;5408 ERS1699376 ERX2148079 GENOMIC DN477153Q:B11 411737500 2017-08-08 SC_RUN_22841_4#176 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091285/22841_4#176.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091285/22841_4#176.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#176 ERR2090706 SC_EXP_22841_1#165 422 9c244a7382cc538baf9de2244e102acb;fb42b6ca1d5cc82a27d3cf50754c03b9 1313 513988aea99cdefe1451fa59a6db3333;392121b33b18ff494b1080b3368aed83 SAMEA104035551 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090706/ERR2090706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090706/ERR2090706_2.fastq.gz 2611392 WGS a96519f0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49613594;53670673 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090706/ERR2090706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090706/ERR2090706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090706/22841_1#165.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090706/22841_1#165.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090706/ERR2090706_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090706/ERR2090706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090706/22841_1#165.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090706/22841_1#165.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71711490;4330 ERS1699444 ERX2147500 GENOMIC DN477156T:F9 326424000 2017-08-08 SC_RUN_22841_1#165 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090706/22841_1#165.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090706/22841_1#165.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#165 ERR2090674 SC_EXP_22841_1#133 436 0c97c6b54c3973aa9bc65fc2f4f4ebd3;03e93150bcadc0ebedd6be7fda3f1a94 1313 81b45b5b7a0d4132de07d750a60e6577;c4db3a8ad235740f58c4584753fd0986 SAMEA104035519 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090674/ERR2090674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090674/ERR2090674_2.fastq.gz 2716254 WGS a7e61b10-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 52425009;57366196 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090674/ERR2090674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090674/ERR2090674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090674/22841_1#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090674/22841_1#133.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090674/ERR2090674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090674/ERR2090674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090674/22841_1#133.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090674/22841_1#133.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76186283;4507 ERS1699412 ERX2147468 GENOMIC DN477156T:F5 339531750 2017-08-08 SC_RUN_22841_1#133 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090674/22841_1#133.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090674/22841_1#133.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#133 ERR2090409 SC_EXP_22667_7#137 456 36d433f55ac038b204a583a0064fd583;1f61ae985caa25428bdce6e95e9271ae 1313 19b0e0ac1058dfaf9ca1a5b06aa53b49;a28bbdce17bebd04103c09c0bbf22608 SAMEA104035133 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090409/ERR2090409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090409/ERR2090409_2.fastq.gz 2762468 WGS 8763cf40-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 56115260;61048064 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090409/ERR2090409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2090409/ERR2090409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090409/22667_7#137.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090409/22667_7#137.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090409/ERR2090409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2090409/ERR2090409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090409/22667_7#137.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090409/22667_7#137.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83235413;4548 ERS1699026 ERX2147203 GENOMIC DN486303N:A6 345308500 2017-08-08 SC_RUN_22667_7#137 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090409/22667_7#137.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090409/22667_7#137.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#137 ERR2089422 SC_EXP_21999_7#160 456 4dee1d2550336bd93ddf000659af416a;3f517bf63ea5f00e52683460f453e643 1313 9d90f8a273ffa5c8160352bb2f79fe5d;cdefddda5ebdde47a3371b4d7041b9e8 SAMEA104154687 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089422/ERR2089422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089422/ERR2089422_2.fastq.gz 2847908 WGS 680a49f0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 55260413;59570122 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089422/ERR2089422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089422/ERR2089422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089422/21999_7#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089422/21999_7#160.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089422/ERR2089422_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089422/ERR2089422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089422/21999_7#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089422/21999_7#160.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80390737;4757 ERS1813705 ERX2146216 GENOMIC DN476874P:A9 355988500 2017-08-08 SC_RUN_21999_7#160 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089422/21999_7#160.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089422/21999_7#160.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#160 ERR2090535 SC_EXP_22667_8#73 435 6cb122a9fb0d0280df5a06d9adbb075e;de6b1fd030d766f99699e77fff4e6518 1313 68cd40dae58f1054615571cb312aa214;fc4c4486e124decd7fb4cf0a5daa9ba4 SAMEA104038621 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090535/ERR2090535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090535/ERR2090535_2.fastq.gz 3187344 WGS d497e8a0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60048071;64097517 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090535/ERR2090535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090535/ERR2090535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090535/22667_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090535/22667_8#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090535/ERR2090535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090535/ERR2090535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090535/22667_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090535/22667_8#73.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86241951;5176 ERS1702514 ERX2147329 GENOMIC DN486339C:A10 398418000 2017-08-08 SC_RUN_22667_8#73 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090535/22667_8#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090535/22667_8#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_8#73 ERR1333964 SC_EXP_18623_5#49 500 c359b6031a054ffe5e44fdcfef871c66;e69f967b0f42e1c5a44e9c211b0ef3cb 1313 a1c3208c5feeda8cb63b5f5c266f97fd;e62536c950080f8114702fb134729fb7 SAMEA3431255 2016-03-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR133/004/ERR1333964/ERR1333964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR133/004/ERR1333964/ERR1333964_2.fastq.gz 8943654 WGS GPS_US_2010208389_R1-sc-2296427 RANDOM 171966672;172630480 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR133/004/ERR1333964/ERR1333964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR133/004/ERR1333964/ERR1333964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR133/ERR1333964/18623_5#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR133/ERR1333964/18623_5#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR133/004/ERR1333964/ERR1333964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR133/004/ERR1333964/ERR1333964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR133/ERR1333964/18623_5#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR133/ERR1333964/18623_5#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258143527;14736 ERS740540 ERX1405556 GENOMIC 15431062 1117956750 2016-03-22 SC_RUN_18623_5#49 fasp.sra.ebi.ac.uk:/vol1/run/ERR133/ERR1333964/18623_5#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR133/ERR1333964/18623_5#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA587824 18623_5#49 ERR1453726 SC_EXP_19341_3#78 435 95c182de9597d24a9d4c669b1556ff90;2546842bca42be50d40639ef30c73238 1313 e00494da2d921a8a7bd673127be47040;af506d09c51c66ffd8bc80a039591d83 SAMEA3714043 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453726/ERR1453726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453726/ERR1453726_2.fastq.gz 2403104 WGS 40f376b0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 50075281;54156061 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453726/ERR1453726_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453726/ERR1453726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453726/19341_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453726/19341_3#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453726/ERR1453726_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453726/ERR1453726_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453726/19341_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453726/19341_3#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74379500;4047 ERS1021192 ERX1524204 GENOMIC 16008483 300388000 2016-06-14 SC_RUN_19341_3#78 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453726/19341_3#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453726/19341_3#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#78 ERR2089379 SC_EXP_21999_7#117 474 23a57e9a153b6b47c293290043c83a1f;3e58cffa14686c04bca36e68ca1c52ee 1313 91809edcbf1858b18512a6f5ea372390;5f450ea749d2b9579fd7da28d8cb8309 SAMEA104154645 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089379/ERR2089379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089379/ERR2089379_2.fastq.gz 1932286 WGS 661f69e0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 38539054;42124942 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089379/ERR2089379_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089379/ERR2089379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089379/21999_7#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089379/21999_7#117.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089379/ERR2089379_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089379/ERR2089379_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089379/21999_7#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089379/21999_7#117.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 55332809;3296 ERS1813663 ERX2146173 GENOMIC DN476874P:F3 241535750 2017-08-08 SC_RUN_21999_7#117 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089379/21999_7#117.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089379/21999_7#117.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#117 ERR2089415 SC_EXP_21999_7#153 466 b6318ce73a08975331825c24f5d307fe;1ebafa7345f540db60a19c3bece4006f 1313 d88a6cbdd37dd668fdea9e9f9133c644;7e98a52559aba728b0be79dfeb6622c8 SAMEA104154680 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089415/ERR2089415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089415/ERR2089415_2.fastq.gz 2575292 WGS 67bf8550-c37a-11e6-b158-3c4a9275d6c8 RANDOM 50551256;55467879 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089415/ERR2089415_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089415/ERR2089415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089415/21999_7#153.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089415/21999_7#153.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089415/ERR2089415_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089415/ERR2089415_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089415/21999_7#153.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089415/21999_7#153.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73647973;4301 ERS1813698 ERX2146209 GENOMIC DN476874P:B8 321911500 2017-08-08 SC_RUN_21999_7#153 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089415/21999_7#153.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089415/21999_7#153.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#153 ERR1422359 SC_EXP_19084_7#30 453 f85e6cc4fc5b2e2a83df3b50d9f3efee;58293713514263bcca651efa4e78a989 1313 ecfa33754eafdb393a8961129bd71cff;37fe050d781bc45eb32bd7684c11a564 SAMEA3714183 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422359/ERR1422359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422359/ERR1422359_2.fastq.gz 2473602 WGS 44a8dd90-41bd-11e5-998e-3c4a9275d6c6 RANDOM 53729045;54422888 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422359/ERR1422359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422359/ERR1422359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422359/19084_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422359/19084_7#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422359/ERR1422359_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422359/ERR1422359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422359/19084_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422359/19084_7#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78168722;4163 ERS1021332 ERX1492941 GENOMIC 15738035 309200250 2016-05-24 SC_RUN_19084_7#30 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422359/19084_7#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422359/19084_7#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#30 ERR1065917 SC_EXP_17150_6#91 464 4cab3d48453a850de0dddac1a4d138c3;169408dc0b90bb1ce39e51e81c2f64f1 1313 5436961687fbd4a79f4b6a1e60d47f08;9cd94294134a5738f4d3ee7196d18463 SAMEA3354254 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065917/ERR1065917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065917/ERR1065917_2.fastq.gz 4588502 WGS GPS_ZA_3043-sc-2278862 RANDOM 85438724;83554951 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065917/ERR1065917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065917/ERR1065917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065917/17150_6#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065917/17150_6#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065917/ERR1065917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065917/ERR1065917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065917/17150_6#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065917/17150_6#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 127732572;7529 ERS708609 ERX1146067 GENOMIC 14438191 573562750 2015-10-13 SC_RUN_17150_6#91 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065917/17150_6#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065917/17150_6#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#91 ERR1065902 SC_EXP_17150_6#76 464 96cfd6a3a64a461bcf79fbb4a9847ec6;17e81c02b8f4d3f0e9a9730f3cdfeab0 1313 2ce08ccc62f9a16f1315ecf96ae37e34;58e7116af0c60f35e2a1616e2b6a032c SAMEA3354224 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065902/ERR1065902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065902/ERR1065902_2.fastq.gz 4211230 WGS GPS_ZA_3034-sc-2278832 RANDOM 78050347;74381566 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065902/ERR1065902_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065902/ERR1065902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065902/17150_6#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065902/17150_6#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065902/ERR1065902_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065902/ERR1065902_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065902/17150_6#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065902/17150_6#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 114358752;6982 ERS708579 ERX1146052 GENOMIC 14438201 526403750 2015-10-13 SC_RUN_17150_6#76 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065902/17150_6#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065902/17150_6#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#76 ERR1065868 SC_EXP_17150_6#42 464 58e334cb04f0177f3dffd512266db00d;6a0185276d9cc3f3fa38df11d4bffc79 1313 3c9a85a192147d8874dd7846cb780088;f303e249cdfd7cf9ac1da89b3c326b4f SAMEA3354156 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065868/ERR1065868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065868/ERR1065868_2.fastq.gz 4174668 WGS GPS_ZA_3010-sc-2278764 RANDOM 82068604;79379349 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065868/ERR1065868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065868/ERR1065868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065868/17150_6#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065868/17150_6#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065868/ERR1065868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065868/ERR1065868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065868/17150_6#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065868/17150_6#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 121416249;6921 ERS708511 ERX1146018 GENOMIC 14438173 521833500 2015-10-13 SC_RUN_17150_6#42 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065868/17150_6#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065868/17150_6#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#42 ERR1066313 SC_EXP_17175_8#29 467 14db23ae2579f944ec035483c995f5d6;1ce0b6ac5884d8c5a5b3280280d46355 1313 2a7492ff0926640e721e3ba27e46e801;1c00532a31b35f9e53eeb3c423fcbdd4 SAMEA3353955 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066313/ERR1066313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066313/ERR1066313_2.fastq.gz 4614844 WGS GPS_ZA_2911-sc-2278561 RANDOM 82602789;84272718 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066313/ERR1066313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066313/ERR1066313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066313/17175_8#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066313/17175_8#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066313/ERR1066313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066313/ERR1066313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066313/17175_8#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066313/17175_8#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 126576598;7650 ERS708310 ERX1146463 GENOMIC 14455737 576855500 2015-10-13 SC_RUN_17175_8#29 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066313/17175_8#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066313/17175_8#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#29 ERR1202552 SC_EXP_17966_5#102 464 8015c40adf99801de32bc4d51596d810;353ff833dd48686289bee9069dfc783e 1313 d480c6fe272992d1b285342adf922dbe;714beb5b739fdde75df2adcd96e47295 SAMEA3390029 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202552/ERR1202552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202552/ERR1202552_2.fastq.gz 2279392 WGS GPS_MW_BKQG26-sc-2296274 RANDOM 39394020;41089628 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202552/ERR1202552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202552/ERR1202552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202552/17966_5#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202552/17966_5#102.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202552/ERR1202552_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202552/ERR1202552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202552/17966_5#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202552/17966_5#102.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56119841;3856 ERS726132 ERX1274794 GENOMIC 15024751 284924000 2016-01-12 SC_RUN_17966_5#102 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202552/17966_5#102.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202552/17966_5#102.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#102 ERR1065833 SC_EXP_17150_6#7 464 475d4eca63c2d40f5f4ed1503c64e08d;11d72f53a93297e6be2bb11a8996d1c4 1313 fc161e53cf4cbca50ef5761ec87f6a0a;98ddb1e2e9f4a9813e3f4b92f81f58b6 SAMEA3354095 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065833/ERR1065833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065833/ERR1065833_2.fastq.gz 4597814 WGS GPS_ZA_2981-sc-2278701 RANDOM 88086746;81345145 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065833/ERR1065833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065833/ERR1065833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065833/17150_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065833/17150_6#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065833/ERR1065833_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065833/ERR1065833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065833/17150_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065833/17150_6#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 127707020;7628 ERS708450 ERX1145983 GENOMIC 14438228 574726750 2015-10-13 SC_RUN_17150_6#7 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065833/17150_6#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065833/17150_6#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#7 ERR913293 SC_EXP_15873_3#59 216 fbe8cf8e6945f2e47256b4000f5b9b8b;54deb7acc55ac683f29d67dee0cfd5ac 1313 34d0b376014525b28d334e1e7e5ae382;90a3b1a465cf6469fe97a2e1ea557210 SAMEA3233252 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913293/ERR913293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913293/ERR913293_2.fastq.gz 5959762 WGS GPS_GM_1376-sc-2206008 RANDOM 186117488;191963768 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913293/ERR913293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913293/ERR913293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913293/15873_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913293/15873_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913293/ERR913293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913293/ERR913293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913293/15873_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913293/15873_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305439279;9584 ERS654445 ERX992417 GENOMIC 13308171 595976200 2015-06-17 SC_RUN_15873_3#59 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913293/15873_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913293/15873_3#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#59 ERR1065393 SC_EXP_17138_3#3 472 fb9e017d485b5100dae4330749b73cb3;0a83b3d05db29de55946c69b35528a35 1313 722c49b8511088d4a434f257f2b76629;558b1f32967aa3b48462dfdabb190089 SAMEA3354263 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065393/ERR1065393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065393/ERR1065393_2.fastq.gz 5922760 WGS GPS_ZA_3045-sc-2278871 RANDOM 128945920;120880084 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065393/ERR1065393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065393/ERR1065393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065393/17138_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065393/17138_3#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065393/ERR1065393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065393/ERR1065393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065393/17138_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065393/17138_3#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 191296976;9770 ERS708618 ERX1145543 GENOMIC 14438277 740345000 2015-10-13 SC_RUN_17138_3#3 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065393/17138_3#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065393/17138_3#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#3 ERR984255 SC_EXP_16453_2#18 218 ee0357db13ef207b9c83ddb8dbdddfdb;12c5f957669843e7c6e34ed77bc3cfec 1313 abded2b92819da7fa9e1437291e9da9f;19c3617fc965035ee83df0d576dd7b4f SAMEA3309772 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984255/ERR984255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984255/ERR984255_2.fastq.gz 5771534 WGS GPS_GM_1790-sc-2206586 RANDOM 95487229;102056276 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984255/ERR984255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984255/ERR984255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984255/16453_2#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984255/16453_2#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984255/ERR984255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984255/ERR984255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984255/16453_2#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984255/16453_2#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 169740138;9676 ERS686234 ERX1065476 GENOMIC 13843266 721441750 2015-08-18 SC_RUN_16453_2#18 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984255/16453_2#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984255/16453_2#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#18 ERR984290 SC_EXP_16453_2#53 218 f822663a51d7a50a295e73b543268be7;90a17e14381d31130b542075e5a98768 1313 b6bb50a6afb51d3c627a9aa5fe92eeea;52f4032dbfbcf66a1505a97f71bf93e8 SAMEA3309807 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984290/ERR984290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984290/ERR984290_2.fastq.gz 5909076 WGS GPS_GM_1825-sc-2206622 RANDOM 99930102;105309737 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984290/ERR984290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984290/ERR984290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984290/16453_2#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984290/16453_2#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984290/ERR984290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984290/ERR984290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984290/16453_2#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984290/16453_2#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 175974499;9883 ERS686269 ERX1065511 GENOMIC 13843306 738634500 2015-08-18 SC_RUN_16453_2#53 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984290/16453_2#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984290/16453_2#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#53 ERR900700 SC_EXP_15731_8#55 230 fbad1320a3d2e488e6066ee1450c87f1;f45cd65f0282f546a8421af4401587fc 1313 676aaaf99bde72eabc1e3feabb406fa1;c63cd6cc2777fa07553cae43b7158ab3 SAMEA3206680 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900700/ERR900700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900700/ERR900700_2.fastq.gz 5550728 WGS GPS_ZA_carriage_SP79-sc-2191613 RANDOM 167906187;173430818 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900700/ERR900700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900700/ERR900700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900700/15731_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900700/15731_8#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900700/ERR900700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900700/ERR900700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900700/15731_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900700/15731_8#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 275917478;9032 ERS638690 ERX980089 GENOMIC 13208952 555072800 2015-05-26 SC_RUN_15731_8#55 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900700/15731_8#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900700/15731_8#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#55 ERR870219 SC_EXP_15531_6#27 212 5cc68a1ad112d64df4acd23494497c0d;e7d0c8f2608a181123ef754acf5738e9 1313 b302d92ee811c5e17cbfb8ce485ba250;28004aaa06333a8ac7a623baa4a0b6b2 SAMEA3172970 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870219/ERR870219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870219/ERR870219_2.fastq.gz 3912286 WGS GPS_GM_1114-sc-2190529 RANDOM 148707553;140208425 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870219/ERR870219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870219/ERR870219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870219/15531_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870219/15531_6#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870219/ERR870219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870219/ERR870219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870219/15531_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870219/15531_6#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239297775;6416 ERS627213 ERX949820 GENOMIC 12870043 391228600 2015-05-06 SC_RUN_15531_6#27 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870219/15531_6#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870219/15531_6#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#27 ERR876537 SC_EXP_15608_3#12 211 82ccbd55fe18cb737cdffb8f11eb73f1;0cce32246aedf3a40bf73470b6ea5c30 1313 125a4c1b3e0fb3e5364a4ef9eeb8959e;a64983c88ae2952235530c369f2e0d6d SAMEA3175763 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876537/ERR876537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876537/ERR876537_2.fastq.gz 5342928 WGS GPS_US_7090_99_R1-sc-2190799 RANDOM 161237399;167495763 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876537/ERR876537_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876537/ERR876537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876537/15608_3#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876537/15608_3#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876537/ERR876537_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876537/ERR876537_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876537/15608_3#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876537/15608_3#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265145015;8781 ERS628711 ERX956100 GENOMIC 13024299 534292800 2015-05-12 SC_RUN_15608_3#12 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876537/15608_3#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876537/15608_3#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_3#12 ERR870233 SC_EXP_15531_6#41 212 fee810dd91736bdc893983259b614e5c;6d13347cb811f2ad9f282b4a0e5b14f1 1313 82db824ed7ccbacb000687af3e33be6a;788273a2bfc1dc0d46166efb0511b75e SAMEA3172984 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870233/ERR870233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870233/ERR870233_2.fastq.gz 4119374 WGS GPS_GM_1128-sc-2190543 RANDOM 159738649;150888239 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870233/ERR870233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870233/ERR870233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870233/15531_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870233/15531_6#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870233/ERR870233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870233/ERR870233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870233/15531_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870233/15531_6#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257021300;6619 ERS627227 ERX949834 GENOMIC 12870021 411937400 2015-05-06 SC_RUN_15531_6#41 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870233/15531_6#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870233/15531_6#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#41 ERR870218 SC_EXP_15531_6#26 212 2439ac895b69d1c06e8a0644a117a501;d0ba18f33d5b46b51b805e396cd47cca 1313 602019fe4261e8c9e10c1f2f7575db1b;265f5b61ad16acb57e78b4d7faffed9b SAMEA3172969 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870218/ERR870218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870218/ERR870218_2.fastq.gz 3771550 WGS GPS_GM_1113-sc-2190528 RANDOM 143323418;135536170 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870218/ERR870218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870218/ERR870218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870218/15531_6#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870218/15531_6#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870218/ERR870218_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870218/ERR870218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870218/15531_6#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870218/15531_6#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230002455;6178 ERS627212 ERX949819 GENOMIC 12870031 377155000 2015-05-06 SC_RUN_15531_6#26 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870218/15531_6#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870218/15531_6#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#26 ERR870263 SC_EXP_15531_6#71 212 ae90e597898fe366133dbd5e1af872ba;177a15cbb620e318b69b9456ebf94393 1313 646c8f6c07b7dd8f907963008ac0e6b2;dcecd818c5f6e7f94ecf3ac49f66f306 SAMEA3173014 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870263/ERR870263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870263/ERR870263_2.fastq.gz 4861674 WGS GPS_GM_1158-sc-2190573 RANDOM 187716582;176409768 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870263/ERR870263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870263/ERR870263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870263/15531_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870263/15531_6#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870263/ERR870263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870263/ERR870263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870263/15531_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870263/15531_6#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302703559;7786 ERS627257 ERX949864 GENOMIC 12870096 486167400 2015-05-06 SC_RUN_15531_6#71 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870263/15531_6#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870263/15531_6#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#71 ERR774026 SC_EXP_14913_4#24 230 31e0d9068d60e04b27b9332734c65a2f;f392a379c13d895fc13608f4757120d3 1313 6a2b479b80251cf272e07cec08acab69;92c30af16a8d52cdd6d9192a3349ec19 SAMEA2814051 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774026/ERR774026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774026/ERR774026_2.fastq.gz 5041840 WGS GPS_ZA_2351-sc-2022535 RANDOM 166182813;172320420 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774026/ERR774026_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774026/ERR774026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774026/14913_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774026/14913_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774026/ERR774026_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774026/ERR774026_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774026/14913_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774026/14913_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277110019;8182 ERS566419 ERX716905 GENOMIC 12396067 504184000 2015-03-03 SC_RUN_14913_4#24 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774026/14913_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774026/14913_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#24 ERR774366 SC_EXP_14913_7#82 228 da5d8182477a3013a0ccd605a2f4658b;e0c1fd2ff1e7dc36c642e89bebc91521 1313 851427e3da03b3185267c90d187cab4f;14e9d330759150b1ca6fdbb28a2296d7 SAMEA2814292 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774366/ERR774366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774366/ERR774366_2.fastq.gz 4312506 WGS GPS_ZA_2504-sc-2022837 RANDOM 146007671;154150039 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774366/ERR774366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774366/ERR774366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774366/14913_7#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774366/14913_7#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774366/ERR774366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774366/ERR774366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774366/14913_7#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774366/14913_7#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245592861;6856 ERS566660 ERX717245 GENOMIC 12357943 431250600 2015-03-03 SC_RUN_14913_7#82 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774366/14913_7#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774366/14913_7#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#82 ERR870254 SC_EXP_15531_6#62 212 b60550bab702127cfefb4215be1f8cff;7d94bbf1d2fd9ec4e08af5239f9dccc8 1313 cdb315846d47409baeb464a4134829a9;a59cdf2f1fb290f111132d2ba258dca1 SAMEA3173005 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870254/ERR870254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870254/ERR870254_2.fastq.gz 4269302 WGS GPS_GM_1149-sc-2190564 RANDOM 162245520;154622145 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870254/ERR870254_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870254/ERR870254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870254/15531_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870254/15531_6#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870254/ERR870254_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870254/ERR870254_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870254/15531_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870254/15531_6#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263324989;6999 ERS627248 ERX949855 GENOMIC 12870083 426930200 2015-05-06 SC_RUN_15531_6#62 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870254/15531_6#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870254/15531_6#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#62 ERR750806 SC_EXP_14723_1#78 225 17ec761f62b2dfaed062c924e83a9efa;bd0311c38eb37c15f8b9907b0cd20d90 1313 b57fb848b8f2dd4b753e3faa09b29cfd;780d6455659b211a9f2e9a86993afd2a SAMEA2797056 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750806/ERR750806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750806/ERR750806_2.fastq.gz 5591450 WGS GPS_US_PATH3602-sc-2139083 RANDOM 204649166;207415186 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750806/ERR750806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750806/ERR750806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750806/14723_1#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750806/14723_1#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750806/ERR750806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750806/ERR750806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750806/14723_1#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750806/14723_1#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 341381633;9020 ERS558667 ERX694488 GENOMIC 12123415 559145000 2015-02-03 SC_RUN_14723_1#78 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750806/14723_1#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750806/14723_1#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#78 ERR742680 SC_EXP_14673_4#85 209 a4081fa6762f3de30c48fa22f8f375c3;ce119fd0959d476be0f80d5fac89524f 1313 9cc39d030dada84d06b2490bce9be36f;0c5baba6981a3fdb3bec1f1d08e5d6d1 SAMEA2796778 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742680/ERR742680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742680/ERR742680_2.fastq.gz 4041582 WGS GPS_US_PATH361-sc-2138786 RANDOM 130809348;135274651 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742680/ERR742680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742680/ERR742680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742680/14673_4#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742680/14673_4#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742680/ERR742680_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742680/ERR742680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742680/14673_4#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742680/14673_4#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 215640482;6488 ERS558389 ERX686363 GENOMIC 12062027 404158200 2015-01-27 SC_RUN_14673_4#85 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742680/14673_4#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742680/14673_4#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#85 ERR730632 SC_EXP_14555_4#62 208 66cada7c21aa637bc299ccc5e82a64c9;ea0bc4674221eb6db0417d1f548b45c9 1313 e54d1341fd2155765d8c12dc95372da3;497321e9339bb4d792bc8804443500cf SAMEA2659040 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730632/ERR730632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730632/ERR730632_2.fastq.gz 4186050 WGS GPS_ZA_2104-sc-2021678 RANDOM 125190836;130089382 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730632/ERR730632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730632/ERR730632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730632/14555_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730632/14555_4#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730632/ERR730632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730632/ERR730632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730632/14555_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730632/14555_4#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 208689869;6912 ERS509068 ERX674578 GENOMIC 11814967 418605000 2015-01-14 SC_RUN_14555_4#62 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730632/14555_4#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730632/14555_4#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#62 ERR730222 SC_EXP_14520_4#83 222 49b26bca3ef5a32505605762212f861b;c76e240632b1cb1d75cfaaabc3a7c741 1313 56b62cd7890c6c70fad6334c15ea2ada;5cb0aae923ef10f4799a1a54eee8335a SAMEA2696366 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730222/ERR730222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730222/ERR730222_2.fastq.gz 5652116 WGS GPS_GM_0601-sc-2021820 RANDOM 209288216;213632028 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730222/ERR730222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730222/ERR730222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730222/14520_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730222/14520_4#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730222/ERR730222_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730222/ERR730222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730222/14520_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730222/14520_4#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 349312243;9409 ERS524945 ERX674168 GENOMIC 11982777 565211600 2015-01-14 SC_RUN_14520_4#83 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730222/14520_4#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730222/14520_4#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#83 ERR730266 SC_EXP_14520_5#33 224 45028e64d2ddbfbcceda137491bf0f06;a16be8363c9696e7b5060e7f7fa608d6 1313 be2c76ab6687b4a27ab5e1264631c817;737c03f671c26a7c4294ea24b199640f SAMEA2696421 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730266/ERR730266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730266/ERR730266_2.fastq.gz 5115630 WGS GPS_GM_0646-sc-2021876 RANDOM 193876636;197776190 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730266/ERR730266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730266/ERR730266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730266/14520_5#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730266/14520_5#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730266/ERR730266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730266/ERR730266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730266/14520_5#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730266/14520_5#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 324086219;8205 ERS525000 ERX674212 GENOMIC 11982844 511563000 2015-01-14 SC_RUN_14520_5#33 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730266/14520_5#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730266/14520_5#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#33 ERR730737 SC_EXP_14566_4#72 236 09530c55359b45272b7b4cb41caa18e8;115bab5296d9b92a4bd841a0bff9ff2a 1313 51c6da2ac63a75de938b46c58d6bfda3;f07a67cae1bee1309c59f6aaf9f745bd SAMEA2658703 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730737/ERR730737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730737/ERR730737_2.fastq.gz 4466498 WGS GPS_ZA_1639-sc-2021311 RANDOM 133926979;138211615 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730737/ERR730737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730737/ERR730737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730737/14566_4#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730737/14566_4#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730737/ERR730737_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730737/ERR730737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730737/14566_4#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730737/14566_4#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 221852430;7307 ERS508731 ERX674683 GENOMIC 11911829 446649800 2015-01-14 SC_RUN_14566_4#72 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730737/14566_4#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730737/14566_4#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#72 ERR662458 SC_EXP_13710_2#70 196 85ad0b1be210cd5526640467239c4924;dfac8f6221ecf869c1d228745f8cd504 1313 c83e528482d16cc77200ee93bdb82b38;953e8ff8d9db5f8f17ca0064ef15cc19 SAMEA2521872 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662458/ERR662458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662458/ERR662458_2.fastq.gz 6393852 WGS 7866_05-sc-1947168 RANDOM 206936987;215086663 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662458/ERR662458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662458/ERR662458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662458/13710_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662458/13710_2#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662458/ERR662458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662458/ERR662458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662458/13710_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662458/13710_2#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 352720247;10657 ERS455412 ERX618734 GENOMIC 11100507 639385200 2014-10-28 SC_RUN_13710_2#70 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662458/13710_2#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662458/13710_2#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#70 ERR568489 SC_EXP_12837_1#59 237 417fe9095d01665c6b829e06a66a19a9;aef0d7ad74ba8209ae59b41efa29167b 1313 10c58bdec0794864bfe9abccd2085deb;b1c74d7056d6d31a545336cf8d1a31bb SAMEA2434471 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568489/ERR568489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568489/ERR568489_2.fastq.gz 5935016 WGS SA_GPS_SP366-sc-1895534 RANDOM 202951396;204938288 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568489/ERR568489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568489/ERR568489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568489/12837_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568489/12837_1#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568489/ERR568489_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568489/ERR568489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568489/12837_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568489/12837_1#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 338303918;9819 ERS428648 ERX527478 GENOMIC 9966505 593501600 2014-07-23 SC_RUN_12837_1#59 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568489/12837_1#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568489/12837_1#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_1#59 ERR568635 SC_EXP_12837_3#31 231 8b46c9361967447941e420436e0f2abd;e745c32037caecff57926cf3cd2d4e4a 1313 7833adf4156e8647fcf0752bcde9dbd8;23db7e02aa43f0f8ab0df94a7e487805 SAMEA2434619 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568635/ERR568635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568635/ERR568635_2.fastq.gz 5457560 WGS SA_GPS_SP514-sc-1895684 RANDOM 176643324;180076919 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568635/ERR568635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568635/ERR568635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568635/12837_3#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568635/12837_3#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568635/ERR568635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568635/ERR568635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568635/12837_3#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568635/12837_3#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295530959;9022 ERS428796 ERX527624 GENOMIC 9986365 545756000 2014-07-23 SC_RUN_12837_3#31 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568635/12837_3#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568635/12837_3#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#31 ERR461694 SC_EXP_11861_4#50 224 fb2ac0531a5a20542e7795a9b5a2a0a6;e820bb749464d3a9c8cec802859cf6d0 1313 f2f7b0d58057fae08d2fdc73b4b3afb8;8231e9f751b90b6fda76394dc93caf20 SAMEA2238996 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461694/ERR461694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461694/ERR461694_2.fastq.gz 3466472 WGS 981842-sc-2013-11-05T12:06:13Z-1750361 RANDOM 108539111;112565904 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461694/ERR461694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461694/ERR461694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461694/11861_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461694/11861_4#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461694/ERR461694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461694/ERR461694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461694/11861_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461694/11861_4#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 180578419;5773 ERS367808 ERX428035 GENOMIC 9016371 346647200 2014-03-18 SC_RUN_11861_4#50 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461694/11861_4#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461694/11861_4#50.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#50 ERR461646 SC_EXP_11861_3#95 226 c21992fdb1143af6561a48960fe508fc;bc7df2f05a6caf314e8db40e929afa34 1313 191cd676a6d4c1e9f38b2b24ef102f01;aeda118402d7510fe7b6361ccacf5422 SAMEA2238948 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461646/ERR461646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461646/ERR461646_2.fastq.gz 5725190 WGS 2120014-sc-2013-11-05T12:05:22Z-1750313 RANDOM 184645980;190617247 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461646/ERR461646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461646/ERR461646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461646/11861_3#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461646/11861_3#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461646/ERR461646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461646/ERR461646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461646/11861_3#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461646/11861_3#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 309957105;9575 ERS367760 ERX427987 GENOMIC 9016289 572519000 2014-03-18 SC_RUN_11861_3#95 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461646/11861_3#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461646/11861_3#95.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#95 ERR449212 SC_EXP_11826_1#24 238 99ad2e72094b543bfe2f945a4c8f1ebe;18ee720c562735807234dedfc3ae285f 1313 6494699d15f001d34d86c7a2feb08722;15275e8b29cfa89a88522736f9b527f4 SAMEA2152431 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449212/ERR449212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449212/ERR449212_2.fastq.gz 3760670 WGS 1533_00-sc-2013-07-03T13:32:30Z-1659296 RANDOM 120447379;124600514 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449212/ERR449212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449212/ERR449212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449212/11826_1#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449212/11826_1#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449212/ERR449212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449212/ERR449212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449212/11826_1#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449212/11826_1#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 200204977;6311 ERS322469 ERX415584 GENOMIC 8949180 376067000 2014-03-04 SC_RUN_11826_1#24 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449212/11826_1#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449212/11826_1#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#24 ERR054439 SC_EXP_6753_2#2 243 b8e720e145ac5fce92d55ea399f79f9c 1313 cd79bb42ef16da6bc3993c805dcbe66f;52d905b7fd7d913cab2859d40ee34e58 SAMEA1025132 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054439/ERR054439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054439/ERR054439_2.fastq.gz 3467182 WGS SMRU1490-sc-2011-01-27-1061703 RANDOM 189989739;196199513 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054439/ERR054439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054439/ERR054439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054439/6753_2#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054439/ERR054439_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054439/ERR054439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054439/6753_2#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 495292019 ERS021000 ERX031485 GENOMIC 3414175 520077300 2011-11-15 SC_RUN_6753_2#2 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054439/6753_2#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051614 SC_EXP_6731_4#12 216 fd56a39767b061b5f1e47276db4972da 1313 fc0de7aa28e86ae37934254a71823df1;84cf93d61d2f7041422a69db47f29485 SAMEA1024636 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051614/ERR051614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051614/ERR051614_2.fastq.gz 3476512 WGS SMRU1068-sc-2011-01-27-1061281 RANDOM 181178343;185866504 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051614/ERR051614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051614/ERR051614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051614/6731_4#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051614/ERR051614_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051614/ERR051614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051614/6731_4#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 468338398 ERS020578 ERX028662 GENOMIC 3246293 521476800 2011-11-02 SC_RUN_6731_4#12 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051614/6731_4#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR054306 SC_EXP_6736_4#13 246 d217b0629cb3152a25fa211399af911a 1313 29271f88679a7d8b6a659b60e9f2b3d3;a8a27812ed2f601d996fb138217d6d53 SAMEA1025503 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054306/ERR054306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054306/ERR054306_2.fastq.gz 7388238 WGS SMRU1213-sc-2011-01-27-1061426 RANDOM 405850723;430079824 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054306/ERR054306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054306/ERR054306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054306/6736_4#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054306/ERR054306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054306/ERR054306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054306/6736_4#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1059869764 ERS020723 ERX031352 GENOMIC 3308060 1108235700 2011-11-15 SC_RUN_6736_4#13 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054306/6736_4#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR433940 SC_EXP_11658_2#95 231 64ea8f0ced60745712be2bdb2ef0de68;9d11d7b162ffc58b53a1b5f27b7a7504 1313 51979f43641806a5aecdb826f59c00b3;8587ea3dc6ffd495c0e389245984f174 SAMEA2203781 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433940/ERR433940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433940/ERR433940_2.fastq.gz 5044784 WGS 2009215863-sc-2013-10-09T11:49:16Z-1712370 RANDOM 163920656;168901519 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433940/ERR433940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433940/ERR433940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433940/11658_2#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433940/11658_2#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433940/ERR433940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433940/ERR433940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433940/11658_2#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433940/11658_2#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273301808;8230 ERS356285 ERX400215 GENOMIC 8593386 504478400 2014-02-18 SC_RUN_11658_2#95 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433940/11658_2#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433940/11658_2#95.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#95 ERR084227 SC_EXP_7038_7#1 246 e6a5ae0374f4d5a9aa862ab6421fb06a 1313 88e4d5d5b007fd2bc67cbc2bc77ede67;3698a45429d5bbe15eb866525205bbe6 SAMEA1029202 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084227/ERR084227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084227/ERR084227_2.fastq.gz 3956589 WGS SMRU3001-sc-2011-01-27-1063214 RANDOM 251620246;262336933 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084227/ERR084227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084227/ERR084227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084227/7038_7#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084227/ERR084227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084227/ERR084227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084227/7038_7#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1007829866 ERS022511 ERX061993 GENOMIC 3811754 593488350 2012-02-07 SC_RUN_7038_7#1 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084227/7038_7#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR052627 SC_EXP_6714_8#2 246 446bd79b8a644bb0b537c77fdf2b4f87 1313 b3b5b82999ec613d871acd3e094e6d55;d5dcfcf7121dc0602090b3952ad73d72 SAMEA1023675 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052627/ERR052627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052627/ERR052627_2.fastq.gz 7216276 WGS SMRU554-sc-2011-01-27-1060743 RANDOM 385860769;407840173 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052627/ERR052627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052627/ERR052627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052627/6714_8#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052627/ERR052627_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052627/ERR052627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052627/6714_8#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1028012346 ERS019712 ERX029675 GENOMIC 3100032 1082441400 2011-11-07 SC_RUN_6714_8#2 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052627/6714_8#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR039634 SC_EXP_6259_8#3 183 fc49c456540dd03b48bff50f0744ea5e 1313 e5368a5abf4eca40ac0db477623ed014;50d5487a0753925672efb7b38ff4d383 SAMEA974638 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039634/ERR039634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039634/ERR039634_2.fastq.gz 3997224 WGS SMRU75-sc-2011-01-27-1026500 RANDOM 212372328;220219716 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039634/ERR039634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039634/ERR039634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039634/6259_8#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039634/ERR039634_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039634/ERR039634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039634/6259_8#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 554248096 ERS019233 ERX016807 GENOMIC 2591005 599583600 2011-07-27 SC_RUN_6259_8#3 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039634/6259_8#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2667092 SC_EXP_24775_1#64 408 e7f3e467a2f714098f158d8aa531f077;d494a569115402adf4d7d92e2dd0859f 1313 2e0e60dbdf43d81d3f38356ee4b0a982;02c41f64a38aab4fb1134485f9f75eaf SAMEA4732902 2018-06-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2667092/ERR2667092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2667092/ERR2667092_2.fastq.gz 2619386 WGS ecfddfa6-af2d-11e7-a639-3c4a9275d6c8 RANDOM 59537053;75716329 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2667092/ERR2667092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2667092/ERR2667092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667092/24775_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667092/24775_1#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/002/ERR2667092/ERR2667092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/002/ERR2667092/ERR2667092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667092/24775_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667092/24775_1#64.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96471215;4414 ERS2553029 ERX2682206 GENOMIC DN502973S:H8 395527286 2018-06-26 SC_RUN_24775_1#64 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2667092/24775_1#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2667092/24775_1#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 HiSeq X Ten paired end sequencing ERA1526580 24775_1#64 ERR2305059 SC_EXP_22695_3#18 427 0fbfdb06aab9a45525ed08c6b2c26fe6;5a87bc517e8011f7f5af2eee3b3bfa9c 1313 b04da4a83eabf2b352f2ab26823bc793;b1cff402d3b63032b8fcfa42fc0520f7 SAMEA104034607 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305059/ERR2305059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305059/ERR2305059_2.fastq.gz 2397240 WGS e560db50-13c3-11e7-942b-3c4a9275d6c8 RANDOM 65273466;87891521 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305059/ERR2305059_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305059/ERR2305059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305059/22695_3#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305059/22695_3#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305059/ERR2305059_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305059/ERR2305059_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305059/22695_3#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305059/22695_3#18.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 112474796;4000 ERS1698500 ERX2356369 GENOMIC DN477140L:B3 361983240 2018-02-16 SC_RUN_22695_3#18 99 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305059/22695_3#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305059/22695_3#18.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808572 ERR2090777 SC_EXP_22841_2#46 398 0cd13d64124d60f34806ac81c030e4b3;3e0bf04af8370f92dae3efd8d4c98e5f 1313 5a34778ced2f6aaf6dc553e2a5d85d0d;8e8f6a8ae61cfcc6cf4141378647770b SAMEA104035625 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090777/ERR2090777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090777/ERR2090777_2.fastq.gz 2796838 WGS b15fa490-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 64548248;65920632 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090777/ERR2090777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090777/ERR2090777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090777/22841_2#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090777/22841_2#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090777/ERR2090777_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090777/ERR2090777_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090777/22841_2#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090777/22841_2#46.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93074658;4560 ERS1699518 ERX2147571 GENOMIC DN483653U:F6 349604750 2017-08-08 SC_RUN_22841_2#46 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090777/22841_2#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090777/22841_2#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#46 ERR2090666 SC_EXP_22841_1#125 445 c7061bd0089c64391a7c8d4ffe1ef69f;aeab22da7937b80bf1c3e97cbfb231c8 1313 a801d313bf079c4714a27c0f1b4fbf30;c40af271e380672ef8ce0d08918d6219 SAMEA104035511 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090666/ERR2090666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090666/ERR2090666_2.fastq.gz 2691578 WGS a797fb10-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 50283363;56394708 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090666/ERR2090666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090666/ERR2090666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090666/22841_1#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090666/22841_1#125.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090666/ERR2090666_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090666/ERR2090666_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090666/22841_1#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090666/22841_1#125.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74552944;4492 ERS1699404 ERX2147460 GENOMIC DN477156T:F4 336447250 2017-08-08 SC_RUN_22841_1#125 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090666/22841_1#125.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090666/22841_1#125.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#125 ERR2089829 SC_EXP_22114_6#41 450 433ca0f77abaaa04274bf52cd9140462;b50865212842d6923eac78df24086b0a 1313 7044cabfe7e56d2bd4829921e60d260a;96ffab59e2ae5b68d1eeba40eed02e16 SAMEA104155016 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089829/ERR2089829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089829/ERR2089829_2.fastq.gz 2342722 WGS 8e956280-c37a-11e6-b158-3c4a9275d6c8 RANDOM 53248951;52409113 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089829/ERR2089829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089829/ERR2089829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089829/22114_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089829/22114_6#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089829/ERR2089829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089829/ERR2089829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089829/22114_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089829/22114_6#41.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75382685;3919 ERS1814034 ERX2146623 GENOMIC DN478829S:A6 292840250 2017-08-08 SC_RUN_22114_6#41 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089829/22114_6#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089829/22114_6#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#41 ERR2089784 SC_EXP_22027_1#164 431 6e1976384d7165ca03f4a5b1ae445ce9;b04dd2fb290d40986aaeee3d719644dd 1313 6994618000c39c110a7d6487d3253251;ee7cdd02f8740cbc38fd282d90423913 SAMEA104155139 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089784/ERR2089784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089784/ERR2089784_2.fastq.gz 2555550 WGS 9b15ea70-c37a-11e6-b158-3c4a9275d6c8 RANDOM 47589334;50834622 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089784/ERR2089784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089784/ERR2089784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089784/22027_1#164.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089784/22027_1#164.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089784/ERR2089784_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089784/ERR2089784_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089784/22027_1#164.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089784/22027_1#164.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69235724;4241 ERS1814157 ERX2146578 GENOMIC DN477278F:D10 319443750 2017-08-08 SC_RUN_22027_1#164 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089784/22027_1#164.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089784/22027_1#164.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#164 ERR1453698 SC_EXP_19341_3#50 467 07b50bf11d01deb6c052734f829260a6;5ddfefdb8e8fcb4d0eaf49204f7ebf0e 1313 d574664289d2226b869aa14752b06004;ab34aaff3755f84ddeff4d42aa62571b SAMEA3714008 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453698/ERR1453698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453698/ERR1453698_2.fastq.gz 2586018 WGS 3a7d6930-41bd-11e5-998e-3c4a9275d6c6 RANDOM 53477834;59699163 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453698/ERR1453698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453698/ERR1453698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453698/19341_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453698/19341_3#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453698/ERR1453698_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453698/ERR1453698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453698/19341_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453698/19341_3#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80723670;4355 ERS1021157 ERX1524176 GENOMIC 16008432 323252250 2016-06-14 SC_RUN_19341_3#50 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453698/19341_3#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453698/19341_3#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#50 ERR1202584 SC_EXP_17966_5#134 464 740fc174d78d34a5889bcece84f200eb;5257e4f9b323643a85f23b7cfb02e356 1313 90da2b2c0422995cbf7a4980a557e4cc;76bcf344139d69a7977515e7ea79f2c9 SAMEA3430878 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202584/ERR1202584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202584/ERR1202584_2.fastq.gz 2255122 WGS GPS_US_2010205239_R1-sc-2296399 RANDOM 38350352;41338619 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202584/ERR1202584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202584/ERR1202584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202584/17966_5#134.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202584/17966_5#134.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202584/ERR1202584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202584/ERR1202584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202584/17966_5#134.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202584/17966_5#134.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 55618209;3815 ERS740163 ERX1274826 GENOMIC 15024755 281890250 2016-01-12 SC_RUN_17966_5#134 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202584/17966_5#134.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202584/17966_5#134.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#134 ERR1214529 SC_EXP_18090_2#21 454 a091cf0ca746ad6ae898c6ed65dc1ead;6c2a7469c34a7a8df17614610f3237fa 1313 7a2c0a26c33a5dd322791394f72a1ec7;5d145e02335ae950a4f86f9eb9046c5b SAMEA3431395 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214529/ERR1214529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214529/ERR1214529_2.fastq.gz 2665276 WGS GPS_HK_23-sc-2296569 RANDOM 53923032;56378203 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214529/ERR1214529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214529/ERR1214529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214529/18090_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214529/18090_2#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214529/ERR1214529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214529/ERR1214529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214529/18090_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214529/18090_2#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78759324;4481 ERS740680 ERX1286742 GENOMIC 15079977 333159500 2016-01-19 SC_RUN_18090_2#21 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214529/18090_2#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214529/18090_2#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#21 ERR1422480 SC_EXP_19084_7#151 449 7d573f55f32703ba81463ab16426124e;4cacb69a83315b0746967008ce80afb5 1313 615ddb89660a4aab54e4900e4eb0f983;2530f48970c83a0f61dab7200bbfeda9 SAMEA3714304 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422480/ERR1422480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422480/ERR1422480_2.fastq.gz 2123334 WGS 4ba7f130-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 45372442;45399235 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422480/ERR1422480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422480/ERR1422480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422480/19084_7#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422480/19084_7#151.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422480/ERR1422480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422480/ERR1422480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422480/19084_7#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422480/19084_7#151.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64499171;3646 ERS1021453 ERX1493062 GENOMIC 15738100 265416750 2016-05-24 SC_RUN_19084_7#151 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422480/19084_7#151.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422480/19084_7#151.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#151 ERR1202264 SC_EXP_17870_8#4 447 f4b5fb3deecfce4a1c6d4bfe59ab2d4f;2b30c0ca8fab13a189b65e13cf7d3ba7 1313 49ac28546690a86e44859fef2cc4c4e5;22be822331260297525b5958c26f74e3 SAMEA3389813 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202264/ERR1202264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202264/ERR1202264_2.fastq.gz 2763528 WGS GPS_MW_D32366-sc-2296057 RANDOM 56022322;56581686 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202264/ERR1202264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202264/ERR1202264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202264/17870_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202264/17870_8#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202264/ERR1202264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202264/ERR1202264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202264/17870_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202264/17870_8#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83919307;4483 ERS725916 ERX1274506 GENOMIC 14977708 345441000 2016-01-12 SC_RUN_17870_8#4 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202264/17870_8#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202264/17870_8#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#4 ERR1214528 SC_EXP_18090_2#20 454 38859ccd43e4773b50be97883a150460;f0adcdd53644fc4f387b688758b9ffe8 1313 9684812b1218d1b3c6f088faad28978c;927e84972959be9fb28e3870e069344b SAMEA3431393 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214528/ERR1214528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214528/ERR1214528_2.fastq.gz 2582562 WGS GPS_HK_22-sc-2296567 RANDOM 54237278;57459489 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214528/ERR1214528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214528/ERR1214528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214528/18090_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214528/18090_2#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214528/ERR1214528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214528/ERR1214528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214528/18090_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214528/18090_2#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79114455;4279 ERS740678 ERX1286741 GENOMIC 15079965 322820250 2016-01-19 SC_RUN_18090_2#20 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214528/18090_2#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214528/18090_2#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#20 ERR1192023 SC_EXP_17794_8#12 441 6e2715f85c6017f73a2b84d9b5cee116;d7c16c90f2967cfa402a271cb2dce5e2 1313 2dd16f03d3206896b4c9784146697f09;fd2b29b0f86edcda27841d0a7c7a662c SAMEA3381493 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192023/ERR1192023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192023/ERR1192023_2.fastq.gz 2625258 WGS GPS_GM_2045-sc-2279371 RANDOM 49237342;49677279 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192023/ERR1192023_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192023/ERR1192023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192023/17794_8#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192023/17794_8#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192023/ERR1192023_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192023/ERR1192023_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192023/17794_8#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192023/17794_8#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76911515;4429 ERS719752 ERX1265407 GENOMIC 14941568 328157250 2015-12-17 SC_RUN_17794_8#12 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192023/17794_8#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192023/17794_8#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#12 ERR1106767 SC_EXP_17428_8#144 478 b1c85ff8560acf2fb516789dd74f5b4a;77d947c20722e9cd9089bb496b5db9e4 1313 e221d3003b06f61649880bdf947d37b6;05e4293cb35b709740ae4609552fd06f SAMEA3381358 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106767/ERR1106767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106767/ERR1106767_2.fastq.gz 2450914 WGS GPS_GM_1870-sc-2279203 RANDOM 44361074;45388260 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106767/ERR1106767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106767/ERR1106767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106767/17428_8#144.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106767/17428_8#144.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/007/ERR1106767/ERR1106767_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/007/ERR1106767/ERR1106767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106767/17428_8#144.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106767/17428_8#144.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70527216;4170 ERS719617 ERX1186298 GENOMIC 14702523 306364250 2015-11-03 SC_RUN_17428_8#144 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106767/17428_8#144.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106767/17428_8#144.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#144 ERR1065839 SC_EXP_17150_6#13 464 405951f51d9ed20af6d514ff8477fadf;ffe033d357ea0a0b32e00e280528c37a 1313 b6c8f789abd3f53f41aa57a588e48b38;8992b15c69cbdfc9a84ee97f43824b7a SAMEA3354107 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065839/ERR1065839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065839/ERR1065839_2.fastq.gz 4856876 WGS GPS_ZA_2987-sc-2278713 RANDOM 91077697;90083827 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065839/ERR1065839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065839/ERR1065839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065839/17150_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065839/17150_6#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065839/ERR1065839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065839/ERR1065839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065839/17150_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065839/17150_6#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 140813818;8053 ERS708462 ERX1145989 GENOMIC 14438205 607109500 2015-10-13 SC_RUN_17150_6#13 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065839/17150_6#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065839/17150_6#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#13 ERR1065990 SC_EXP_17175_4#71 467 59a776e5cf2aaa856c35f645524d6900;28efc9b141e0c1a023660d06045d2c9a 1313 dac331cb3fe32ceeeb423bd9031b30a5;51e8cbba0a7f315903017a3ed9eaf44c SAMEA3353486 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065990/ERR1065990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065990/ERR1065990_2.fastq.gz 4640606 WGS GPS_ZA_carriage_SP1496-sc-2278086 RANDOM 83850821;86920951 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065990/ERR1065990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065990/ERR1065990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065990/17175_4#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065990/17175_4#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065990/ERR1065990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065990/ERR1065990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065990/17175_4#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065990/17175_4#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131357275;7634 ERS707841 ERX1146140 GENOMIC 14436377 580075750 2015-10-13 SC_RUN_17175_4#71 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065990/17175_4#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065990/17175_4#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#71 ERR1066147 SC_EXP_17175_6#45 449 a87dcbb377f2b167b6c90db890242b15;cd0dccc169c0ade46673429504a8fbf6 1313 d0174b4be34747bf3eac10aff3ca5076;7749f7cdfb5c40e662275113ad98ddfb SAMEA3353804 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066147/ERR1066147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066147/ERR1066147_2.fastq.gz 5359174 WGS GPS_ZA_carriage_SP1748-sc-2278408 RANDOM 99839152;103433917 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066147/ERR1066147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066147/ERR1066147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066147/17175_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066147/17175_6#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066147/ERR1066147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066147/ERR1066147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066147/17175_6#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066147/17175_6#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 156135870;8757 ERS708159 ERX1146297 GENOMIC 14427557 669896750 2015-10-13 SC_RUN_17175_6#45 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066147/17175_6#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066147/17175_6#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#45 ERR997696 SC_EXP_16399_7#75 213 84d1a6aa082b278d8ff1820096801d98;727bd1d390c06c478f44441c0b24984a 1313 1c33e4a26f7a71b78b438df6ccdd8bb7;4e1a944331a495f3afc71f655fb437af SAMEA3309748 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997696/ERR997696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997696/ERR997696_2.fastq.gz 5488928 WGS GPS_GM_1766-sc-2206562 RANDOM 185278003;192628188 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997696/ERR997696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997696/ERR997696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997696/16399_7#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997696/16399_7#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997696/ERR997696_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997696/ERR997696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997696/16399_7#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997696/16399_7#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 308910210;8874 ERS686210 ERX1076732 GENOMIC 13843382 548892800 2015-09-04 SC_RUN_16399_7#75 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997696/16399_7#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997696/16399_7#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#75 ERR980276 SC_EXP_16288_8#3 202 c4600d8132dbe76ed5540471f2d298b8;f14160ed361023bebb94c5d7c52da45e 1313 a131784589bc4b5b9df414f257b2e15a;236ea0b749ce559e61b5c5cd748b3be2 SAMEA3232769 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980276/ERR980276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980276/ERR980276_2.fastq.gz 6210556 WGS GPS_NP_1262-sc-2205681 RANDOM 206619387;202499609 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980276/ERR980276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980276/ERR980276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980276/16288_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980276/16288_8#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980276/ERR980276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980276/ERR980276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980276/16288_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980276/16288_8#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 334035501;10122 ERS653980 ERX1057148 GENOMIC 13301773 621055600 2015-08-12 SC_RUN_16288_8#3 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980276/16288_8#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980276/16288_8#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#3 ERR714185 SC_EXP_14410_4#83 220 08e4010577d7a3a67b0b07febd9e6e2c;f9001cb7f79489b6906a6645c3c83e89 1313 521964ecd6087f96f5779af41f0671d5;eeca0f3a4ffd167d385a971c32b4e44a SAMEA2627517 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714185/ERR714185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714185/ERR714185_2.fastq.gz 5410230 WGS GPS_GM_0346-sc-2003471 RANDOM 188866529;189874820 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714185/ERR714185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714185/ERR714185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714185/14410_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714185/14410_4#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714185/ERR714185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714185/ERR714185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714185/14410_4#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714185/14410_4#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 309794706;8871 ERS497416 ERX658107 GENOMIC 11858277 541023000 2015-01-08 SC_RUN_14410_4#83 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714185/14410_4#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714185/14410_4#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#83 ERR714598 SC_EXP_14412_1#61 235 d1bea7ecbb1e43dec6d0ae8df54cdb10;c5aeb2ad7db40cd115ab947eed083dc5 1313 95a020fc716777fb796fe2f491fb8b37;12158005875a4ebe78a954abe06631a9 SAMEA2658764 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714598/ERR714598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714598/ERR714598_2.fastq.gz 5638440 WGS GPS_ZA_1723-sc-2021372 RANDOM 197345171;200443475 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714598/ERR714598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714598/ERR714598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714598/14412_1#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714598/14412_1#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714598/ERR714598_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714598/ERR714598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714598/14412_1#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714598/14412_1#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 329355983;9421 ERS508792 ERX658520 GENOMIC 11839077 563844000 2015-01-08 SC_RUN_14412_1#61 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714598/14412_1#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714598/14412_1#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#61 ERR714319 SC_EXP_14410_6#47 230 0a3ef902ace82c4af8193c9f3593916f;06247982c3e8ac96083a7011c4146119 1313 c4fcb7a50227c20be75110fd53fcdfa3;44231f92d35682bafc0e62494a45f8eb SAMEA2627386 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714319/ERR714319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714319/ERR714319_2.fastq.gz 5812986 WGS GPS_GM_0395-sc-2003324 RANDOM 203934705;205195363 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714319/ERR714319_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714319/ERR714319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714319/14410_6#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714319/14410_6#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714319/ERR714319_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714319/ERR714319_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714319/14410_6#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714319/14410_6#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 337132345;9516 ERS497285 ERX658241 GENOMIC 11883331 581298600 2015-01-08 SC_RUN_14410_6#47 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714319/14410_6#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714319/14410_6#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#47 ERR714295 SC_EXP_14410_6#23 230 026e06e6a743ee4aa92ed5459630b808;2b3b54088d5d19f1890d0c3982e5a28d 1313 28663be634044d90b1eec04047d24c27;41b53de4049486aee80c9d693701f377 SAMEA2627287 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714295/ERR714295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714295/ERR714295_2.fastq.gz 5899132 WGS GPS_GM_0371-sc-2003222 RANDOM 204433988;205819593 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714295/ERR714295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714295/ERR714295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714295/14410_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714295/14410_6#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714295/ERR714295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714295/ERR714295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714295/14410_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714295/14410_6#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 337896553;9732 ERS497186 ERX658217 GENOMIC 11883328 589913200 2015-01-08 SC_RUN_14410_6#23 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714295/14410_6#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714295/14410_6#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#23 ERR662420 SC_EXP_13710_2#32 196 69b95f1d73e81e49956c0ad422582e6d;de77ae650545a1f1a31ce94e1525ee2e 1313 047d45c21a07491cc0115fc39d52f4ab;dee127d83129a4bf484f57b998cda31c SAMEA2521699 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662420/ERR662420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662420/ERR662420_2.fastq.gz 7163064 WGS 2012212207-sc-1946992 RANDOM 234008807;245072660 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662420/ERR662420_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662420/ERR662420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662420/13710_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662420/13710_2#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662420/ERR662420_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662420/ERR662420_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662420/13710_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662420/13710_2#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 401046654;11799 ERS455239 ERX618696 GENOMIC 11100526 716306400 2014-10-28 SC_RUN_13710_2#32 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662420/13710_2#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662420/13710_2#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#32 ERR600209 SC_EXP_13414_2#76 233 0a3c9d372959317ab10e30dc215a0f0d;4fd5ec2aa40c10ba15f7a29d51fc245d 1313 1e5476869c872e3e43f526ef1418bad2;d07976fef487705d5d18b7026d901413 SAMEA2521627 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600209/ERR600209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600209/ERR600209_2.fastq.gz 4429356 WGS 2012220098-sc-1946919 RANDOM 144152111;148803952 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600209/ERR600209_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600209/ERR600209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600209/13414_2#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600209/13414_2#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600209/ERR600209_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600209/ERR600209_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600209/13414_2#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600209/13414_2#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240699809;7393 ERS455167 ERX557038 GENOMIC 10600539 442935600 2014-09-16 SC_RUN_13414_2#76 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600209/13414_2#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600209/13414_2#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#76 ERR568565 SC_EXP_12837_2#48 237 0a86f51b016c8d2fd1c5345264b4aa2e;64bb1ef497ba8cbec59202eb17a85e39 1313 5ff6463f48d5eadc38c32f4f91ab2094;8631f1b092931513f10bf020eb262cf4 SAMEA2434548 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568565/ERR568565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568565/ERR568565_2.fastq.gz 5098088 WGS SA_GPS_SP443-sc-1895612 RANDOM 172663815;175414519 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568565/ERR568565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568565/ERR568565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568565/12837_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568565/12837_2#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568565/ERR568565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568565/ERR568565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568565/12837_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568565/12837_2#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288216556;8422 ERS428725 ERX527554 GENOMIC 9967283 509808800 2014-07-23 SC_RUN_12837_2#48 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568565/12837_2#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568565/12837_2#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_2#48 ERR600512 SC_EXP_13415_6#12 231 645c696a7511728515e9a61ad976e57b;58af7f4b6afd2984b5f64938e797e1e9 1313 ba87915a7e377fed8e63c73318c7a6a2;2fda8cc00c7f9643ac69dd3238a93a82 SAMEA2554027 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600512/ERR600512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600512/ERR600512_2.fastq.gz 4841866 WGS GPS_ZA_916-sc-1951063 RANDOM 161560320;167682151 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600512/ERR600512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600512/ERR600512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600512/13415_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600512/13415_6#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600512/ERR600512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600512/ERR600512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600512/13415_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600512/13415_6#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 271435933;7925 ERS464528 ERX557341 GENOMIC 10631312 484186600 2014-09-16 SC_RUN_13415_6#12 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600512/13415_6#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600512/13415_6#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#12 ERR449188 SC_EXP_11822_8#79 250 b44b87c2b61a5d3f19fd79f4669985c3;f3c30f883d1e9863986f86a478cc5c01 1313 45a624e8db29b341d7472e3f0884f5a3;09d44a6a48fb79631e91f5bf3ff3a263 SAMEA2204008 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449188/ERR449188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449188/ERR449188_2.fastq.gz 6273708 WGS 2009215804-sc-2013-10-09T11:53:32Z-1712599 RANDOM 207632733;216211771 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449188/ERR449188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449188/ERR449188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449188/11822_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449188/11822_8#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449188/ERR449188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449188/ERR449188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449188/11822_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449188/11822_8#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 351541027;10327 ERS356519 ERX415560 GENOMIC 8967065 627370800 2014-03-04 SC_RUN_11822_8#79 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449188/11822_8#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449188/11822_8#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_8#79 ERR331427 SC_EXP_10050_2#37 224 96d0c8f8de0b8030960cc6a62bfdc921 1313 e0dbe24bc0f4f664d6e323a7d45ae90c;1d3b19fcb2d4dd7f1e40706a88e1debd SAMEA2058881 2013-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331427/ERR331427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331427/ERR331427_2.fastq.gz 2062724 WGS PBCN0068-sc-2013-03-27T13:16:45Z-1603483 RANDOM 135436444;147062949 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331427/ERR331427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331427/ERR331427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331427/10050_2#37.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331427/ERR331427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331427/ERR331427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331427/10050_2#37.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 384058982 ERS225619 ERX304356 GENOMIC 7376941 412544800 2013-08-27 SC_RUN_10050_2#37 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR331/ERR331427/10050_2#37.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA247607 10050_2#37 ERR563933 SC_EXP_12754_3#84 235 2cc22847c9425416d7488900e3f9e6fa;b6659677554cb76c2be3892371e62b32 1313 da470aa8ae7fffa1af08ff4f7c3686f6;0a951dcdad5173e4799e74c28350d683 SAMEA2383199 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563933/ERR563933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563933/ERR563933_2.fastq.gz 4673020 WGS 2110892_II-sc-1870450 RANDOM 162344032;165399015 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563933/ERR563933_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563933/ERR563933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563933/12754_3#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563933/12754_3#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563933/ERR563933_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563933/ERR563933_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563933/12754_3#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563933/12754_3#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271623008;7568 ERS409524 ERX522958 GENOMIC 9922056 467302000 2014-07-16 SC_RUN_12754_3#84 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563933/12754_3#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563933/12754_3#84.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#84 ERR273549 SC_EXP_6731_2#22 215 5c4e504e2e26c10da8160aff392eed19 1313 7d527d78ea83ae1c601f2d65aa6e3ba4;dd33e8266a7c75e154cc77daff76ce70 SAMEA1024880 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273549/ERR273549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273549/ERR273549_2.fastq.gz 1806364 WGS SMRU1030-sc-2011-01-27-1061243 RANDOM 79396123;80068319 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273549/ERR273549_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273549/ERR273549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273549/6731_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273549/ERR273549_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273549/ERR273549_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273549/6731_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 238283714 ERS020540 ERX247825 GENOMIC 3246205 270954600 2013-05-13 SC_RUN_6731_2#22 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273549/6731_2#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR129061 SC_EXP_7622_2#37 219 f0c4f730df31e6d45e3b6cc87e8761c4 1313 1522c1fe8cffa77f92f3ef82ac23b2ba;d0664b4430a02fe80a36e4a3f857c50c SAMEA1463278 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129061/ERR129061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129061/ERR129061_2.fastq.gz 2269874 WGS BR1109-sc-2011-11-08T10:06:48Z-1298320 RANDOM 244191151;251920195 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129061/ERR129061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129061/ERR129061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129061/7622_2#37.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129061/ERR129061_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129061/ERR129061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129061/7622_2#37.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 482104911 ERS069952 ERX105202 GENOMIC 4336470 453974800 2012-05-28 SC_RUN_7622_2#37 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129061/7622_2#37.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124300 SC_EXP_7553_5#84 207 84f3e246e2c38a30439ade0eabf7b355 1313 f724adb9a06cc5ba6ab90ede8cf05510;2065cf3bae600e91bf13f22630f878dc SAMEA1463090 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124300/ERR124300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124300/ERR124300_2.fastq.gz 9055400 WGS PT8065-sc-2011-11-08T10:09:45Z-1298559 RANDOM 948833529;992332437 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124300/ERR124300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124300/ERR124300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124300/7553_5#84.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124300/ERR124300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124300/ERR124300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124300/7553_5#84.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1890648634 ERS070191 ERX100482 GENOMIC 4383203 1811080000 2012-05-09 SC_RUN_7553_5#84 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124300/7553_5#84.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR124283 SC_EXP_7553_5#67 207 57a3f03c40c6abee34e97eda47ef1df7 1313 07e1c01a8ad11ff412eaa208acc1d734;58b0c87dc33347ace45315e067311ccb SAMEA1463283 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124283/ERR124283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124283/ERR124283_2.fastq.gz 4674387 WGS PT8013-sc-2011-11-08T10:09:33Z-1298542 RANDOM 491343322;513154025 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124283/ERR124283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124283/ERR124283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124283/7553_5#67.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124283/ERR124283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124283/ERR124283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124283/7553_5#67.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 982405442 ERS070174 ERX100465 GENOMIC 4383186 934877400 2012-05-09 SC_RUN_7553_5#67 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124283/7553_5#67.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR063910 SC_EXP_6925_3#5 239 8c558f46130e5f3d0db65db81f3e6702 1313 192ba9c12d1ea1c6aa65960ff1ac5362;d234168e81076be406400f34bf2d989b SAMEA1026179 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063910/ERR063910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063910/ERR063910_2.fastq.gz 4306930 WGS SMRU2117-sc-2011-01-27-1062330 RANDOM 266004315;261898623 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063910/ERR063910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063910/ERR063910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063910/6925_3#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063910/ERR063910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063910/ERR063910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063910/6925_3#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 670619337 ERS021627 ERX041883 GENOMIC 3610911 646039500 2012-01-05 SC_RUN_6925_3#5 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063910/6925_3#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063879 SC_EXP_6899_6#22 194 bd92be7d941117306cf33b6eb3835f8e 1313 f7a6e21a73d762de5f3cc2433027c560;910f94b592f98cf586813e3827a68a73 SAMEA1025774 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063879/ERR063879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063879/ERR063879_2.fastq.gz 4712284 WGS SMRU2086-sc-2011-01-27-1062299 RANDOM 299435105;304530296 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063879/ERR063879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063879/ERR063879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063879/6899_6#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063879/ERR063879_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063879/ERR063879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063879/6899_6#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 765160926 ERS021596 ERX041852 GENOMIC 3500012 706842600 2012-01-05 SC_RUN_6899_6#22 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063879/6899_6#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064069 SC_EXP_6938_6#3 230 65442544f278dd3eef7850863a034e07 1313 b47f4f685ef955374182d546a1b21367;4b0c2f3994ad5dfad6cad46c1afaef6a SAMEA1029003 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064069/ERR064069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064069/ERR064069_2.fastq.gz 5030115 WGS SMRU2667-sc-2011-01-27-1062880 RANDOM 358247866;371705008 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064069/ERR064069_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064069/ERR064069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064069/6938_6#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064069/ERR064069_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064069/ERR064069_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064069/6938_6#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 917161967 ERS022177 ERX042042 GENOMIC 3651687 754517250 2012-03-19 SC_RUN_6938_6#3 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064069/6938_6#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048002 SC_EXP_6630_3#13 217 b8d97fdf99460cb8d6516375b2884d17 1313 b294f6b3dbdb8f3adc457a5012d61f41;57abd1950924588a98e446e2fff50f1e SAMEA1024209 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048002/ERR048002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048002/ERR048002_2.fastq.gz 3396409 WGS SMRU373-sc-2011-01-27-1060562 RANDOM 200190307;200170310 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048002/ERR048002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048002/ERR048002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048002/6630_3#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048002/ERR048002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048002/ERR048002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048002/6630_3#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 501740714 ERS019531 ERX025065 GENOMIC 2952160 509461350 2011-10-11 SC_RUN_6630_3#13 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048002/6630_3#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047986 SC_EXP_6630_2#21 233 d69debf901dcd6409c4f87511a532e93 1313 ce9d5e8c48b888862c21aea35d293f14;660c7293816756607d5c9b557ea7bb37 SAMEA1024097 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047986/ERR047986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047986/ERR047986_2.fastq.gz 1863921 WGS SMRU309-sc-2011-01-27-1060498 RANDOM 114302172;114296756 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047986/ERR047986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047986/ERR047986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047986/6630_2#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047986/ERR047986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047986/ERR047986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047986/6630_2#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 290714466 ERS019467 ERX025049 GENOMIC 2952096 279588150 2011-10-11 SC_RUN_6630_2#21 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047986/6630_2#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048145 SC_EXP_6631_5#12 201 a5eab53bdd4ae481c8ae0d78adbf916b 1313 f8344a3c8b3a0f72f600d6e0eafe71c8;c0a4459f4405e8395d5714ec89046f85 SAMEA1023696 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048145/ERR048145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048145/ERR048145_2.fastq.gz 5540905 WGS SMRU468-sc-2011-01-27-1060657 RANDOM 300371309;305190963 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048145/ERR048145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048145/ERR048145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048145/6631_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048145/ERR048145_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048145/ERR048145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048145/6631_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 763029380 ERS019626 ERX025208 GENOMIC 3037787 831135750 2011-10-11 SC_RUN_6631_5#12 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048145/6631_5#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054482 SC_EXP_6753_3#22 216 49c2c4a6629bf36527dd94c128c1ef85 1313 70d7e19f3a08381a4426cd41eada93a6;b55f28bc3b95b6b0036470ac990132a6 SAMEA1025669 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054482/ERR054482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054482/ERR054482_2.fastq.gz 4503556 WGS SMRU1534-sc-2011-01-27-1061747 RANDOM 288219065;303915593 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054482/ERR054482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054482/ERR054482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054482/6753_3#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054482/ERR054482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054482/ERR054482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054482/6753_3#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 759690402 ERS021044 ERX031528 GENOMIC 3414219 675533400 2011-11-15 SC_RUN_6753_3#22 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054482/6753_3#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054259 SC_EXP_6710_7#14 233 8cbc1995b3ee6fcfee2b725417fcb9f9 1313 dce88c59f88c941ffd63969ef3bd4e55;184c7da937351d1d7497fdea00ec215c SAMEA1025271 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054259/ERR054259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054259/ERR054259_2.fastq.gz 10736737 WGS SMRU1382-sc-2011-01-27-1061595 RANDOM 614870097;641687836 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054259/ERR054259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054259/ERR054259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054259/6710_7#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054259/ERR054259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054259/ERR054259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054259/6710_7#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1565057756 ERS020892 ERX031305 GENOMIC 3348840 1610510550 2011-11-15 SC_RUN_6710_7#14 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054259/6710_7#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR069640 SC_EXP_7011_5#6 204 6aeb859a6a016edcd286d5fdbbebbda9 1313 26e6bcf6e75633025189955cbfa71f7d;1030299c2ed02baa00cc54b367256ba1 SAMEA1028894 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069640/ERR069640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069640/ERR069640_2.fastq.gz 3795341 WGS SMRU2790-sc-2011-01-27-1063003 RANDOM 248019452;244974859 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069640/ERR069640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069640/ERR069640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069640/7011_5#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069640/ERR069640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069640/ERR069640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069640/7011_5#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 598715042 ERS022300 ERX047493 GENOMIC 3758462 569301150 2012-01-19 SC_RUN_7011_5#6 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069640/7011_5#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR056752 SC_EXP_6805_1#22 215 671cd025d1be1c3036012ecf9ccaa3d2 1313 d83de7d3b62ae8bacf7fdb9326a18786;b08ec3331af66f50454dc7acd554f644 SAMEA1024880 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056752/ERR056752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056752/ERR056752_2.fastq.gz 5196404 WGS SMRU1030-sc-2011-01-27-1061243 RANDOM 248784741;259682593 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056752/ERR056752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056752/ERR056752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056752/6805_1#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056752/ERR056752_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056752/ERR056752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056752/6805_1#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 649436910 ERS020540 ERX034596 GENOMIC 3246205 779460600 2011-11-29 SC_RUN_6805_1#22 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056752/6805_1#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR057867 SC_EXP_6823_2#14 245 2b21690c333e37bf3232171756c3454d 1313 269d0626f6778940fb63b379806e1b1c;46476774d5c229e378251e6ea2d48e2a SAMEA1025794 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057867/ERR057867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057867/ERR057867_2.fastq.gz 7398410 WGS SMRU1886-sc-2011-01-27-1062099 RANDOM 447416541;465230295 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057867/ERR057867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057867/ERR057867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057867/6823_2#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057867/ERR057867_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057867/ERR057867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057867/6823_2#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1159403489 ERS021396 ERX035713 GENOMIC 3469115 1109761500 2012-03-22 SC_RUN_6823_2#14 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057867/6823_2#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056836 SC_EXP_6805_5#10 232 3d03aef797c27587a8588e828468dd88 1313 06f0698e262ff57428a98d006ec8c7c9;6809c6aca10cba7ca31bf96e03102f76 SAMEA1025411 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056836/ERR056836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056836/ERR056836_2.fastq.gz 5088427 WGS SMRU1690-sc-2011-01-27-1061903 RANDOM 261981649;273188987 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056836/ERR056836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056836/ERR056836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056836/6805_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056836/ERR056836_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056836/ERR056836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056836/6805_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 670673454 ERS021200 ERX034680 GENOMIC 3481179 763264050 2011-11-29 SC_RUN_6805_5#10 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056836/6805_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR050074 SC_EXP_6680_8#19 230 f76261e553bae31cdb8b215e69504e70 1313 680db89f7b28c5556f71579d95e5d43a;ec6fe622b88db11dc97a17e6bb9510f1 SAMEA1023885 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050074/ERR050074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050074/ERR050074_2.fastq.gz 5798778 WGS SMRU211-sc-2011-01-27-1060400 RANDOM 340636072;358242092 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050074/ERR050074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050074/ERR050074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050074/6680_8#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050074/ERR050074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050074/ERR050074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050074/6680_8#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 870550643 ERS019369 ERX027134 GENOMIC 2950544 869816700 2011-10-25 SC_RUN_6680_8#19 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050074/6680_8#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR072235 SC_EXP_7054_6#14 234 43aada1636d20e21d1520410074ad373 1313 630dde83115524995eb9cb9bcbdcf0e1;9e6ac807b6681b1664bcef873b9fefd7 SAMEA1029338 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072235/ERR072235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072235/ERR072235_2.fastq.gz 3333497 WGS SMRU3086-sc-2011-01-27-1063299 RANDOM 193563627;204186686 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072235/ERR072235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072235/ERR072235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072235/7054_6#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072235/ERR072235_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072235/ERR072235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072235/7054_6#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 503081115 ERS022596 ERX050001 GENOMIC 3888077 500024550 2012-01-31 SC_RUN_7054_6#14 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072235/7054_6#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR2090851 SC_EXP_22841_2#120 357 c29e3cc41f187faebdd534b50b9d0e88;ed0a3b35746de1ea6a739bdeec8dacfa 1313 0d66f65d3bb2683a3da35ee7f0407c98;f725a24a8e55bfab0a9666b8b4536b0d SAMEA104035700 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090851/ERR2090851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090851/ERR2090851_2.fastq.gz 3111492 WGS b8d1c550-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 70402646;74986495 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090851/ERR2090851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090851/ERR2090851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090851/22841_2#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090851/22841_2#120.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090851/ERR2090851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090851/ERR2090851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090851/22841_2#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090851/22841_2#120.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103442147;5037 ERS1699593 ERX2147645 GENOMIC DN483654V:A4 388936500 2017-08-08 SC_RUN_22841_2#120 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090851/22841_2#120.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090851/22841_2#120.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#120 ERR2305590 SC_EXP_23495_7#34 389 7c9a185461c3929f3b6314db287676be;5ecdb3efe1ac3c353649a0837bce5013 1313 cadbf258c7d25c8b71b3c5a270ce8533;5a7c4016b5b07daeba24734e9aa5af8e SAMEA104034813 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305590/ERR2305590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305590/ERR2305590_2.fastq.gz 1747402 WGS f45ee660-13c3-11e7-942b-3c4a9275d6c8 RANDOM 48689151;54135544 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305590/ERR2305590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305590/ERR2305590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305590/23495_7#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305590/23495_7#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305590/ERR2305590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305590/ERR2305590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305590/23495_7#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305590/23495_7#34.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 73517345;3054 ERS1698706 ERX2356900 GENOMIC DN483688I:B5 263857702 2018-02-16 SC_RUN_23495_7#34 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305590/23495_7#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305590/23495_7#34.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808780 ERR045373 SC_EXP_6486_6#2 232 5199f4b1b1af14dc170de7339ba0f8af 1313 2a9ced247e331827611757e1885a1c37;ab75681dd7b083525b418bc1e9372af4 SAMEA1026650 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045373/ERR045373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045373/ERR045373_2.fastq.gz 8807345 WGS UoS4346-sc-2011-02-14-1078462 RANDOM 478165200;478484964 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045373/ERR045373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045373/ERR045373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045373/6486_6#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045373/ERR045373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045373/ERR045373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045373/6486_6#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1182731117 ERS023408 ERX022435 GENOMIC 2744977 1321101750 2011-09-14 SC_RUN_6486_6#2 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045373/6486_6#2.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_6#2 ERR045416 SC_EXP_6486_8#1 229 c6f580f3bf14ee2e6efb883a1c7de86f 1313 64b4e3d609cfa481bae28b28a868b4a0;b109983f9104e5e3016bfec6b14f53d9 SAMEA1026543 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045416/ERR045416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045416/ERR045416_2.fastq.gz 6852384 WGS UoS5119-sc-2011-03-11-1098960 RANDOM 362059497;365604594 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045416/ERR045416_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045416/ERR045416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045416/6486_8#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045416/ERR045416_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045416/ERR045416_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045416/6486_8#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 905669406 ERS025150 ERX022478 GENOMIC 2745020 1027857600 2011-09-14 SC_RUN_6486_8#1 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045416/6486_8#1.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_8#1 ERR1947844 SC_EXP_21946_6#324 453 b2d1c5ae681cf50643d8fac294a65da7;44e16029ffa251480e1812ff29591bbc 1313 342e826884d53d1467198e7e6fefe397;4bc195ee559b7bbafba2448b58cf4b1c SAMEA4561140 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947844/ERR1947844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947844/ERR1947844_2.fastq.gz 2354412 WGS 0c13c750-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 60473915;84570973 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947844/ERR1947844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947844/ERR1947844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947844/21946_6#324.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947844/21946_6#324.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947844/ERR1947844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947844/ERR1947844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947844/21946_6#324.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947844/21946_6#324.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104029559;3970 ERS1460319 ERX2013631 GENOMIC 18471563 355516212 2017-04-25 SC_RUN_21946_6#324 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947844/21946_6#324.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947844/21946_6#324.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1453738 SC_EXP_19341_3#90 434 b0e70311f4d3810d177541fbb357676b;c57710e29ff78e0bf19af6d23e7e41e7 1313 b12007df259d6c1c8843f2a75c5668bc;b97464d829034bfb7f958b89eed33cc1 SAMEA3714055 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453738/ERR1453738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453738/ERR1453738_2.fastq.gz 2441798 WGS 41665cc0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 51649155;54638163 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453738/ERR1453738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453738/ERR1453738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453738/19341_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453738/19341_3#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453738/ERR1453738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453738/ERR1453738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453738/19341_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453738/19341_3#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75966362;4136 ERS1021204 ERX1524216 GENOMIC 16008437 305224750 2016-06-14 SC_RUN_19341_3#90 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453738/19341_3#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453738/19341_3#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#90 ERR2090805 SC_EXP_22841_2#74 349 f71d3857fcdda7ecf88608ea9d4fabdc;a252179e6d9368c833801fca06ddb1fe 1313 c2b155d59492828c4942e8fd6daedde1;f16d668f6d91ecff0f990c0b5aae4c11 SAMEA104035653 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090805/ERR2090805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090805/ERR2090805_2.fastq.gz 3280662 WGS b28734a0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 73082738;75681173 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090805/ERR2090805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090805/ERR2090805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090805/22841_2#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090805/22841_2#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090805/ERR2090805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090805/ERR2090805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090805/22841_2#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090805/22841_2#74.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105546659;5341 ERS1699546 ERX2147599 GENOMIC DN483653U:B10 410082750 2017-08-08 SC_RUN_22841_2#74 99 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090805/22841_2#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090805/22841_2#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#74 ERR1192156 SC_EXP_17794_8#145 441 eaa5164f2828e91a29fc74c81c427aa7;430eacab583aa0ee83c91a3ae8ae8baa 1313 9fd5378c9974835ccb4c20279332d80e;308a0b4c5693381b503886d66c0c1d5a SAMEA3388913 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192156/ERR1192156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192156/ERR1192156_2.fastq.gz 3000312 WGS GPS_MA_207-sc-2279589 RANDOM 62061515;67093255 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192156/ERR1192156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192156/ERR1192156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192156/17794_8#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192156/17794_8#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192156/ERR1192156_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192156/ERR1192156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192156/17794_8#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192156/17794_8#145.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 102037149;4724 ERS725016 ERX1265540 GENOMIC 14941646 375039000 2015-12-17 SC_RUN_17794_8#145 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192156/17794_8#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192156/17794_8#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#145 ERR1453751 SC_EXP_19341_3#103 428 91a46660fdfd2bce979976ddb019ce07;0d08a1c516192003ff3b0c3652555d82 1313 dd00e229621956e37c1849113b1a7625;e4557b3ba5178b9d9fbb2490415051ae SAMEA3714068 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453751/ERR1453751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453751/ERR1453751_2.fastq.gz 2285440 WGS 41e72580-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 47304281;53475707 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453751/ERR1453751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453751/ERR1453751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453751/19341_3#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453751/19341_3#103.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453751/ERR1453751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453751/ERR1453751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453751/19341_3#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453751/19341_3#103.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72396169;3838 ERS1021217 ERX1524229 GENOMIC 16008536 285680000 2016-06-14 SC_RUN_19341_3#103 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453751/19341_3#103.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453751/19341_3#103.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#103 ERR1065454 SC_EXP_17138_3#64 472 330a1a866d6eebfe501af159a59ae389;8662509632b545d179a61ed709151e56 1313 422601a6027c1f33e0927979c84e1d8f;50516a759e468284c04b3b2f9fde36c5 SAMEA3354213 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065454/ERR1065454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065454/ERR1065454_2.fastq.gz 5875910 WGS GPS_ZA_carriage_SP1954-sc-2278821 RANDOM 121962804;115700773 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065454/ERR1065454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065454/ERR1065454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065454/17138_3#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065454/17138_3#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065454/ERR1065454_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065454/ERR1065454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065454/17138_3#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065454/17138_3#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 182940516;9649 ERS708568 ERX1145604 GENOMIC 14438344 734488750 2015-10-13 SC_RUN_17138_3#64 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065454/17138_3#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065454/17138_3#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#64 ERR1065642 SC_EXP_17150_4#3 458 749c3004d405736bf37ad1cd47314c73;e423bb855a01e4c9316b6dc89056c289 1313 9a51236d3b598ced7aa660396adbcb62;d6615ae75401743a9d2aa8e30dd6f348 SAMEA3353532 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065642/ERR1065642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065642/ERR1065642_2.fastq.gz 5171590 WGS GPS_ZA_carriage_SP1519-sc-2278132 RANDOM 109667942;101973804 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065642/ERR1065642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065642/ERR1065642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065642/17150_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065642/17150_4#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065642/ERR1065642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065642/ERR1065642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065642/17150_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065642/17150_4#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 161755799;8389 ERS707887 ERX1145792 GENOMIC 14436418 646448750 2015-10-13 SC_RUN_17150_4#3 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065642/17150_4#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065642/17150_4#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#3 ERR1065352 SC_EXP_17059_8#56 447 d3ddc3cc9f940fe051ac8dca7728526a;491639ef72c85b055b27f008b46bc20e 1313 b918df8b1cfdea0734ee423874da3daf;4db445fead98e4355cfec046e1d337f7 SAMEA3353465 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065352/ERR1065352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065352/ERR1065352_2.fastq.gz 4707094 WGS GPS_ZA_carriage_SP1384-sc-2278065 RANDOM 83342634;86338831 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065352/ERR1065352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065352/ERR1065352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065352/17059_8#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065352/17059_8#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065352/ERR1065352_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065352/ERR1065352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065352/17059_8#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065352/17059_8#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 134694171;7749 ERS707820 ERX1145502 GENOMIC 14406273 588386750 2015-10-13 SC_RUN_17059_8#56 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065352/17059_8#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065352/17059_8#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#56 ERR1065206 SC_EXP_17059_7#1 465 e77218152594629b771198e63133df26;0e3932f43f7f5d7d241c3147c15f83e2 1313 cea3c053c9a2cce9304ee30c20703ce7;469b31cc717744a420712f7f7e70c427 SAMEA3353346 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065206/ERR1065206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065206/ERR1065206_2.fastq.gz 5083740 WGS GPS_ZA_carriage_SP1235-sc-2277944 RANDOM 96319064;97653983 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065206/ERR1065206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065206/ERR1065206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065206/17059_7#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065206/17059_7#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065206/ERR1065206_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065206/ERR1065206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065206/17059_7#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065206/17059_7#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 159323045;8306 ERS707701 ERX1145356 GENOMIC 14406282 635467500 2015-10-13 SC_RUN_17059_7#1 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065206/17059_7#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065206/17059_7#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#1 ERR1066227 SC_EXP_17175_7#34 468 c7b5a10e7a1888f5130833fd26d62814;e5f0fb33e65b2f9e54453bb650ab0c16 1313 7859f39fc479a1a456aa02d5efcf25cd;41dff8ad94fbd06cd0e098d751f52a7c SAMEA3353966 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066227/ERR1066227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066227/ERR1066227_2.fastq.gz 5106112 WGS GPS_ZA_2829-sc-2278572 RANDOM 93392083;98617290 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066227/ERR1066227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066227/ERR1066227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066227/17175_7#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066227/17175_7#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066227/ERR1066227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066227/ERR1066227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066227/17175_7#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066227/17175_7#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 144130914;8343 ERS708321 ERX1146377 GENOMIC 14427435 638264000 2015-10-13 SC_RUN_17175_7#34 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066227/17175_7#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066227/17175_7#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#34 ERR984272 SC_EXP_16453_2#35 218 1e30e9f18f40a16c1d9ed1f3e7e3b20f;48d8ec5cd7d48aa3e2c6a4f6bfd1d862 1313 ea89eb9a1c5f8dfc25ddc1080756be5d;a205e9ec30bfe0a661fd86da02265f72 SAMEA3309789 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984272/ERR984272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984272/ERR984272_2.fastq.gz 5392204 WGS GPS_GM_1807-sc-2206603 RANDOM 92375218;98563888 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984272/ERR984272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984272/ERR984272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984272/16453_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984272/16453_2#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984272/ERR984272_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984272/ERR984272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984272/16453_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984272/16453_2#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 160517627;8884 ERS686251 ERX1065493 GENOMIC 13843280 674025500 2015-08-18 SC_RUN_16453_2#35 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984272/16453_2#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984272/16453_2#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#35 ERR913099 SC_EXP_15873_1#42 206 3fdb731bb726bfd9fe43f3d1522c3d21;7b8dbc371dd758f07ec18e5d44bc752f 1313 94ef204a3401381c87154facea5d78e8;ef02d80cfd3639405853287e4dd8735f SAMEA3207142 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913099/ERR913099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913099/ERR913099_2.fastq.gz 4847354 WGS GPS_ZA_carriage_SP493-sc-2192080 RANDOM 153698264;160898751 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913099/ERR913099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913099/ERR913099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913099/15873_1#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913099/15873_1#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913099/ERR913099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913099/ERR913099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913099/15873_1#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913099/15873_1#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 254276036;7689 ERS639152 ERX992223 GENOMIC 13227551 484735400 2015-06-17 SC_RUN_15873_1#42 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913099/15873_1#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913099/15873_1#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#42 ERR870036 SC_EXP_15531_4#34 207 7821cb1c8e8cf34d9a7a891f27f779f5;1ca291307da9d4a0e81271bc79a4ba08 1313 a9b4bbf68bd07a2c9a7b460d48b0cfa5;de722d669fba1c5cd6cd6207af28be96 SAMEA3171633 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870036/ERR870036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870036/ERR870036_2.fastq.gz 4808416 WGS GPS_MW_150611-sc-2140027 RANDOM 185071118;175749396 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870036/ERR870036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870036/ERR870036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870036/15531_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870036/15531_4#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870036/ERR870036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870036/ERR870036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870036/15531_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870036/15531_4#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298942839;7824 ERS626024 ERX949637 GENOMIC 12882797 480841600 2015-05-06 SC_RUN_15531_4#34 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870036/15531_4#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870036/15531_4#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#34 ERR774557 SC_EXP_14936_4#84 220 0c7bfb7f911f41799fa8d4a7b9b4492d;f8e4c53ffe88275e490acec12633639d 1313 a2a983bb85d855f9162ecc4837998139;7e3a27e16d563067782859daf9606219 SAMEA2814389 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774557/ERR774557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774557/ERR774557_2.fastq.gz 4147794 WGS GPS_ZA_2601-sc-2138183 RANDOM 153587201;155389300 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774557/ERR774557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774557/ERR774557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774557/14936_4#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774557/14936_4#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774557/ERR774557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774557/ERR774557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774557/14936_4#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774557/14936_4#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257406418;6600 ERS566757 ERX717436 GENOMIC 12347964 414779400 2015-03-03 SC_RUN_14936_4#84 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774557/14936_4#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774557/14936_4#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#84 ERR997492 SC_EXP_16399_5#31 228 acba5b32c74fff80acd1d6b2e720faf4;2154b8f2df4199fd274a349702d866d9 1313 9d72d88e7a3e4d85a30f3d9638f9bc9e;bf3c0c5f6c37769060c12e288b2f6327 SAMEA3309651 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997492/ERR997492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997492/ERR997492_2.fastq.gz 4951726 WGS GPS_GM_1670-sc-2206454 RANDOM 156919564;162729796 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997492/ERR997492_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997492/ERR997492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997492/16399_5#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997492/16399_5#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997492/ERR997492_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997492/ERR997492_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997492/16399_5#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997492/16399_5#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260603545;7955 ERS686113 ERX1076528 GENOMIC 13835539 495172600 2015-09-04 SC_RUN_16399_5#31 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997492/16399_5#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997492/16399_5#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#31 ERR774520 SC_EXP_14936_4#47 220 0f4f2b69b4617c1d0c8ae2d11b9615b1;04e38f655231aab5fb16669d50ec889e 1313 c4d82dbd36859193432ea52d2293f7e5;1ff1723a18caa4fbea8dc08b673ba240 SAMEA2814352 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774520/ERR774520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774520/ERR774520_2.fastq.gz 4556924 WGS GPS_ZA_2564-sc-2138146 RANDOM 166122973;167907020 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774520/ERR774520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774520/ERR774520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774520/14936_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774520/14936_4#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774520/ERR774520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774520/ERR774520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774520/14936_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774520/14936_4#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 277650694;7406 ERS566720 ERX717399 GENOMIC 12347995 455692400 2015-03-03 SC_RUN_14936_4#47 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774520/14936_4#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774520/14936_4#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#47 ERR730417 SC_EXP_14520_6#89 215 0f957575a309f7e9ffe16397c6fbddc5;e3610fb4f247afb5bdacf58ff6a09517 1313 26f024e9c8350cb501e8997059af7d01;9f4144f8160eaf569f8d1fc624758cf7 SAMEA2696566 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730417/ERR730417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730417/ERR730417_2.fastq.gz 5202092 WGS GPS_GM_0797-sc-2022022 RANDOM 191928794;195671049 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730417/ERR730417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730417/ERR730417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730417/14520_6#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730417/14520_6#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730417/ERR730417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730417/ERR730417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730417/14520_6#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730417/14520_6#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320355911;8448 ERS525145 ERX674363 GENOMIC 11983298 520209200 2015-01-14 SC_RUN_14520_6#89 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730417/14520_6#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730417/14520_6#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#89 ERR730367 SC_EXP_14520_6#39 215 6650c6b17e4c86cb8c67c586d364948c;bacd7b6cfa3f4fa1a6cc21a8157c35ac 1313 493b794a183b8d0c8e257ae7e61b5654;71abee451a7bd533809e8cc236612b51 SAMEA2696482 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730367/ERR730367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730367/ERR730367_2.fastq.gz 5522510 WGS GPS_GM_0747-sc-2021937 RANDOM 204982992;209019294 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730367/ERR730367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730367/ERR730367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730367/14520_6#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730367/14520_6#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730367/ERR730367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730367/ERR730367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730367/14520_6#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730367/14520_6#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 341176175;8897 ERS525061 ERX674313 GENOMIC 11983363 552251000 2015-01-14 SC_RUN_14520_6#39 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730367/14520_6#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730367/14520_6#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#39 ERR600253 SC_EXP_13414_3#37 223 84810b67a28e19b1c12012771c3e6b36;025364b2b3af8b4b7c0ef3154ee97e1b 1313 0739c8764f0213ee0e8c6aa2a9e821f1;8f35dac1c56668ba937955b87c91be6e SAMEA2521683 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600253/ERR600253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600253/ERR600253_2.fastq.gz 7122804 WGS 2013215781-sc-1946976 RANDOM 227797436;232776025 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600253/ERR600253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600253/ERR600253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600253/13414_3#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600253/13414_3#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600253/ERR600253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600253/ERR600253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600253/13414_3#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600253/13414_3#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 376252814;11861 ERS455223 ERX557082 GENOMIC 10600643 712280400 2014-09-16 SC_RUN_13414_3#37 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600253/13414_3#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600253/13414_3#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#37 ERR505776 SC_EXP_12291_4#63 230 091ed619ccd478855196bfcb6c895f37;423a74dd39e01fcb0784caed5ccf9a06 1313 2cb4504205bd912ee9774555021b7fc9;2d835a37fa9c3589a2509f6690fa0066 SAMEA2335995 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505776/ERR505776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505776/ERR505776_2.fastq.gz 5327422 WGS 2010220051-sc-1810923 RANDOM 167915741;173628898 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505776/ERR505776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505776/ERR505776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505776/12291_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505776/12291_4#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505776/ERR505776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505776/ERR505776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505776/12291_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505776/12291_4#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280470046;8724 ERS394189 ERX471133 GENOMIC 9444721 532742200 2014-05-19 SC_RUN_12291_4#63 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505776/12291_4#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505776/12291_4#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#63 ERR461804 SC_EXP_11861_5#67 221 e7c859bcc6af777c0e922199d7846bad;d6d5ec1ffcd70152639cc9d4efd2d15b 1313 b184876e3a1d6864249e426a71f1b9a9;ebb801b025a3275ee058250790f4f248 SAMEA2239292 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461804/ERR461804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461804/ERR461804_2.fastq.gz 3848674 WGS 2020169-sc-2013-11-05T12:11:13Z-1750665 RANDOM 119755049;125505571 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461804/ERR461804_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461804/ERR461804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461804/11861_5#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461804/11861_5#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461804/ERR461804_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461804/ERR461804_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461804/11861_5#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461804/11861_5#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 200258232;6296 ERS368104 ERX428145 GENOMIC 9017847 384867400 2014-03-18 SC_RUN_11861_5#67 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461804/11861_5#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461804/11861_5#67.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#67 ERR129186 SC_EXP_7622_5#66 225 5c5eaec370254ac83ba501214a2beef2 1313 ed32a83179012eb4b90c133a4ca7edf7;ec5eb694d97647751907e0b136aa89e1 SAMEA1463150 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129186/ERR129186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129186/ERR129186_2.fastq.gz 2447675 WGS MD5110-sc-2011-11-08T10:08:19Z-1298445 RANDOM 261144870;269462611 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129186/ERR129186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129186/ERR129186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129186/7622_5#66.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129186/ERR129186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129186/ERR129186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129186/7622_5#66.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 515024963 ERS070077 ERX105327 GENOMIC 4336595 489535000 2012-05-28 SC_RUN_7622_5#66 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129186/7622_5#66.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR064141 SC_EXP_6949_1#3 259 fa3be847d491a4048bd4456ac3c12646 1313 26a7d5ce61d4dbf758b151984ee75a45;4f6d69bd97744a367e9a5419522b69dd SAMEA1028878 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064141/ERR064141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064141/ERR064141_2.fastq.gz 6172906 WGS SMRU2403-sc-2011-01-27-1062616 RANDOM 304556530;310684820 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064141/ERR064141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064141/ERR064141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064141/6949_1#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064141/ERR064141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064141/ERR064141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064141/6949_1#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 787120076 ERS021912 ERX042114 GENOMIC 3660679 925935900 2012-03-19 SC_RUN_6949_1#3 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064141/6949_1#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR461698 SC_EXP_11861_4#54 224 f24398dfcb06ec4f8f84aa3197639ee3;9e5cb0d8cc0f61988a2d13be7367df30 1313 42d90c3f980576b384a85c67bf248397;33329fe45c571004b9cdda20ab66bcd8 SAMEA2239000 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461698/ERR461698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461698/ERR461698_2.fastq.gz 3367334 WGS 982064-sc-2013-11-05T12:06:17Z-1750365 RANDOM 104165144;110025944 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461698/ERR461698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461698/ERR461698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461698/11861_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461698/11861_4#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461698/ERR461698_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461698/ERR461698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461698/11861_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461698/11861_4#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 173681819;5646 ERS367812 ERX428039 GENOMIC 9016419 336733400 2014-03-18 SC_RUN_11861_4#54 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461698/11861_4#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461698/11861_4#54.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#54 ERR129174 SC_EXP_7622_5#54 225 60705e19c8880765d03644a116974f1a 1313 3489fc78c1cf0a3cae1d2e3a3c9e7bc7;43fa8705adaf2fd2cf9f45c6c9dfd888 SAMEA1463125 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129174/ERR129174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129174/ERR129174_2.fastq.gz 3022627 WGS MD5045-sc-2011-11-08T10:08:11Z-1298433 RANDOM 320557158;329996343 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129174/ERR129174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129174/ERR129174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129174/7622_5#54.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129174/ERR129174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129174/ERR129174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129174/7622_5#54.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 626872836 ERS070065 ERX105315 GENOMIC 4336583 604525400 2012-05-28 SC_RUN_7622_5#54 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129174/7622_5#54.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR064062 SC_EXP_6938_3#32 233 1a81afd0dbf285093b3f5bb66763de46 1313 e4cce31317153d488be206e723bc8e64;80df086158ddf8d64bae7d5df9e5d0e1 SAMEA1029382 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064062/ERR064062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064062/ERR064062_2.fastq.gz 4098196 WGS SMRU3157-sc-2011-01-27-1063370 RANDOM 277016394;286045223 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064062/ERR064062_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064062/ERR064062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064062/6938_3#32.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064062/ERR064062_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064062/ERR064062_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064062/6938_3#32.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 704663812 ERS022667 ERX042035 GENOMIC 3712399 614729400 2012-03-19 SC_RUN_6938_3#32 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064062/6938_3#32.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063807 SC_EXP_6871_1#22 236 77a3b78956e272b491ab9299a2fedd8e 1313 094b7f24fb93828a916eb916f4243a09;294dbf03ee69ad864c41d887758fe0da SAMEA1025916 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063807/ERR063807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063807/ERR063807_2.fastq.gz 5619915 WGS SMRU1798-sc-2011-01-27-1062011 RANDOM 346646780;341656671 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063807/ERR063807_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063807/ERR063807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063807/6871_1#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063807/ERR063807_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063807/ERR063807_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063807/6871_1#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 878573899 ERS021308 ERX041780 GENOMIC 3481316 842987250 2012-01-05 SC_RUN_6871_1#22 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063807/6871_1#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064014 SC_EXP_6925_7#13 235 ca6c25b6cc5d2498ccb917fc9dafcb93 1313 cfac2f4b6cf24adeb512b9b66d554dfe;a318baa2b7b3f7e7482584d8643349cf SAMEA1028672 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064014/ERR064014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064014/ERR064014_2.fastq.gz 3799626 WGS SMRU2509-sc-2011-01-27-1062722 RANDOM 231913091;234741328 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064014/ERR064014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064014/ERR064014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064014/6925_7#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064014/ERR064014_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064014/ERR064014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064014/6925_7#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 593469082 ERS022019 ERX041987 GENOMIC 3686173 569943900 2012-03-19 SC_RUN_6925_7#13 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064014/6925_7#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064214 SC_EXP_6949_4#4 261 adfd17bece819dca8e135d949e600171 1313 3d230fa7a70b94caac57649f674691b4;c7f47a4728a7797c2ff1338b1452f372 SAMEA1029049 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064214/ERR064214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064214/ERR064214_2.fastq.gz 4350232 WGS SMRU2476-sc-2011-01-27-1062689 RANDOM 222145561;224483634 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064214/ERR064214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064214/ERR064214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064214/6949_4#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064214/ERR064214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064214/ERR064214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064214/6949_4#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 564022877 ERS021986 ERX042187 GENOMIC 3660765 652534800 2012-03-19 SC_RUN_6949_4#4 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064214/6949_4#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054527 SC_EXP_6755_1#19 221 3c91e6b3f7b507626390ec9ce60b7b8b 1313 fcb254bcf1d97659b3b47e7ab4835ae2;270f971b24c3f6a6cc064ccc2631858e SAMEA1024979 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054527/ERR054527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054527/ERR054527_2.fastq.gz 2501723 WGS SMRU787-sc-2011-01-27-1060976 RANDOM 126976983;128615633 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054527/ERR054527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054527/ERR054527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054527/6755_1#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054527/ERR054527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054527/ERR054527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054527/6755_1#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 326283148 ERS020297 ERX031573 GENOMIC 3152296 375258450 2011-11-15 SC_RUN_6755_1#19 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054527/6755_1#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054487 SC_EXP_6753_4#3 212 e12246fd0ee0aaf162f631b765b78f38 1313 7d2f5f9f332503e61ea2eb8ac91011cd;86d4201652cdb226f6c6b4d1aae19669 SAMEA1025611 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054487/ERR054487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054487/ERR054487_2.fastq.gz 6118524 WGS SMRU1539-sc-2011-01-27-1061752 RANDOM 398550864;421512165 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054487/ERR054487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054487/ERR054487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054487/6753_4#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054487/ERR054487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054487/ERR054487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054487/6753_4#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1047515151 ERS021049 ERX031533 GENOMIC 3414225 917778600 2011-11-15 SC_RUN_6753_4#3 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054487/6753_4#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054483 SC_EXP_6753_3#23 216 70a70d39e4d41bca3aea2f5e6e2840d4 1313 b5b6d3c2779fad7f6b084f69a5eac23a;bc42dd586f532f1cf7ae015ca3990397 SAMEA1025637 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054483/ERR054483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054483/ERR054483_2.fastq.gz 6025293 WGS SMRU1535-sc-2011-01-27-1061748 RANDOM 393451969;415322058 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054483/ERR054483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054483/ERR054483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054483/6753_3#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054483/ERR054483_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054483/ERR054483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054483/6753_3#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1012280040 ERS021045 ERX031529 GENOMIC 3414220 903793950 2011-11-15 SC_RUN_6753_3#23 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054483/6753_3#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR067868 SC_EXP_7004_5#5 229 ec80f531d69dd1eac649dd418c44fec8 1313 6d369f0f76842c750d59b877ae8b67c2;f20baac316cf795573b3a6bce822f0ae SAMEA1028628 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067868/ERR067868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067868/ERR067868_2.fastq.gz 2794829 WGS SMRU2861-sc-2011-01-27-1063074 RANDOM 172951402;170644000 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067868/ERR067868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067868/ERR067868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067868/7004_5#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067868/ERR067868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067868/ERR067868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067868/7004_5#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 439400072 ERS022371 ERX045731 GENOMIC 3738311 419224350 2012-01-16 SC_RUN_7004_5#5 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067868/7004_5#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067800 SC_EXP_6972_3#9 229 e2a4f294150a01d34efbfffb78eab919 1313 f6e3bd83faab293af5e74c688d227a70;0d251875968bf56eaa088b623e6f0a04 SAMEA1028845 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067800/ERR067800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067800/ERR067800_2.fastq.gz 4445934 WGS SMRU2577-sc-2011-01-27-1062790 RANDOM 277837855;282395266 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067800/ERR067800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067800/ERR067800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067800/6972_3#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067800/ERR067800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067800/ERR067800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067800/6972_3#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 725498073 ERS022087 ERX045663 GENOMIC 3686250 666890100 2012-01-16 SC_RUN_6972_3#9 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067800/6972_3#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067830 SC_EXP_6972_4#15 234 f5c9263e25b115944ded9862710cf15d 1313 b8403f0a1882bb7fb1dd7c246c092bec;be0b8adbde093037444bc85c02fe51dc SAMEA1028979 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067830/ERR067830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067830/ERR067830_2.fastq.gz 4564825 WGS SMRU2607-sc-2011-01-27-1062820 RANDOM 285667493;292845558 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067830/ERR067830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067830/ERR067830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067830/6972_4#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067830/ERR067830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067830/ERR067830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067830/6972_4#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 735136022 ERS022117 ERX045693 GENOMIC 3686282 684723750 2012-01-16 SC_RUN_6972_4#15 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067830/6972_4#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069761 SC_EXP_6999_4#10 244 e0d9154d33a7286d697c98b0780ac737 1313 2f7f24378ac75f9b0d80484079844cf2;b98b89f217111c0f0e86a05378267304 SAMEA1032710 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069761/ERR069761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069761/ERR069761_2.fastq.gz 4688403 WGS 103453-sc-2011-08-01T09:45:19Z-1250132 RANDOM 265514527;269785539 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069761/ERR069761_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069761/ERR069761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069761/6999_4#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069761/ERR069761_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069761/ERR069761_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069761/6999_4#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 690938395 ERS044067 ERX047614 GENOMIC 3736983 703260450 2012-01-19 SC_RUN_6999_4#10 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069761/6999_4#10.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR069751 SC_EXP_6999_3#23 248 3632958c685b590e81fcfe8bffc37af6 1313 040ba0a3eb3206aea74bd8768a056ba6;119ef160b7d9b4dab02b2123047595c4 SAMEA1032698 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069751/ERR069751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069751/ERR069751_2.fastq.gz 5482827 WGS 072782-sc-2011-08-01T09:45:13Z-1250122 RANDOM 306884111;314495288 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069751/ERR069751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069751/ERR069751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069751/6999_3#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069751/ERR069751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069751/ERR069751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069751/6999_3#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 806208128 ERS044057 ERX047604 GENOMIC 3736972 822424050 2012-01-19 SC_RUN_6999_3#23 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069751/6999_3#23.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR066367 SC_EXP_6983_8#96 237 09efa61e8ace91503010a7068b184822 1313 b3a3086d55a2c3ca317455edd86748b5;c5d62eb8b1f4ad25a98ad6dfa111186a SAMEA1028744 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066367/ERR066367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066367/ERR066367_2.fastq.gz 6305741 WGS SMRU2400-sc-2011-01-27-1062613 RANDOM 437643243;442187031 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066367/ERR066367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066367/ERR066367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066367/6983_8#96.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066367/ERR066367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066367/ERR066367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066367/6983_8#96.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1101181751 ERS021909 ERX044230 GENOMIC 3596178 945861150 2012-03-19 SC_RUN_6983_8#96 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066367/6983_8#96.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057926 SC_EXP_6823_5#1 245 30fc0de6af63f2d6109722c763aac5cc 1313 0d2dec3fcc4d83fdce7a697ba97216c1;9b318d78d45140f53730421a3e91e664 SAMEA1025898 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057926/ERR057926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057926/ERR057926_2.fastq.gz 6303925 WGS SMRU1945-sc-2011-01-27-1062158 RANDOM 376284789;389836070 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057926/ERR057926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057926/ERR057926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057926/6823_5#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057926/ERR057926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057926/ERR057926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057926/6823_5#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 970492343 ERS021455 ERX035772 GENOMIC 3469174 945588750 2012-03-22 SC_RUN_6823_5#1 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057926/6823_5#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056773 SC_EXP_6805_2#19 234 51b6e46e2755c6deda4fd279be755254 1313 1c97142a113efb012dda26d135018c65;451b75dcb8645416fd4022d1a247bcf5 SAMEA1025466 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056773/ERR056773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056773/ERR056773_2.fastq.gz 7266319 WGS SMRU1435-sc-2011-01-27-1061648 RANDOM 372446469;391521654 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056773/ERR056773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056773/ERR056773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056773/6805_2#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056773/ERR056773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056773/ERR056773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056773/6805_2#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 956131157 ERS020945 ERX034617 GENOMIC 3441193 1089947850 2011-11-29 SC_RUN_6805_2#19 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056773/6805_2#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056762 SC_EXP_6805_2#8 234 0578848f4fe2be6908d8b43ec83506ba 1313 5b2cfa9eb4f3a3f0f4f9f03325201793;85ef2d970efd7eab56744b2f72eb9f7e SAMEA1025619 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056762/ERR056762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056762/ERR056762_2.fastq.gz 5826733 WGS SMRU1424-sc-2011-01-27-1061637 RANDOM 299830881;314363564 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056762/ERR056762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056762/ERR056762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056762/6805_2#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056762/ERR056762_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056762/ERR056762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056762/6805_2#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 766033751 ERS020934 ERX034606 GENOMIC 3441182 874009950 2011-11-29 SC_RUN_6805_2#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056762/6805_2#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056849 SC_EXP_6805_5#23 232 27c3f3d33b64ab59502f826ab15b3864 1313 841e2586ff6b35978d05786b0611f8cc;dbca68297e8acd0d54a21177628fde77 SAMEA1025173 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056849/ERR056849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056849/ERR056849_2.fastq.gz 7122205 WGS SMRU1703-sc-2011-01-27-1061916 RANDOM 347540297;360975396 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056849/ERR056849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056849/ERR056849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056849/6805_5#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056849/ERR056849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056849/ERR056849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056849/6805_5#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 903690534 ERS021213 ERX034693 GENOMIC 3481192 1068330750 2011-11-29 SC_RUN_6805_5#23 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056849/6805_5#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR047142 SC_EXP_6569_8#18 247 356ed8aba51dddce17acde5cbd239872 1313 c45fd10f4bb193f4c1084684df2f2adc;1d9a23d27dbf97256f037542376991b0 SAMEA1026564 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047142/ERR047142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047142/ERR047142_2.fastq.gz 6593499 WGS UoS5109-sc-2011-03-11-1098955 RANDOM 396640282;428538933 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047142/ERR047142_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047142/ERR047142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047142/6569_8#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047142/ERR047142_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047142/ERR047142_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047142/6569_8#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1068975466 ERS025145 ERX024204 GENOMIC 2744174 989024850 2011-09-27 SC_RUN_6569_8#18 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047142/6569_8#18.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_8#18 ERR046147 SC_EXP_6512_5#4 242 3a88bbc449a38d7e130dd5f410c7cfba 1313 61cf01c041f4982f3c8b22a292652b49;ecd6bed414fa2205eb5a0300d2e3dcb7 SAMEA1026497 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046147/ERR046147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046147/ERR046147_2.fastq.gz 8275437 WGS UoS4015-sc-2011-02-14-1078376 RANDOM 440300363;435913733 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046147/ERR046147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046147/ERR046147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046147/6512_5#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046147/ERR046147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046147/ERR046147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046147/6512_5#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1101551302 ERS023322 ERX023209 GENOMIC 2735025 1241315550 2011-09-20 SC_RUN_6512_5#4 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046147/6512_5#4.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_5#4 ERR047123 SC_EXP_6569_7#20 252 5bea082e322eb88b7537cbf5ada21c24 1313 45c63ea3258b3f232a649ff9989bd1fe;d3a80a3e00b52ccabf96f949df460f55 SAMEA1026423 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047123/ERR047123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047123/ERR047123_2.fastq.gz 2177140 WGS UoS5234-sc-2011-03-11-1099001 RANDOM 123116823;121088284 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047123/ERR047123_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047123/ERR047123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047123/6569_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047123/ERR047123_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047123/ERR047123_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047123/6569_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 312129896 ERS025191 ERX024185 GENOMIC 2744147 326571000 2011-09-27 SC_RUN_6569_7#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047123/6569_7#20.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_7#20 ERR046138 SC_EXP_6512_4#19 241 af88004a7d6d067543ec050d021ad192 1313 fb82ca5307d28277513265cb8fe31b7d;07e47f865b632b3838b1953a3d74d6ac SAMEA1026668 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046138/ERR046138_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046138/ERR046138_2.fastq.gz 7506039 WGS UoS3315-sc-2011-02-14-1078367 RANDOM 388648772;383037225 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046138/ERR046138_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046138/ERR046138_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046138/6512_4#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046138/ERR046138_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046138/ERR046138_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046138/6512_4#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 972902921 ERS023313 ERX023200 GENOMIC 2734985 1125905850 2011-09-20 SC_RUN_6512_4#19 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046138/6512_4#19.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_4#19 ERR046117 SC_EXP_6512_3#22 204 becc242d36348a9ac593b5f5bd412094 1313 a4d62dee1f4c05a7d466f3b36270a704;3aa7fc077636e9d5110ba2f9a8f44443 SAMEA1026841 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046117/ERR046117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046117/ERR046117_2.fastq.gz 6111435 WGS UoS3251-sc-2011-02-14-1078346 RANDOM 364955064;368066080 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046117/ERR046117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046117/ERR046117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046117/6512_3#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046117/ERR046117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046117/ERR046117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046117/6512_3#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 935911150 ERS023292 ERX023179 GENOMIC 2734321 916715250 2011-09-20 SC_RUN_6512_3#22 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046117/6512_3#22.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#22 ERR044890 SC_EXP_6470_4#9 189 05c5c9953eb91adf56bd4d7c7bf6e884 1313 7de60f03982bc0ae2301e4b7d4aa39e7;b225a8152c7d4575ae0a4717c83f5356 SAMEA1026555 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044890/ERR044890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044890/ERR044890_2.fastq.gz 6818487 WGS UoS0145-sc-2011-02-14-1078093 RANDOM 349267937;360438952 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044890/ERR044890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044890/ERR044890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044890/6470_4#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044890/ERR044890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044890/ERR044890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044890/6470_4#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 941509345 ERS023038 ERX021998 GENOMIC 2719120 1022773050 2011-09-06 SC_RUN_6470_4#9 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044890/6470_4#9.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_4#9 ERR2612039 SC_EXP_23164_8#79 382 c2b93097d44e55a88fd4eb02fef4300f;8ee6af0f33744a840580403b3f9831e2 1313 6e3d3a63b6ef6bb2a68abc438a1fca97;0eb4185103459808507b403f3bcaadb8 SAMEA4707868 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/009/ERR2612039/ERR2612039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/009/ERR2612039/ERR2612039_2.fastq.gz 3907498 WGS b9f96570-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 77777702;80848701 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/009/ERR2612039/ERR2612039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/009/ERR2612039/ERR2612039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612039/23164_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612039/23164_8#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/009/ERR2612039/ERR2612039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/009/ERR2612039/ERR2612039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612039/23164_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612039/23164_8#79.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 112916707;6326 ERS2528028 ERX2628694 GENOMIC DN488670S:H1 488437250 2018-06-04 SC_RUN_23164_8#79 99 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612039/23164_8#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612039/23164_8#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#79 ERR2305541 SC_EXP_22984_8#79 353 baf443ae34d2924e57d4d964a52f0dde;d392ac6400f160f65765b2ed9ac93c6c 1313 58e5cdcb8c37972c85b48f7467ed2a13;48a971cd3f9e145f8124e2504a4ad2ac SAMEA104035049 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305541/ERR2305541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305541/ERR2305541_2.fastq.gz 2261636 WGS 04140c70-13c4-11e7-942b-3c4a9275d6c8 RANDOM 61689968;82177189 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305541/ERR2305541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305541/ERR2305541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305541/22984_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305541/22984_8#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305541/ERR2305541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305541/ERR2305541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305541/22984_8#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305541/22984_8#79.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105575841;3876 ERS1698942 ERX2356851 GENOMIC DN483712O:G10 341507036 2018-02-16 SC_RUN_22984_8#79 92 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305541/22984_8#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305541/22984_8#79.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809018 ERR2305326 SC_EXP_22695_3#285 438 bde3fdcb63e3eb425ab74901d854d9d9;a35bb0d6728b11673ea23e615686c227 1313 6a7204c29e5409b6a113a21e11b075e3;d8bbf23148496c115e44c756ed772e3a SAMEA104034969 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305326/ERR2305326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305326/ERR2305326_2.fastq.gz 1849072 WGS fd74a500-13c3-11e7-942b-3c4a9275d6c8 RANDOM 49542993;67330200 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305326/ERR2305326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305326/ERR2305326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305326/22695_3#285.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305326/22695_3#285.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305326/ERR2305326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305326/ERR2305326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305326/22695_3#285.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305326/22695_3#285.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 85368789;3205 ERS1698862 ERX2356636 GENOMIC DN477146R:G12 279209872 2018-02-16 SC_RUN_22695_3#285 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305326/22695_3#285.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305326/22695_3#285.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808937 ERR2090658 SC_EXP_22841_1#117 440 7b5b49c44eaa61ecce14070a41456645;258e344528381debf8aa8c8630231a0f 1313 d6dda34c409dc38f399b3b123d8db1d2;d6a305a316fddf4b2f68d6d99c2a27a7 SAMEA104035503 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090658/ERR2090658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090658/ERR2090658_2.fastq.gz 2735910 WGS a74f0b30-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 54564405;59018558 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090658/ERR2090658_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090658/ERR2090658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090658/22841_1#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090658/22841_1#117.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090658/ERR2090658_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090658/ERR2090658_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090658/22841_1#117.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090658/22841_1#117.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79601722;4494 ERS1699396 ERX2147452 GENOMIC DN477156T:F3 341988750 2017-08-08 SC_RUN_22841_1#117 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090658/22841_1#117.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090658/22841_1#117.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#117 ERR2090568 SC_EXP_22841_1#27 411 bd54a86df1f8008a609615feabe83bc8;83c0dbef97f42f809aced759ebe0300a 1313 02d32c9b6f658ae7c1df8333352cd9e5;93060f8fde7ef1e31f36c5b8a022eabf SAMEA104035220 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090568/ERR2090568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090568/ERR2090568_2.fastq.gz 2260846 WGS 8f07ae60-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 44963432;45723008 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090568/ERR2090568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090568/ERR2090568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090568/22841_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090568/22841_1#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090568/ERR2090568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090568/ERR2090568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090568/22841_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090568/22841_1#27.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62847732;3775 ERS1699113 ERX2147362 GENOMIC DN477155S:C4 282605750 2017-08-08 SC_RUN_22841_1#27 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090568/22841_1#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090568/22841_1#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#27 ERR1947738 SC_EXP_21946_6#218 473 94b952bba81a0f6e8ded6f8f4df1816b;e6c5208bb679ca1c35e8a28361f21404 1313 4453a7894224b2301e80a3c2d5032298;a755db06e0efab4dbe084eaf798283be SAMEA4561033 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947738/ERR1947738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947738/ERR1947738_2.fastq.gz 2252724 WGS 030386f0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57957589;82766769 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947738/ERR1947738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947738/ERR1947738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947738/21946_6#218.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947738/21946_6#218.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947738/ERR1947738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947738/ERR1947738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947738/21946_6#218.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947738/21946_6#218.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104089227;3887 ERS1460212 ERX2013525 GENOMIC 18471391 340161324 2017-04-25 SC_RUN_21946_6#218 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947738/21946_6#218.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947738/21946_6#218.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947725 SC_EXP_21946_6#205 467 9e8fe4d4c9cd75e46e45767abbba70d6;59a214b84da120a711b22d993c098076 1313 e183b49059e8631b208ac7f4c01cbc79;17670ce659e3b0e78822c43aaad5e02f SAMEA4561020 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947725/ERR1947725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947725/ERR1947725_2.fastq.gz 2297720 WGS 028974f0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58764533;82698190 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947725/ERR1947725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947725/ERR1947725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947725/21946_6#205.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947725/21946_6#205.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947725/ERR1947725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947725/ERR1947725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947725/21946_6#205.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947725/21946_6#205.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103651164;3941 ERS1460199 ERX2013512 GENOMIC 18471330 346955720 2017-04-25 SC_RUN_21946_6#205 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947725/21946_6#205.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947725/21946_6#205.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947225 SC_EXP_21903_8#71 405 f3afdd6c4dde98ba4720b39f22682ba9;a7a833c13f2c9c4a4edddb707174a927 1313 d9203375533868c3dc200a5c0f41be93;c33a62fcd2f28854170363182d139181 SAMEA4561251 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947225/ERR1947225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947225/ERR1947225_2.fastq.gz 2967368 WGS 1511df40-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 71625069;102540009 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947225/ERR1947225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947225/ERR1947225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947225/21903_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947225/21903_8#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947225/ERR1947225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947225/ERR1947225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947225/21903_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947225/21903_8#71.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 126496898;4961 ERS1460430 ERX2013012 GENOMIC 18430269 448072568 2017-04-25 SC_RUN_21903_8#71 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947225/21903_8#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947225/21903_8#71.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947324 SC_EXP_21903_8#170 416 4e36b544742eaab1e3af74cc906d4a8c;a718b00d82627698fb1b4077ba092614 1313 2f2dcd0837a035e3279a21057f9666cc;5977bc1dc9635ade49d27fe268272835 SAMEA4561351 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947324/ERR1947324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947324/ERR1947324_2.fastq.gz 1943328 WGS 1e2f8d20-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 48383056;70171923 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947324/ERR1947324_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947324/ERR1947324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947324/21903_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947324/21903_8#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947324/ERR1947324_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947324/ERR1947324_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947324/21903_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947324/21903_8#170.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 86961411;3345 ERS1460530 ERX2013111 GENOMIC 18430355 293442528 2017-04-25 SC_RUN_21903_8#170 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947324/21903_8#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947324/21903_8#170.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947603 SC_EXP_21946_6#83 460 adf1597a7c23f173cf566e12d224929a;1a4d5d35b557a52750ec7ce64f2ea519 1313 33006b3a7692e76b298f9eee12dfeac3;5205c0822721d5f32cf913b302a2ef00 SAMEA17659918 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947603/ERR1947603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947603/ERR1947603_2.fastq.gz 2102450 WGS 3858c950-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 54535680;76686121 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947603/ERR1947603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947603/ERR1947603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947603/21946_6#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947603/21946_6#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947603/ERR1947603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947603/ERR1947603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947603/21946_6#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947603/21946_6#83.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 95157578;3560 ERS1461661 ERX2013390 GENOMIC 18471652 317469950 2017-04-25 SC_RUN_21946_6#83 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947603/21946_6#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947603/21946_6#83.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1453674 SC_EXP_19341_3#26 471 00276c2ba4a4df6eb2bb79b8afd6ecdf;fe0aa974226ed0d308eb480bdd7d6700 1313 b603f987390dfdf8580c891919de2827;3820bae9ba0f47638386bec094830fae SAMEA3713963 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453674/ERR1453674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453674/ERR1453674_2.fastq.gz 2218410 WGS 39c87110-41bd-11e5-998e-3c4a9275d6c6 RANDOM 47715806;52443179 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453674/ERR1453674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453674/ERR1453674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453674/19341_3#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453674/19341_3#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/004/ERR1453674/ERR1453674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/004/ERR1453674/ERR1453674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453674/19341_3#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453674/19341_3#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71085953;3760 ERS1021112 ERX1524152 GENOMIC 16008429 277301250 2016-06-14 SC_RUN_19341_3#26 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453674/19341_3#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453674/19341_3#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#26 ERR1453744 SC_EXP_19341_3#96 424 7255d421203f25b8423e66062ac77dbc;4fcf93086500654000d4e58982529109 1313 5f80a6258e4d28fb71450d1ace627ad8;ad2e9a4e2fcd5f65d7863a521fea6a0d SAMEA3714061 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453744/ERR1453744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453744/ERR1453744_2.fastq.gz 2821040 WGS 41a98040-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 56113463;62608721 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453744/ERR1453744_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453744/ERR1453744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453744/19341_3#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453744/19341_3#96.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/004/ERR1453744/ERR1453744_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/004/ERR1453744/ERR1453744_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453744/19341_3#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453744/19341_3#96.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85808729;4746 ERS1021210 ERX1524222 GENOMIC 16008547 352630000 2016-06-14 SC_RUN_19341_3#96 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453744/19341_3#96.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453744/19341_3#96.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#96 ERR1422676 SC_EXP_19084_8#163 385 17bef3ab5a749e82e94cba034f17578d;ad53f4a5ce9b4a38385fe5c3b5634986 1313 8ba22e465141bbd09e8549ff1dc69d1e;a887d3b0decb3ae162cc8e154d543895 SAMEA3714500 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422676/ERR1422676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422676/ERR1422676_2.fastq.gz 3299914 WGS 55ec6bd0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 71066022;68190408 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422676/ERR1422676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422676/ERR1422676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422676/19084_8#163.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422676/19084_8#163.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422676/ERR1422676_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422676/ERR1422676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422676/19084_8#163.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422676/19084_8#163.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103084100;5558 ERS1021649 ERX1493258 GENOMIC 15758586 412489250 2016-05-24 SC_RUN_19084_8#163 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422676/19084_8#163.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422676/19084_8#163.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#163 ERR1422558 SC_EXP_19084_8#45 436 4d13dca232619ceb06d6e20d2b6c82b1;b00d8989e955fa7fc00bb8ac19395f36 1313 36a3baa9f1145d03bf275fa347babbf8;af57ad2e01dd54ab9d244bdeb5d04c77 SAMEA3714382 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422558/ERR1422558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422558/ERR1422558_2.fastq.gz 2639606 WGS 4e4ef550-41bd-11e5-998e-3c4a9275d6c6 RANDOM 59229259;59826260 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422558/ERR1422558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422558/ERR1422558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422558/19084_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422558/19084_8#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422558/ERR1422558_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422558/ERR1422558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422558/19084_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422558/19084_8#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86802754;4477 ERS1021531 ERX1493140 GENOMIC 15758430 329950750 2016-05-24 SC_RUN_19084_8#45 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422558/19084_8#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422558/19084_8#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#45 ERR1288894 SC_EXP_18456_1#85 459 6ad527c805076b6a23f2e1dc9c085ab4;0ef88515341d780e2a073969fad34994 1313 57ebb55ecd0b92c00cd9d923470fe98e;6c7b99d1434f223a085278025a0c6a9a SAMEA3389173 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288894/ERR1288894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288894/ERR1288894_2.fastq.gz 2348862 WGS GPS_MW_153471-sc-2295646 RANDOM 55189896;50830282 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288894/ERR1288894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288894/ERR1288894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288894/18456_1#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288894/18456_1#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288894/ERR1288894_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288894/ERR1288894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288894/18456_1#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288894/18456_1#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74531270;3928 ERS725276 ERX1360500 GENOMIC 14970338 293607750 2016-02-23 SC_RUN_18456_1#85 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288894/18456_1#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288894/18456_1#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#85 ERR1214555 SC_EXP_18090_2#47 454 90c2b13e541bbc32813f48cb15e57600;71b26b7c177f9bd817851342b4f65f0b 1313 86298e8fd4933f90d2e21127b5e27a39;26d463c71cbfa13fa46f3394038787fa SAMEA3431446 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214555/ERR1214555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214555/ERR1214555_2.fastq.gz 2327758 WGS GPS_HK_49-sc-2296620 RANDOM 47594831;49592335 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214555/ERR1214555_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/005/ERR1214555/ERR1214555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214555/18090_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214555/18090_2#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/005/ERR1214555/ERR1214555_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/005/ERR1214555/ERR1214555_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214555/18090_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214555/18090_2#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68890021;3938 ERS740731 ERX1286768 GENOMIC 15080004 290969750 2016-01-19 SC_RUN_18090_2#47 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214555/18090_2#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214555/18090_2#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#47 ERR1288864 SC_EXP_18456_1#55 459 213241ff3910b760d5bd8ed6a6081eba;8aa714e624672950b07b8aaaf9094356 1313 cbc262608851625e9f09adfaa58eb16c;5d5548e4a34a3608a9e911c0a1d3aee1 SAMEA3389278 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288864/ERR1288864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288864/ERR1288864_2.fastq.gz 2265810 WGS GPS_MW_150836-sc-2295751 RANDOM 54585191;48103210 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288864/ERR1288864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288864/ERR1288864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288864/18456_1#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288864/18456_1#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288864/ERR1288864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288864/ERR1288864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288864/18456_1#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288864/18456_1#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72407712;3857 ERS725381 ERX1360470 GENOMIC 14970358 283226250 2016-02-23 SC_RUN_18456_1#55 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288864/18456_1#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288864/18456_1#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#55 ERR1202184 SC_EXP_17870_7#114 463 626c89a37a9fe9bea631ea17ef05d5ad;bc33e2d871d3a3cd651c4530ff53967d 1313 374405b19e1a447b0bf4cc54244fe6c8;49f5a152f51ec02e8a05fe306e34794f SAMEA3389666 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202184/ERR1202184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202184/ERR1202184_2.fastq.gz 2300880 WGS GPS_MW_1255_UNC-sc-2295908 RANDOM 42624975;46229179 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202184/ERR1202184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/004/ERR1202184/ERR1202184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202184/17870_7#114.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202184/17870_7#114.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202184/ERR1202184_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/004/ERR1202184/ERR1202184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202184/17870_7#114.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202184/17870_7#114.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66455293;3910 ERS725769 ERX1274426 GENOMIC 14978397 287610000 2016-01-12 SC_RUN_17870_7#114 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202184/17870_7#114.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202184/17870_7#114.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#114 ERR1202177 SC_EXP_17870_7#107 463 bc1c54064dc89292f439fcdfe11d010b;32cdb08a723d258a9d51c7255c9d4ac6 1313 31d395bd4f4db957ba9819c418e292e8;99400ec7fb2b72f4a5879bf0038e6bff SAMEA3389651 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202177/ERR1202177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202177/ERR1202177_2.fastq.gz 2334284 WGS GPS_MW_BND1G7-sc-2295893 RANDOM 44040122;47048977 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202177/ERR1202177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202177/ERR1202177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202177/17870_7#107.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202177/17870_7#107.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/007/ERR1202177/ERR1202177_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/007/ERR1202177/ERR1202177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202177/17870_7#107.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202177/17870_7#107.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68677567;3965 ERS725754 ERX1274419 GENOMIC 14978408 291785500 2016-01-12 SC_RUN_17870_7#107 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202177/17870_7#107.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202177/17870_7#107.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#107 ERR1192181 SC_EXP_17794_8#170 441 84540fae7ae6fcf57a5313b76a5fc593;f2175cb2ce0a103e4564fb93dddb4f02 1313 9f4d5547680741a2c062f4c8066ba385;785394c2312b7d48773798a8c8336517 SAMEA3389139 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192181/ERR1192181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192181/ERR1192181_2.fastq.gz 3080712 WGS GPS_MW_155897-sc-2295612 RANDOM 55790609;60452255 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192181/ERR1192181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192181/ERR1192181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192181/17794_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192181/17794_8#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192181/ERR1192181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192181/ERR1192181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192181/17794_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192181/17794_8#170.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91130194;5094 ERS725242 ERX1265565 GENOMIC 14941673 385089000 2015-12-17 SC_RUN_17794_8#170 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192181/17794_8#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192181/17794_8#170.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#170 ERR1106737 SC_EXP_17428_8#114 478 7a4456dea2c8d5b8900307ed0ad3f294;95923f6b714f30f5c0a295d122437f8a 1313 89aa90085987d7d4bbe467055345fadf;4b20f2b16f1b4bb8726a52a1b81b34ab SAMEA3381328 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106737/ERR1106737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106737/ERR1106737_2.fastq.gz 2373638 WGS GPS_GM_1840-sc-2279140 RANDOM 42789047;44747969 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106737/ERR1106737_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/007/ERR1106737/ERR1106737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106737/17428_8#114.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106737/17428_8#114.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/007/ERR1106737/ERR1106737_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/007/ERR1106737/ERR1106737_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106737/17428_8#114.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106737/17428_8#114.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67175349;3970 ERS719587 ERX1186268 GENOMIC 14702543 296704750 2015-11-03 SC_RUN_17428_8#114 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106737/17428_8#114.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106737/17428_8#114.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#114 ERR1106751 SC_EXP_17428_8#128 478 beabad8c2b9c4299ee5d9f18cc1bc29b;c006ceb3d2a3c18334aea026d0518bd8 1313 99c88d42183a7314df134cac6c692391;61229b359a7782f4da750ad55cb4bc00 SAMEA3381342 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/001/ERR1106751/ERR1106751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/001/ERR1106751/ERR1106751_2.fastq.gz 2349032 WGS GPS_GM_1854-sc-2279169 RANDOM 41694717;43986348 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/001/ERR1106751/ERR1106751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/001/ERR1106751/ERR1106751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106751/17428_8#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106751/17428_8#128.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/001/ERR1106751/ERR1106751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/001/ERR1106751/ERR1106751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106751/17428_8#128.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106751/17428_8#128.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66594403;3984 ERS719601 ERX1186282 GENOMIC 14702521 293629000 2015-11-03 SC_RUN_17428_8#128 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106751/17428_8#128.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106751/17428_8#128.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#128 ERR1066155 SC_EXP_17175_6#53 449 c46d609a2597da127935383ceecbf683;5d55a1268e9f03a724313e990fd2ea21 1313 795eb30c44e78c4d25ff26a0c62733dc;80bd4c353fc5a48ab658ff544b81a8d2 SAMEA3353820 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066155/ERR1066155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066155/ERR1066155_2.fastq.gz 5185508 WGS GPS_ZA_carriage_SP1756-sc-2278424 RANDOM 99780154;103080970 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066155/ERR1066155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066155/ERR1066155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066155/17175_6#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066155/17175_6#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066155/ERR1066155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066155/ERR1066155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066155/17175_6#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066155/17175_6#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 155946816;8446 ERS708175 ERX1146305 GENOMIC 14427558 648188500 2015-10-13 SC_RUN_17175_6#53 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066155/17175_6#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066155/17175_6#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#53 ERR1066085 SC_EXP_17175_5#73 463 fc7fd0a63c7b7159049ad3cd808f3b38;5c68f62f7f68553bf3d78a34db2ebd32 1313 f5fe8eb72e6935d90ef4545de1456f29;72cd9f6ef2aa2291af8f619356ebd9fb SAMEA3353682 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066085/ERR1066085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066085/ERR1066085_2.fastq.gz 4155400 WGS GPS_ZA_carriage_SP1685-sc-2278284 RANDOM 78414287;81241688 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066085/ERR1066085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066085/ERR1066085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066085/17175_5#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066085/17175_5#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066085/ERR1066085_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066085/ERR1066085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066085/17175_5#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066085/17175_5#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 123020911;6864 ERS708037 ERX1146235 GENOMIC 14423423 519425000 2015-10-13 SC_RUN_17175_5#73 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066085/17175_5#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066085/17175_5#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#73 ERR1065695 SC_EXP_17150_4#56 458 8ac587998e80be22929eab620483f3eb;3892b4b73dcde7205fae85d9452c2769 1313 dfd45f7a501c15df71db04ae58ede833;b2bddbe0a88fae6aa03130050202555c SAMEA3353641 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065695/ERR1065695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065695/ERR1065695_2.fastq.gz 5589988 WGS GPS_ZA_carriage_SP1572-sc-2278243 RANDOM 109617728;108045454 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065695/ERR1065695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065695/ERR1065695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065695/17150_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065695/17150_4#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065695/ERR1065695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065695/ERR1065695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065695/17150_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065695/17150_4#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 167909792;9224 ERS707996 ERX1145845 GENOMIC 14436484 698748500 2015-10-13 SC_RUN_17150_4#56 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065695/17150_4#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065695/17150_4#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#56 ERR1065510 SC_EXP_17138_4#27 472 ef041589f8cf41629e94ed7604f2118b;12734b6f36d69138e459a7646ba0052b 1313 7b0beeced88456ebab3bd7ba159a1c5d;78d9572d5e44c213ab238534b387a382 SAMEA3354309 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065510/ERR1065510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065510/ERR1065510_2.fastq.gz 4859286 WGS GPS_ZA_carriage_SP1999-sc-2278920 RANDOM 99711515;99080822 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065510/ERR1065510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065510/ERR1065510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065510/17138_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065510/17138_4#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065510/ERR1065510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065510/ERR1065510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065510/17138_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065510/17138_4#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 151903876;7972 ERS708664 ERX1145660 GENOMIC 14468580 607410750 2015-10-13 SC_RUN_17138_4#27 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065510/17138_4#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065510/17138_4#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#27 ERR1065959 SC_EXP_17175_4#40 467 976e445306a7e1cccc08a5ce9ef9eb8c;91a576fbaceaf04f4880a04e4b568349 1313 518ff8a0ee4cc0115957b8e2733a56ab;6d931f4ce9123f9e51d635f5f6fb1762 SAMEA3353427 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065959/ERR1065959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065959/ERR1065959_2.fastq.gz 4842470 WGS GPS_ZA_carriage_SP1465-sc-2278027 RANDOM 88535245;90489536 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065959/ERR1065959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065959/ERR1065959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065959/17175_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065959/17175_4#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065959/ERR1065959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065959/ERR1065959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065959/17175_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065959/17175_4#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 137214606;7959 ERS707782 ERX1146109 GENOMIC 14436385 605308750 2015-10-13 SC_RUN_17175_4#40 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065959/17175_4#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065959/17175_4#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#40 ERR1065380 SC_EXP_17059_8#84 447 74f49cbaa59bb60ddc29c6508b9e7c9c;b7fc224e6b691a4ad5fc57b9456e2c40 1313 8d10325aa9d1d40c4fba7a87aad4bbba;357097aa62ccb0bcbfe7b6b8ab990dbf SAMEA3353521 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065380/ERR1065380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065380/ERR1065380_2.fastq.gz 4941532 WGS GPS_ZA_carriage_SP1412-sc-2278121 RANDOM 85261371;89338606 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065380/ERR1065380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065380/ERR1065380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065380/17059_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065380/17059_8#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065380/ERR1065380_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065380/ERR1065380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065380/17059_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065380/17059_8#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 145144463;8209 ERS707876 ERX1145530 GENOMIC 14406229 617691500 2015-10-13 SC_RUN_17059_8#84 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065380/17059_8#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065380/17059_8#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#84 ERR1065148 SC_EXP_17059_6#37 444 85995999ed34d60afc7d3aeb0a7280a5;d83d46c35db5b5d3d5f059bb3f5677f0 1313 18797a12a2e40e00e3d2f28739393533;e57b0583c4dba26e9d8bd99d58fc38fc SAMEA3353233 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065148/ERR1065148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065148/ERR1065148_2.fastq.gz 5835424 WGS GPS_ZA_carriage_SP1177-sc-2277831 RANDOM 110293223;111200329 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065148/ERR1065148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065148/ERR1065148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065148/17059_6#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065148/17059_6#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065148/ERR1065148_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065148/ERR1065148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065148/17059_6#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065148/17059_6#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 184233401;9657 ERS707588 ERX1145298 GENOMIC 14397945 729428000 2015-10-13 SC_RUN_17059_6#37 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065148/17059_6#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065148/17059_6#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#37 ERR774327 SC_EXP_14913_7#43 228 e6603a0a0035f007eed23829ca54abf5;1879a5d2849ae9272dfd0b3e31f07498 1313 40db2beeb5906a7b49783c8906b150e2;5b7d7997cb52938793d394d333e83bb9 SAMEA2814253 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774327/ERR774327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774327/ERR774327_2.fastq.gz 4557210 WGS GPS_ZA_2465-sc-2022765 RANDOM 153178039;160101621 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774327/ERR774327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774327/ERR774327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774327/14913_7#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774327/14913_7#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774327/ERR774327_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774327/ERR774327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774327/14913_7#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774327/14913_7#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255272040;7208 ERS566621 ERX717206 GENOMIC 12357950 455721000 2015-03-03 SC_RUN_14913_7#43 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774327/14913_7#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774327/14913_7#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#43 ERR909305 SC_EXP_15841_5#76 223 afacd7d2b4c45f283be0dad202987842;72721ef00f9d45361d9f07518bdea184 1313 7008622bf9efa0a516008f644b2b635e;a7a648a7fe7dafd9aab0d64801c92368 SAMEA3206986 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909305/ERR909305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909305/ERR909305_2.fastq.gz 5572400 WGS GPS_ZA_carriage_SP331-sc-2191922 RANDOM 175980390;182019080 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909305/ERR909305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909305/ERR909305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909305/15841_5#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909305/15841_5#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909305/ERR909305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909305/ERR909305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909305/15841_5#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909305/15841_5#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289630633;8891 ERS638996 ERX988560 GENOMIC 13275968 557240000 2015-06-09 SC_RUN_15841_5#76 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909305/15841_5#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909305/15841_5#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#76 ERR774482 SC_EXP_14936_4#9 220 3cff47c3bfdfa53537d2ba7a8db21b95;6a476aaad6591d9b99e23808f8132711 1313 d3c749758c992c14d92a4db4f89d97f3;ca5a7f2e4da7e3ac66662b88481d8fa2 SAMEA2814314 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774482/ERR774482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774482/ERR774482_2.fastq.gz 4473068 WGS GPS_ZA_2526-sc-2138108 RANDOM 163876760;164131779 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774482/ERR774482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774482/ERR774482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774482/14936_4#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774482/14936_4#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774482/ERR774482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774482/ERR774482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774482/14936_4#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774482/14936_4#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273525986;7225 ERS566682 ERX717361 GENOMIC 12347919 447306800 2015-03-03 SC_RUN_14936_4#9 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774482/14936_4#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774482/14936_4#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#9 ERR774184 SC_EXP_14913_5#90 225 ef347aea153b9e6cbb15c25952bcec45;4720997659a02ea32c135189101544cd 1313 8d40e71f30e28260005f352ed90e4894;da39186b33a6098d7bec9a25a25be109 SAMEA2814490 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774184/ERR774184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774184/ERR774184_2.fastq.gz 5655232 WGS GPS_ZA_2702-sc-2138285 RANDOM 186476176;192745050 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774184/ERR774184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774184/ERR774184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774184/14913_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774184/14913_5#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774184/ERR774184_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774184/ERR774184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774184/14913_5#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774184/14913_5#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307407345;9186 ERS566858 ERX717063 GENOMIC 12403390 565523200 2015-03-03 SC_RUN_14913_5#90 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774184/14913_5#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774184/14913_5#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#90 ERR774018 SC_EXP_14913_4#16 230 96616d1506ab1e6b37a831ba061bc336;8ed031757165b062f5cd0c40b8f3bc59 1313 b686b57b1ff01d35f6a786d50318c678;03ffc771350d28abf1a885892507d4ea SAMEA2814024 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774018/ERR774018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774018/ERR774018_2.fastq.gz 5063480 WGS GPS_ZA_2343-sc-2022508 RANDOM 170097950;176632591 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774018/ERR774018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774018/ERR774018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774018/14913_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774018/14913_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774018/ERR774018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774018/ERR774018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774018/14913_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774018/14913_4#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283390395;8060 ERS566392 ERX716897 GENOMIC 12396066 506348000 2015-03-03 SC_RUN_14913_4#16 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774018/14913_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774018/14913_4#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#16 ERR730232 SC_EXP_14520_4#94 222 c21966448ccb6d7116f0c9c45894171e;3499791e491ae67ed6de1846f23e4cc9 1313 6b53e31a170173cbb1068f2714055dd0;b7e3325d9ef6cf89007f26cdb94bfbe8 SAMEA2696377 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730232/ERR730232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730232/ERR730232_2.fastq.gz 5895200 WGS GPS_GM_0612-sc-2021831 RANDOM 223150617;226819203 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730232/ERR730232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730232/ERR730232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730232/14520_4#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730232/14520_4#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730232/ERR730232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730232/ERR730232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730232/14520_4#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730232/14520_4#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 372795871;9559 ERS524956 ERX674178 GENOMIC 11982814 589520000 2015-01-14 SC_RUN_14520_4#94 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730232/14520_4#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730232/14520_4#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#94 ERR633076 SC_EXP_13415_8#54 232 308cff4f4d11fcfd4ea74b16246674ff;bfdf864f3cd4f5c61f71415b21eebd13 1313 49356cb596cae99eb6403a5f49c0d500;dd6ef5479ee9d18ab85de730c67160f1 SAMEA2554261 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633076/ERR633076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633076/ERR633076_2.fastq.gz 5111196 WGS GPS_ZA_1150-sc-1951299 RANDOM 170246758;175067876 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633076/ERR633076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633076/ERR633076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633076/13415_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633076/13415_8#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633076/ERR633076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633076/ERR633076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633076/13415_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633076/13415_8#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285493073;8430 ERS464762 ERX589630 GENOMIC 10663372 511119600 2014-09-23 SC_RUN_13415_8#54 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633076/13415_8#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633076/13415_8#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#54 ERR662351 SC_EXP_13710_1#35 186 a9ee384448587ad339ba0e1653c9de28;9a01b10551096acc1f49b74ce4dde724 1313 47229ba649b4aa29c3a2496119608fc8;8b27544ac7cb5cbf2e358ed8b755370a SAMEA2521817 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662351/ERR662351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662351/ERR662351_2.fastq.gz 5893396 WGS 2013208751-sc-1947111 RANDOM 186309113;194556940 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662351/ERR662351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662351/ERR662351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662351/13710_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662351/13710_1#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662351/ERR662351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662351/ERR662351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662351/13710_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662351/13710_1#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 321144319;9673 ERS455357 ERX618627 GENOMIC 11100370 589339600 2014-10-28 SC_RUN_13710_1#35 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662351/13710_1#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662351/13710_1#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#35 ERR600162 SC_EXP_13414_2#23 233 8f24dbcd1178712d7039fceccde8bd03;b998420db73100d6ce615b793c6b4c82 1313 bb3a53fce9c5f1cfca7072e0a1417ae9;fb379611bf1ab325bf47de055fd11a36 SAMEA2521574 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600162/ERR600162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600162/ERR600162_2.fastq.gz 5468972 WGS 2012214932-sc-1946866 RANDOM 183065129;187625014 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600162/ERR600162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600162/ERR600162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600162/13414_2#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600162/13414_2#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600162/ERR600162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600162/ERR600162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600162/13414_2#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600162/13414_2#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304106248;8924 ERS455114 ERX556991 GENOMIC 10600568 546897200 2014-09-16 SC_RUN_13414_2#23 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600162/13414_2#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600162/13414_2#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#23 ERR586375 SC_EXP_13154_2#82 246 5a225dd48bcccbd52d5d49d6ab5ecc52;a6a48caa74993f1716167e776b0c7c15 1313 af7b390943efe968049d7135d46516c7;047fc5faed9ec5a060f59243fbfbfcf1 SAMEA2467326 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586375/ERR586375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586375/ERR586375_2.fastq.gz 4913238 WGS PATH3032-sc-1926109 RANDOM 153917032;160458575 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586375/ERR586375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586375/ERR586375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586375/13154_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586375/13154_2#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586375/ERR586375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586375/ERR586375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586375/13154_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586375/13154_2#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258637975;8001 ERS437083 ERX544383 GENOMIC 10222426 491323800 2014-08-27 SC_RUN_13154_2#82 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586375/13154_2#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586375/13154_2#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_2#82 ERR600236 SC_EXP_13414_3#14 223 72b86856bab9db9c4e644f117ab12bc4;bd0ebefffc4340982a607047b52f25db 1313 53d7aa929b66aa082939f887104854f1;6da8b55e4d76185fcd95b6c327d088c0 SAMEA2521660 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600236/ERR600236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600236/ERR600236_2.fastq.gz 12925026 WGS 2012224338-sc-1946953 RANDOM 419874493;428954372 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600236/ERR600236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600236/ERR600236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600236/13414_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600236/13414_3#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600236/ERR600236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600236/ERR600236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600236/13414_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600236/13414_3#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 709565402;20538 ERS455200 ERX557065 GENOMIC 10600652 1292502600 2014-09-16 SC_RUN_13414_3#14 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600236/13414_3#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600236/13414_3#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#14 ERR568693 SC_EXP_12837_4#4 226 019c93651c993505ef9a9262b49cfec2;a6f5434bc74ee0d273af59292d0e31ea 1313 0c28fd1bc2ed4236f1fb8c3be9b889d6;a2ebdfe7cdd68de54a9d3155748c798c SAMEA2434680 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568693/ERR568693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568693/ERR568693_2.fastq.gz 5816658 WGS SA_GPS_SP575-sc-1895745 RANDOM 203928614;207211827 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568693/ERR568693_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568693/ERR568693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568693/12837_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568693/12837_4#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568693/ERR568693_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568693/ERR568693_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568693/12837_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568693/12837_4#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 341555198;9439 ERS428857 ERX527682 GENOMIC 9986229 581665800 2014-07-23 SC_RUN_12837_4#4 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568693/12837_4#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568693/12837_4#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#4 ERR505516 SC_EXP_12291_1#58 213 f20a8a91e0e8348a167182b4feda4fc8;6ee6f496fcb121097410f0ec2c2413bf 1313 9fc42313e21cf31952db103e60d37f05;bd0d0f8a9a4067a3796cad57bc2b6c80 SAMEA2335717 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505516/ERR505516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505516/ERR505516_2.fastq.gz 3510634 WGS PATH2554-sc-1810642 RANDOM 113407076;116590379 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505516/ERR505516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505516/ERR505516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505516/12291_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505516/12291_1#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505516/ERR505516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505516/ERR505516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505516/12291_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505516/12291_1#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 186658372;5653 ERS393911 ERX470873 GENOMIC 9441115 351063400 2014-05-19 SC_RUN_12291_1#58 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505516/12291_1#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505516/12291_1#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#58 ERR461108 SC_EXP_11860_6#10 233 7a1843efad34092d0de81f0800d8fd64;28425bdf4001128c68281b225753dab3 1313 1ae22c5eaad0e130e70c00ae72b95b01;52bd0e82e116255aeb0759ebc68914a4 SAMEA2238476 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461108/ERR461108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461108/ERR461108_2.fastq.gz 3918232 WGS 2080023-sc-2013-11-05T11:57:06Z-1749836 RANDOM 124766614;131653500 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461108/ERR461108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461108/ERR461108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461108/11860_6#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461108/11860_6#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461108/ERR461108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461108/ERR461108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461108/11860_6#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461108/11860_6#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 210805220;6454 ERS367288 ERX427449 GENOMIC 9015532 391823200 2014-03-18 SC_RUN_11860_6#10 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461108/11860_6#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461108/11860_6#10.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_6#10 ERR461398 SC_EXP_11861_1#21 225 aaf36ad4a19bddb268dd7b19c9ed3210;151831b9a6686cca0336d346f46c2d46 1313 4de6a785cfc9b3c67f57eac2236c9b12;9c0783550c894364ad8128c993c75f67 SAMEA2238584 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461398/ERR461398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461398/ERR461398_2.fastq.gz 3876294 WGS 2082187-sc-2013-11-05T11:58:59Z-1749945 RANDOM 123804994;129112301 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461398/ERR461398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461398/ERR461398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461398/11861_1#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461398/11861_1#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461398/ERR461398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461398/ERR461398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461398/11861_1#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461398/11861_1#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 207214860;6356 ERS367396 ERX427739 GENOMIC 9016158 387629400 2014-03-18 SC_RUN_11861_1#21 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461398/11861_1#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461398/11861_1#21.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#21 ERR433508 SC_EXP_11657_1#77 250 08e048f06bc0468903b2143d095df8bf;ec2ddc1f0608f64df01f0722c1f87def 1313 3e9f73d3a0fcb84445b388f7c5acfbcf;f329e72fbb93d8fc596b676cc616154b SAMEA1972624 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433508/ERR433508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433508/ERR433508_2.fastq.gz 4858086 WGS 1868_00-sc-2013-07-03T13:39:54Z-1659516 RANDOM 158656923;162465947 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433508/ERR433508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433508/ERR433508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433508/11657_1#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433508/11657_1#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433508/ERR433508_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433508/ERR433508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433508/11657_1#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433508/11657_1#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264004622;7977 ERS322684 ERX399783 GENOMIC 8735036 485808600 2014-02-18 SC_RUN_11657_1#77 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433508/11657_1#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433508/11657_1#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_1#77 ERR067794 SC_EXP_6972_3#3 229 c805fdec0205a539f5ae8fca78e7c612 1313 2ad1972984ed4a4166e148b6e1d3b552;fc637fa2ab39716602e020c0f0fbe61c SAMEA1028626 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067794/ERR067794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067794/ERR067794_2.fastq.gz 4841481 WGS SMRU2571-sc-2011-01-27-1062784 RANDOM 305499661;310675998 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067794/ERR067794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067794/ERR067794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067794/6972_3#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067794/ERR067794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067794/ERR067794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067794/6972_3#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 788292448 ERS022081 ERX045657 GENOMIC 3686244 726222150 2012-01-16 SC_RUN_6972_3#3 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067794/6972_3#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR054452 SC_EXP_6753_2#15 243 7854e22dd6fdbb001bb6a8bac5f75e7a 1313 b7071c46b4baa3bf413b23204755505a;98347575a84c47318027cbc696a11bf0 SAMEA1025130 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054452/ERR054452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054452/ERR054452_2.fastq.gz 3411797 WGS SMRU1504-sc-2011-01-27-1061717 RANDOM 183241575;188334368 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054452/ERR054452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054452/ERR054452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054452/6753_2#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054452/ERR054452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054452/ERR054452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054452/6753_2#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 468810181 ERS021014 ERX031498 GENOMIC 3414188 511769550 2011-11-15 SC_RUN_6753_2#15 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054452/6753_2#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR084243 SC_EXP_7038_7#17 246 bd6e2c6b61646e72ad06259c8b5bbd2a 1313 b54d7d0282a3c45afd6fad7e57fe6eff;1f1690c0d443ece29b2b303ba8a9d420 SAMEA1029218 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084243/ERR084243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084243/ERR084243_2.fastq.gz 4712346 WGS SMRU3017-sc-2011-01-27-1063230 RANDOM 313441847;327777156 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084243/ERR084243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084243/ERR084243_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084243/7038_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084243/ERR084243_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084243/ERR084243_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084243/7038_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1214406343 ERS022527 ERX062009 GENOMIC 3811770 706851900 2012-02-07 SC_RUN_7038_7#17 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084243/7038_7#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR316723 SC_EXP_9789_3#61 207 191889795118ce31c9bbf636de95bd83 1313 fda2db89a2c9dd81a56fb0136f776134;ddc37f3260c79ea383332bba3d9e2ae8 SAMEA2052138 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316723/ERR316723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316723/ERR316723_2.fastq.gz 3100963 WGS 748-sc-2013-02-18T14:44:13Z-1561853 RANDOM 191995725;210422212 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316723/ERR316723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316723/ERR316723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316723/9789_3#61.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316723/ERR316723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316723/ERR316723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316723/9789_3#61.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 546465127 ERS215069 ERX289871 GENOMIC 7066888 620192600 2013-07-22 SC_RUN_9789_3#61 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316723/9789_3#61.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_3#61 ERR046070 SC_EXP_6512_1#23 204 a41ef1cc673794beb2ddf0c3294a03d1 1313 223e82c8b91513640c4e22417a57eedd;e174672d23727e5a441739241f1cc55b SAMEA1026672 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046070/ERR046070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046070/ERR046070_2.fastq.gz 13428757 WGS UoS3079-sc-2011-02-14-1078299 RANDOM 751126746;763357574 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046070/ERR046070_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046070/ERR046070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046070/6512_1#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046070/ERR046070_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046070/ERR046070_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046070/6512_1#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1887762552 ERS023245 ERX023132 GENOMIC 2734224 2014313550 2011-09-20 SC_RUN_6512_1#23 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046070/6512_1#23.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_1#23 ERR2305592 SC_EXP_23495_7#36 395 a8223fa6ca03ca2447e01bc61a530fb7;4b9eb742eefbfaf52b218c72effe208a 1313 d463f5f2447faf4e6d7dd4d938e7c817;238f7f574b379f8063dcb1d722c58a4a SAMEA104034815 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305592/ERR2305592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305592/ERR2305592_2.fastq.gz 1736922 WGS f4715cf0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 48894212;54693335 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305592/ERR2305592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305592/ERR2305592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305592/23495_7#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305592/23495_7#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305592/ERR2305592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305592/ERR2305592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305592/23495_7#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305592/23495_7#36.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 74172568;3018 ERS1698708 ERX2356902 GENOMIC DN483688I:D5 262275222 2018-02-16 SC_RUN_23495_7#36 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305592/23495_7#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305592/23495_7#36.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808782 ERR2305532 SC_EXP_22984_8#70 342 7a18a28c740c7f2e71827bc711a20770;b82168911d9c5b4c089601d4b23eec5e 1313 8f35b0d099778a011722c166d187df47;408bc6f1703fc2a3c1eebdf6fc79ff48 SAMEA104035040 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305532/ERR2305532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305532/ERR2305532_2.fastq.gz 2243378 WGS 03c8f9b0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 62144156;81596567 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305532/ERR2305532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305532/ERR2305532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305532/22984_8#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305532/22984_8#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305532/ERR2305532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305532/ERR2305532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305532/22984_8#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305532/22984_8#70.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105858152;3813 ERS1698933 ERX2356842 GENOMIC DN483712O:F9 338750078 2018-02-16 SC_RUN_22984_8#70 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305532/22984_8#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305532/22984_8#70.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809009 ERR2305482 SC_EXP_22984_8#20 349 7dfe188a219880384fc3aaa1ed78bf19;b088016436151d924b633250ae52c262 1313 873f78e36cf89b93ed3f376462c2ab54;44a3d244754352fa14442858f379e11a SAMEA104034990 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305482/ERR2305482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305482/ERR2305482_2.fastq.gz 2190096 WGS 021a5f50-13c4-11e7-942b-3c4a9275d6c8 RANDOM 60458576;80278104 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305482/ERR2305482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305482/ERR2305482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305482/22984_8#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305482/22984_8#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305482/ERR2305482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305482/ERR2305482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305482/22984_8#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305482/22984_8#20.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104445482;3735 ERS1698883 ERX2356792 GENOMIC DN483712O:D3 330704496 2018-02-16 SC_RUN_22984_8#20 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305482/22984_8#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305482/22984_8#20.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808959 ERR2305390 SC_EXP_22709_8#303 456 a248254d1fa3dea76b59d45a4913ecc0;85af93696e80abf29e62a73ded1a41b8 1313 c94a85ae862d37e87c8344a77bb65258;581c13db2821173c557fbf9ca0fd0a36 SAMEA104034517 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305390/ERR2305390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305390/ERR2305390_2.fastq.gz 2317368 WGS de506290-13c3-11e7-942b-3c4a9275d6c8 RANDOM 56030388;83027892 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305390/ERR2305390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305390/ERR2305390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305390/22709_8#303.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305390/22709_8#303.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305390/ERR2305390_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305390/ERR2305390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305390/22709_8#303.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305390/22709_8#303.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 101324949;3950 ERS1698410 ERX2356700 GENOMIC DN477148T:G3 349922568 2018-02-16 SC_RUN_22709_8#303 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305390/22709_8#303.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305390/22709_8#303.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808481 ERR2305337 SC_EXP_22695_3#296 414 9130120722e777a22ae863e571f654bd;a0d0c735b9a231366cc57c2e5be5718b 1313 8070205a8b72e7125455b35eb6eda10a;f5fe3690fcf50ee85147211648ef5c3f SAMEA104035070 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305337/ERR2305337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305337/ERR2305337_2.fastq.gz 2647502 WGS 090c5390-13c4-11e7-942b-3c4a9275d6c8 RANDOM 74610809;97604899 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305337/ERR2305337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305337/ERR2305337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305337/22695_3#296.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305337/22695_3#296.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305337/ERR2305337_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305337/ERR2305337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305337/22695_3#296.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305337/22695_3#296.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 125805404;4392 ERS1698963 ERX2356647 GENOMIC DN477147S:C2 399772802 2018-02-16 SC_RUN_22695_3#296 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305337/22695_3#296.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305337/22695_3#296.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809045 ERR2305245 SC_EXP_22695_3#204 433 26121a274cab450e952340bc12920a96;0cc19630665405d37e8479a45ac95d43 1313 ee53b09de2ef4e3bbda62e4ad3612ba5;2fc5b77ceab547ba3f6c31b68946847b SAMEA104034888 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305245/ERR2305245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305245/ERR2305245_2.fastq.gz 2035106 WGS facfc3c0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 54757876;75313717 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305245/ERR2305245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305245/ERR2305245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305245/22695_3#204.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305245/22695_3#204.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305245/ERR2305245_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305245/ERR2305245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305245/22695_3#204.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305245/22695_3#204.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 93743717;3509 ERS1698781 ERX2356555 GENOMIC DN477146R:F2 307301006 2018-02-16 SC_RUN_22695_3#204 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305245/22695_3#204.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305245/22695_3#204.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808856 ERR2305378 SC_EXP_22709_8#291 449 9f1d872d70b5a82c19a13e486efebfe6;294ba102da6ac39f065ba3404e8d88ca 1313 9243b173f56ad810d6a4499dce7f85c9;f48dbe06e2403140d10534a341e66d01 SAMEA104034505 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305378/ERR2305378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305378/ERR2305378_2.fastq.gz 2281582 WGS ddec70a0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 56278736;82147751 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305378/ERR2305378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305378/ERR2305378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305378/22709_8#291.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305378/22709_8#291.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305378/ERR2305378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305378/ERR2305378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305378/22709_8#291.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305378/22709_8#291.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 101928670;3894 ERS1698398 ERX2356688 GENOMIC DN477148T:C2 344518882 2018-02-16 SC_RUN_22709_8#291 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305378/22709_8#291.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305378/22709_8#291.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808469 ERR2305228 SC_EXP_22695_3#187 426 2a4b24784dde264061869a6e6a69dfa2;d75c750fafb83aded257990a5140b499 1313 6495bcb76d004c77cbe1bc59565c5689;769b1b0278d106a3d75a959dbdb8d182 SAMEA104034776 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305228/ERR2305228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305228/ERR2305228_2.fastq.gz 2228824 WGS ef1041e0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 60122114;81398288 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305228/ERR2305228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305228/ERR2305228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305228/22695_3#187.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305228/22695_3#187.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305228/ERR2305228_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305228/ERR2305228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305228/22695_3#187.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305228/22695_3#187.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102604234;3784 ERS1698669 ERX2356538 GENOMIC DN477141M:D12 336552424 2018-02-16 SC_RUN_22695_3#187 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305228/22695_3#187.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305228/22695_3#187.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808742 ERR2305217 SC_EXP_22695_3#176 432 4edf19837453879a20060024b460e1c5;df114cc12fa256efdbc5ae9f43230c8b 1313 be792921f4e321e917d5602047ffcb55;5197f06e3d7f1507cce64335f8025594 SAMEA104034765 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305217/ERR2305217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305217/ERR2305217_2.fastq.gz 2155272 WGS eea71fd0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61014323;80088140 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305217/ERR2305217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305217/ERR2305217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305217/22695_3#176.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305217/22695_3#176.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305217/ERR2305217_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305217/ERR2305217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305217/22695_3#176.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305217/22695_3#176.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102215305;3640 ERS1698658 ERX2356527 GENOMIC DN477141M:A11 325446072 2018-02-16 SC_RUN_22695_3#176 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305217/22695_3#176.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305217/22695_3#176.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808731 ERR1065764 SC_EXP_17150_5#31 460 7ca4411a0c30a07e7b49334544a7735c;2f6283c97d345dbef2b4e9907ff8b11f 1313 2c7709577a5ab45af14410a9ac40169d;b77256947dab3520cecae3471c30ed5e SAMEA3353778 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065764/ERR1065764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065764/ERR1065764_2.fastq.gz 4502148 WGS GPS_ZA_carriage_SP1823-sc-2278382 RANDOM 88727278;83347779 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065764/ERR1065764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065764/ERR1065764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065764/17150_5#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065764/17150_5#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065764/ERR1065764_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065764/ERR1065764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065764/17150_5#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065764/17150_5#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 129296684;7399 ERS708133 ERX1145914 GENOMIC 14423271 562768500 2015-10-13 SC_RUN_17150_5#31 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065764/17150_5#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065764/17150_5#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#31 ERR1191999 SC_EXP_17794_7#177 458 f4a5efb5d39368ab0d52e9467d9e1f20;01d6401cca15470fccdc6ddc29acb2cd 1313 9dddd4f18396452f0ccf84f008736d9c;563697d384f0d0ab35fc4cbba6ff475b SAMEA3381543 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191999/ERR1191999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191999/ERR1191999_2.fastq.gz 2344560 WGS GPS_GM_2008-sc-2279421 RANDOM 47711739;52159793 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191999/ERR1191999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191999/ERR1191999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191999/17794_7#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191999/17794_7#177.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1191999/ERR1191999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1191999/ERR1191999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191999/17794_7#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191999/17794_7#177.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78316589;3978 ERS719802 ERX1265383 GENOMIC 14934862 293070000 2015-12-17 SC_RUN_17794_7#177 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191999/17794_7#177.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191999/17794_7#177.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#177 ERR2305099 SC_EXP_22695_3#58 432 ad7e1cd77c87c183d1cf1fd3369ebe65;cad6ba3c902e30022c7135beed693c33 1313 527b79fed4bc72304d28c90ea28cf1cf;f5397f2161c4f569078a1e6d818ba12b SAMEA104034647 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305099/ERR2305099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305099/ERR2305099_2.fastq.gz 2272206 WGS e6ac4710-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61279930;82860390 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305099/ERR2305099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305099/ERR2305099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305099/22695_3#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305099/22695_3#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305099/ERR2305099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305099/ERR2305099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305099/22695_3#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305099/22695_3#58.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105718384;3839 ERS1698540 ERX2356409 GENOMIC DN477140L:B8 343103106 2018-02-16 SC_RUN_22695_3#58 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305099/22695_3#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305099/22695_3#58.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808612 ERR913085 SC_EXP_15873_1#27 206 e419223348fbc104e77f93783e179cd8;01390c70dce72ad14fee0c3bf3d16cdb 1313 ac561e2c3fd516de8c27c15b953557d8;d4fbd8eccde474f4e73107fdcb6b363e SAMEA3207127 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913085/ERR913085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913085/ERR913085_2.fastq.gz 4609632 WGS GPS_ZA_carriage_SP503-sc-2192065 RANDOM 145486779;152203090 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913085/ERR913085_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913085/ERR913085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913085/15873_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913085/15873_1#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913085/ERR913085_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913085/ERR913085_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913085/15873_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913085/15873_1#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241293295;7321 ERS639137 ERX992209 GENOMIC 13227561 460963200 2015-06-17 SC_RUN_15873_1#27 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913085/15873_1#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913085/15873_1#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#27 ERR908915 SC_EXP_15841_1#66 206 3e21feadf5334b52c5fad2f0dc22e216;ebe1987df2b523830c69d924a8a667bf 1313 a8ffbc2d7bea83f8c61a8cbc1778473f;77d76fb509dae75813f17b3575f0ec21 SAMEA3206847 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908915/ERR908915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908915/ERR908915_2.fastq.gz 4583586 WGS GPS_ZA_carriage_SP211-sc-2191781 RANDOM 143907106;149033086 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908915/ERR908915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908915/ERR908915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908915/15841_1#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908915/15841_1#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908915/ERR908915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908915/ERR908915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908915/15841_1#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908915/15841_1#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 236649826;7365 ERS638857 ERX988170 GENOMIC 13227457 458358600 2015-06-09 SC_RUN_15841_1#66 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908915/15841_1#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908915/15841_1#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#66 ERR909233 SC_EXP_15841_5#4 223 8ff803615beee169cf893a97e019d34a;09d235196dbcf29b05055dfe6b8bb2ac 1313 cb3da9954b6f08b8cd182ab865be3aad;869d7d094588d0d58556a262999a61aa SAMEA3206914 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909233/ERR909233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909233/ERR909233_2.fastq.gz 5404404 WGS GPS_ZA_carriage_SP322-sc-2191850 RANDOM 171032252;177309751 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909233/ERR909233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909233/ERR909233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909233/15841_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909233/15841_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909233/ERR909233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909233/ERR909233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909233/15841_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909233/15841_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281618912;8644 ERS638924 ERX988488 GENOMIC 13275959 540440400 2015-06-09 SC_RUN_15841_5#4 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909233/15841_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909233/15841_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#4 ERR876686 SC_EXP_15608_4#68 214 18d16c527fb012d1b5e4a946bb9b6164;fd2c92df2e52cbdb14e9ba0c00a1483e 1313 9e4b2a0eb6e7c9e1a018dd961f43966c;b96cfb32fe4feaeccefc134c54c97d64 SAMEA3175914 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876686/ERR876686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876686/ERR876686_2.fastq.gz 5709648 WGS GPS_US_PATH6527-sc-2190956 RANDOM 177995877;184636958 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876686/ERR876686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876686/ERR876686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876686/15608_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876686/15608_4#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876686/ERR876686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876686/ERR876686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876686/15608_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876686/15608_4#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293748484;9297 ERS628862 ERX956249 GENOMIC 13029960 570964800 2015-05-12 SC_RUN_15608_4#68 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876686/15608_4#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876686/15608_4#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_4#68 ERR900668 SC_EXP_15731_8#23 230 648229993c74791b9a5386f49f99d8a6;b461f722dfd62bff3d7b4e8eb728ccbb 1313 cc88d1ef8c9d0ffebc4d5af77173c7c3;c9800d46b5f16ab4a32d9fa41f695def SAMEA3206648 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900668/ERR900668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900668/ERR900668_2.fastq.gz 5265878 WGS GPS_ZA_carriage_SP75-sc-2191581 RANDOM 161168397;168457245 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900668/ERR900668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900668/ERR900668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900668/15731_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900668/15731_8#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900668/ERR900668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900668/ERR900668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900668/15731_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900668/15731_8#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265844548;8419 ERS638658 ERX980057 GENOMIC 13208948 526587800 2015-05-26 SC_RUN_15731_8#23 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900668/15731_8#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900668/15731_8#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#23 ERR862439 SC_EXP_15378_3#86 191 565e84a5b2cc53e0e2e5276bc35c6f58;b02885e84be16f4a1cbce6ed0007c3c8 1313 8a318fb39034e6bb62a6ba39ebb0892a;3bd7756ffeacb5f293cfaa1709d589f1 SAMEA3171123 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862439/ERR862439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862439/ERR862439_2.fastq.gz 8541562 WGS GPS_MW_4159-sc-2139686 RANDOM 294173819;302960397 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862439/ERR862439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862439/ERR862439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862439/15378_3#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862439/15378_3#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862439/ERR862439_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862439/ERR862439_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862439/15378_3#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862439/15378_3#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 495825638;13669 ERS625514 ERX942089 GENOMIC 12815456 854156200 2015-04-21 SC_RUN_15378_3#86 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862439/15378_3#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862439/15378_3#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#86 ERR774296 SC_EXP_14913_7#12 228 af41a02039309b6fc9f95f68bb9f56da;f2114d66d8ba76a00e133a936065513c 1313 5ccd92acae5fa047e6c5cdb9613b31ef;c341710f36a8c8bf58bdb43e210b0f50 SAMEA2814222 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774296/ERR774296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774296/ERR774296_2.fastq.gz 4374956 WGS GPS_ZA_2434-sc-2022709 RANDOM 146246997;153590795 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774296/ERR774296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774296/ERR774296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774296/14913_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774296/14913_7#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774296/ERR774296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774296/ERR774296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774296/14913_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774296/14913_7#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244842452;7013 ERS566590 ERX717175 GENOMIC 12357958 437495600 2015-03-03 SC_RUN_14913_7#12 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774296/14913_7#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774296/14913_7#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#12 ERR774541 SC_EXP_14936_4#68 220 8c68e4e1f28569084482209ba7e5661f;0c8201c9ca77e7be799a4b5af9af32e7 1313 b11bb3783464c79782efd385b2001899;9c8b96d1fe14f8442ad97479e7eb75d6 SAMEA2814373 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774541/ERR774541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774541/ERR774541_2.fastq.gz 4742382 WGS GPS_ZA_2585-sc-2138167 RANDOM 174909574;176636772 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774541/ERR774541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774541/ERR774541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774541/14936_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774541/14936_4#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774541/ERR774541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774541/ERR774541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774541/14936_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774541/14936_4#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293350858;7624 ERS566741 ERX717420 GENOMIC 12347962 474238200 2015-03-03 SC_RUN_14936_4#68 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774541/14936_4#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774541/14936_4#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#68 ERR774357 SC_EXP_14913_7#73 228 4f1899a6dadf6e684529690175cce617;691c0c69a0f3675a5d4e98597cdb90ff 1313 fa6e034fa774956a36ecb749f808c053;844208e954659e96378b4eb53e3a9394 SAMEA2814283 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774357/ERR774357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774357/ERR774357_2.fastq.gz 4698424 WGS GPS_ZA_2495-sc-2022819 RANDOM 158730592;165613457 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774357/ERR774357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774357/ERR774357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774357/14913_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774357/14913_7#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774357/ERR774357_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774357/ERR774357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774357/14913_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774357/14913_7#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265341434;7464 ERS566651 ERX717236 GENOMIC 12357930 469842400 2015-03-03 SC_RUN_14913_7#73 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774357/14913_7#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774357/14913_7#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#73 ERR714374 SC_EXP_14410_7#17 220 f42a88b03c90e88bdcdc623106ffb01e;8dc3530c09aa501581949616bf7d6f73 1313 7a6d94263ea7bfe6af787576d39b35b5;f37ae8c429ed39fc14f91e8bf1a28b20 SAMEA2627328 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714374/ERR714374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714374/ERR714374_2.fastq.gz 5500478 WGS GPS_GM_0450-sc-2003266 RANDOM 190493728;190500909 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714374/ERR714374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714374/ERR714374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714374/14410_7#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714374/14410_7#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714374/ERR714374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714374/ERR714374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714374/14410_7#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714374/14410_7#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313431772;9112 ERS497227 ERX658296 GENOMIC 11883151 550047800 2015-01-08 SC_RUN_14410_7#17 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714374/14410_7#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714374/14410_7#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#17 ERR570427 SC_EXP_12837_5#26 238 4919adb7c4d9c578ee86f5c46e1feaeb;7123c6c947681057209725c98ab51819 1313 81ad629966a0e4a83ba6ed461ca86257;42e4cd6928bae9f0023d9a6a9e8ae84c SAMEA2434790 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570427/ERR570427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570427/ERR570427_2.fastq.gz 5740036 WGS SA_GPS_SP685-sc-1895856 RANDOM 192250574;196351985 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570427/ERR570427_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570427/ERR570427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570427/12837_5#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570427/12837_5#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570427/ERR570427_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570427/ERR570427_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570427/12837_5#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570427/12837_5#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320465351;9383 ERS428967 ERX529416 GENOMIC 9993229 574003600 2014-07-28 SC_RUN_12837_5#26 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570427/12837_5#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570427/12837_5#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#26 ERR714445 SC_EXP_14410_8#3 224 f6adea66171aba83c01b723655422fa5;f02a08bdeb83c4aad413c2c7d0ff4596 1313 dbf84c4d047a69bc08db77f651f71c20;19c2b507a95c89e09c168b690a48fd19 SAMEA2658311 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714445/ERR714445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714445/ERR714445_2.fastq.gz 5202098 WGS GPS_ZA_1475-sc-2020916 RANDOM 180766816;182510127 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714445/ERR714445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714445/ERR714445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714445/14410_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714445/14410_8#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714445/ERR714445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714445/ERR714445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714445/14410_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714445/14410_8#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 299761299;8627 ERS508339 ERX658367 GENOMIC 11883076 520209800 2015-01-08 SC_RUN_14410_8#3 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714445/14410_8#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714445/14410_8#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_8#3 ERR662430 SC_EXP_13710_2#42 196 c8fbde242d4f89c73ecc6d505ba97221;3c764dc5c117a8960357741ee43d81a9 1313 43915fddd0f382aa99374bae86f6d6b5;548df4ae2f955f4cf8561f836f4bbd4d SAMEA2521715 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662430/ERR662430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662430/ERR662430_2.fastq.gz 5136994 WGS 2012214420-sc-1947008 RANDOM 170442063;178304649 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662430/ERR662430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662430/ERR662430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662430/13710_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662430/13710_2#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662430/ERR662430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662430/ERR662430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662430/13710_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662430/13710_2#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289461222;8406 ERS455255 ERX618706 GENOMIC 11100456 513699400 2014-10-28 SC_RUN_13710_2#42 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662430/13710_2#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662430/13710_2#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#42 ERR633033 SC_EXP_13415_8#10 232 c67524140d8d624ee47da590e8db9fcb;0cabd9b205b4630d3967840b84bbff0e 1313 47916b40ae2e1c77f1e5a840633faccd;ac6eded94dd014da4d89784c907d53f6 SAMEA2554217 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633033/ERR633033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633033/ERR633033_2.fastq.gz 4268414 WGS GPS_ZA_1106-sc-1951255 RANDOM 142797576;146920368 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633033/ERR633033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633033/ERR633033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633033/13415_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633033/13415_8#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633033/ERR633033_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633033/ERR633033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633033/13415_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633033/13415_8#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 237512750;7011 ERS464718 ERX589587 GENOMIC 10663319 426841400 2014-09-23 SC_RUN_13415_8#10 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633033/13415_8#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633033/13415_8#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#10 ERR563848 SC_EXP_12754_2#94 209 579ec35e6c622a106f265dbdd66c3f0a;e6f7ac42c474dcd3b7f3c73134288b9d 1313 9be5cc6bc26c12247e0848b08c4ad967;2fde958578981429af006eb83664c149 SAMEA2383114 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563848/ERR563848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563848/ERR563848_2.fastq.gz 4914336 WGS 2100533_II-sc-1870364 RANDOM 165208562;169943046 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563848/ERR563848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563848/ERR563848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563848/12754_2#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563848/12754_2#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563848/ERR563848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563848/ERR563848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563848/12754_2#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563848/12754_2#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 277446204;8140 ERS409439 ERX522873 GENOMIC 9918638 491433600 2014-07-16 SC_RUN_12754_2#94 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563848/12754_2#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563848/12754_2#94.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#94 ERR563669 SC_EXP_12754_1#10 223 0927f97127c5a9e44960656be9da5763;0d18d69058cc146e68943d4fbaccbb81 1313 b358a15a668f423ac65be1280a83fe89;b27d738e2098cee8e65ebf629c09a659 SAMEA2382935 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563669/ERR563669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563669/ERR563669_2.fastq.gz 4919652 WGS 2080023_II-sc-1870184 RANDOM 162128044;167657947 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563669/ERR563669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563669/ERR563669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563669/12754_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563669/12754_1#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563669/ERR563669_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563669/ERR563669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563669/12754_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563669/12754_1#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271765723;8159 ERS409260 ERX522694 GENOMIC 9918483 491965200 2014-07-16 SC_RUN_12754_1#10 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563669/12754_1#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563669/12754_1#10.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#10 ERR554874 SC_EXP_12673_6#43 221 22c9d3fee26bf75e129998bd388951ad;9f237f30d70ba867db2deb6a4052155e 1313 d9fa3df917d809767f90a23eafcb7476;82268265bac00969c47ce13ddc95ea2c SAMEA2382588 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554874/ERR554874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554874/ERR554874_2.fastq.gz 4757528 WGS 2120296-sc-1869833 RANDOM 157352959;178136618 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554874/ERR554874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554874/ERR554874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554874/12673_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554874/12673_6#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554874/ERR554874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554874/ERR554874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554874/12673_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554874/12673_6#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 277881694;7813 ERS408913 ERX513943 GENOMIC 9798926 475752800 2014-07-02 SC_RUN_12673_6#43 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554874/12673_6#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554874/12673_6#43.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#43 ERR554842 SC_EXP_12673_6#11 221 cdc9d32641cabdbdc8bf445540ebc3c3;10d750814623fdb372a942cf60a792cb 1313 fa45f41ed24163fd08dd19c4bae189cc;3a4e19c4727ef1e212b546575b857079 SAMEA2382556 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554842/ERR554842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554842/ERR554842_2.fastq.gz 4544386 WGS 2110185-sc-1869801 RANDOM 148898109;168076156 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554842/ERR554842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554842/ERR554842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554842/12673_6#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554842/12673_6#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554842/ERR554842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554842/ERR554842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554842/12673_6#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554842/12673_6#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 264075168;7489 ERS408881 ERX513911 GENOMIC 9798922 454438600 2014-07-02 SC_RUN_12673_6#11 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554842/12673_6#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554842/12673_6#11.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#11 ERR352045 SC_EXP_10395_5#55 269 bad77fc4870f2aa3ddb0b689f158959b;948660f184392ae26a4f6a64849babe2 1313 00b396debab2c61f6f8399934f6812fb;38b805e35ac5ca0dc5a3e52e5fed6b17 SAMEA2066835 2013-10-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352045/ERR352045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352045/ERR352045_2.fastq.gz 4468522 WGS PI0261-sc-2013-05-02T11:27:06Z-1620082 RANDOM 152600432;160988958 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352045/ERR352045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352045/ERR352045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352045/10395_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352045/10395_5#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352045/ERR352045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352045/ERR352045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352045/10395_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352045/10395_5#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255447906;7190 ERS242939 ERX324828 GENOMIC 7705369 446852200 2013-10-14 SC_RUN_10395_5#55 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352045/10395_5#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352045/10395_5#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA257935 10395_5#55 ERR505731 SC_EXP_12291_4#14 230 5ae65a16dc5e71b0a571c7e38b0565a2;c7774d39b3a314d916345b02c5e4f87e 1313 ed1fd6cd32f1c0c493940f9ba2d57cb9;1e8bfc2228cc19dba7e096e713a22f33 SAMEA2335946 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505731/ERR505731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505731/ERR505731_2.fastq.gz 5271126 WGS 2010206726-sc-1810874 RANDOM 166947113;174932508 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505731/ERR505731_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505731/ERR505731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505731/12291_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505731/12291_4#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505731/ERR505731_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505731/ERR505731_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505731/12291_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505731/12291_4#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281035458;8761 ERS394140 ERX471088 GENOMIC 9444703 527112600 2014-05-19 SC_RUN_12291_4#14 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505731/12291_4#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505731/12291_4#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#14 ERR505876 SC_EXP_12291_5#74 230 26c7d51bd06ee2dc3817c4f4b4a64ba4;6ba62001d1537c43da9c390e088cc120 1313 cb7f46b2655e64ebe721889c17880c0c;de2c6c9fbf5e98a4dd22ded6e4621d75 SAMEA2336096 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505876/ERR505876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505876/ERR505876_2.fastq.gz 4282670 WGS 2009214102-sc-1811026 RANDOM 131415990;137771529 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505876/ERR505876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505876/ERR505876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505876/12291_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505876/12291_5#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505876/ERR505876_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505876/ERR505876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505876/12291_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505876/12291_5#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 220810509;7026 ERS394290 ERX471233 GENOMIC 9446397 428267000 2014-05-19 SC_RUN_12291_5#74 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505876/12291_5#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505876/12291_5#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#74 ERR461629 SC_EXP_11861_3#78 226 2ce00d849043613f83b6e3de5f8a371c;bee3626da729bd8bc6b5d854875b0e17 1313 5d7a89942cdb3e8eb1156a9862ff14ad;c9f38e99f271abd5e2839fc211d0b561 SAMEA2238930 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461629/ERR461629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461629/ERR461629_2.fastq.gz 3893744 WGS 2111286-sc-2013-11-05T12:05:05Z-1750294 RANDOM 129961971;136733912 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461629/ERR461629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461629/ERR461629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461629/11861_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461629/11861_3#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461629/ERR461629_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461629/ERR461629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461629/11861_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461629/11861_3#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 218740377;6333 ERS367742 ERX427970 GENOMIC 9016275 389374400 2014-03-18 SC_RUN_11861_3#78 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461629/11861_3#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461629/11861_3#78.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR505870 SC_EXP_12291_5#68 230 b1389b4d556cb2f532d5b46344abb20e;f5c1db5e987ffeb041c5efa77ec88e7f 1313 c90ffc572cd77cdfe4a172469e5f595d;b95e9cb8795b7e50689e6ba63934e242 SAMEA2336090 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505870/ERR505870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505870/ERR505870_2.fastq.gz 4157626 WGS 2009211096-sc-1811020 RANDOM 128002244;133516773 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505870/ERR505870_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505870/ERR505870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505870/12291_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505870/12291_5#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505870/ERR505870_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505870/ERR505870_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505870/12291_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505870/12291_5#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 213877788;6815 ERS394284 ERX471227 GENOMIC 9446420 415762600 2014-05-19 SC_RUN_12291_5#68 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505870/12291_5#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505870/12291_5#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#68 ERR461621 SC_EXP_11861_3#70 226 b2991803c304e7f1f4c1f8d9abf8af73;8bff4670eb971a9be78092eaee5b0c71 1313 0a61985ef8dc8a4fff82537d54ade106;a1521ad2c5836b52f12699df73efbfeb SAMEA2238922 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461621/ERR461621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461621/ERR461621_2.fastq.gz 4243182 WGS 2111178-sc-2013-11-05T12:04:57Z-1750286 RANDOM 138377779;144283764 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461621/ERR461621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461621/ERR461621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461621/11861_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461621/11861_3#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461621/ERR461621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461621/ERR461621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461621/11861_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461621/11861_3#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 231959992;6980 ERS367734 ERX427962 GENOMIC 9016274 424318200 2014-03-18 SC_RUN_11861_3#70 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461621/11861_3#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461621/11861_3#70.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461891 SC_EXP_11893_1#67 234 53bcafc679e0edf86ede0f0155124851;acba417c90345066c4fdbc75643c1c30 1313 11bfac8cc615c8dfb66a63f9ee5cd119;10e75b99b2f91d69125fed7e9ff80677 SAMEA2238826 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461891/ERR461891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461891/ERR461891_2.fastq.gz 4296128 WGS 2103493-sc-2013-11-05T12:03:04Z-1750189 RANDOM 146226437;150601149 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461891/ERR461891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461891/ERR461891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461891/11893_1#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461891/11893_1#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461891/ERR461891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461891/ERR461891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461891/11893_1#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461891/11893_1#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 243538831;7032 ERS367638 ERX428232 GENOMIC 9028156 429612800 2014-03-18 SC_RUN_11893_1#67 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461891/11893_1#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461891/11893_1#67.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461200 SC_EXP_11860_7#9 206 eedd1adfd0bf14af3e4127c4f1ff0310;a7dc2c64133b760afd4daf5039a5a195 1313 a83dcdcf4bd1b8d9982701cb1bf1d712;a0b9e86f3ca1630eecc218f0e11e78c4 SAMEA2239050 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461200/ERR461200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461200/ERR461200_2.fastq.gz 3858910 WGS 990749-sc-2013-11-05T12:07:05Z-1750419 RANDOM 123933126;129983723 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461200/ERR461200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461200/ERR461200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461200/11860_7#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461200/11860_7#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461200/ERR461200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461200/ERR461200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461200/11860_7#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461200/11860_7#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 208107571;6413 ERS367862 ERX427541 GENOMIC 9014877 385891000 2014-03-18 SC_RUN_11860_7#9 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461200/11860_7#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461200/11860_7#9.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461008 SC_EXP_11860_5#2 210 1b5c7a07e19658f914604d237fdd81cd;c5a1949f9a37460f6bc6763027bee722 1313 da94a9758c73fc79a2850ffe95a424b3;e0e7f3cb30d65d36b99d58994e46f21b SAMEA2238372 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461008/ERR461008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461008/ERR461008_2.fastq.gz 2059634 WGS 2070363-sc-2013-11-05T11:55:21Z-1749731 RANDOM 55714581;59174487 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461008/ERR461008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461008/ERR461008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461008/11860_5#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461008/11860_5#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461008/ERR461008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461008/ERR461008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461008/11860_5#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461008/11860_5#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 91103979;3446 ERS367184 ERX427349 GENOMIC 9014495 205963400 2014-03-18 SC_RUN_11860_5#2 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461008/11860_5#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461008/11860_5#2.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461548 SC_EXP_11861_2#83 216 e73cfb5ddcd51d5659a478e1aa463961;b6ec9dd72060fda7146ea2d27f3a38df 1313 854c6c3f8b5f364b5844dd57192ef80b;6234056a2163a2c99f67b62ca5697e0f SAMEA2238744 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461548/ERR461548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461548/ERR461548_2.fastq.gz 3719016 WGS 2100134-sc-2013-11-05T12:01:43Z-1750106 RANDOM 118699128;124643796 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461548/ERR461548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461548/ERR461548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461548/11861_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461548/11861_2#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461548/ERR461548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461548/ERR461548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461548/11861_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461548/11861_2#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 197986098;6126 ERS367556 ERX427889 GENOMIC 9020888 371901600 2014-03-18 SC_RUN_11861_2#83 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461548/11861_2#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461548/11861_2#83.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR450619 SC_EXP_11822_8#48 250 64ce8b1f6aa8f86fc2f79582fa71790e;8abd7dc9cc309a1c03aa275afa4af8dc 1313 d092cd6b32cf5fdcbd31e19384091d18;fc63ebcd2c69b8af17b0b93acdd7a907 SAMEA2238772 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR450/ERR450619/ERR450619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR450/ERR450619/ERR450619_2.fastq.gz 5827450 WGS 2100507-sc-2013-11-05T12:02:11Z-1750135 RANDOM 192089153;200243653 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR450/ERR450619/ERR450619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR450/ERR450619/ERR450619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR450/ERR450619/11822_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR450/ERR450619/11822_8#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR450/ERR450619/ERR450619_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR450/ERR450619/ERR450619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR450/ERR450619/11822_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR450/ERR450619/11822_8#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 324584447;9596 ERS367584 ERX416991 GENOMIC 8967073 582745000 2014-03-04 SC_RUN_11822_8#48 fasp.sra.ebi.ac.uk:/vol1/run/ERR450/ERR450619/11822_8#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR450/ERR450619/11822_8#48.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA291810 11822_8#48 ERR461279 SC_EXP_11860_7#90 206 053ed94d3c3decc1d9e2604bf4accd03;122b71be399b4720a62d347a870d6f60 1313 59e17ff99bf278187e14dc6162811714;aad12fceb5cc9dd74a7483d22e640054 SAMEA2239129 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461279/ERR461279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461279/ERR461279_2.fastq.gz 5358204 WGS 2000391-sc-2013-11-05T12:08:24Z-1750500 RANDOM 171265157;179799019 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461279/ERR461279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461279/ERR461279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461279/11860_7#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461279/11860_7#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461279/ERR461279_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461279/ERR461279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461279/11860_7#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461279/11860_7#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 287446233;8892 ERS367941 ERX427620 GENOMIC 9014899 535820400 2014-03-18 SC_RUN_11860_7#90 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461279/11860_7#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461279/11860_7#90.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#90 ERR124218 SC_EXP_7553_4#2 206 233e9204e9d17e7efff86ff147852534 1313 703c7cb90c4d6e74a3d4cf265a156dfe;b55c3e79da1b3436c9bc35ee85a5d522 SAMEA1463264 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124218/ERR124218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124218/ERR124218_2.fastq.gz 7565434 WGS ND6111-sc-2011-11-08T10:08:44Z-1298477 RANDOM 800478757;799540705 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124218/ERR124218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124218/ERR124218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124218/7553_4#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124218/ERR124218_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124218/ERR124218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124218/7553_4#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1540218594 ERS070109 ERX100400 GENOMIC 4382926 1513086800 2012-05-09 SC_RUN_7553_4#2 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124218/7553_4#2.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR124252 SC_EXP_7553_4#36 206 badc517c5a1e4c30da3d9d7a9d8a15ab 1313 37288a28e04cf755ab4163f981e903df;82f86457776b1af41ea716e63eb9d8fd SAMEA1463226 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124252/ERR124252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124252/ERR124252_2.fastq.gz 7580072 WGS NP7026-sc-2011-11-08T10:09:07Z-1298511 RANDOM 804345498;805916821 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124252/ERR124252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124252/ERR124252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124252/7553_4#36.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124252/ERR124252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124252/ERR124252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124252/7553_4#36.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1533929295 ERS070143 ERX100434 GENOMIC 4382960 1516014400 2012-05-09 SC_RUN_7553_4#36 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124252/7553_4#36.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR124306 SC_EXP_7553_5#90 207 3cbd6fca8931be6009b52cd8e93f7585 1313 09759bad805e12684efb12dc2e11cea7;7eba58205cd8418e3aabbbe27a4ca00e SAMEA1463028 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124306/ERR124306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124306/ERR124306_2.fastq.gz 7179028 WGS PT8082-sc-2011-11-08T10:09:49Z-1298565 RANDOM 754095874;786898877 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124306/ERR124306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124306/ERR124306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124306/7553_5#90.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124306/ERR124306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124306/ERR124306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124306/7553_5#90.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1497526381 ERS070197 ERX100488 GENOMIC 4383209 1435805600 2012-05-09 SC_RUN_7553_5#90 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124306/7553_5#90.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR124258 SC_EXP_7553_4#42 206 c08bc36f20a144cf9ed0cd2ae853e12b 1313 bf6d80c04ee858e4bdc6784d44f6e4dc;1572cd64d5e5ed00dd4ca9f081c477ed SAMEA1463274 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124258/ERR124258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124258/ERR124258_2.fastq.gz 4445631 WGS NP7057-sc-2011-11-08T10:09:12Z-1298517 RANDOM 472404443;473792940 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124258/ERR124258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124258/ERR124258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124258/7553_4#42.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124258/ERR124258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124258/ERR124258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124258/7553_4#42.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 917967952 ERS070149 ERX100440 GENOMIC 4382966 889126200 2012-05-09 SC_RUN_7553_4#42 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124258/7553_4#42.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR433984 SC_EXP_11679_1#20 216 99d13479158298b8a19ae70c2202d344;89c0e687ccc3f6d6dfa145618fcdb031 1313 7152cebb9c01e49f605e9e483eacc192;e45cce30e4bedf2efc35da729f013720 SAMEA2203824 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433984/ERR433984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433984/ERR433984_2.fastq.gz 3536624 WGS 2010216155-sc-2013-10-09T11:50:05Z-1712413 RANDOM 112223962;117984844 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433984/ERR433984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433984/ERR433984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433984/11679_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433984/11679_1#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433984/ERR433984_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433984/ERR433984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433984/11679_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433984/11679_1#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 187886503;5857 ERS356328 ERX400259 GENOMIC 8801445 353662400 2014-02-18 SC_RUN_11679_1#20 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433984/11679_1#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433984/11679_1#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#20 ERR2091241 SC_EXP_22841_4#132 432 afe75ab6795d925abb0fcb8e44401271;de0488983692c5c55f9c5844491dfb7e 1313 2f9b9c33a353dd04e29347a4396c3796;9f157d778bd234dcc3dce5d9f32a3c9f SAMEA104035438 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091241/ERR2091241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091241/ERR2091241_2.fastq.gz 2520848 WGS a0a395d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51084461;55166064 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091241/ERR2091241_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091241/ERR2091241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091241/22841_4#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091241/22841_4#132.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091241/ERR2091241_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091241/ERR2091241_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091241/22841_4#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091241/22841_4#132.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74304711;4217 ERS1699331 ERX2148035 GENOMIC DN477153Q:E5 315106000 2017-08-08 SC_RUN_22841_4#132 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091241/22841_4#132.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091241/22841_4#132.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#132 ERR084178 SC_EXP_7038_4#24 250 2d35b0cd0760237018cf57f738d04760 1313 baa1b550fe04c1b8ace9150d4e34954b;e3849d3ec62488e1f1ecb794d17a9cb5 SAMEA1029367 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084178/ERR084178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084178/ERR084178_2.fastq.gz 5418885 WGS SMRU2952-sc-2011-01-27-1063165 RANDOM 346254677;349483597 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084178/ERR084178_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084178/ERR084178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084178/7038_4#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084178/ERR084178_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084178/ERR084178_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084178/7038_4#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1338709459 ERS022462 ERX061944 GENOMIC 3808798 812832750 2012-02-07 SC_RUN_7038_4#24 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084178/7038_4#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR072231 SC_EXP_7054_6#10 234 df86ce41f7dfab1b06b8991a4e900625 1313 71f19295b6d9e1e27cc5bfaa48dafb31;503e64db7cfb52ae4fc93be9ab605a35 SAMEA1029394 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072231/ERR072231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072231/ERR072231_2.fastq.gz 2700796 WGS SMRU3082-sc-2011-01-27-1063295 RANDOM 157562818;163643185 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072231/ERR072231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072231/ERR072231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072231/7054_6#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072231/ERR072231_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072231/ERR072231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072231/7054_6#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 421180576 ERS022592 ERX049997 GENOMIC 3888073 405119400 2012-01-31 SC_RUN_7054_6#10 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072231/7054_6#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR2091260 SC_EXP_22841_4#151 415 b1a6f4f2f502e0a04e2f6b990df28eca;ffe1887e50ad63576fd7213172677b3e 1313 6b3a41241bfd12f1171a14cd3576c0a0;353783f6c9a87e32f15fb27d8e946791 SAMEA104035457 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091260/ERR2091260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091260/ERR2091260_2.fastq.gz 2674150 WGS a15cd3b0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 53157415;57468085 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091260/ERR2091260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091260/ERR2091260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091260/22841_4#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091260/22841_4#151.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091260/ERR2091260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091260/ERR2091260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091260/22841_4#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091260/22841_4#151.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77561933;4455 ERS1699350 ERX2148054 GENOMIC DN477153Q:H7 334268750 2017-08-08 SC_RUN_22841_4#151 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091260/22841_4#151.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091260/22841_4#151.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#151 ERR316651 SC_EXP_9789_2#80 213 b3da192ea8b972cadd3e6e0cb9470d33 1313 be472c568b4b965476c9744fa28a7643;e66f0f962a54dbf0385e32521ba3bdd4 SAMEA2051752 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316651/ERR316651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316651/ERR316651_2.fastq.gz 2489990 WGS A59564-sc-2013-02-18T14:42:54Z-1561778 RANDOM 158719250;175075657 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316651/ERR316651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316651/ERR316651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316651/9789_2#80.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316651/ERR316651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316651/ERR316651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316651/9789_2#80.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 463574979 ERS214995 ERX289799 GENOMIC 7066829 497998000 2013-07-22 SC_RUN_9789_2#80 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316651/9789_2#80.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#80 ERR2091060 SC_EXP_22841_3#139 408 d36fc5deec4912718e8c15bc7bb823f5;dd8b71916089cf0437a149948c5cf1fc 1313 b946f15ab31a94fb7dd3a8791f6f54ad;c9b90272c9a5388e3ac2f68349854281 SAMEA104035919 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091060/ERR2091060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091060/ERR2091060_2.fastq.gz 2511702 WGS ca12e290-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 53209077;57309216 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091060/ERR2091060_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091060/ERR2091060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091060/22841_3#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091060/22841_3#139.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091060/ERR2091060_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091060/ERR2091060_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091060/22841_3#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091060/22841_3#139.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76762672;4232 ERS1699812 ERX2147854 GENOMIC DN483670V:F6 313962750 2017-08-08 SC_RUN_22841_3#139 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091060/22841_3#139.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091060/22841_3#139.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#139 ERR2091171 SC_EXP_22841_4#62 438 35547c7383bbfa18c2159bd484508fed;a80528e6e044d6980b7caa99a5a2d597 1313 08f6e1266e90183858ec6c4065634058;1107bffc75727b9a128a4f1a6ae85862 SAMEA104035368 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091171/ERR2091171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091171/ERR2091171_2.fastq.gz 2606176 WGS 995a32c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 52911393;57513689 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091171/ERR2091171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091171/ERR2091171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091171/22841_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091171/22841_4#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091171/ERR2091171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091171/ERR2091171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091171/22841_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091171/22841_4#62.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76329282;4382 ERS1699261 ERX2147965 GENOMIC DN477152P:F8 325772000 2017-08-08 SC_RUN_22841_4#62 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091171/22841_4#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091171/22841_4#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#62 ERR2089543 SC_EXP_21999_8#98 461 8adb05dfa11959e8d5d131ade43bc64a;2f2da4e7beba96ab710576cb191ff4f9 1313 b702ab0812a5300023be98aead04a867;d8a51a8167b532328ffee61337d361cb SAMEA104154809 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089543/ERR2089543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089543/ERR2089543_2.fastq.gz 886988 WGS 736082b0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 17316958;18554962 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089543/ERR2089543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089543/ERR2089543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089543/21999_8#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089543/21999_8#98.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089543/ERR2089543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089543/ERR2089543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089543/21999_8#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089543/21999_8#98.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 23242684;1517 ERS1813827 ERX2146337 GENOMIC DN476960M:B2 110873500 2017-08-08 SC_RUN_21999_8#98 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089543/21999_8#98.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089543/21999_8#98.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#98 ERR2091117 SC_EXP_22841_4#8 436 1807f8ea1ddfdb34d594d2d01f1bdf16;fc1d7e792a3f527b01ff25e7f1e481f6 1313 e99bb481f40630b8f903ef279500d6f2;ed794b756166d41a6036c8a7fc8ce8b1 SAMEA104035328 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091117/ERR2091117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091117/ERR2091117_2.fastq.gz 2678326 WGS 972c0820-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 54648390;57072048 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091117/ERR2091117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091117/ERR2091117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091117/22841_4#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091117/22841_4#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2091117/ERR2091117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2091117/ERR2091117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091117/22841_4#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091117/22841_4#8.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78329982;4457 ERS1699221 ERX2147911 GENOMIC DN477152P:H1 334790750 2017-08-08 SC_RUN_22841_4#8 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091117/22841_4#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091117/22841_4#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#8 ERR2089387 SC_EXP_21999_7#125 465 e6b52cd961ee6893efb1630293ac2a3b;a42c6d25a5fd314473e52420ac84fe35 1313 c907cac0895bedf4c2e61fc105217e94;787b250678e63f8ac1c0c130dc9e9f15 SAMEA104154651 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089387/ERR2089387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089387/ERR2089387_2.fastq.gz 2222784 WGS 667a8230-c37a-11e6-b158-3c4a9275d6c8 RANDOM 44157796;49309051 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089387/ERR2089387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089387/ERR2089387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089387/21999_7#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089387/21999_7#125.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089387/ERR2089387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089387/ERR2089387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089387/21999_7#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089387/21999_7#125.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64892416;3756 ERS1813669 ERX2146181 GENOMIC DN476874P:F4 277848000 2017-08-08 SC_RUN_21999_7#125 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089387/21999_7#125.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089387/21999_7#125.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#125 ERR1947775 SC_EXP_21946_6#255 452 1514039e21e6b595f0a683dcb0c2e342;15ffb61bf1d612ddca7c8c25c3693ac4 1313 43a723b48cab2c070a4f813a83076afe;f0baceae83f9a2aa50480c2ed0b5f1c4 SAMEA4561070 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947775/ERR1947775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947775/ERR1947775_2.fastq.gz 2390260 WGS 09ce6b30-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 61427851;84909039 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947775/ERR1947775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947775/ERR1947775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947775/21946_6#255.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947775/21946_6#255.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947775/ERR1947775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947775/ERR1947775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947775/21946_6#255.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947775/21946_6#255.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 107034474;3998 ERS1460249 ERX2013562 GENOMIC 18471360 360929260 2017-04-25 SC_RUN_21946_6#255 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947775/21946_6#255.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947775/21946_6#255.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947659 SC_EXP_21946_6#139 462 1a95849e523dbe90678710ca8d65ffbc;42f23e7180e3c32ca111a1978996b5ae 1313 594422612f384d16c48def620adf94a2;10fdefd5008410c1d282a95b5e8167fc SAMEA17701918 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947659/ERR1947659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947659/ERR1947659_2.fastq.gz 2199300 WGS 3faed690-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 55738877;78494436 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947659/ERR1947659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947659/ERR1947659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947659/21946_6#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947659/21946_6#139.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947659/ERR1947659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947659/ERR1947659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947659/21946_6#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947659/21946_6#139.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 98445346;3774 ERS1461717 ERX2013446 GENOMIC 18471501 332094300 2017-04-25 SC_RUN_21946_6#139 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947659/21946_6#139.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947659/21946_6#139.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947742 SC_EXP_21946_6#222 464 34b3a05b18ca1746a9b8dd9aef4f9918;3dd4beb6f65d07110b9a90b9eac8a585 1313 195a9cabf108329525b42418c275a3dc;f70e7024a4c16a7fdb7fd6c97a2a5671 SAMEA4561037 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947742/ERR1947742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947742/ERR1947742_2.fastq.gz 2368478 WGS 03262a20-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 60982669;86736650 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947742/ERR1947742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947742/ERR1947742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947742/21946_6#222.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947742/21946_6#222.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947742/ERR1947742_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947742/ERR1947742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947742/21946_6#222.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947742/21946_6#222.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 108449455;4016 ERS1460216 ERX2013529 GENOMIC 18471344 357640178 2017-04-25 SC_RUN_21946_6#222 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947742/21946_6#222.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947742/21946_6#222.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947480 SC_EXP_21903_8#326 435 dc102554c497db2d073ee86fc6f77546;d5940c5b8b5de97100595f9291702a4c 1313 3baa85a04f54be956b9e06d999f492bd;bbd9d0f4b94981d9b02c76ef6acefd47 SAMEA4561508 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947480/ERR1947480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947480/ERR1947480_2.fastq.gz 1878586 WGS 2f21c710-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 47059224;68611996 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947480/ERR1947480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947480/ERR1947480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947480/21903_8#326.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947480/21903_8#326.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947480/ERR1947480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947480/ERR1947480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947480/21903_8#326.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947480/21903_8#326.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 83644341;3213 ERS1460687 ERX2013267 GENOMIC 18453185 283666486 2017-04-25 SC_RUN_21903_8#326 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947480/21903_8#326.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947480/21903_8#326.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947610 SC_EXP_21946_6#90 462 3923420f722b1f1a2813d3ca75366251;fa06e2bc01a272804987393f4fd93393 1313 40a2e348cf13d2ba2819a3d3b176fa59;476ba0a3a869662700144084fd125099 SAMEA17665168 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947610/ERR1947610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947610/ERR1947610_2.fastq.gz 1879180 WGS 3de44fc0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 48550803;67889401 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947610/ERR1947610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947610/ERR1947610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947610/21946_6#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947610/21946_6#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947610/ERR1947610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947610/ERR1947610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947610/21946_6#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947610/21946_6#90.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 85211116;3262 ERS1461668 ERX2013397 GENOMIC 18471641 283756180 2017-04-25 SC_RUN_21946_6#90 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947610/21946_6#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947610/21946_6#90.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947461 SC_EXP_21903_8#307 438 4a2f7c61bddc02f9ec6374cd2cb21b21;796d70193594ae67687f8c62292886f7 1313 62ab8ae59c5e12f6c3da01d5ed22b599;961a003455098d09a0b703ae3560e59f SAMEA4561489 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947461/ERR1947461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947461/ERR1947461_2.fastq.gz 1887788 WGS 2e724d30-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 46496661;68752388 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947461/ERR1947461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947461/ERR1947461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947461/21903_8#307.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947461/21903_8#307.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947461/ERR1947461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947461/ERR1947461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947461/21903_8#307.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947461/21903_8#307.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 83916528;3261 ERS1460668 ERX2013248 GENOMIC 18453242 285055988 2017-04-25 SC_RUN_21903_8#307 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947461/21903_8#307.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947461/21903_8#307.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947362 SC_EXP_21903_8#208 435 e083564907e64a71ef454a2d82f3c86b;1168caf58e97259a39013633b9870d1c 1313 25ddccb7fb8dd8b268fe722a40817e24;755c85d0ac2e47bdcf2c2fc274dd178a SAMEA4561390 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947362/ERR1947362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947362/ERR1947362_2.fastq.gz 2185706 WGS 25453600-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53586966;79433100 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947362/ERR1947362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947362/ERR1947362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947362/21903_8#208.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947362/21903_8#208.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947362/ERR1947362_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947362/ERR1947362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947362/21903_8#208.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947362/21903_8#208.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 96929065;3719 ERS1460569 ERX2013149 GENOMIC 18453061 330041606 2017-04-25 SC_RUN_21903_8#208 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947362/21903_8#208.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947362/21903_8#208.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947447 SC_EXP_21903_8#293 423 5c1eecaae6be356bad5eb62b50c8a126;86804eb95e2f0e097427dd6042e4043c 1313 ab2bb5461563dd75a4dacfdf29afb8b9;0f8850dc931e039cb7d6a7f6de7bf811 SAMEA4561475 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947447/ERR1947447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947447/ERR1947447_2.fastq.gz 2061100 WGS 2db4a280-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 50494794;73815227 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947447/ERR1947447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947447/ERR1947447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947447/21903_8#293.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947447/21903_8#293.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947447/ERR1947447_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947447/ERR1947447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947447/21903_8#293.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947447/21903_8#293.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 90698571;3552 ERS1460654 ERX2013234 GENOMIC 18453169 311226100 2017-04-25 SC_RUN_21903_8#293 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947447/21903_8#293.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947447/21903_8#293.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947458 SC_EXP_21903_8#304 427 1b21eb59d0f5679d9484a7344101f5eb;e720fa0c9eb80367e11d0c46d9c4da4c 1313 2091ff5b8b375a4124967f9a15c3208f;3a34d9b76b3f83176de00be9ae4ca3a8 SAMEA4561486 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947458/ERR1947458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947458/ERR1947458_2.fastq.gz 2241460 WGS 2e4522b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 54794737;80579808 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947458/ERR1947458_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947458/ERR1947458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947458/21903_8#304.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947458/21903_8#304.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947458/ERR1947458_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947458/ERR1947458_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947458/21903_8#304.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947458/21903_8#304.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 98968696;3819 ERS1460665 ERX2013245 GENOMIC 18453206 338460460 2017-04-25 SC_RUN_21903_8#304 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947458/21903_8#304.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947458/21903_8#304.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947443 SC_EXP_21903_8#289 419 4dc34e97d670a0d4f20ca84b23d1d709;4c452ea1ade9a646f51c490abc1dd9d4 1313 24b53b6952eb772d4ed8a629fcedc815;8e6068d2d1813aa402d3737c45a1b0d3 SAMEA4561471 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947443/ERR1947443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947443/ERR1947443_2.fastq.gz 2139196 WGS 2d8c0be0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53425978;78748462 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947443/ERR1947443_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947443/ERR1947443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947443/21903_8#289.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947443/21903_8#289.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947443/ERR1947443_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947443/ERR1947443_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947443/21903_8#289.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947443/21903_8#289.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 96468537;3652 ERS1460650 ERX2013230 GENOMIC 18453216 323018596 2017-04-25 SC_RUN_21903_8#289 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947443/21903_8#289.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947443/21903_8#289.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947295 SC_EXP_21903_8#141 416 035e08d08f0ffb036ef81f154aab2761;9c473fb66da4631b510d7b9313e2140b 1313 9be0ae72f154ec5b330329aba4c3a6f8;e5af5cfa4716d79a7a5115abd90444a9 SAMEA4561322 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947295/ERR1947295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947295/ERR1947295_2.fastq.gz 2996996 WGS 1d2a7930-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 71746062;105147100 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947295/ERR1947295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947295/ERR1947295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947295/21903_8#141.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947295/21903_8#141.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947295/ERR1947295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947295/ERR1947295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947295/21903_8#141.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947295/21903_8#141.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 130688741;5041 ERS1460501 ERX2013082 GENOMIC 18430292 452546396 2017-04-25 SC_RUN_21903_8#141 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947295/21903_8#141.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947295/21903_8#141.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947188 SC_EXP_21903_8#34 454 b168a3790aade1e800235010f47aac71;51a9c01af882b28f37cec7aa0a166c2f 1313 37f2069eb228f6c486f74ab122fade9d;2ab55f302d8c5a6608a619ad828667cf SAMEA4561214 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947188/ERR1947188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947188/ERR1947188_2.fastq.gz 2131078 WGS 13a249b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 52414500;78658243 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947188/ERR1947188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947188/ERR1947188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947188/21903_8#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947188/21903_8#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947188/ERR1947188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947188/ERR1947188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947188/21903_8#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947188/21903_8#34.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 96719803;3669 ERS1460393 ERX2012975 GENOMIC 18430205 321792778 2017-04-25 SC_RUN_21903_8#34 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947188/21903_8#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947188/21903_8#34.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947151 SC_EXP_21903_6#181 429 df3beac3116b32aee91b715094316454;9e4dfc80e8c30e45e5a30d3ec92ffc3a 1313 ee6daa2aa267bb14341c288e8f0674f5;def7f5c63b419ff1ad3df3f043eb8910 SAMEA4560992 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947151/ERR1947151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947151/ERR1947151_2.fastq.gz 2573984 WGS 018f8490-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 60405760;84465725 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947151/ERR1947151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947151/ERR1947151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947151/21903_6#181.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947151/21903_6#181.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947151/ERR1947151_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947151/ERR1947151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947151/21903_6#181.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947151/21903_6#181.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105609923;4318 ERS1460171 ERX2012938 GENOMIC 18408067 388671584 2017-04-25 SC_RUN_21903_6#181 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947151/21903_6#181.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947151/21903_6#181.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1202370 SC_EXP_17870_8#110 447 18faeba1c3cf09a9d006e7946474c4ca;b5f652c9f71305d1a0eeba78a43b454d 1313 b15d92162305a5199a7069055be41068;ea73ebbd68ac5bd0f052071b1a61ce1c SAMEA3389854 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202370/ERR1202370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202370/ERR1202370_2.fastq.gz 2478868 WGS GPS_MW_BQN187_R1-sc-2296098 RANDOM 45462523;49224336 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202370/ERR1202370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202370/ERR1202370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202370/17870_8#110.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202370/17870_8#110.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202370/ERR1202370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202370/ERR1202370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202370/17870_8#110.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202370/17870_8#110.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70621966;4162 ERS725957 ERX1274612 GENOMIC 14977648 309858500 2016-01-12 SC_RUN_17870_8#110 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202370/17870_8#110.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202370/17870_8#110.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#110 ERR1202176 SC_EXP_17870_7#106 463 ab469491c6c364e8902e933178d7cb65;4d38857ae54f80e320d6907e153941dc 1313 e3bca2b40e4bf5b9815e1ccd952a4ce6;c2517a5c94981d1c528503669d5581fd SAMEA3389649 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202176/ERR1202176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202176/ERR1202176_2.fastq.gz 2169462 WGS GPS_MW_BND1FX-sc-2295891 RANDOM 41755621;45212799 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202176/ERR1202176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202176/ERR1202176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202176/17870_7#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202176/17870_7#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202176/ERR1202176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202176/ERR1202176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202176/17870_7#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202176/17870_7#106.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64380391;3713 ERS725752 ERX1274418 GENOMIC 14978396 271182750 2016-01-12 SC_RUN_17870_7#106 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202176/17870_7#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202176/17870_7#106.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#106 ERR1192098 SC_EXP_17794_8#87 441 4782299f59ac2bea782e7d1769be0d81;45eb1a8e8b2172fd9c9121ab0f0ec5c8 1313 4ac8d6d7de6b42c1b2451009beca3216;219ec62f263e71af0cabea794a14cafb SAMEA3381634 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192098/ERR1192098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192098/ERR1192098_2.fastq.gz 2905090 WGS GPS_GM_2145-sc-2279514 RANDOM 55636017;57414539 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192098/ERR1192098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1192098/ERR1192098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192098/17794_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192098/17794_8#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1192098/ERR1192098_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1192098/ERR1192098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192098/17794_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192098/17794_8#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87879401;4808 ERS719893 ERX1265482 GENOMIC 14941613 363136250 2015-12-17 SC_RUN_17794_8#87 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192098/17794_8#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192098/17794_8#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#87 ERR1202162 SC_EXP_17870_7#92 463 e8f5c4d0f6523f47e9dc6e4b06a08be3;dd3d6f6671bf73bdd2fc2a193a2e14fa 1313 af40103526611a1c938e3ad565a926e3;3c74c64b1b941a703c65ad8097bb9f91 SAMEA3389387 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202162/ERR1202162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202162/ERR1202162_2.fastq.gz 2922716 WGS GPS_MW_BND1BR-sc-2295862 RANDOM 54350606;55851522 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202162/ERR1202162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202162/ERR1202162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202162/17870_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202162/17870_7#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202162/ERR1202162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202162/ERR1202162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202162/17870_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202162/17870_7#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81936747;4863 ERS725490 ERX1274404 GENOMIC 14978321 365339500 2016-01-12 SC_RUN_17870_7#92 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202162/17870_7#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202162/17870_7#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#92 ERR064078 SC_EXP_6938_6#12 230 2b494cddb1f25faf1b54228c0f63536a 1313 1dccd6103ee4649ec54acf0b1e53f282;925109be164aa441c3bb0b0f2b5b1d0d SAMEA1029074 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064078/ERR064078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064078/ERR064078_2.fastq.gz 13553608 WGS SMRU2676-sc-2011-01-27-1062889 RANDOM 918737840;946258959 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064078/ERR064078_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064078/ERR064078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064078/6938_6#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064078/ERR064078_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064078/ERR064078_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064078/6938_6#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 2371268713 ERS022186 ERX042051 GENOMIC 3651696 2033041200 2012-03-19 SC_RUN_6938_6#12 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064078/6938_6#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063999 SC_EXP_6925_6#22 232 52c88fc1628172399c8cbc49360c695d 1313 bdb98cf5d370e0b5efe13cc31fd590e1;45c7aad1674508a042cd25d61765f9ac SAMEA1025810 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063999/ERR063999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063999/ERR063999_2.fastq.gz 3187768 WGS SMRU2206-sc-2011-01-27-1062419 RANDOM 193253267;193833235 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063999/ERR063999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063999/ERR063999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063999/6925_6#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063999/ERR063999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063999/ERR063999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063999/6925_6#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 503232770 ERS021715 ERX041972 GENOMIC 3611020 478165200 2012-01-05 SC_RUN_6925_6#22 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063999/6925_6#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048109 SC_EXP_6631_3#24 227 a53ce52d1a0dd5f58b182c8901502b6f 1313 bd12dd7d434e5d889634543d0eafa3b5;b3fc7bfd9350836639af7c8040e515d0 SAMEA1023958 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048109/ERR048109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048109/ERR048109_2.fastq.gz 3956519 WGS SMRU432-sc-2011-01-27-1060621 RANDOM 217789837;204433675 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048109/ERR048109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048109/ERR048109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048109/6631_3#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048109/ERR048109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048109/ERR048109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048109/6631_3#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 544589160 ERS019590 ERX025172 GENOMIC 2952219 593477850 2011-10-11 SC_RUN_6631_3#24 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048109/6631_3#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054238 SC_EXP_6710_6#17 229 16f3cf3dc848869b3385a344252232b7 1313 0d6f60e10689b35e03f026a803894b56;2d471739d3f61b0a6e65df5d8f9a591e SAMEA1025532 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054238/ERR054238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054238/ERR054238_2.fastq.gz 6970677 WGS SMRU1361-sc-2011-01-27-1061574 RANDOM 406052534;427344422 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054238/ERR054238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054238/ERR054238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054238/6710_6#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054238/ERR054238_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054238/ERR054238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054238/6710_6#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1027970829 ERS020871 ERX031284 GENOMIC 3348819 1045601550 2011-11-15 SC_RUN_6710_6#17 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054238/6710_6#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054635 SC_EXP_6755_6#7 249 467e8346d29891d3da32d1cba75e8a15 1313 26230de53827eb150178484c3d729579;343f0d773d4202b4dbb0bd92a56e7d10 SAMEA1025496 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054635/ERR054635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054635/ERR054635_2.fastq.gz 4076143 WGS SMRU1183-sc-2011-01-27-1061396 RANDOM 220043172;229850718 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054635/ERR054635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054635/ERR054635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054635/6755_6#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054635/ERR054635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054635/ERR054635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054635/6755_6#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 560088295 ERS020693 ERX031681 GENOMIC 3308031 611421450 2011-11-15 SC_RUN_6755_6#7 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054635/6755_6#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054404 SC_EXP_6736_8#15 242 3623824827fbaa27d79909640399151c 1313 617bd4219e11e12e07932800effa6350;bcdf58dde0cde4d2598dbff7666b1a35 SAMEA1025253 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054404/ERR054404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054404/ERR054404_2.fastq.gz 7542229 WGS SMRU1311-sc-2011-01-27-1061524 RANDOM 406952947;433333720 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054404/ERR054404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054404/ERR054404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054404/6736_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054404/ERR054404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054404/ERR054404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054404/6736_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1065680875 ERS020821 ERX031450 GENOMIC 3308158 1131334350 2011-11-15 SC_RUN_6736_8#15 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054404/6736_8#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054286 SC_EXP_6710_8#17 230 1857b13d0740bea13eb3988d8e9d6fc8 1313 727e5575af9c4892493f3405a3a15d88;e9145c0fb0bcf6157b718bbf25af0c53 SAMEA1025395 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054286/ERR054286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054286/ERR054286_2.fastq.gz 7129215 WGS SMRU1409-sc-2011-01-27-1061622 RANDOM 401870254;419475106 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054286/ERR054286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054286/ERR054286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054286/6710_8#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054286/ERR054286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054286/ERR054286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054286/6710_8#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1046424671 ERS020919 ERX031332 GENOMIC 3348867 1069382250 2011-11-15 SC_RUN_6710_8#17 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054286/6710_8#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051559 SC_EXP_6731_1#5 218 5ca1e1b68473f08db1671589f278d2b3 1313 9c143a962c673f9f4fe75c86e27dd621;f73341f3b268513aa53c63085222ad23 SAMEA1024839 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051559/ERR051559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051559/ERR051559_2.fastq.gz 1808130 WGS SMRU989-sc-2011-01-27-1061202 RANDOM 97679051;100703404 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051559/ERR051559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051559/ERR051559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051559/6731_1#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051559/ERR051559_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051559/ERR051559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051559/6731_1#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 253865228 ERS020499 ERX028607 GENOMIC 3246139 271219500 2011-11-02 SC_RUN_6731_1#5 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051559/6731_1#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051512 SC_EXP_6730_7#6 229 20e95c71c05a3b8f9476f23d1579400e 1313 d8fb3272de17ff9cd9bf54d3cccbf946;49c5f6416d776e7a8ad7ac46d4bab470 SAMEA1024698 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051512/ERR051512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051512/ERR051512_2.fastq.gz 5883820 WGS SMRU702-sc-2011-01-27-1060891 RANDOM 319314002;330670094 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051512/ERR051512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051512/ERR051512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051512/6730_7#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051512/ERR051512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051512/ERR051512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051512/6730_7#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 807954802 ERS020212 ERX028560 GENOMIC 3100204 882573000 2011-11-02 SC_RUN_6730_7#6 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051512/6730_7#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR057805 SC_EXP_6807_2#23 221 1ad8bfab884b88e1f1afb03101c44525 1313 66fed8b31ab23eb871e8ceefd44e6991;703a0503fc4f39cda85518567fa9f8f7 SAMEA1025344 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057805/ERR057805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057805/ERR057805_2.fastq.gz 4080229 WGS SMRU1607-sc-2011-01-27-1061820 RANDOM 244863801;243263974 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057805/ERR057805_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057805/ERR057805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057805/6807_2#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057805/ERR057805_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057805/ERR057805_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057805/6807_2#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 640447854 ERS021117 ERX035651 GENOMIC 3414303 612034350 2011-12-05 SC_RUN_6807_2#23 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057805/6807_2#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR066266 SC_EXP_6983_4#91 238 ae4493c20283e8fc1b06b3f7fe64f40a 1313 fdb864449b696e083720ca0540ad07ff;02d479cf5b62e38b5cbf08e14d58d69c SAMEA1026257 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066266/ERR066266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066266/ERR066266_2.fastq.gz 2811588 WGS SMRU2299-sc-2011-01-27-1062512 RANDOM 199019567;201816413 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066266/ERR066266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066266/ERR066266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066266/6983_4#91.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066266/ERR066266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066266/ERR066266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066266/6983_4#91.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 509984420 ERS021808 ERX044129 GENOMIC 3594919 421738200 2012-01-10 SC_RUN_6983_4#91 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066266/6983_4#91.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR049106 SC_EXP_6649_8#4 219 58a44cc8ce70b73fb5a56d5b9d8b070d 1313 479c0ae91ad75b27aae80d53a925965f;81a7f19bdbd4a089b0c581e573998482 SAMEA1024096 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049106/ERR049106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049106/ERR049106_2.fastq.gz 6008365 WGS SMRU172-sc-2011-01-27-1060361 RANDOM 348811738;365540800 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049106/ERR049106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049106/ERR049106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049106/6649_8#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049106/ERR049106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049106/ERR049106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049106/6649_8#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 901745019 ERS019330 ERX026173 GENOMIC 2950505 901254750 2011-10-18 SC_RUN_6649_8#4 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049106/6649_8#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR059999 SC_EXP_6840_1#19 232 cedef6341b5d1d1bedc8147811935fa2 1313 a23b62059e97dca3dbb66661f1e4286f;16bdf9121dea94986cf3c25760a7f1b9 SAMEA1025890 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059999/ERR059999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059999/ERR059999_2.fastq.gz 6144614 WGS SMRU1771-sc-2011-01-27-1061984 RANDOM 400532127;400900902 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059999/ERR059999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059999/ERR059999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059999/6840_1#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059999/ERR059999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059999/ERR059999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059999/6840_1#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1008387589 ERS021281 ERX037837 GENOMIC 3481288 921692100 2012-03-22 SC_RUN_6840_1#19 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR059/ERR059999/6840_1#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR065312 SC_EXP_6925_2#75 242 c5b651bdea3dd32b667a30d2c6c85836 1313 40279930fc6ef885ac6b87d1f45818ab;35547dd5d4868b93a86e0ba51791ef45 SAMEA1032581 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065312/ERR065312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065312/ERR065312_2.fastq.gz 2974558 WGS 3056-sc-2011-08-01T09:43:02Z-1249941 RANDOM 161046238;162883718 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065312/ERR065312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065312/ERR065312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065312/6925_2#75.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065312/ERR065312_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065312/ERR065312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065312/6925_2#75.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 429814587 ERS043876 ERX043285 GENOMIC 3610885 446183700 2012-01-05 SC_RUN_6925_2#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065312/6925_2#75.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR046195 SC_EXP_6512_7#8 241 70ffc9485dddb3a422b6747647a0cdab 1313 4087889e3f14c94c5be0624af062e9a0;12dd87bfc420466ea056f42987ac42e6 SAMEA1026372 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046195/ERR046195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046195/ERR046195_2.fastq.gz 8712707 WGS UoS4206-sc-2011-02-14-1078424 RANDOM 459309171;458424867 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046195/ERR046195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046195/ERR046195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046195/6512_7#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046195/ERR046195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046195/ERR046195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046195/6512_7#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1142827088 ERS023370 ERX023257 GENOMIC 2735150 1306906050 2011-09-20 SC_RUN_6512_7#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046195/6512_7#8.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_7#8 ERR045389 SC_EXP_6486_6#18 232 a59d37d8881268f827fc44efb600f7f2 1313 f60a4282d53408e65a7674ea8ee8138e;e32fbc79fe35e56ec9371fcdc9e60afb SAMEA1026340 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045389/ERR045389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045389/ERR045389_2.fastq.gz 5778044 WGS UoS4385-sc-2011-02-14-1078478 RANDOM 314980351;321659076 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045389/ERR045389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045389/ERR045389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045389/6486_6#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045389/ERR045389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045389/ERR045389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045389/6486_6#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 801762420 ERS023424 ERX022451 GENOMIC 2744993 866706600 2011-09-14 SC_RUN_6486_6#18 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045389/6486_6#18.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_6#18 ERR044920 SC_EXP_6470_5#15 192 e55642c458fb6b7a75c4da7db6484aa0 1313 635e5dd5d78fd9d1956f4a1d5b2f6380;d81476f62ee764960333f13a04e9bf99 SAMEA1026826 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044920/ERR044920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044920/ERR044920_2.fastq.gz 4395227 WGS UoS0252-sc-2011-02-14-1078123 RANDOM 215267229;220360781 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044920/ERR044920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044920/ERR044920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044920/6470_5#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044920/ERR044920_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044920/ERR044920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044920/6470_5#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 577839098 ERS023069 ERX022028 GENOMIC 2719150 659284050 2011-09-06 SC_RUN_6470_5#15 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044920/6470_5#15.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_5#15 ERR044871 SC_EXP_6470_3#14 187 b83a6e66920a1287ea2d87b2c8c64d78 1313 91b157b4eaf175d6e953e3288c5f84bd;549eaec9f62f0d8497eb113f9583ccee SAMEA1026654 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044871/ERR044871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044871/ERR044871_2.fastq.gz 4950676 WGS UoS0061-sc-2011-02-14-1078074 RANDOM 246765303;258528138 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044871/ERR044871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044871/ERR044871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044871/6470_3#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044871/ERR044871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044871/ERR044871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044871/6470_3#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 665704281 ERS023019 ERX021979 GENOMIC 2719101 742601400 2011-09-06 SC_RUN_6470_3#14 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044871/6470_3#14.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#14 ERR044864 SC_EXP_6470_3#7 187 c11cdb9f784794ca017626484167110e 1313 f29941907d5640e8e64871dd0b947a7d;84d1cd4f864198933e386a7ef875c3a1 SAMEA1026623 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044864/ERR044864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044864/ERR044864_2.fastq.gz 5522400 WGS UoS0026-sc-2011-02-14-1078067 RANDOM 273156659;285894845 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044864/ERR044864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044864/ERR044864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044864/6470_3#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044864/ERR044864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044864/ERR044864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044864/6470_3#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 733329572 ERS023012 ERX021972 GENOMIC 2719094 828360000 2011-09-06 SC_RUN_6470_3#7 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044864/6470_3#7.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#7 ERR045021 SC_EXP_6472_7#20 249 0b334432bce741d3205d87cd956312ac 1313 a1ac999e9b3acedf2f066081f7ab251f;15ee67e6f270648318982bdf20a270b6 SAMEA1026331 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045021/ERR045021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045021/ERR045021_2.fastq.gz 5406920 WGS UoS2236-sc-2011-02-14-1078224 RANDOM 257436251;265720334 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045021/ERR045021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045021/ERR045021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045021/6472_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045021/ERR045021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045021/ERR045021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045021/6472_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 666479761 ERS023170 ERX022129 GENOMIC 2732392 811038000 2011-09-06 SC_RUN_6472_7#20 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045021/6472_7#20.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_7#20 ERR044996 SC_EXP_6472_6#19 244 ed237137f9a5036993b0567ed727adee 1313 edbc55a002b13f291a5571af62c15df8;6dfe47bb26988b39941e589aecd7d76b SAMEA1026787 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044996/ERR044996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044996/ERR044996_2.fastq.gz 4977124 WGS UoS2122-sc-2011-02-14-1078199 RANDOM 239509996;240649341 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044996/ERR044996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044996/ERR044996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044996/6472_6#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044996/ERR044996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044996/ERR044996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044996/6472_6#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 622455465 ERS023145 ERX022104 GENOMIC 2732367 746568600 2011-09-06 SC_RUN_6472_6#19 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044996/6472_6#19.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_6#19 ERR046115 SC_EXP_6512_3#20 204 0b157f212c79b91c1d0ec9c7537b90e5 1313 3cede5c854bbd1361e91c6289628c4b5;80aabed52f775a57c0cf3a4be2d7ccbf SAMEA1026585 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046115/ERR046115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046115/ERR046115_2.fastq.gz 6073492 WGS UoS3249-sc-2011-02-14-1078344 RANDOM 364533975;367496952 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046115/ERR046115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046115/ERR046115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046115/6512_3#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046115/ERR046115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046115/ERR046115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046115/6512_3#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 935689997 ERS023290 ERX023177 GENOMIC 2734319 911023800 2011-09-20 SC_RUN_6512_3#20 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046115/6512_3#20.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#20 ERR044978 SC_EXP_6472_6#1 244 c8a56a737f08a88765e138b6d83beaa8 1313 6034bba848444681cc0218b02f5cc3d5;09de7f3fc9154381408b49c693339c9f SAMEA1026679 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044978/ERR044978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044978/ERR044978_2.fastq.gz 5306507 WGS UoS2041-sc-2011-02-14-1078181 RANDOM 254863367;255882241 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044978/ERR044978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044978/ERR044978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044978/6472_6#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044978/ERR044978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044978/ERR044978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044978/6472_6#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 663112586 ERS023127 ERX022086 GENOMIC 2732349 795976050 2011-09-06 SC_RUN_6472_6#1 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044978/6472_6#1.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_6#1 ERR039652 SC_EXP_6259_8#21 183 22def75976906fb24d01e4dffe258278 1313 062b73c1397ba3d455acd556380b188b;ae60bb5a5274843b063742b6a5cf2839 SAMEA974667 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039652/ERR039652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039652/ERR039652_2.fastq.gz 4031356 WGS SMRU93-sc-2011-01-27-1026518 RANDOM 200109558;210479005 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039652/ERR039652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039652/ERR039652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039652/6259_8#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039652/ERR039652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039652/ERR039652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039652/6259_8#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 531921317 ERS019251 ERX016825 GENOMIC 2591023 604703400 2011-07-27 SC_RUN_6259_8#21 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039652/6259_8#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR039585 SC_EXP_6259_6#2 172 541a1c0450f14052ee46f6a4bc1e5b24 1313 13d88ec2832c91fa37676c7f872504bd;b04ac63744cc97f013361a3eb6f876b5 SAMEA974622 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039585/ERR039585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039585/ERR039585_2.fastq.gz 3975866 WGS SMRU26-sc-2011-01-27-1026451 RANDOM 207743755;213074767 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039585/ERR039585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039585/ERR039585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039585/6259_6#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039585/ERR039585_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039585/ERR039585_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039585/6259_6#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 544937597 ERS019184 ERX016758 GENOMIC 2590904 596379900 2011-07-27 SC_RUN_6259_6#2 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039585/6259_6#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR039621 SC_EXP_6259_7#14 201 129545b9f7fa58e5d2f8a739e00c6f73 1313 ad560fbfbcec075ef97baad2e7af0206;65632972ee04e69ad923638e5d34eb1d SAMEA974634 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039621/ERR039621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039621/ERR039621_2.fastq.gz 3854460 WGS SMRU62-sc-2011-01-27-1026487 RANDOM 196803265;205575806 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039621/ERR039621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039621/ERR039621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039621/6259_7#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039621/ERR039621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039621/ERR039621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039621/6259_7#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 523815780 ERS019220 ERX016794 GENOMIC 2590966 578169000 2011-07-27 SC_RUN_6259_7#14 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039621/6259_7#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR1788258 SC_EXP_21127_1#60 432 e71884c03974fd0fbecdb6fc637ec3df;f91f7393e8bae424c0edfcebb688d108 1313 cd8917c780250809ad3109e083e53b96;026e21d0b23a446dca8004117c5c174d SAMEA4388209 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788258/ERR1788258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788258/ERR1788258_2.fastq.gz 2138986 WGS 64aebd90-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 41366440;40161871 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788258/ERR1788258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788258/ERR1788258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788258/21127_1#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788258/21127_1#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788258/ERR1788258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788258/ERR1788258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788258/21127_1#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788258/21127_1#60.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 57737236;3636 ERS1299658 ERX1851981 GENOMIC DN465133W:E8 267373250 2017-01-11 SC_RUN_21127_1#60 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788258/21127_1#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788258/21127_1#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#60 ERR1422683 SC_EXP_19084_8#170 460 e6b4edf618e96a8c5c64e32726c889e0;b53e55168aaa8f9c1953ba676fa06b6c 1313 3de05a8aaf16425f94f1840c006ee256;47992edd054a95b4854491a820e199a3 SAMEA3714507 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422683/ERR1422683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422683/ERR1422683_2.fastq.gz 2345334 WGS 561d3fd0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 54284631;55719978 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422683/ERR1422683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422683/ERR1422683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422683/19084_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422683/19084_8#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422683/ERR1422683_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422683/ERR1422683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422683/19084_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422683/19084_8#170.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79804460;3990 ERS1021656 ERX1493265 GENOMIC 15758575 293166750 2016-05-24 SC_RUN_19084_8#170 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422683/19084_8#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422683/19084_8#170.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#170 ERR1453703 SC_EXP_19341_3#55 431 a4401d48aa9bb9be1987fba166c0a58a;60098977eea98699b31631f1b8278fd3 1313 112d6ea7e1e3a4d510da0c6a71377d25;24cd114c6ec5fb9c55d974bbd7067d01 SAMEA3714018 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453703/ERR1453703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453703/ERR1453703_2.fastq.gz 2522070 WGS 3aab7e10-41bd-11e5-998e-3c4a9275d6c6 RANDOM 52620176;56292567 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453703/ERR1453703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/003/ERR1453703/ERR1453703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453703/19341_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453703/19341_3#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/003/ERR1453703/ERR1453703_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/003/ERR1453703/ERR1453703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453703/19341_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453703/19341_3#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77838715;4241 ERS1021167 ERX1524181 GENOMIC 16008492 315258750 2016-06-14 SC_RUN_19341_3#55 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453703/19341_3#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453703/19341_3#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#55 ERR1214704 SC_EXP_18090_5#40 500 dec504557692c3d67efacb333ad463e3;200958e3cd7efd9632334613f0f4d665 1313 04eb2cdfb977874d52c7bc5acaf2f221;6f750f34d3849a4a935a3e528cd2b732 SAMEA3353840 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214704/ERR1214704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214704/ERR1214704_2.fastq.gz 8621632 WGS GPS_ZA_carriage_SP1766-sc-2278444 RANDOM 168180952;180944825 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214704/ERR1214704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214704/ERR1214704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214704/18090_5#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214704/18090_5#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/004/ERR1214704/ERR1214704_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/004/ERR1214704/ERR1214704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214704/18090_5#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214704/18090_5#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261622129;14215 ERS708195 ERX1286917 GENOMIC 15112160 1077704000 2016-01-19 SC_RUN_18090_5#40 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214704/18090_5#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214704/18090_5#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_5#40 ERR1422373 SC_EXP_19084_7#44 464 98728c7cf5553d10dd6f6ae48b36c9a9;eda682f9a3725bcc570ec4063897c946 1313 206c97d34d40d25ffc432f0d67a58bf0;473e09e2faa0ecc22782b95966b271e6 SAMEA3714197 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422373/ERR1422373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422373/ERR1422373_2.fastq.gz 2076972 WGS 4520a5a0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 44531321;45332335 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422373/ERR1422373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422373/ERR1422373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422373/19084_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422373/19084_7#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422373/ERR1422373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422373/ERR1422373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422373/19084_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422373/19084_7#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63284754;3580 ERS1021346 ERX1492955 GENOMIC 15738013 259621500 2016-05-24 SC_RUN_19084_7#44 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422373/19084_7#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422373/19084_7#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#44 ERR1202576 SC_EXP_17966_5#126 464 932bd5b1a79e5fb848bbeb60d315d3bd;f4e7e7fc6e0c2ad4cb334c72bc1d8ac9 1313 4f7c53b7df23b693c7ed68a3e4e5c95c;7c7009e2fba0ba5e1d59d9f282e19d64 SAMEA3430863 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202576/ERR1202576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202576/ERR1202576_2.fastq.gz 2239730 WGS GPS_US_2009218391_R1-sc-2296384 RANDOM 38720924;40848086 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202576/ERR1202576_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202576/ERR1202576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202576/17966_5#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202576/17966_5#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202576/ERR1202576_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202576/ERR1202576_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202576/17966_5#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202576/17966_5#126.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56086825;3758 ERS740148 ERX1274818 GENOMIC 15024754 279966250 2016-01-12 SC_RUN_17966_5#126 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202576/17966_5#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202576/17966_5#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#126 ERR1202389 SC_EXP_17870_8#129 447 74ed936db338f1da793b7eee4764bd3c;e33c7279d8254ed27e02b9111828aae4 1313 47a98544dd8febb3c39ef335cce06c71;bd6f5a22e419ab7cb0402e2aa1030974 SAMEA3389892 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202389/ERR1202389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202389/ERR1202389_2.fastq.gz 2825880 WGS GPS_MW_BAP3C4_R1-sc-2296136 RANDOM 51254446;55343707 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202389/ERR1202389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202389/ERR1202389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202389/17870_8#129.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202389/17870_8#129.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202389/ERR1202389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202389/ERR1202389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202389/17870_8#129.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202389/17870_8#129.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79556995;4773 ERS725995 ERX1274631 GENOMIC 14977591 353235000 2016-01-12 SC_RUN_17870_8#129 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202389/17870_8#129.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202389/17870_8#129.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#129 ERR1106738 SC_EXP_17428_8#115 478 c8da70b091b5216b8b85a549dee38524;40ff347a8dd5f77c3e63af65e1feab09 1313 7f21005ba367b6b616827f2339d70c07;9d24e3703bed6b1744cbd1c1f92e3af7 SAMEA3381329 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/008/ERR1106738/ERR1106738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/008/ERR1106738/ERR1106738_2.fastq.gz 2274390 WGS GPS_GM_1841-sc-2279142 RANDOM 39295086;41636918 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/008/ERR1106738/ERR1106738_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/008/ERR1106738/ERR1106738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106738/17428_8#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106738/17428_8#115.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/008/ERR1106738/ERR1106738_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/008/ERR1106738/ERR1106738_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106738/17428_8#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106738/17428_8#115.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 61782407;3875 ERS719588 ERX1186269 GENOMIC 14702555 284298750 2015-11-03 SC_RUN_17428_8#115 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106738/17428_8#115.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106738/17428_8#115.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#115 ERR1066357 SC_EXP_17175_8#73 467 e5ed5a59d8e2c60c20bd0f5bac03902b;c346da5648011c424794f74a9eeaba94 1313 9c9389e6790360f40125a32fa19580bd;017d17c57d14837bcaa346ed4acded2d SAMEA3354041 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066357/ERR1066357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066357/ERR1066357_2.fastq.gz 5912622 WGS GPS_ZA_2954-sc-2278647 RANDOM 106262489;110196213 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066357/ERR1066357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066357/ERR1066357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066357/17175_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066357/17175_8#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066357/ERR1066357_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066357/ERR1066357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066357/17175_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066357/17175_8#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 168810190;9767 ERS708396 ERX1146507 GENOMIC 14455695 739077750 2015-10-13 SC_RUN_17175_8#73 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066357/17175_8#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066357/17175_8#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#73 ERR1066278 SC_EXP_17175_7#85 468 f147a74d10b2823310c557a75643859b;a6d04814cbb519a3afb540089c5e9958 1313 25cc293fbbb7ffb243785d5c43ee4266;a57a2c05c391875a026d4a565fc9b597 SAMEA3354072 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066278/ERR1066278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066278/ERR1066278_2.fastq.gz 5308586 WGS GPS_ZA_2877-sc-2278678 RANDOM 93801187;101138959 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066278/ERR1066278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066278/ERR1066278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066278/17175_7#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066278/17175_7#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066278/ERR1066278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066278/ERR1066278_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066278/17175_7#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066278/17175_7#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 150700165;8777 ERS708427 ERX1146428 GENOMIC 14427489 663573250 2015-10-13 SC_RUN_17175_7#85 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066278/17175_7#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066278/17175_7#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#85 ERR1066325 SC_EXP_17175_8#41 467 a31ae9f88d6d241e7cc0b5e47f537bc9;fb1da5159590852f740829a2a5390bc6 1313 169adcc1d9a23c2d10715b75d937845d;d25a00f4fd69f9fb70379d366de6a01a SAMEA3353979 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066325/ERR1066325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066325/ERR1066325_2.fastq.gz 5336116 WGS GPS_ZA_2922-sc-2278585 RANDOM 98888761;103073138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066325/ERR1066325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066325/ERR1066325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066325/17175_8#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066325/17175_8#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066325/ERR1066325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066325/ERR1066325_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066325/17175_8#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066325/17175_8#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 154442003;8750 ERS708334 ERX1146475 GENOMIC 14455691 667014500 2015-10-13 SC_RUN_17175_8#41 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066325/17175_8#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066325/17175_8#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#41 ERR1066343 SC_EXP_17175_8#59 467 40e2f8617ba64b35b215deb6012e74a7;ea546c3a3a78138f50fde25937b5dc4b 1313 90c8a856fcb024e385e599f57cd6ddb3;27c6488d6ca3ee2188a394fb023fa8fe SAMEA3354013 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066343/ERR1066343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066343/ERR1066343_2.fastq.gz 5428974 WGS GPS_ZA_2940-sc-2278619 RANDOM 97130850;99472645 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066343/ERR1066343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066343/ERR1066343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066343/17175_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066343/17175_8#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066343/ERR1066343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066343/ERR1066343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066343/17175_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066343/17175_8#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 151469097;8996 ERS708368 ERX1146493 GENOMIC 14455717 678621750 2015-10-13 SC_RUN_17175_8#59 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066343/17175_8#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066343/17175_8#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#59 ERR1066263 SC_EXP_17175_7#70 468 60b973ab0d85af387f7c081f66b45b6c;a338f664ff33d8d45956db962500a560 1313 4f0e5ea381351e2c2246d3f554ec255c;8532155b8b0161e38dd46baa853b7ca3 SAMEA3354040 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066263/ERR1066263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066263/ERR1066263_2.fastq.gz 5416060 WGS GPS_ZA_2862-sc-2278646 RANDOM 96352830;101492785 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066263/ERR1066263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066263/ERR1066263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066263/17175_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066263/17175_7#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066263/ERR1066263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066263/ERR1066263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066263/17175_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066263/17175_7#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 152333848;8964 ERS708395 ERX1146413 GENOMIC 14427487 677007500 2015-10-13 SC_RUN_17175_7#70 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066263/17175_7#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066263/17175_7#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#70 ERR1066277 SC_EXP_17175_7#84 468 076c85810e76bc3e67fab58a18ac6527;a9470b14496c4211a84d2dbbb2ff3421 1313 a73b9660e4ec09a97f57fbf8d3ca7997;adce53b5c9cfc97ac9935666a2ab9bf3 SAMEA3354070 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066277/ERR1066277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066277/ERR1066277_2.fastq.gz 5319062 WGS GPS_ZA_2876-sc-2278676 RANDOM 93248951;100547143 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066277/ERR1066277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066277/ERR1066277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066277/17175_7#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066277/17175_7#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066277/ERR1066277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066277/ERR1066277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066277/17175_7#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066277/17175_7#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 148839463;8792 ERS708425 ERX1146427 GENOMIC 14427477 664882750 2015-10-13 SC_RUN_17175_7#84 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066277/17175_7#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066277/17175_7#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#84 ERR1066196 SC_EXP_17175_7#3 468 6ed29718a7f69b317cd9435d8749521d;dde3ec18c5f77904e95176313ca7926c 1313 9c1ce1c3ce32a510038ff5e4f4d5af45;4b38e4c0c1fbfe04657c3d8a3ae981d7 SAMEA3353905 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066196/ERR1066196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066196/ERR1066196_2.fastq.gz 6131582 WGS GPS_ZA_2806-sc-2278509 RANDOM 110048948;111666167 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066196/ERR1066196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066196/ERR1066196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066196/17175_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066196/17175_7#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066196/ERR1066196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066196/ERR1066196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066196/17175_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066196/17175_7#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 171550939;10140 ERS708260 ERX1146346 GENOMIC 14427431 766447750 2015-10-13 SC_RUN_17175_7#3 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066196/17175_7#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066196/17175_7#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#3 ERR1066156 SC_EXP_17175_6#54 449 7f588fe6f96b2217d5d2262d4c3a5555;8aad8bf38c313ae4fabe507c4e949796 1313 db42c3c9039aacca17e8f0e9ff735459;858f161bc40e620b83ac21c77e5ab67d SAMEA3353822 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066156/ERR1066156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066156/ERR1066156_2.fastq.gz 5150752 WGS GPS_ZA_carriage_SP1757-sc-2278426 RANDOM 90973946;93116105 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066156/ERR1066156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066156/ERR1066156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066156/17175_6#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066156/17175_6#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066156/ERR1066156_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066156/ERR1066156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066156/17175_6#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066156/17175_6#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 140088090;8536 ERS708177 ERX1146306 GENOMIC 14427570 643844000 2015-10-13 SC_RUN_17175_6#54 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066156/17175_6#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066156/17175_6#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#54 ERR1066127 SC_EXP_17175_6#25 449 500f21364690fbbf2358fe9b24ddd57d;cd4b0b7452f31a4e332c402aa4e0066a 1313 c840a7ff85a15c38a7e0a39d8f87d5fb;2598a18f917a35ab626dbbcce69033da SAMEA3353764 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066127/ERR1066127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066127/ERR1066127_2.fastq.gz 6199272 WGS GPS_ZA_carriage_SP1728-sc-2278368 RANDOM 111282552;115312970 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066127/ERR1066127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066127/ERR1066127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066127/17175_6#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066127/17175_6#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066127/ERR1066127_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066127/ERR1066127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066127/17175_6#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066127/17175_6#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 176607404;10260 ERS708119 ERX1146277 GENOMIC 14427507 774909000 2015-10-13 SC_RUN_17175_6#25 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066127/17175_6#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066127/17175_6#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#25 ERR1066044 SC_EXP_17175_5#32 463 583029002329395f3a531b5ca64961a1;60b4c828a43f85346419bc7b092a5ba1 1313 7e9fb640eec732645db725569aeb9944;87800d508b78dcae89e558ac038453e4 SAMEA3353600 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066044/ERR1066044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066044/ERR1066044_2.fastq.gz 4926346 WGS GPS_ZA_carriage_SP1643-sc-2278202 RANDOM 97061458;100461621 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066044/ERR1066044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066044/ERR1066044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066044/17175_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066044/17175_5#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066044/ERR1066044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066044/ERR1066044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066044/17175_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066044/17175_5#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 149655158;7966 ERS707955 ERX1146194 GENOMIC 14423394 615793250 2015-10-13 SC_RUN_17175_5#32 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066044/17175_5#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066044/17175_5#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#32 ERR1066006 SC_EXP_17175_4#87 467 5d01f3bd7cadf67220271023f148b563;d5b10c04d87ed627dd71afd6eb4d50e9 1313 abb9f38b7d14b8c68cee85375dc7dc05;d49cf838c38f6cae12b07bf257e2c3c7 SAMEA3353518 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066006/ERR1066006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066006/ERR1066006_2.fastq.gz 5122666 WGS GPS_ZA_carriage_SP1512-sc-2278118 RANDOM 87453235;92752355 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066006/ERR1066006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066006/ERR1066006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066006/17175_4#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066006/17175_4#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066006/ERR1066006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066006/ERR1066006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066006/17175_4#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066006/17175_4#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 137957703;8498 ERS707873 ERX1146156 GENOMIC 14436379 640333250 2015-10-13 SC_RUN_17175_4#87 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066006/17175_4#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066006/17175_4#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#87 ERR1065951 SC_EXP_17175_4#32 467 5881a269948de35b8280a6167d072109;6984d11a5d30bd5659ed6e507f8b561e 1313 d6f45eaec8c76ea73fbfc03ff005282c;e48381b39751f99715aa9552798ff033 SAMEA3353412 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065951/ERR1065951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065951/ERR1065951_2.fastq.gz 4926684 WGS GPS_ZA_carriage_SP1457-sc-2278012 RANDOM 87603813;91716078 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065951/ERR1065951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065951/ERR1065951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065951/17175_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065951/17175_4#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065951/ERR1065951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065951/ERR1065951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065951/17175_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065951/17175_4#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 136919680;8160 ERS707767 ERX1146101 GENOMIC 14436384 615835500 2015-10-13 SC_RUN_17175_4#32 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065951/17175_4#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065951/17175_4#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#32 ERR1065849 SC_EXP_17150_6#23 464 6dd17c57e8693e435dbaaf38482539b1;ecf6c83aa8b1558d3c917cfdbb16d87d 1313 6132e11a06bfa0859c2032d8481b1b7b;45fae583741d26bb8b25807a606a2b00 SAMEA3354120 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065849/ERR1065849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065849/ERR1065849_2.fastq.gz 4737144 WGS GPS_ZA_carriage_SP1885-sc-2278728 RANDOM 93758731;89442810 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065849/ERR1065849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065849/ERR1065849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065849/17150_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065849/17150_6#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065849/ERR1065849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065849/ERR1065849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065849/17150_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065849/17150_6#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 141331188;7755 ERS708475 ERX1145999 GENOMIC 14438230 592143000 2015-10-13 SC_RUN_17150_6#23 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065849/17150_6#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065849/17150_6#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#23 ERR1065825 SC_EXP_17150_5#92 460 0c0b6938108d502eac6d7ca7c1100d8a;41c7646bdce845f6caa850e4e4f5072c 1313 908d95b371131b13c1a1cbfdf8fe36a9;397582fb1bb6c568c5713cfe81a62849 SAMEA3353897 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065825/ERR1065825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065825/ERR1065825_2.fastq.gz 5169880 WGS GPS_ZA_carriage_SP1866-sc-2278501 RANDOM 101497344;98045797 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065825/ERR1065825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065825/ERR1065825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065825/17150_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065825/17150_5#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065825/ERR1065825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065825/ERR1065825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065825/17150_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065825/17150_5#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 153975207;8524 ERS708252 ERX1145975 GENOMIC 14423243 646235000 2015-10-13 SC_RUN_17150_5#92 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065825/17150_5#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065825/17150_5#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#92 ERR1065816 SC_EXP_17150_5#83 460 3e172d0e5d605099d939f561833a6217;0f8c19b507629c419af92f4a9f7b2be2 1313 5e88c0f80e913bbd6df6e8374d5a607b;f35bd5fc78756d5d3b1acc3e93200341 SAMEA3353879 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065816/ERR1065816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065816/ERR1065816_2.fastq.gz 5863096 WGS GPS_ZA_carriage_SP1859-sc-2278483 RANDOM 119606624;114773765 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065816/ERR1065816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065816/ERR1065816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065816/17150_5#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065816/17150_5#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065816/ERR1065816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065816/ERR1065816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065816/17150_5#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065816/17150_5#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 182120821;9532 ERS708234 ERX1145966 GENOMIC 14423230 732887000 2015-10-13 SC_RUN_17150_5#83 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065816/17150_5#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065816/17150_5#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#83 ERR1065542 SC_EXP_17138_4#59 472 830aed6e06407ce649348dce01986564;a65f9a2f224b80de89efa9eae30a2622 1313 c2bf494778560985e2ef0ebf331a94c5;e1b2ade423ee63a2494b84d60c050c42 SAMEA3354341 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065542/ERR1065542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065542/ERR1065542_2.fastq.gz 5193012 WGS GPS_ZA_carriage_SP2027-sc-2278994 RANDOM 102648804;100258702 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065542/ERR1065542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065542/ERR1065542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065542/17138_4#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065542/17138_4#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065542/ERR1065542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065542/ERR1065542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065542/17138_4#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065542/17138_4#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 154512151;8604 ERS708696 ERX1145692 GENOMIC 14468584 649126500 2015-10-13 SC_RUN_17138_4#59 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065542/17138_4#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065542/17138_4#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#59 ERR1065574 SC_EXP_17138_4#91 472 1b5e9cb66f201fde4f1cc8f27b6ab86a;f92c0458293a74155737949dc0416dfe 1313 3902a4b60d9e402b2c13eb89a0ecf3da;852403857ea4580082bc70bfbac2abb2 SAMEA3354373 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065574/ERR1065574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065574/ERR1065574_2.fastq.gz 5588348 WGS GPS_ZA_carriage_SP2054-sc-2279075 RANDOM 106313659;108942164 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065574/ERR1065574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065574/ERR1065574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065574/17138_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065574/17138_4#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065574/ERR1065574_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065574/ERR1065574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065574/17138_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065574/17138_4#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165746986;9250 ERS708728 ERX1145724 GENOMIC 14468588 698543500 2015-10-13 SC_RUN_17138_4#91 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065574/17138_4#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065574/17138_4#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#91 ERR1065498 SC_EXP_17138_4#15 472 cc9eb68e8a9632e8e1b0da7b609105f7;0368e50e93e174e9cf38d175b3188bac 1313 94b139bd1d7fd55ae30b58a84ffe1aea;252ea125c022d07b9eac9beb5105bbce SAMEA3354297 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065498/ERR1065498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065498/ERR1065498_2.fastq.gz 5793012 WGS GPS_ZA_carriage_SP1990-sc-2278906 RANDOM 113129857;112728817 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065498/ERR1065498_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065498/ERR1065498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065498/17138_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065498/17138_4#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065498/ERR1065498_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065498/ERR1065498_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065498/17138_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065498/17138_4#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 174103321;9616 ERS708652 ERX1145648 GENOMIC 14468626 724126500 2015-10-13 SC_RUN_17138_4#15 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065498/17138_4#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065498/17138_4#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#15 ERR1065377 SC_EXP_17059_8#81 447 a27910f3004e0f0b3324fc6bf9dcce44;a568d55edfee38e061544ce580496b6b 1313 4404f230cb385b5fcea25af74ee6b4cb;b775a68b2ee9d217f727aca1e0db4bef SAMEA3353515 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065377/ERR1065377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065377/ERR1065377_2.fastq.gz 4464032 WGS GPS_ZA_carriage_SP1409-sc-2278115 RANDOM 76578429;78804100 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065377/ERR1065377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065377/ERR1065377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065377/17059_8#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065377/17059_8#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065377/ERR1065377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065377/ERR1065377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065377/17059_8#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065377/17059_8#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 124684015;7364 ERS707870 ERX1145527 GENOMIC 14406193 558004000 2015-10-13 SC_RUN_17059_8#81 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065377/17059_8#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065377/17059_8#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#81 ERR1065285 SC_EXP_17059_7#83 465 a75c2b5b16dd74eb0b5fa50e91de6134;08bfd5ac6bc0ecc25d36bdf9b423e7f7 1313 8bac45063f48e4266d8d3259a75ffa4e;d8261c7f38c10a4a1c0d1b8039269e3a SAMEA3353329 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065285/ERR1065285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065285/ERR1065285_2.fastq.gz 5231040 WGS GPS_ZA_carriage_SP1317-sc-2277927 RANDOM 93175037;95891611 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065285/ERR1065285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065285/ERR1065285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065285/17059_7#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065285/17059_7#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065285/ERR1065285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065285/ERR1065285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065285/17059_7#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065285/17059_7#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 154678945;8745 ERS707684 ERX1145435 GENOMIC 14406316 653880000 2015-10-13 SC_RUN_17059_7#83 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065285/17059_7#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065285/17059_7#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#83 ERR1065271 SC_EXP_17059_7#67 465 6a807ccae9aec3956ed2f02a0efe850a;ef6c7d01c2c4c3d59fc5ea47b429fe5a 1313 debc7789de26e0747a0e08300f386ac2;6c45c33d081f09205dcb3ead67e2b701 SAMEA3353297 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065271/ERR1065271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065271/ERR1065271_2.fastq.gz 4992194 WGS GPS_ZA_carriage_SP1301-sc-2277895 RANDOM 92747768;93402828 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065271/ERR1065271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065271/ERR1065271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065271/17059_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065271/17059_7#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065271/ERR1065271_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065271/ERR1065271_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065271/17059_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065271/17059_7#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 152228757;8195 ERS707652 ERX1145421 GENOMIC 14406314 624024250 2015-10-13 SC_RUN_17059_7#67 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065271/17059_7#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065271/17059_7#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#67 ERR1065323 SC_EXP_17059_8#27 447 86959bf01644424ee1dbe69666d64b67;bea05db239b947bc18d045c2b3f302ac 1313 c72cabe4a22c5150b92dd7cd767d27a7;6da7d95fc4f0d3ddf3c7f5fdc97df556 SAMEA3353402 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065323/ERR1065323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065323/ERR1065323_2.fastq.gz 5038884 WGS GPS_ZA_carriage_SP1355-sc-2278002 RANDOM 88169428;90826842 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065323/ERR1065323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065323/ERR1065323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065323/17059_8#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065323/17059_8#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065323/ERR1065323_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065323/ERR1065323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065323/17059_8#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065323/17059_8#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 146168351;8343 ERS707757 ERX1145473 GENOMIC 14406210 629860500 2015-10-13 SC_RUN_17059_8#27 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065323/17059_8#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065323/17059_8#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#27 ERR1065134 SC_EXP_17059_6#23 444 5905cc2b1ef825cb35487e64c85c8a4b;b92f1762517644dd50b0d37a5faf0129 1313 d31f9cf4b3afbe22a1e09509cb216181;3814b94cbf0f5ac9c7b0a2f28175a6cb SAMEA3353206 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065134/ERR1065134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065134/ERR1065134_2.fastq.gz 5353192 WGS GPS_ZA_carriage_SP1163-sc-2277804 RANDOM 100741404;103073039 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065134/ERR1065134_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065134/ERR1065134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065134/17059_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065134/17059_6#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065134/ERR1065134_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065134/ERR1065134_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065134/17059_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065134/17059_6#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 168305029;8830 ERS707561 ERX1145284 GENOMIC 14397967 669149000 2015-10-13 SC_RUN_17059_6#23 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065134/17059_6#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065134/17059_6#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#23 ERR997675 SC_EXP_16399_7#54 213 247dda7a82b71767721fa025c31a7790;792ecb0e2209c349242d862be1969a26 1313 6be16be9c3254ea5118b38f124b4a035;5aeae807cffbbf916ff7906459d868be SAMEA3309726 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997675/ERR997675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997675/ERR997675_2.fastq.gz 5538290 WGS GPS_GM_1744-sc-2206540 RANDOM 190799963;197934918 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997675/ERR997675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997675/ERR997675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997675/16399_7#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997675/16399_7#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997675/ERR997675_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997675/ERR997675_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997675/16399_7#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997675/16399_7#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 317292114;8858 ERS686188 ERX1076711 GENOMIC 13843415 553829000 2015-09-04 SC_RUN_16399_7#54 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997675/16399_7#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997675/16399_7#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#54 ERR997630 SC_EXP_16399_7#9 213 bfbb9b70105d938fcc612fe57d5cf1bf;517ae6cffedde43f7fe8e7b7f24a58f1 1313 37a0c173b5c5d273d444b58e04aac3f5;b8e04f38d02b82650f76ccb0269438ec SAMEA3309673 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997630/ERR997630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997630/ERR997630_2.fastq.gz 5527916 WGS GPS_GM_1691-sc-2206476 RANDOM 186696730;193467276 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997630/ERR997630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997630/ERR997630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997630/16399_7#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997630/16399_7#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997630/ERR997630_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997630/ERR997630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997630/16399_7#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997630/16399_7#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 310835115;9014 ERS686135 ERX1076666 GENOMIC 13843350 552791600 2015-09-04 SC_RUN_16399_7#9 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997630/16399_7#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997630/16399_7#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#9 ERR997590 SC_EXP_16399_6#49 220 3ad0c7accecea9f3522933b023aa095c;af1f8410f8c41afb666e3d1f14578020 1313 18665f2a59b2af20c08d259108df1790;2c4bd83f3564869d4e89fc8768c24d4c SAMEA3309628 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997590/ERR997590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997590/ERR997590_2.fastq.gz 6052000 WGS GPS_GM_1647-sc-2206431 RANDOM 200684864;207761208 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997590/ERR997590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997590/ERR997590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997590/16399_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997590/16399_6#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997590/ERR997590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997590/ERR997590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997590/16399_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997590/16399_6#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333451178;9792 ERS686090 ERX1076626 GENOMIC 13835371 605200000 2015-09-04 SC_RUN_16399_6#49 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997590/16399_6#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997590/16399_6#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#49 ERR980242 SC_EXP_16288_7#48 201 84eb7355e68d051f4a27346bb27f234a;9cce3566961fcfee236dc4e6aad70559 1313 1f0e444e0c14f489e3d9a65895fb3a5e;ba6a0b9bafe4f16cf73c7411ba1610b4 SAMEA3232723 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980242/ERR980242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980242/ERR980242_2.fastq.gz 4591684 WGS GPS_NP_1155-sc-2205642 RANDOM 153629586;150411045 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980242/ERR980242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980242/ERR980242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980242/16288_7#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980242/16288_7#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980242/ERR980242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980242/ERR980242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980242/16288_7#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980242/16288_7#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246025348;7442 ERS653934 ERX1057114 GENOMIC 13304092 459168400 2015-08-12 SC_RUN_16288_7#48 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980242/16288_7#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980242/16288_7#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#48 ERR980236 SC_EXP_16288_7#42 201 5d0b65b88dfb7ca792ca2c3371a08ace;0e30c6dda3ecc611aff39c09d8bdd9b6 1313 024253cc73ed3859b538e3169e4cea0c;bc8243173c079b3bc2c2176281067bf4 SAMEA3232717 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980236/ERR980236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980236/ERR980236_2.fastq.gz 4382460 WGS GPS_NP_1072-sc-2205636 RANDOM 146278904;142723294 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980236/ERR980236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980236/ERR980236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980236/16288_7#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980236/16288_7#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980236/ERR980236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980236/ERR980236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980236/16288_7#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980236/16288_7#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232191647;7111 ERS653928 ERX1057108 GENOMIC 13304020 438246000 2015-08-12 SC_RUN_16288_7#42 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980236/16288_7#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980236/16288_7#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#42 ERR980104 SC_EXP_16288_5#66 218 818cd241de45afad0574498cd91e7b84;0ec6eac1d4469d673b449c619b9ba655 1313 c2d048233170e7ed0ddd4235ccad7689;440ad2b3ec0aad7c208560d562ffc63a SAMEA3232575 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980104/ERR980104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980104/ERR980104_2.fastq.gz 5304132 WGS GPS_NP_3129-sc-2205493 RANDOM 180183128;179814855 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980104/ERR980104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980104/ERR980104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980104/16288_5#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980104/16288_5#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980104/ERR980104_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980104/ERR980104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980104/16288_5#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980104/16288_5#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 292969602;8555 ERS653786 ERX1056976 GENOMIC 13296350 530413200 2015-08-12 SC_RUN_16288_5#66 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980104/16288_5#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980104/16288_5#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#66 ERR979998 SC_EXP_16288_4#42 217 9f952d4392da8d3d74972f054654d0f2;a8a2f6dc34c07e96802359b5d32d2077 1313 34b985e09dead06339d76870c91e132a;989af37ea8937efba5e1bda6b717b8fa SAMEA3232468 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979998/ERR979998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979998/ERR979998_2.fastq.gz 5067438 WGS GPS_NP_2449-sc-2205386 RANDOM 178192417;174093499 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979998/ERR979998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979998/ERR979998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979998/16288_4#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979998/16288_4#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979998/ERR979998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979998/ERR979998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979998/16288_4#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979998/16288_4#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285782189;8180 ERS653679 ERX1056870 GENOMIC 13296250 506743800 2015-08-12 SC_RUN_16288_4#42 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979998/16288_4#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979998/16288_4#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#42 ERR925364 SC_EXP_15995_2#154 219 6d6c436e6e15d175ecc89d967bbc2a30;f8a3b698c0c8d613b134d2614ba5190b 1313 c3da744f78c98dc938d47d2d81c68d33;f9d67f6739c4e2b5447fbc8ab7cd1e13 SAMEA3209084 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925364/ERR925364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925364/ERR925364_2.fastq.gz 1602412 WGS GPS_ZA_carriage_SP1065-sc-2205222 RANDOM 50728317;52599417 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925364/ERR925364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925364/ERR925364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925364/15995_2#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925364/15995_2#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925364/ERR925364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925364/ERR925364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925364/15995_2#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925364/15995_2#154.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83770132;2706 ERS640186 ERX1004639 GENOMIC 13301230 160241200 2015-06-23 SC_RUN_15995_2#154 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925364/15995_2#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925364/15995_2#154.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#154 ERR979936 SC_EXP_16288_3#63 234 4a5fb1220aa42147ad2bc3177912de71;3deeeeeab33b8a7fbfc6f10a13d0873b 1313 ea29efb6bd14aa1e2e687931e9d8cc0c;ac2b9bac6ac9afd014494d646c0f206d SAMEA3232406 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979936/ERR979936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979936/ERR979936_2.fastq.gz 3647526 WGS GPS_NP_2222-sc-2205324 RANDOM 120951570;119041841 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979936/ERR979936_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979936/ERR979936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979936/16288_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979936/16288_3#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979936/ERR979936_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979936/ERR979936_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979936/16288_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979936/16288_3#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 193261817;5855 ERS653617 ERX1056808 GENOMIC 13296215 364752600 2015-08-12 SC_RUN_16288_3#63 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979936/16288_3#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979936/16288_3#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#63 ERR925341 SC_EXP_15995_2#131 219 5ffdb52a79df9ad480b740a023f902df;6b999c909e58c652268d892dc011dfab 1313 cb571cf3fc4778b3d803def607208519;6c58f237b8ffe7d5ec8b7c357ea7a1cf SAMEA3209061 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925341/ERR925341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925341/ERR925341_2.fastq.gz 1715442 WGS GPS_ZA_carriage_SP1074-sc-2205199 RANDOM 54097706;56359154 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925341/ERR925341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925341/ERR925341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925341/15995_2#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925341/15995_2#131.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925341/ERR925341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925341/ERR925341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925341/15995_2#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925341/15995_2#131.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89871754;2910 ERS640163 ERX1004616 GENOMIC 13301239 171544200 2015-06-23 SC_RUN_15995_2#131 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925341/15995_2#131.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925341/15995_2#131.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#131 ERR925294 SC_EXP_15995_2#83 219 15f24822e2986a008f1760b12f255fd9;ba999594010d21f48971dc56853545eb 1313 72affc366db207592ae2e45731f079b1;23e118927c5b7c99b4bc84747c30bddb SAMEA3209014 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925294/ERR925294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925294/ERR925294_2.fastq.gz 2204610 WGS GPS_ZA_carriage_SP985-sc-2205151 RANDOM 67750409;70277605 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925294/ERR925294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925294/ERR925294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925294/15995_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925294/15995_2#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925294/ERR925294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925294/ERR925294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925294/15995_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925294/15995_2#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 112674183;3711 ERS640116 ERX1004569 GENOMIC 13301148 220461000 2015-06-23 SC_RUN_15995_2#83 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925294/15995_2#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925294/15995_2#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#83 ERR925231 SC_EXP_15995_2#20 219 7532f96de41c61692754e66c2bba2920;0feb89cbf335334789d2332842aa3952 1313 e11182a2f5d926f55b5e8ce52cde3833;558d2efccbf80f3bfd47741994b52d80 SAMEA3208951 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925231/ERR925231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925231/ERR925231_2.fastq.gz 1563606 WGS GPS_ZA_carriage_SP989-sc-2205088 RANDOM 48888246;50722951 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925231/ERR925231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925231/ERR925231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925231/15995_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925231/15995_2#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925231/ERR925231_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925231/ERR925231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925231/15995_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925231/15995_2#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80977017;2650 ERS640053 ERX1004506 GENOMIC 13301152 156360600 2015-06-23 SC_RUN_15995_2#20 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925231/15995_2#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925231/15995_2#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#20 ERR913203 SC_EXP_15873_2#51 205 da5003dba237341222b0fbcc43a02730;aaf646858eaab43e2ea35584006afb3c 1313 c7e907e00b79c9824ecfeb9d93479e06;8003600f82bc83a1c468719119cd9261 SAMEA3233143 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913203/ERR913203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913203/ERR913203_2.fastq.gz 5829460 WGS GPS_GM_1287-sc-2205899 RANDOM 191351015;199462615 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913203/ERR913203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913203/ERR913203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913203/15873_2#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913203/15873_2#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913203/ERR913203_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913203/ERR913203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913203/15873_2#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913203/15873_2#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 317546830;9331 ERS654336 ERX992327 GENOMIC 13301878 582946000 2015-06-17 SC_RUN_15873_2#51 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913203/15873_2#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913203/15873_2#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#51 ERR913157 SC_EXP_15873_2#5 205 9c320d92a23632883ce7298d8e5aedb4;a783f8a097f1deeb15dc189e9c86d8c7 1313 551c0f98fd50438cc86853f763973a65;6ce33af11775e0f6d59daf22e7ac9851 SAMEA3233090 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913157/ERR913157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913157/ERR913157_2.fastq.gz 8074146 WGS GPS_GM_1234-sc-2205846 RANDOM 263510946;275424283 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913157/ERR913157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913157/ERR913157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913157/15873_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913157/15873_2#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913157/ERR913157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913157/ERR913157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913157/15873_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913157/15873_2#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 445792047;12741 ERS654283 ERX992281 GENOMIC 13301896 807414600 2015-06-17 SC_RUN_15873_2#5 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913157/15873_2#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913157/15873_2#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#5 ERR909181 SC_EXP_15841_4#47 228 7eac0fdd3f615aec02dee16c89b82b56;90a66ea18c5c5d5c4c677b899f12520b 1313 736be4c452f63be488f624d2df4c19d6;b7ae2466893811e9ee482917bcd834af SAMEA3208788 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909181/ERR909181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909181/ERR909181_2.fastq.gz 5023308 WGS GPS_ZA_carriage_SP838-sc-2204923 RANDOM 157504463;163074136 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909181/ERR909181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909181/ERR909181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909181/15841_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909181/15841_4#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909181/ERR909181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909181/ERR909181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909181/15841_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909181/15841_4#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258692073;8079 ERS639890 ERX988436 GENOMIC 13267982 502330800 2015-06-09 SC_RUN_15841_4#47 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909181/15841_4#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909181/15841_4#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#47 ERR869920 SC_EXP_15531_3#12 199 ac14a2b477a5ce68d46f9ae2cca99c6a;d5557a45c4a1b1489ed8a4fb8216b8f7 1313 a428996c2b8b6af9c95e71d137cb15d7;7ec19945a32cde7ceb475b99bf89f1e1 SAMEA3171343 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869920/ERR869920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869920/ERR869920_2.fastq.gz 4404698 WGS GPS_MW_BDU10Y-sc-2139908 RANDOM 165987601;158353515 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869920/ERR869920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869920/ERR869920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869920/15531_3#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869920/15531_3#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869920/ERR869920_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869920/ERR869920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869920/15531_3#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869920/15531_3#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269319240;7184 ERS625734 ERX949521 GENOMIC 12862565 440469800 2015-05-06 SC_RUN_15531_3#12 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869920/15531_3#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869920/15531_3#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_3#12 ERR870248 SC_EXP_15531_6#56 212 7b9b9abb7821d10d373dab1aa90a7967;0baafa7ffbd40f61d01b1839d31f1b84 1313 62845eb64efdd8041171eec724787107;c7281ffd2ba6c66549146dc17566e11b SAMEA3172999 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870248/ERR870248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870248/ERR870248_2.fastq.gz 4749834 WGS GPS_GM_1143-sc-2190558 RANDOM 182323656;172120984 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870248/ERR870248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870248/ERR870248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870248/15531_6#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870248/15531_6#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870248/ERR870248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870248/ERR870248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870248/15531_6#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870248/15531_6#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294396695;7742 ERS627242 ERX949849 GENOMIC 12870106 474983400 2015-05-06 SC_RUN_15531_6#56 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870248/15531_6#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870248/15531_6#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#56 ERR862468 SC_EXP_15378_4#20 205 6e39fd3c783378ffcffd7b1f05bf3aa8;f875bffde2cc42fd36c6715773abd6e5 1313 a9b83789b0e958d87db7aba6ff2b4fd7;0cff343ad90959342af2a2d9f2b9f347 SAMEA3171152 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862468/ERR862468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862468/ERR862468_2.fastq.gz 3476266 WGS GPS_MW_958-sc-2139715 RANDOM 117205291;119497543 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862468/ERR862468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862468/ERR862468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862468/15378_4#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862468/15378_4#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862468/ERR862468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862468/ERR862468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862468/15378_4#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862468/15378_4#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 192653213;5566 ERS625543 ERX942118 GENOMIC 12826903 347626600 2015-04-21 SC_RUN_15378_4#20 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862468/15378_4#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862468/15378_4#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#20 ERR870317 SC_EXP_15531_7#31 250 c4ec944dabfc42069c7518f0b819d3a0;2451a0e7faa06b0975c8b4a82950c8b1 1313 aa3b4d0e2bd6aee52c66a06d5832e51d;82a7a912dba1fd45f8e30fbd57570bdc SAMEA3173069 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870317/ERR870317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870317/ERR870317_2.fastq.gz 3138332 WGS GPS_GM_1213-sc-2190630 RANDOM 105348669;97091056 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870317/ERR870317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870317/ERR870317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870317/15531_7#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870317/15531_7#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870317/ERR870317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870317/ERR870317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870317/15531_7#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870317/15531_7#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 162807423;5053 ERS627312 ERX949918 GENOMIC 12888727 313833200 2015-05-06 SC_RUN_15531_7#31 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870317/15531_7#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870317/15531_7#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_7#31 ERR913129 SC_EXP_15873_1#72 206 d090ba86b268dead1334193906e4f899;a50faf2ef8cfffef7ce17f772b6e2cb1 1313 e3f2d3ab9851e3786a90accaa7bafe21;e148ad748df559b59a74ef22b5a312c5 SAMEA3207172 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913129/ERR913129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913129/ERR913129_2.fastq.gz 4687146 WGS GPS_ZA_carriage_SP568-sc-2192110 RANDOM 145832534;152507631 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913129/ERR913129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913129/ERR913129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913129/15873_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913129/15873_1#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913129/ERR913129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913129/ERR913129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913129/15873_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913129/15873_1#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242487466;7626 ERS639182 ERX992253 GENOMIC 13227626 468714600 2015-06-17 SC_RUN_15873_1#72 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913129/15873_1#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913129/15873_1#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#72 ERR913541 SC_EXP_15874_1#64 217 1bea0dd5ff8bf0b09958abfe951d52fc;e4268b35284e4944660316badf68bccd 1313 a730b17c3265cb4a480fdbaab6369e09;d6d741393e0aae4586f6375beaf78c87 SAMEA3207078 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913541/ERR913541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913541/ERR913541_2.fastq.gz 5571292 WGS GPS_ZA_carriage_SP472-sc-2192015 RANDOM 161369974;171584706 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913541/ERR913541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913541/ERR913541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913541/15874_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913541/15874_1#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913541/ERR913541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913541/ERR913541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913541/15874_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913541/15874_1#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267333960;8960 ERS639088 ERX992665 GENOMIC 13242140 557129200 2015-06-17 SC_RUN_15874_1#64 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913541/15874_1#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913541/15874_1#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#64 ERR913489 SC_EXP_15874_1#7 217 5d10b18005acf01da2c9d0033cb6818a;0814b88df83b30aab55a3a80e9237a34 1313 fed47c9859c417767ccb2665c10b22ce;e1d892f589cde3016a1c1dc36e11cd72 SAMEA3207012 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913489/ERR913489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913489/ERR913489_2.fastq.gz 5041042 WGS GPS_ZA_carriage_SP453-sc-2191949 RANDOM 148754692;158247186 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913489/ERR913489_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913489/ERR913489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913489/15874_1#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913489/15874_1#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913489/ERR913489_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913489/ERR913489_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913489/15874_1#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913489/15874_1#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247964558;8007 ERS639022 ERX992613 GENOMIC 13242121 504104200 2015-06-17 SC_RUN_15874_1#7 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913489/15874_1#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913489/15874_1#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#7 ERR908924 SC_EXP_15841_1#75 206 0e62513bde68e5c61d163cf8473cf80b;509529ffbf1bffb24eb88c23c8a10f95 1313 0d21aa804c53ce528fd6b9947a571b77;e8ef8c79bd94a963b03c5fd78211a57b SAMEA3206860 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908924/ERR908924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908924/ERR908924_2.fastq.gz 4970048 WGS GPS_ZA_carriage_SP224-sc-2191794 RANDOM 153135618;158541197 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908924/ERR908924_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908924/ERR908924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908924/15841_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908924/15841_1#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908924/ERR908924_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908924/ERR908924_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908924/15841_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908924/15841_1#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251873532;8036 ERS638870 ERX988179 GENOMIC 13227470 497004800 2015-06-09 SC_RUN_15841_1#75 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908924/15841_1#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908924/15841_1#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#75 ERR908937 SC_EXP_15841_1#88 206 f210073c1e5a033c7edff5db0edf8bef;85627f7ca5b83cafc84cc1a24b04ad96 1313 74a071d42d6f27d8e18da21546fc69af;8522c08ee887ebef34b1ba3d176053a3 SAMEA3206876 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908937/ERR908937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908937/ERR908937_2.fastq.gz 5665394 WGS GPS_ZA_carriage_SP285-sc-2191810 RANDOM 180513248;187916844 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908937/ERR908937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908937/ERR908937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908937/15841_1#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908937/15841_1#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908937/ERR908937_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908937/ERR908937_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908937/15841_1#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908937/15841_1#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297347595;8936 ERS638886 ERX988192 GENOMIC 13227531 566539400 2015-06-09 SC_RUN_15841_1#88 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908937/15841_1#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908937/15841_1#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#88 ERR909106 SC_EXP_15841_3#67 225 1c188761f271bcf5271569445aaf7eb3;bd69d3556d2822b2722d9c02b9da0daf 1313 3e6adf3dabb797c459f2fc5da2bf2d36;b72a79a6b9fb98edbd94142adaad0e02 SAMEA3208713 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909106/ERR909106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909106/ERR909106_2.fastq.gz 4987322 WGS GPS_ZA_carriage_SP698-sc-2204847 RANDOM 151065996;156097560 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909106/ERR909106_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909106/ERR909106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909106/15841_3#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909106/15841_3#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909106/ERR909106_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909106/ERR909106_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909106/15841_3#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909106/15841_3#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247713860;8082 ERS639815 ERX988361 GENOMIC 13267820 498732200 2015-06-09 SC_RUN_15841_3#67 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909106/15841_3#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909106/15841_3#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#67 ERR909024 SC_EXP_15841_2#80 229 a20b5b01eab777b8c6e44e133305dde7;4dc97bcb03ae6582fd648c63075e1425 1313 5da25eb5ef1a3b9f9dfca4343bc9e769;7e77d1f9382cba54841c66c4849609a6 SAMEA3207276 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909024/ERR909024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909024/ERR909024_2.fastq.gz 5446254 WGS GPS_ZA_carriage_SP664-sc-2192214 RANDOM 176299317;182439625 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909024/ERR909024_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909024/ERR909024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909024/15841_2#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909024/15841_2#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909024/ERR909024_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909024/ERR909024_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909024/15841_2#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909024/15841_2#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 290273969;8663 ERS639286 ERX988279 GENOMIC 13265173 544625400 2015-06-09 SC_RUN_15841_2#80 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909024/15841_2#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909024/15841_2#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#80 ERR884329 SC_EXP_15682_1#31 218 21e8ae8910cd83406301061f0a858c8c;e8fb1e69aed1d54cb45131bff9e8939d 1313 d6a5fa676969a9d8420642010af7ac01;ab9ba06ec42bcabbf4339fc1f1232164 SAMEA3176012 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884329/ERR884329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884329/ERR884329_2.fastq.gz 4563312 WGS GPS_PL_4056_09-sc-2191069 RANDOM 147822662;152426567 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884329/ERR884329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884329/ERR884329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884329/15682_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884329/15682_1#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884329/ERR884329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884329/ERR884329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884329/15682_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884329/15682_1#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243308393;7422 ERS628960 ERX963732 GENOMIC 13029579 456331200 2015-05-21 SC_RUN_15682_1#31 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884329/15682_1#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884329/15682_1#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#31 ERR909230 SC_EXP_15841_5#1 223 af6588dd6b852e40f152fc89feb7fcec;f32688ad097f52223e45d22bc1ab057a 1313 eb1954ee938b2b95e90eaf818ad4a8ee;8dbf65f46bb53d4d8233f23d935ffd55 SAMEA3206911 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909230/ERR909230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909230/ERR909230_2.fastq.gz 5331908 WGS GPS_ZA_carriage_SP286-sc-2191847 RANDOM 165969446;172142561 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909230/ERR909230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909230/ERR909230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909230/15841_5#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909230/15841_5#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909230/ERR909230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909230/ERR909230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909230/15841_5#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909230/15841_5#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274474958;8634 ERS638921 ERX988485 GENOMIC 13275923 533190800 2015-06-09 SC_RUN_15841_5#1 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909230/15841_5#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909230/15841_5#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#1 ERR876662 SC_EXP_15608_4#44 214 31c5b0e61b330f4c82cadc3034379d4b;d97919a834262d8077619c56e99d5e3e 1313 1fa29857fcb0633cbd24d63549f43638;abe5ef521eb1dd95e56282622c11a72a SAMEA3175890 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876662/ERR876662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876662/ERR876662_2.fastq.gz 5630170 WGS GPS_US_PATH6503-sc-2190932 RANDOM 177259498;183262117 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876662/ERR876662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876662/ERR876662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876662/15608_4#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876662/15608_4#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876662/ERR876662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876662/ERR876662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876662/15608_4#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876662/15608_4#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 292125433;9087 ERS628838 ERX956225 GENOMIC 13029957 563017000 2015-05-12 SC_RUN_15608_4#44 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876662/15608_4#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876662/15608_4#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_4#44 ERR876788 SC_EXP_15608_5#91 212 f435eee7a745b3d10343631807a1a46b;e3298fa45c19d1c5884b5132bb6c384f 1313 b695f27e3efe645b2763e7742496ae5c;3a6517711d33d3b5e4cdb8a4574573e4 SAMEA3176111 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876788/ERR876788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876788/ERR876788_2.fastq.gz 5706550 WGS GPS_PL_1986_08-sc-2191169 RANDOM 182538459;187600759 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876788/ERR876788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876788/ERR876788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876788/15608_5#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876788/15608_5#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876788/ERR876788_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876788/ERR876788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876788/15608_5#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876788/15608_5#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300342654;9418 ERS629059 ERX956351 GENOMIC 13030048 570655000 2015-05-12 SC_RUN_15608_5#91 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876788/15608_5#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876788/15608_5#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_5#91 ERR909014 SC_EXP_15841_2#70 229 c3431065fe6907a8a1fb700704197d22;8026870b5002c2ce104087d4a51a985e 1313 2f46375ac237852ab607bb2072faa29b;9b33fbbccf1c739a32fa13bfab20d7fc SAMEA3207266 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909014/ERR909014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909014/ERR909014_2.fastq.gz 5460224 WGS GPS_ZA_carriage_SP639-sc-2192204 RANDOM 173296990;179303866 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909014/ERR909014_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909014/ERR909014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909014/15841_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909014/15841_2#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909014/ERR909014_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909014/ERR909014_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909014/15841_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909014/15841_2#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286279897;8862 ERS639276 ERX988269 GENOMIC 13265148 546022400 2015-06-09 SC_RUN_15841_2#70 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909014/15841_2#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909014/15841_2#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#70 ERR870276 SC_EXP_15531_6#84 212 dff85863ee18773c398b80434f60ccb9;fd932452a3c91a2a9248247a86080fd9 1313 c44b897b6a5fab60fd4455e1a6e14c5b;08d87c4486d78bf0637e14247952b327 SAMEA3173027 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870276/ERR870276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870276/ERR870276_2.fastq.gz 4703984 WGS GPS_GM_1171-sc-2190586 RANDOM 182480036;172627332 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870276/ERR870276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870276/ERR870276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870276/15531_6#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870276/15531_6#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870276/ERR870276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870276/ERR870276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870276/15531_6#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870276/15531_6#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295660079;7467 ERS627270 ERX949877 GENOMIC 12870062 470398400 2015-05-06 SC_RUN_15531_6#84 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870276/15531_6#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870276/15531_6#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#84 ERR870196 SC_EXP_15531_6#4 212 e35eeb3c6682e4e276f3b4bc118a68fc;721e359060ff2cd723e1981eded21617 1313 a0b6a4f407d80a2902de40d05de9f5ef;97c95b62ce26a155d596224ead83ed55 SAMEA3172938 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870196/ERR870196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870196/ERR870196_2.fastq.gz 4087338 WGS GPS_GM_1082-sc-2190496 RANDOM 155542022;147320322 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870196/ERR870196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870196/ERR870196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870196/15531_6#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870196/15531_6#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870196/ERR870196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870196/ERR870196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870196/15531_6#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870196/15531_6#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 250980675;6646 ERS627181 ERX949797 GENOMIC 12870052 408733800 2015-05-06 SC_RUN_15531_6#4 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870196/15531_6#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870196/15531_6#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#4 ERR870074 SC_EXP_15531_4#72 207 1a1a70f70dcbfe09b8ac8a84f48b8834;e4a0c5c33406e6cb7719c8e31ea41dcd 1313 ac20017dd1d281642f3b8d10abb2a2d0;60efcee14fa0ee75cafbeeba9f8c0e32 SAMEA3172826 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870074/ERR870074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870074/ERR870074_2.fastq.gz 4008552 WGS GPS_GM_0950-sc-2190383 RANDOM 156062009;148661277 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870074/ERR870074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870074/ERR870074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870074/15531_4#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870074/15531_4#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870074/ERR870074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870074/ERR870074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870074/15531_4#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870074/15531_4#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 252626422;6469 ERS627069 ERX949675 GENOMIC 12882873 400855200 2015-05-06 SC_RUN_15531_4#72 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870074/15531_4#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870074/15531_4#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#72 ERR870303 SC_EXP_15531_7#17 250 85c8c45b7e07322444f51a76963059f5;9c045ed7a2e2e5db7f3d417d4fd78061 1313 8e49e9489883b26de7f1088eaa8af334;91449e7d13f88b0779a94bcb8b324869 SAMEA3173055 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870303/ERR870303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870303/ERR870303_2.fastq.gz 3219588 WGS GPS_GM_1199-sc-2190615 RANDOM 109308717;101114906 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870303/ERR870303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870303/ERR870303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870303/15531_7#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870303/15531_7#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870303/ERR870303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870303/ERR870303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870303/15531_7#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870303/15531_7#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 168913594;5135 ERS627298 ERX949904 GENOMIC 12888654 321958800 2015-05-06 SC_RUN_15531_7#17 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870303/15531_7#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870303/15531_7#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_7#17 ERR870101 SC_EXP_15531_5#4 214 35c7a7e856004595e939f628052d3d80;59c15ab57dec6dbe36a494d9941d89cc 1313 6fa594b184a57b4a9429abf3fcca7e40;176333669a0a7f91c1f5e31063378e2f SAMEA3172874 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870101/ERR870101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870101/ERR870101_2.fastq.gz 5400098 WGS GPS_GM_0983-sc-2190431 RANDOM 206252014;196470055 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870101/ERR870101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870101/ERR870101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870101/15531_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870101/15531_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870101/ERR870101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870101/ERR870101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870101/15531_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870101/15531_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 335606723;8816 ERS627117 ERX949702 GENOMIC 12870922 540009800 2015-05-06 SC_RUN_15531_5#4 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870101/15531_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870101/15531_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#4 ERR774547 SC_EXP_14936_4#74 220 cb7e409909e60a98da79b1b9bb0456b8;4134b79edde0f4b2034f4c39b4af9f1c 1313 4aec094655672c8dbffa4a4de09007f7;c65d16a6ffe1f60315c9124808ffbee6 SAMEA2814379 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774547/ERR774547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774547/ERR774547_2.fastq.gz 3899960 WGS GPS_ZA_2591-sc-2138173 RANDOM 142948889;143718802 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774547/ERR774547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774547/ERR774547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774547/14936_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774547/14936_4#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774547/ERR774547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774547/ERR774547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774547/14936_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774547/14936_4#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240003203;6325 ERS566747 ERX717426 GENOMIC 12347939 389996000 2015-03-03 SC_RUN_14936_4#74 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774547/14936_4#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774547/14936_4#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#74 ERR845800 SC_EXP_15277_3#71 250 ab1d1b50bd06328819764d67d79c6821;624c84559ca0d6d77add7058753b07b3 1313 120ea824e840a0fd21d11c02fbbab659;c805e88014ca7e13a0baceb93183e331 SAMEA2783642 2015-04-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845800/ERR845800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845800/ERR845800_2.fastq.gz 4694470 WGS GPS_MW_D28303_R1-sc-2022137 RANDOM 149543935;153066812 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845800/ERR845800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845800/ERR845800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845800/15277_3#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845800/15277_3#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845800/ERR845800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845800/ERR845800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845800/15277_3#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845800/15277_3#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245789393;7511 ERS553387 ERX926711 GENOMIC 12665817 469447000 2015-04-08 SC_RUN_15277_3#71 fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845800/15277_3#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845800/15277_3#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA428759 15277_3#71 ERR774530 SC_EXP_14936_4#57 220 24ed423c87838ebf34f8702da0546de2;a07533b9d087b0a8dd66bec1969022fb 1313 722ed35bf29786e86fb61a1b41b9dc37;27c91a43e4933196c258c26820eea6fd SAMEA2814362 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774530/ERR774530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774530/ERR774530_2.fastq.gz 4397778 WGS GPS_ZA_2574-sc-2138156 RANDOM 161149314;161450440 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774530/ERR774530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774530/ERR774530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774530/14936_4#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774530/14936_4#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774530/ERR774530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774530/ERR774530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774530/14936_4#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774530/14936_4#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266861047;7052 ERS566730 ERX717409 GENOMIC 12347925 439777800 2015-03-03 SC_RUN_14936_4#57 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774530/14936_4#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774530/14936_4#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#57 ERR774119 SC_EXP_14913_5#22 225 8a1ca30a375d6e16fe6064351e473799;9f304b93e8915597a1c2f2176362dc1e 1313 71460d36c5808464f510694136fe3767;f66e94d4535adcbcd9586918d3716bd8 SAMEA2814422 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774119/ERR774119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774119/ERR774119_2.fastq.gz 4666708 WGS GPS_ZA_2634-sc-2138217 RANDOM 152927897;159930212 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774119/ERR774119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774119/ERR774119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774119/14913_5#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774119/14913_5#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774119/ERR774119_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774119/ERR774119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774119/14913_5#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774119/14913_5#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255991389;7617 ERS566790 ERX716998 GENOMIC 12403429 466670800 2015-03-03 SC_RUN_14913_5#22 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774119/14913_5#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774119/14913_5#22.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#22 ERR774527 SC_EXP_14936_4#54 220 7116e09b2c5772fc4474bd2e324698f0;e49b21987c0072ddae8e136a1233708f 1313 d5ae2c1049652926766a87e4d7e3825c;fe1ad9441d85783671f4c22189e7f121 SAMEA2814359 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774527/ERR774527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774527/ERR774527_2.fastq.gz 4428698 WGS GPS_ZA_2571-sc-2138153 RANDOM 161233239;162765434 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774527/ERR774527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774527/ERR774527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774527/14936_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774527/14936_4#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774527/ERR774527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774527/ERR774527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774527/14936_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774527/14936_4#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269141433;7214 ERS566727 ERX717406 GENOMIC 12347984 442869800 2015-03-03 SC_RUN_14936_4#54 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774527/14936_4#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774527/14936_4#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#54 ERR774309 SC_EXP_14913_7#25 228 bf8b8034c4df775f64cf1ea056b64c5a;313f71779f74a8e931a313b0e08a86b9 1313 8f249975471f63baa4fe09e88b39d94a;d85b01be8126b8c2c7f3a54cb454c24d SAMEA2814235 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774309/ERR774309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774309/ERR774309_2.fastq.gz 4473936 WGS GPS_ZA_2447-sc-2022733 RANDOM 147732575;154379970 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774309/ERR774309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774309/ERR774309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774309/14913_7#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774309/14913_7#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774309/ERR774309_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774309/ERR774309_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774309/14913_7#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774309/14913_7#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246677624;7254 ERS566603 ERX717188 GENOMIC 12357924 447393600 2015-03-03 SC_RUN_14913_7#25 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774309/14913_7#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774309/14913_7#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#25 ERR773917 SC_EXP_14913_3#8 225 5b95b6da8a609d72304991a13e37b143;1df34d326aa01424d1b6798d17d55d58 1313 da9dd6255e928d7dae564c388519bf4c;3bff7a6f919ca611e44812c9f4e3eda0 SAMEA2813933 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773917/ERR773917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773917/ERR773917_2.fastq.gz 5527944 WGS GPS_ZA_2145-sc-2022417 RANDOM 184089930;189231900 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773917/ERR773917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773917/ERR773917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773917/14913_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773917/14913_3#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773917/ERR773917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773917/ERR773917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773917/14913_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773917/14913_3#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 306068197;8994 ERS566301 ERX716796 GENOMIC 12345994 552794400 2015-03-03 SC_RUN_14913_3#8 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773917/14913_3#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773917/14913_3#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#8 ERR774279 SC_EXP_14913_6#90 223 a9ed1d7ca8e5b7cd607fa1953da690ab;6e99cea978a77dae40115aeda5773f72 1313 f762e0f0d7b85b38cb9d45b9ffab629b;c42c32bca29bd7ad97ed17bdfddc58c7 SAMEA2814585 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774279/ERR774279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774279/ERR774279_2.fastq.gz 3583008 WGS GPS_ZA_2778-sc-2138381 RANDOM 111827397;117624961 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774279/ERR774279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774279/ERR774279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774279/14913_6#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774279/14913_6#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774279/ERR774279_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774279/ERR774279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774279/14913_6#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774279/14913_6#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 184571445;5811 ERS566953 ERX717158 GENOMIC 12334819 358300800 2015-03-03 SC_RUN_14913_6#90 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774279/14913_6#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774279/14913_6#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#90 ERR774039 SC_EXP_14913_4#37 230 cf599470fae643ea26256a7276f5f20d;9a403939d103382304b4f0312c942a5f 1313 99d1e808461187daaf29c75cfd08e612;779db9b97f28b14a01986a467852c66c SAMEA2814093 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774039/ERR774039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774039/ERR774039_2.fastq.gz 4824936 WGS GPS_ZA_2364-sc-2022577 RANDOM 162550260;170593586 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774039/ERR774039_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774039/ERR774039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774039/14913_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774039/14913_4#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774039/ERR774039_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774039/ERR774039_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774039/14913_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774039/14913_4#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272041449;7687 ERS566461 ERX716918 GENOMIC 12396033 482493600 2015-03-03 SC_RUN_14913_4#37 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774039/14913_4#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774039/14913_4#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#37 ERR774511 SC_EXP_14936_4#38 220 581490a9d1abeb7d1e1b76a02bf74ec9;facbdc43c5984ea90a4ae7a3e5e0648c 1313 28a2443b9ed1519ec53c65f7c86cd0c0;d26bd5d102ace676c561856bbb7bb4c4 SAMEA2814343 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774511/ERR774511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774511/ERR774511_2.fastq.gz 4717592 WGS GPS_ZA_2555-sc-2138137 RANDOM 171604715;172787830 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774511/ERR774511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774511/ERR774511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774511/14936_4#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774511/14936_4#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774511/ERR774511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774511/ERR774511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774511/14936_4#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774511/14936_4#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287603449;7684 ERS566711 ERX717390 GENOMIC 12347982 471759200 2015-03-03 SC_RUN_14936_4#38 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774511/14936_4#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774511/14936_4#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#38 ERR774030 SC_EXP_14913_4#28 230 0dd35c29b86964dac3cb3b87d971ab39;11c53eb62017b6ee581cba29329cd2ef 1313 e1a9ef1babcda845cb4172c4c76ac0a8;73c74aaa1745ffdab9c09b5ac59519c0 SAMEA2814064 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774030/ERR774030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774030/ERR774030_2.fastq.gz 5063414 WGS GPS_ZA_2355-sc-2022548 RANDOM 166418200;174722600 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774030/ERR774030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774030/ERR774030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774030/14913_4#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774030/14913_4#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774030/ERR774030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774030/ERR774030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774030/14913_4#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774030/14913_4#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279319076;8208 ERS566432 ERX716909 GENOMIC 12396020 506341400 2015-03-03 SC_RUN_14913_4#28 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774030/14913_4#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774030/14913_4#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#28 ERR774028 SC_EXP_14913_4#26 230 e5931ad5fd63d99343f949380c171e7f;bbe687798292738a72195c39e834cb0b 1313 30387a2dfc22bb021b6416a8ddd8563a;cefaf02d8da7c7ac878de719fb4facf9 SAMEA2814057 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774028/ERR774028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774028/ERR774028_2.fastq.gz 4943284 WGS GPS_ZA_2353-sc-2022541 RANDOM 163113734;170844220 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774028/ERR774028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774028/ERR774028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774028/14913_4#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774028/14913_4#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774028/ERR774028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774028/ERR774028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774028/14913_4#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774028/14913_4#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272941795;8025 ERS566425 ERX716907 GENOMIC 12395996 494328400 2015-03-03 SC_RUN_14913_4#26 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774028/14913_4#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774028/14913_4#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#26 ERR774372 SC_EXP_14913_7#88 228 36c209a9a9e6a212e59c22cd81f68cd1;498fa6a4dd82f534590ffd5500062840 1313 374f152d36fe43ca9f6bdbd5fb0d5c92;78cc4bbe3b6c3bdb4be1c9bd18063591 SAMEA2814298 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774372/ERR774372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774372/ERR774372_2.fastq.gz 5316486 WGS GPS_ZA_2510-sc-2022848 RANDOM 178061835;187028082 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774372/ERR774372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774372/ERR774372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774372/14913_7#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774372/14913_7#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774372/ERR774372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774372/ERR774372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774372/14913_7#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774372/14913_7#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298202197;8493 ERS566666 ERX717251 GENOMIC 12358015 531648600 2015-03-03 SC_RUN_14913_7#88 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774372/14913_7#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774372/14913_7#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#88 ERR774157 SC_EXP_14913_5#61 225 b3b62a4e8cc096c2dab96622efba9e26;bb19ce0642123c0005df26107b70c865 1313 6e39042c6e9a61c43b0531dda6de8c7a;088700e0d2963cd9374ec03b56ebf601 SAMEA2814461 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774157/ERR774157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774157/ERR774157_2.fastq.gz 5119976 WGS GPS_ZA_2673-sc-2138256 RANDOM 169173384;177474098 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774157/ERR774157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774157/ERR774157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774157/14913_5#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774157/14913_5#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774157/ERR774157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774157/ERR774157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774157/14913_5#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774157/14913_5#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283419683;8233 ERS566829 ERX717036 GENOMIC 12403422 511997600 2015-03-03 SC_RUN_14913_5#61 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774157/14913_5#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774157/14913_5#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#61 ERR774167 SC_EXP_14913_5#73 225 0d7f0404df727e7d9a55d382bd19af38;1223cf3aa4b36a65c2383d5ec9f35452 1313 cc1d0b97e21d4cac6982be856cc27a81;ed152c5108cc1f983e5501a18451eb59 SAMEA2814473 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774167/ERR774167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774167/ERR774167_2.fastq.gz 5891100 WGS GPS_ZA_2685-sc-2138268 RANDOM 195932740;204213192 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774167/ERR774167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774167/ERR774167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774167/14913_5#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774167/14913_5#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774167/ERR774167_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774167/ERR774167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774167/14913_5#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774167/14913_5#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 327018837;9346 ERS566841 ERX717046 GENOMIC 12403376 589110000 2015-03-03 SC_RUN_14913_5#73 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774167/14913_5#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774167/14913_5#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#73 ERR742449 SC_EXP_14673_2#32 220 1d24028170b129a4ce4b72392a409992;a314eb2e311750b9d4f15231e74d199d 1313 32923e7f5387905ee00e730f7457ee41;e85b5762c15eee84390bf94a4bb5ec99 SAMEA2796535 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742449/ERR742449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742449/ERR742449_2.fastq.gz 5638020 WGS GPS_US_4214_05-sc-2138515 RANDOM 174315809;180053344 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742449/ERR742449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742449/ERR742449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742449/14673_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742449/14673_2#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742449/ERR742449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742449/ERR742449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742449/14673_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742449/14673_2#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286435188;9171 ERS558146 ERX686132 GENOMIC 12061862 563802000 2015-01-27 SC_RUN_14673_2#32 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742449/14673_2#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742449/14673_2#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#32 ERR730320 SC_EXP_14520_5#87 224 a2038330d218d9584329c2016b6d091b;f2e1c5a887020cf26d03c4171cc5150d 1313 ff700364cde2a9a06c67b23d585744e9;ac97d1d4de64e11b3766d92bbf69f019 SAMEA2696522 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730320/ERR730320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730320/ERR730320_2.fastq.gz 4569990 WGS GPS_GM_0700-sc-2021977 RANDOM 167640984;170817165 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730320/ERR730320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730320/ERR730320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730320/14520_5#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730320/14520_5#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730320/ERR730320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730320/ERR730320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730320/14520_5#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730320/14520_5#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278521936;7503 ERS525101 ERX674266 GENOMIC 11982922 456999000 2015-01-14 SC_RUN_14520_5#87 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730320/14520_5#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730320/14520_5#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#87 ERR730770 SC_EXP_14566_5#10 233 429dd2a8f96b0028186c3ba04295978f;b5b2bbe7a6f68fc3bd30b895a2de140a 1313 879519b778ddf659b4710c89a4d7008d;1517c9b72f613acc3488d68f838b0b5c SAMEA2658615 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730770/ERR730770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730770/ERR730770_2.fastq.gz 3808474 WGS GPS_ZA_1767-sc-2021223 RANDOM 108973511;111042033 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730770/ERR730770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730770/ERR730770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730770/14566_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730770/14566_5#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730770/ERR730770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730770/ERR730770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730770/14566_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730770/14566_5#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177378900;6249 ERS508643 ERX674716 GENOMIC 11838938 380847400 2015-01-14 SC_RUN_14566_5#10 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730770/14566_5#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730770/14566_5#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#10 ERR730733 SC_EXP_14566_4#68 236 4f104a996b69c9bd90c572290941d218;2f42b13e295049e7afb76472e1ee741f 1313 11ba9726ecc7dc1a20c553649cf85376;14a0b39a63d17f9d2246daa369591d9d SAMEA2658692 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730733/ERR730733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730733/ERR730733_2.fastq.gz 4741546 WGS GPS_ZA_1635-sc-2021300 RANDOM 141849305;147176322 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730733/ERR730733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730733/ERR730733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730733/14566_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730733/14566_4#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730733/ERR730733_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730733/ERR730733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730733/14566_4#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730733/14566_4#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 237800217;7869 ERS508720 ERX674679 GENOMIC 11911781 474154600 2015-01-14 SC_RUN_14566_4#68 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730733/14566_4#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730733/14566_4#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#68 ERR730922 SC_EXP_14566_6#67 237 e1448d95a9a8436792e6c598ffc8f733;2759cc9358c969fe2088cb78592f0794 1313 44598513f3244e1e7a81e4b998fdab3c;0c3e1d49373c443406c0f1ab6a7f2c76 SAMEA2659031 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730922/ERR730922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730922/ERR730922_2.fastq.gz 4665050 WGS GPS_ZA_2014-sc-2021669 RANDOM 140114815;145557915 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730922/ERR730922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730922/ERR730922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730922/14566_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730922/14566_6#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730922/ERR730922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730922/ERR730922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730922/14566_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730922/14566_6#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234497049;7689 ERS509059 ERX674868 GENOMIC 11887132 466505000 2015-01-14 SC_RUN_14566_6#67 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730922/14566_6#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730922/14566_6#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#67 ERR730878 SC_EXP_14566_6#23 237 a8bb28f9f5e4308be67bf01a2969904a;67ccd0b67a0b10cb08c55a0646cda576 1313 d144a329221e85aea2a11513f1c003f3;a41ab234aeabbd9bdda3617c33aa7e7a SAMEA2658945 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730878/ERR730878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730878/ERR730878_2.fastq.gz 5202588 WGS GPS_ZA_1970-sc-2021583 RANDOM 154868954;160963008 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730878/ERR730878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730878/ERR730878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730878/14566_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730878/14566_6#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730878/ERR730878_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730878/ERR730878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730878/14566_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730878/14566_6#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257037214;8535 ERS508973 ERX674824 GENOMIC 11887174 520258800 2015-01-14 SC_RUN_14566_6#23 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730878/14566_6#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730878/14566_6#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#23 ERR662352 SC_EXP_13710_1#36 186 5d205c6d611dd1520a5fdd9ff06ec935;3709f687fea3f4bfb5f98e515a8ff7df 1313 dfd2b87568b52cf50eed57a8802114a4;8d5534d2a937ef9676a834d8cc03f9a4 SAMEA2521818 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662352/ERR662352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662352/ERR662352_2.fastq.gz 5895558 WGS 2013209060-sc-1947112 RANDOM 188891470;197299780 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662352/ERR662352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662352/ERR662352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662352/13710_1#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662352/13710_1#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662352/ERR662352_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662352/ERR662352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662352/13710_1#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662352/13710_1#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320631676;9623 ERS455358 ERX618628 GENOMIC 11100382 589555800 2014-10-28 SC_RUN_13710_1#36 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662352/13710_1#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662352/13710_1#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#36 ERR600344 SC_EXP_13415_4#34 250 c6d4c8bffe543743739676b2683e5bb4;8e3f332e808089712983fcda1ba1784e 1313 ea2202f4d15573dec67e88d75cdf5b60;d66b799ce9969b057be15c1bf503468e SAMEA2553810 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600344/ERR600344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600344/ERR600344_2.fastq.gz 3776820 WGS GPS_ZA_746-sc-1950891 RANDOM 121307247;126104946 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600344/ERR600344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600344/ERR600344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600344/13415_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600344/13415_4#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600344/ERR600344_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600344/ERR600344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600344/13415_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600344/13415_4#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 201513322;6197 ERS464311 ERX557173 GENOMIC 10631194 377682000 2014-09-16 SC_RUN_13415_4#34 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600344/13415_4#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600344/13415_4#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#34 ERR600479 SC_EXP_13415_5#75 246 ee1d7d1d713a4040f4af504a61f480bc;b70ffcbfd01c9411499fc2286d15455d 1313 319eb809ac665422e323848ebd173ca2;7f65e18790820cab996bf5bd1459e72a SAMEA2553994 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600479/ERR600479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600479/ERR600479_2.fastq.gz 4372836 WGS GPS_ZA_883-sc-1951029 RANDOM 142462030;148290844 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600479/ERR600479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600479/ERR600479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600479/13415_5#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600479/13415_5#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600479/ERR600479_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600479/ERR600479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600479/13415_5#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600479/13415_5#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239938088;7191 ERS464495 ERX557308 GENOMIC 10646223 437283600 2014-09-16 SC_RUN_13415_5#75 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600479/13415_5#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600479/13415_5#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#75 ERR570461 SC_EXP_12837_5#62 238 723dd8d2390b609b0b8d4dbf398180e3;3e4291ccc3f6089d01f93084c51abeb6 1313 c3ec4401e5740bc3b7fd274612ab405f;65ce058a6e1c614f4f0213299f06cb4d SAMEA2434826 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570461/ERR570461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570461/ERR570461_2.fastq.gz 5894328 WGS SA_GPS_SP281-sc-1895893 RANDOM 195667414;199909507 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570461/ERR570461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570461/ERR570461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570461/12837_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570461/12837_5#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570461/ERR570461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570461/ERR570461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570461/12837_5#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570461/12837_5#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 328059566;9718 ERS429003 ERX529450 GENOMIC 9993281 589432800 2014-07-28 SC_RUN_12837_5#62 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570461/12837_5#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570461/12837_5#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#62 ERR568533 SC_EXP_12837_2#16 237 889fce3a789b3abdb0ca5290c3efc136;64a44c37bf6fe198c76f66ae7c0a0755 1313 ec70c231c862e1c43fbe42349891c6d0;244a0ed341d1a5bbe624fc6d52ee800a SAMEA2434516 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568533/ERR568533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568533/ERR568533_2.fastq.gz 6075244 WGS SA_GPS_SP411-sc-1895580 RANDOM 204249264;206371665 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568533/ERR568533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568533/ERR568533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568533/12837_2#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568533/12837_2#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568533/ERR568533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568533/ERR568533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568533/12837_2#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568533/12837_2#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 340719444;10070 ERS428693 ERX527522 GENOMIC 9967278 607524400 2014-07-23 SC_RUN_12837_2#16 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568533/12837_2#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568533/12837_2#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_2#16 ERR554844 SC_EXP_12673_6#13 221 92ca5d6084f7ebaeca6215aa0227fc84;745680ef78d5ef6a1b24a9a29561cefc 1313 58b58f9757c0c4b879d6cb0a28fc6449;a744e6ab6898d78ac194570fcef22c83 SAMEA2382558 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554844/ERR554844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554844/ERR554844_2.fastq.gz 4819848 WGS 2110252-sc-1869803 RANDOM 158442459;178553189 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554844/ERR554844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554844/ERR554844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554844/12673_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554844/12673_6#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554844/ERR554844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554844/ERR554844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554844/12673_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554844/12673_6#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 280320990;7942 ERS408883 ERX513913 GENOMIC 9798946 481984800 2014-07-02 SC_RUN_12673_6#13 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554844/12673_6#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554844/12673_6#13.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#13 ERR505704 SC_EXP_12291_3#76 215 dd5b747bb4cb92af1c75e8104ebf31f7;832ecfb30c7c83c6193d3c28edd6b471 1313 d3ef7cb8b01b8211b1c528ddb52040aa;1fcb1f91f83f5451542e3a6718bf3913 SAMEA2335918 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505704/ERR505704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505704/ERR505704_2.fastq.gz 4275568 WGS PATH3476-sc-1810845 RANDOM 131484187;137531355 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505704/ERR505704_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505704/ERR505704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505704/12291_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505704/12291_3#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505704/ERR505704_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505704/ERR505704_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505704/12291_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505704/12291_3#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 219056991;7014 ERS394112 ERX471061 GENOMIC 9439851 427556800 2014-05-19 SC_RUN_12291_3#76 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505704/12291_3#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505704/12291_3#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#76 ERR505715 SC_EXP_12291_3#88 215 0fb0f000e15921d9f9b1780fa05fd1a1;9b8123589f4fb76d5d229279d971228e 1313 3463b8fa6b5041e825c228817bb91a33;6eb734bffa0bdcb4b0868246b9335094 SAMEA2335930 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505715/ERR505715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505715/ERR505715_2.fastq.gz 4053278 WGS PATH3488-sc-1810857 RANDOM 125251961;131516972 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505715/ERR505715_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505715/ERR505715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505715/12291_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505715/12291_3#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505715/ERR505715_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505715/ERR505715_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505715/12291_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505715/12291_3#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 207859754;6706 ERS394124 ERX471072 GENOMIC 9439900 405327800 2014-05-19 SC_RUN_12291_3#88 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505715/12291_3#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505715/12291_3#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#88 ERR501606 SC_EXP_12290_3#66 200 e7adce259e30874b0ab1c3e823aad4bf;7d5c25de9dd51d6ed0112e9103644d70 1313 56cd1c8fd3af1272e79b478a0ee95d38;b47b4f6918f430341024b05b2a174bf4 SAMEA2341329 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501606/ERR501606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501606/ERR501606_2.fastq.gz 3201694 WGS A59717-sc-1811402 RANDOM 98240194;104042406 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501606/ERR501606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501606/ERR501606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501606/12290_3#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501606/12290_3#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501606/ERR501606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501606/ERR501606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501606/12290_3#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501606/12290_3#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164925101;5291 ERS399000 ERX466963 GENOMIC 9467200 320169400 2014-05-12 SC_RUN_12290_3#66 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501606/12290_3#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501606/12290_3#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#66 ERR461811 SC_EXP_11861_5#74 221 8a0fa05a9533d5e3ff89522e2f6087a1;951eac3154981e191d658a33315fdf33 1313 44be584ea1f1c5c34b20e50c4cf39e8b;329353ce2a71b2e8d99fce37a323208a SAMEA2239299 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461811/ERR461811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461811/ERR461811_2.fastq.gz 4010032 WGS 2020487-sc-2013-11-05T12:11:19Z-1750672 RANDOM 124792319;130790404 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461811/ERR461811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461811/ERR461811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461811/11861_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461811/11861_5#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461811/ERR461811_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461811/ERR461811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461811/11861_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461811/11861_5#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 209270729;6564 ERS368111 ERX428152 GENOMIC 9017836 401003200 2014-03-18 SC_RUN_11861_5#74 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461811/11861_5#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461811/11861_5#74.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461779 SC_EXP_11861_5#41 221 f865cf5d4b4d8d5155c46756f237bdca;cb1dbb8b44fa413926b4848849066f09 1313 2ea379c82dfb9500f824e9837f6afeba;41ec189c82b008840264f845817afcf2 SAMEA2239267 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461779/ERR461779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461779/ERR461779_2.fastq.gz 4182792 WGS 2012265-sc-2013-11-05T12:10:48Z-1750639 RANDOM 129729184;135966392 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461779/ERR461779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461779/ERR461779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461779/11861_5#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461779/11861_5#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461779/ERR461779_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461779/ERR461779_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461779/11861_5#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461779/11861_5#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 216627424;6824 ERS368079 ERX428120 GENOMIC 9017820 418279200 2014-03-18 SC_RUN_11861_5#41 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461779/11861_5#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461779/11861_5#41.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR2091301 SC_EXP_23164_8#75 416 1df2c422e56dad46f157c1b9711e6d7c;3778874a4d1ebb6692d3f76e544ef0f3 1313 18852ab5c953cfa35d8f2796294b2a76;9dced99721c7fe9cdbae3112ad3ccc8f SAMEA104035853 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091301/ERR2091301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091301/ERR2091301_2.fastq.gz 3094794 WGS c3284150-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 61014012;64540124 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091301/ERR2091301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091301/ERR2091301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091301/23164_8#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091301/23164_8#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091301/ERR2091301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091301/ERR2091301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091301/23164_8#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091301/23164_8#75.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88212239;5124 ERS1699746 ERX2148095 GENOMIC DN488670S:D1 386849250 2017-08-08 SC_RUN_23164_8#75 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091301/23164_8#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091301/23164_8#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 23164_8#75 ERR461868 SC_EXP_11893_1#44 234 c72d6670d1bc0b0c05f26851b2829ccd;f5f8fd03e29ac7933cb850325ffd2e53 1313 78813453b8504bf6ceb3b93045a54355;268e8898aa66ff1612c62960c47cfeaf SAMEA2238800 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461868/ERR461868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461868/ERR461868_2.fastq.gz 4485470 WGS 2102713-sc-2013-11-05T12:02:39Z-1750163 RANDOM 154367587;162182469 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461868/ERR461868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461868/ERR461868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461868/11893_1#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461868/11893_1#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461868/ERR461868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461868/ERR461868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461868/11893_1#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461868/11893_1#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 260362179;7325 ERS367612 ERX428209 GENOMIC 9028165 448547000 2014-03-18 SC_RUN_11893_1#44 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461868/11893_1#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461868/11893_1#44.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR2091176 SC_EXP_22841_4#67 449 bcdae91ac9f42467df2a3933396ac3f2;2b9b6498e7429fe1e48607c25f5bbcb9 1313 42f01e62512894cbc39905fb0bef3cf1;51387ebe494c0f85e608cddd3ea8705a SAMEA104035373 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091176/ERR2091176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091176/ERR2091176_2.fastq.gz 2425956 WGS 999b8180-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51548878;52875581 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091176/ERR2091176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091176/ERR2091176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091176/22841_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091176/22841_4#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091176/ERR2091176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091176/ERR2091176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091176/22841_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091176/22841_4#67.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73073618;4045 ERS1699266 ERX2147970 GENOMIC DN477152P:C9 303244500 2017-08-08 SC_RUN_22841_4#67 112 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091176/22841_4#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091176/22841_4#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#67 ERR2089705 SC_EXP_22027_1#85 459 89fe6aca7c163407e345ab1cfda16746;7a5f238ce5a47c0ed1d78376570c5a09 1313 b78f12e52ad10adb9d0e5b4d14d05afa;57012e7bb64e67ef0537a7c7183d0490 SAMEA104154972 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089705/ERR2089705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089705/ERR2089705_2.fastq.gz 3217482 WGS 86d71d90-c37a-11e6-b158-3c4a9275d6c8 RANDOM 60353057;64096496 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089705/ERR2089705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089705/ERR2089705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089705/22027_1#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089705/22027_1#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089705/ERR2089705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089705/ERR2089705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089705/22027_1#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089705/22027_1#85.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87319215;5260 ERS1813990 ERX2146499 GENOMIC DN477277E:E11 402185250 2017-08-08 SC_RUN_22027_1#85 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089705/22027_1#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089705/22027_1#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#85 ERR2089545 SC_EXP_21999_8#100 464 245f2f0e8aa11545bdf8d9c194307edb;a33ea264a452a861057630ec1bb6ba78 1313 70f513af9726576f9ba591f070937d75;6e26f07b072cbdeadc3a4f732c685d7c SAMEA104154810 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089545/ERR2089545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089545/ERR2089545_2.fastq.gz 2016800 WGS 73845e60-c37a-11e6-b158-3c4a9275d6c8 RANDOM 37530214;40399055 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089545/ERR2089545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089545/ERR2089545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089545/21999_8#100.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089545/21999_8#100.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089545/ERR2089545_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089545/ERR2089545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089545/21999_8#100.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089545/21999_8#100.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 53555974;3410 ERS1813828 ERX2146339 GENOMIC DN476960M:D2 252100000 2017-08-08 SC_RUN_21999_8#100 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089545/21999_8#100.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089545/21999_8#100.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#100 ERR2089532 SC_EXP_21999_8#87 448 99644facc66aaf03da1ee0b93cbc94a4;37336a5893d596484a35e564a8b6e9ae 1313 ea2c693085d638e3d892dde59faca0bf;498f992a0012875eb47f978edaab9b4d SAMEA104154801 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089532/ERR2089532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089532/ERR2089532_2.fastq.gz 2873554 WGS 72d6b940-c37a-11e6-b158-3c4a9275d6c8 RANDOM 52234590;55157352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089532/ERR2089532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089532/ERR2089532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089532/21999_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089532/21999_8#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089532/ERR2089532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089532/ERR2089532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089532/21999_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089532/21999_8#87.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74971218;4719 ERS1813819 ERX2146326 GENOMIC DN476959T:G11 359194250 2017-08-08 SC_RUN_21999_8#87 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089532/21999_8#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089532/21999_8#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#87 ERR2089413 SC_EXP_21999_7#151 466 39f30ee46eccd2ddb0f196213399792d;8ce840716563ae38c3839fdc6f14ebae 1313 4ced7c064b45e01bd5ad7c906d2f9a04;75fa263b31359ad8c7bbcf8e51a22ade SAMEA104154678 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089413/ERR2089413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089413/ERR2089413_2.fastq.gz 2399516 WGS 67a79080-c37a-11e6-b158-3c4a9275d6c8 RANDOM 49150607;53891016 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089413/ERR2089413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089413/ERR2089413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089413/21999_7#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089413/21999_7#151.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089413/ERR2089413_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089413/ERR2089413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089413/21999_7#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089413/21999_7#151.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72338746;4001 ERS1813696 ERX2146207 GENOMIC DN476874P:H7 299939500 2017-08-08 SC_RUN_21999_7#151 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089413/21999_7#151.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089413/21999_7#151.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#151 ERR2089499 SC_EXP_21999_8#54 456 b622439933f5abfb8f655e7a97108a43;fbf1d394d86ad7181a15cb6a30fe0b12 1313 1639ca3824e5261c1616eaddce9e6569;a34818b611414c4db0bcb29e1c06329b SAMEA104154765 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089499/ERR2089499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089499/ERR2089499_2.fastq.gz 2737388 WGS 71482a00-c37a-11e6-b158-3c4a9275d6c8 RANDOM 49120774;51381243 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089499/ERR2089499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089499/ERR2089499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089499/21999_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089499/21999_8#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089499/ERR2089499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089499/ERR2089499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089499/21999_8#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089499/21999_8#54.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69926160;4562 ERS1813783 ERX2146293 GENOMIC DN476959T:F7 342173500 2017-08-08 SC_RUN_21999_8#54 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089499/21999_8#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089499/21999_8#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#54 ERR1191825 SC_EXP_17794_7#3 458 8655249ecf797542dcb6ad038b65526d;f41cd083994ef8dd33729019fbe8c541 1313 972291905dce260d0d3f9fb184a88e09;9c94a509625097df93a536d7de50d242 SAMEA3381548 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191825/ERR1191825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191825/ERR1191825_2.fastq.gz 4023764 WGS GPS_GM_2010-sc-2279426 RANDOM 83452824;82432896 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191825/ERR1191825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191825/ERR1191825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191825/17794_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191825/17794_7#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191825/ERR1191825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191825/ERR1191825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191825/17794_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191825/17794_7#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 129393711;6628 ERS719807 ERX1265209 GENOMIC 14934755 502970500 2015-12-17 SC_RUN_17794_7#3 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191825/17794_7#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191825/17794_7#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#3 ERR714661 SC_EXP_14412_2#29 223 149dc3c62d63d6c7f1ded764b72d03f4;2dd1cf2d81dddc2db8ba4155435fda28 1313 c3c33e4050dc80e8c5c45f546bdbaf28;ca3cca6f77e7df9dae9c0defab3ff3ca SAMEA2659129 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714661/ERR714661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714661/ERR714661_2.fastq.gz 5159508 WGS GPS_ZA_1881-sc-2021478 RANDOM 177761252;180564482 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714661/ERR714661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714661/ERR714661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714661/14412_2#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714661/14412_2#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714661/ERR714661_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714661/ERR714661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714661/14412_2#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714661/14412_2#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293984932;8460 ERS509157 ERX658583 GENOMIC 11883006 515950800 2015-01-08 SC_RUN_14412_2#29 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714661/14412_2#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714661/14412_2#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#29 ERR1788388 SC_EXP_21127_2#2 469 94e65b1f6b5611815939b02cc6ca82cf;93d0faf0db49810340521a4316a73142 1313 2eb681ff4dc84380bc3e6afcb2e53e94;353abd278745bb1ffcf6bc8839f5d5bf SAMEA4388348 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788388/ERR1788388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788388/ERR1788388_2.fastq.gz 2878002 WGS 4b9c2c10-5256-11e6-9a3d-3c4a9275d6c8 RANDOM 61288165;61326879 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788388/ERR1788388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788388/ERR1788388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788388/21127_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788388/21127_2#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788388/ERR1788388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788388/ERR1788388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788388/21127_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788388/21127_2#2.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87602907;4809 ERS1299797 ERX1852111 GENOMIC DN465286P:B1 359750250 2017-01-11 SC_RUN_21127_2#2 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788388/21127_2#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788388/21127_2#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#2 ERR632988 SC_EXP_13415_7#59 225 57aaefa33bdc34e5c69878dfc08b25bf;6d8e82b0cfe39acc40d0895c3769658b 1313 5443f098419cb71aadaf35f1c585afd8;8475fd46e5aea0beb36689872fdf0d58 SAMEA2554170 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632988/ERR632988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632988/ERR632988_2.fastq.gz 4338190 WGS GPS_ZA_1059-sc-1951207 RANDOM 146123957;151682656 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632988/ERR632988_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632988/ERR632988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632988/13415_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632988/13415_7#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632988/ERR632988_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632988/ERR632988_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632988/13415_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632988/13415_7#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244440290;7083 ERS464671 ERX589542 GENOMIC 10646318 433819000 2014-09-23 SC_RUN_13415_7#59 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632988/13415_7#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632988/13415_7#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#59 ERR730301 SC_EXP_14520_5#68 224 d4e4af4648856cef5a4542678356f71e;5f72adfb3fc308cb3f803dc0de8d6042 1313 5a9bd087d62ed34887b706b9ced4da7e;ca782eb56724177ccef25b2bce04f1e0 SAMEA2696487 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730301/ERR730301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730301/ERR730301_2.fastq.gz 4252420 WGS GPS_GM_0681-sc-2021942 RANDOM 157304374;160252385 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730301/ERR730301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730301/ERR730301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730301/14520_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730301/14520_5#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730301/ERR730301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730301/ERR730301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730301/14520_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730301/14520_5#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262269475;6966 ERS525066 ERX674247 GENOMIC 11982884 425242000 2015-01-14 SC_RUN_14520_5#68 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730301/14520_5#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730301/14520_5#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#68 ERR570405 SC_EXP_12837_5#4 238 a927eb5aa0785190cef3cc1214e9644d;de61fae53e2f662060281c6ba86c074a 1313 6a29da29080b85ae56f13a0c4ffd4a96;f56d3e76b0507590a4105da681a9e6a0 SAMEA2434768 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570405/ERR570405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570405/ERR570405_2.fastq.gz 6414434 WGS SA_GPS_SP663-sc-1895834 RANDOM 212394845;217122655 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570405/ERR570405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570405/ERR570405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570405/12837_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570405/12837_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570405/ERR570405_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570405/ERR570405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570405/12837_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570405/12837_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 356364282;10581 ERS428945 ERX529394 GENOMIC 9993250 641443400 2014-07-28 SC_RUN_12837_5#4 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570405/12837_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570405/12837_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#4 ERR563973 SC_EXP_12754_4#30 232 0decc83516b41a3092b13a321732412c;34067af4c54723d0520c8b15a5634d2a 1313 8c6dc72315565b566ef83e04805a0bf9;ad5dd17e07c0dce0fcdd24cecb9a308a SAMEA2383240 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563973/ERR563973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563973/ERR563973_2.fastq.gz 4990898 WGS 2120296_II-sc-1870492 RANDOM 173598222;177358091 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563973/ERR563973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563973/ERR563973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563973/12754_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563973/12754_4#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563973/ERR563973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563973/ERR563973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563973/12754_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563973/12754_4#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 290796572;8198 ERS409565 ERX522998 GENOMIC 9922267 499089800 2014-07-16 SC_RUN_12754_4#30 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563973/12754_4#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563973/12754_4#30.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#30 ERR568735 SC_EXP_12837_4#49 226 2fe74f8f47a7bfaafd4b6e2f26acada8;1b1b74286e5c5f581634399103ed1304 1313 934b6da61ce46a97088a71b0f1104354;e98d530373eb05d6604e2ea1445650d5 SAMEA2434725 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568735/ERR568735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568735/ERR568735_2.fastq.gz 5425214 WGS SA_GPS_SP620-sc-1895791 RANDOM 187534886;191069442 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568735/ERR568735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568735/ERR568735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568735/12837_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568735/12837_4#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568735/ERR568735_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568735/ERR568735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568735/12837_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568735/12837_4#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313938136;8886 ERS428902 ERX527724 GENOMIC 9986199 542521400 2014-07-23 SC_RUN_12837_4#49 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568735/12837_4#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568735/12837_4#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#49 ERR563904 SC_EXP_12754_3#55 235 a974c42d712b9011f51f71671626fcf9;e0af03ab28f7ea3efa916b9f7a4af027 1313 8f80994a2d1ed58a3faebb051487bd94;a16cff46b20559ef6116a6a282994c96 SAMEA2383170 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563904/ERR563904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563904/ERR563904_2.fastq.gz 4728586 WGS 2110252_II-sc-1870421 RANDOM 162170611;167268778 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563904/ERR563904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563904/ERR563904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563904/12754_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563904/12754_3#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563904/ERR563904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563904/ERR563904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563904/12754_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563904/12754_3#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271723072;7813 ERS409495 ERX522929 GENOMIC 9922088 472858600 2014-07-16 SC_RUN_12754_3#55 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563904/12754_3#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563904/12754_3#55.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#55 ERR563847 SC_EXP_12754_2#93 209 733bc6bcbd927ce4e6d01c8e5a899e07;bb6c89eba48e789ade20ccfa227e0ab6 1313 f76ecf77d00981f9fba3f7462fb07495;912479e4f3696192c7ae75ae0c3e9d74 SAMEA2383113 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563847/ERR563847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563847/ERR563847_2.fastq.gz 4963452 WGS 2100507_II-sc-1870363 RANDOM 167371102;172065910 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563847/ERR563847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563847/ERR563847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563847/12754_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563847/12754_2#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563847/ERR563847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563847/ERR563847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563847/12754_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563847/12754_2#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 281951156;8149 ERS409438 ERX522872 GENOMIC 9918626 496345200 2014-07-16 SC_RUN_12754_2#93 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563847/12754_2#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563847/12754_2#93.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#93 ERR501589 SC_EXP_12290_3#49 200 7f21885f53026a6bb02ce7c1e48199e5;6746ea816288d67be40d1fef7ec7f9d6 1313 15d3334f5ae8a8d831bdef0843bc27ec;064b463cc35204040c222bfe0b2cf98e SAMEA2341290 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501589/ERR501589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501589/ERR501589_2.fastq.gz 3895592 WGS 879-sc-1811361 RANDOM 117478197;122885236 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501589/ERR501589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501589/ERR501589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501589/12290_3#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501589/12290_3#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501589/ERR501589_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501589/ERR501589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501589/12290_3#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501589/12290_3#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 195067869;6330 ERS398961 ERX466946 GENOMIC 9467186 389559200 2014-05-12 SC_RUN_12290_3#49 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501589/12290_3#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501589/12290_3#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#49 ERR554983 SC_EXP_12673_7#57 217 b5a72ef06f9bb32f932c6cdc76cdb035;5ce618125a7a13f9d1b687502a5af8d5 1313 851b5cd63b84b81460fe7705021a5e4f;3ce488a848274691bd885a9db52424f2 SAMEA2382697 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554983/ERR554983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554983/ERR554983_2.fastq.gz 4719676 WGS 2000391_II-sc-1869943 RANDOM 158904336;178075650 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554983/ERR554983_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554983/ERR554983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554983/12673_7#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554983/12673_7#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554983/ERR554983_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554983/ERR554983_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554983/12673_7#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554983/12673_7#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 279680877;7869 ERS409022 ERX514052 GENOMIC 9799001 471967600 2014-07-02 SC_RUN_12673_7#57 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554983/12673_7#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554983/12673_7#57.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#57 ERR048176 SC_EXP_6631_6#19 211 12c75463eeda29e6d27dfe160b4b7fd0 1313 60c44fc97fc179b8f70c2856b0ecea72;2a837a51bb305ea472b6872909d525ed SAMEA1023975 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048176/ERR048176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048176/ERR048176_2.fastq.gz 7714487 WGS SMRU499-sc-2011-01-27-1060688 RANDOM 482402882;499077372 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048176/ERR048176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048176/ERR048176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048176/6631_6#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048176/ERR048176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048176/ERR048176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048176/6631_6#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1240668353 ERS019657 ERX025239 GENOMIC 3037818 1157173050 2011-10-11 SC_RUN_6631_6#19 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048176/6631_6#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048088 SC_EXP_6631_3#3 227 6914f9c4d5322b1477f9f5c0b04cb2e7 1313 640b90f018e3f7dad12c350a6062a3bc;b8c96b2324bd6e86f8663f7ba18c7a1f SAMEA1024150 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048088/ERR048088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048088/ERR048088_2.fastq.gz 2756569 WGS SMRU411-sc-2011-01-27-1060600 RANDOM 152093753;143219992 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048088/ERR048088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048088/ERR048088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048088/6631_3#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048088/ERR048088_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048088/ERR048088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048088/6631_3#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 386055017 ERS019569 ERX025151 GENOMIC 2952198 413485350 2011-10-11 SC_RUN_6631_3#3 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048088/6631_3#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR433519 SC_EXP_11657_1#89 250 6ae7480592db47c666efc64426dddd4a;5fc65996bc266e91a0880925b9a6e877 1313 52066f664ba563ce2e411261816776de;ea543aca9d8ce6dcf6aef0915e8435b7 SAMEA1965368 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433519/ERR433519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433519/ERR433519_2.fastq.gz 5651522 WGS 0986_00-sc-2013-07-03T13:40:29Z-1659538 RANDOM 183508172;186522754 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433519/ERR433519_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433519/ERR433519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433519/11657_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433519/11657_1#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433519/ERR433519_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433519/ERR433519_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433519/11657_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433519/11657_1#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304814625;9367 ERS322703 ERX399794 GENOMIC 8734990 565152200 2014-02-18 SC_RUN_11657_1#89 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433519/11657_1#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433519/11657_1#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_1#89 ERR067836 SC_EXP_6972_4#21 234 88b84f3da50767544fe75725b27ebfcf 1313 7d6c67f0692284af1f857354f8e126b7;834b0fd47c865aba82a0a1dc74a94927 SAMEA1028726 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067836/ERR067836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067836/ERR067836_2.fastq.gz 4146568 WGS SMRU2613-sc-2011-01-27-1062826 RANDOM 257362974;264267046 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067836/ERR067836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067836/ERR067836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067836/6972_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067836/ERR067836_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067836/ERR067836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067836/6972_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 672844910 ERS022123 ERX045699 GENOMIC 3686288 621985200 2012-01-16 SC_RUN_6972_4#21 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067836/6972_4#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR051479 SC_EXP_6730_5#21 234 185aeb42fde92334cc5aa395b952c323 1313 8462b262f732dfd39206a9e7aedfff1f;e3eb117837860e0aa3c3f4540c883f5a SAMEA1024785 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051479/ERR051479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051479/ERR051479_2.fastq.gz 2387089 WGS SMRU669-sc-2011-01-27-1060858 RANDOM 141744143;148598822 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051479/ERR051479_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051479/ERR051479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051479/6730_5#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051479/ERR051479_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051479/ERR051479_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051479/6730_5#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 363434271 ERS020179 ERX028527 GENOMIC 3100170 358063350 2011-11-02 SC_RUN_6730_5#21 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051479/6730_5#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR316845 SC_EXP_9789_5#1 239 02e59dceffe54a58915602b0591f96aa 1313 e926a7ec7a28c5ec8a8f02ca8a6d0461;3e70996211b8cd640492ef9064ded4e3 SAMEA2050708 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316845/ERR316845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316845/ERR316845_2.fastq.gz 2381236 WGS 4792-sc-2013-02-18T14:46:38Z-1561982 RANDOM 147602553;159545717 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316845/ERR316845_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316845/ERR316845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316845/9789_5#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316845/ERR316845_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316845/ERR316845_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316845/9789_5#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 427261275 ERS215196 ERX289993 GENOMIC 7125919 476247200 2013-07-22 SC_RUN_9789_5#1 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316845/9789_5#1.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 ERR057851 SC_EXP_6823_1#22 240 369d3417dddf4f5b10424138128c31de 1313 4734642142ffb928997a177f1cdf2a8a;3f25f5b8ef6808b79675a9dd421021ef SAMEA1025883 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057851/ERR057851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057851/ERR057851_2.fastq.gz 5852290 WGS SMRU1870-sc-2011-01-27-1062083 RANDOM 355914798;370839567 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057851/ERR057851_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057851/ERR057851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057851/6823_1#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057851/ERR057851_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057851/ERR057851_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057851/6823_1#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 920778850 ERS021380 ERX035697 GENOMIC 3469099 877843500 2012-03-22 SC_RUN_6823_1#22 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057851/6823_1#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR316849 SC_EXP_9789_5#5 239 fdf2a424ef70f4bd57b9c0720f9491bc 1313 23070d0035c82a7b60bae26b647e7b73;ef09e419806e98872579b344de1ae7f4 SAMEA2052367 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316849/ERR316849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316849/ERR316849_2.fastq.gz 1677628 WGS 4732-sc-2013-02-18T14:46:43Z-1561986 RANDOM 104637725;112668835 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316849/ERR316849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316849/ERR316849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316849/9789_5#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316849/ERR316849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316849/ERR316849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316849/9789_5#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304022789 ERS215200 ERX289997 GENOMIC 7125967 335525600 2013-07-22 SC_RUN_9789_5#5 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316849/9789_5#5.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#5 ERR316643 SC_EXP_9789_2#72 213 9d97a94cf7abe876f72b533d526d42a4 1313 d45610c927e357978c3163f0fc9ec2aa;561dfcfee784847cc269d17f0f950892 SAMEA2051631 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316643/ERR316643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316643/ERR316643_2.fastq.gz 3079490 WGS A59815-sc-2013-02-18T14:42:44Z-1561768 RANDOM 199836095;219201531 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316643/ERR316643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316643/ERR316643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316643/9789_2#72.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316643/ERR316643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316643/ERR316643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316643/9789_2#72.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 570723016 ERS214986 ERX289791 GENOMIC 7066828 615898000 2013-07-22 SC_RUN_9789_2#72 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316643/9789_2#72.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#72 ERR2089713 SC_EXP_22027_1#93 450 bcafb45bd8af9c3c094847fb50be9eec;19c0b1463aadf32f9a51bdb9a9be306e 1313 d7c93883f5ff43660c99420b815fcfa8;1be03889006f6dac71e7a60a35ca4655 SAMEA104155068 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089713/ERR2089713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089713/ERR2089713_2.fastq.gz 3327130 WGS 910020f0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 60448975;66178837 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089713/ERR2089713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089713/ERR2089713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089713/22027_1#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089713/22027_1#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089713/ERR2089713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089713/ERR2089713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089713/22027_1#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089713/22027_1#93.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90105446;5459 ERS1814086 ERX2146507 GENOMIC DN477278F:E1 415891250 2017-08-08 SC_RUN_22027_1#93 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089713/22027_1#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089713/22027_1#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#93 ERR1947266 SC_EXP_21903_8#112 432 fb5a0f114aaddde78a87a92efa8aa3e9;e93f57c3d48ea05fbd35e68c3da5d713 1313 7e275cb9a1792499ba40ec9dd059b67a;b238f7221f6fc0214696a5f91529b804 SAMEA4561293 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947266/ERR1947266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947266/ERR1947266_2.fastq.gz 2343200 WGS 1be10940-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57795486;86295657 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947266/ERR1947266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947266/ERR1947266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947266/21903_8#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947266/21903_8#112.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947266/ERR1947266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947266/ERR1947266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947266/21903_8#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947266/21903_8#112.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106353650;3956 ERS1460472 ERX2013053 GENOMIC 18430324 353823200 2017-04-25 SC_RUN_21903_8#112 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947266/21903_8#112.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947266/21903_8#112.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR023387 SC_EXP_4564_2#2 172 c63a3f7dd22d2b350e68edfca9ddcceb 1313 d8a38ab149badc1b15e2d88f01e7224c;d56b90604129a3ad30961d9a0010bea5 SAMEA867950 2011-01-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023387/ERR023387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023387/ERR023387_2.fastq.gz 3408694 WGS D28531-sc-2010-05-07-30524 RANDOM 288340119;273249327 SRF Streptococcus pneumoniae Malawi pneumococcal genomic snapshot ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023387/ERR023387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR023/ERR023387/ERR023387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR023/ERR023387/4564_2#2.srf ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR023/ERR023387/ERR023387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR023/ERR023387/ERR023387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR023/ERR023387/4564_2#2.srf Illumina Genome Analyzer II PAIRED Wellcome Sanger Institute;SC PRJEB2131 ERP000185 4768357116 ERS006818 ERX2007815 GENOMIC NT203585D 760138762 2011-01-06 SC_RUN_4564_2#2 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR023/ERR023387/4564_2#2.srf Malawi pneumococcal genomic snapshot-sc-2010-04-15 Illumina Genome Analyzer II paired end sequencing ERA015706 4564_2#2 ERR1788488 SC_EXP_21127_2#103 441 e9d9941b42b7cdaeab1b9abf0bbd5e6b;e66f8d878b04537ac22aa12e6b127c61 1313 d803e20f8689b70c5343abcbace7f1a6;36a29b95021fe52d9aab5efdf8c507e7 SAMEA4388430 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788488/ERR1788488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788488/ERR1788488_2.fastq.gz 2776496 WGS 421113c0-5a14-11e6-af69-3c4a9275d6c8 RANDOM 57387197;59427740 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788488/ERR1788488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788488/ERR1788488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788488/21127_2#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788488/21127_2#103.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788488/ERR1788488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788488/ERR1788488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788488/21127_2#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788488/21127_2#103.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84071649;4631 ERS1299879 ERX1852211 GENOMIC DN465287Q:H1 347062000 2017-01-11 SC_RUN_21127_2#103 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788488/21127_2#103.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788488/21127_2#103.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#103 ERR1788477 SC_EXP_21127_2#92 460 a3b7b13fde2ce14d095cd506b30fec5f;a9d99720356a5c9523939ee2738ab02e 1313 2a0eaf9b019c7270b21f4f3c1bddf791;d91b94a6211180ccdb9876606138c953 SAMEA4388072 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788477/ERR1788477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788477/ERR1788477_2.fastq.gz 2709380 WGS 41b31540-5a14-11e6-af69-3c4a9275d6c8 RANDOM 59254645;58759534 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788477/ERR1788477_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788477/ERR1788477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788477/21127_2#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788477/21127_2#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/007/ERR1788477/ERR1788477_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/007/ERR1788477/ERR1788477_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788477/21127_2#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788477/21127_2#92.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85069288;4504 ERS1299521 ERX1852200 GENOMIC DN465286P:D12 338672500 2017-01-11 SC_RUN_21127_2#92 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788477/21127_2#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788477/21127_2#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#92 ERR1788156 SC_EXP_21053_8#145 407 e7b2ccf216d71eee7fa825d873507a48;af9b904c63ceb3a627b9099d00117383 1313 861df7fa67de28ee6605a33f8edf58b0;558f323cd8ced6457390e5ad909b45fe SAMEA4387910 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/006/ERR1788156/ERR1788156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/006/ERR1788156/ERR1788156_2.fastq.gz 3172054 WGS 5a8a7520-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 61149373;66044817 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/006/ERR1788156/ERR1788156_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/006/ERR1788156/ERR1788156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788156/21053_8#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788156/21053_8#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/006/ERR1788156/ERR1788156_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/006/ERR1788156/ERR1788156_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788156/21053_8#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788156/21053_8#145.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92263028;5273 ERS1299359 ERX1851879 GENOMIC DN465033T:B7 396506750 2017-01-11 SC_RUN_21053_8#145 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788156/21053_8#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788156/21053_8#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#145 ERR1788354 SC_EXP_21127_1#157 444 4e1210364fa048b0e235bfa757abf4f6;e528c6364e2e307ea5611050b745b3fd 1313 3db96a67b2c83f3395205ae3731d5892;00b468c68ec60b24c747b9fa9a1f9269 SAMEA4388233 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788354/ERR1788354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788354/ERR1788354_2.fastq.gz 2181972 WGS 4a08bad0-5256-11e6-9a3d-3c4a9275d6c8 RANDOM 40180269;42931668 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788354/ERR1788354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/004/ERR1788354/ERR1788354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788354/21127_1#157.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788354/21127_1#157.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/004/ERR1788354/ERR1788354_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/004/ERR1788354/ERR1788354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788354/21127_1#157.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788354/21127_1#157.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 59374742;3688 ERS1299682 ERX1852077 GENOMIC DN465134A:G8 272746500 2017-01-11 SC_RUN_21127_1#157 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788354/21127_1#157.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788354/21127_1#157.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#157 ERR1453634 SC_EXP_19341_2#167 444 59e1aede6462402d7ce5ca2f0261d17f;9a9cacf96be35c5fdc6b8d1e85c69412 1313 ae801f263926dcc84f7b8d75a4fc795f;6f964bc24493b7b253bf4cd6ab22adb3 SAMEA3713899 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453634/ERR1453634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453634/ERR1453634_2.fastq.gz 2267496 WGS 3882f8c0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 43672841;51340794 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453634/ERR1453634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/004/ERR1453634/ERR1453634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453634/19341_2#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453634/19341_2#167.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/004/ERR1453634/ERR1453634_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/004/ERR1453634/ERR1453634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453634/19341_2#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453634/19341_2#167.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67565153;3891 ERS1021048 ERX1524112 GENOMIC 15972606 283437000 2016-06-14 SC_RUN_19341_2#167 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453634/19341_2#167.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453634/19341_2#167.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#167 ERR1422591 SC_EXP_19084_8#78 450 6024603cff89e9b4c459554a271aa4cc;f7192e50fa35e227004c7bba2495b127 1313 0f15b01b004ad13e14f0dd2cd10b1053;d4eb55e7594b7119ba5a02c6b8914810 SAMEA3714415 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422591/ERR1422591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422591/ERR1422591_2.fastq.gz 2289030 WGS 51934ae0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 51498204;52480147 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422591/ERR1422591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422591/ERR1422591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422591/19084_8#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422591/19084_8#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/001/ERR1422591/ERR1422591_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/001/ERR1422591/ERR1422591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422591/19084_8#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422591/19084_8#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74540718;3908 ERS1021564 ERX1493173 GENOMIC 15758446 286128750 2016-05-24 SC_RUN_19084_8#78 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422591/19084_8#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422591/19084_8#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#78 ERR1422565 SC_EXP_19084_8#52 426 6ddaddfb61e45c85d2e24febe64df571;4716ee2bf649067367f72fff8f2e2878 1313 e33be7c9b75ad0e27c7064b495a1f8ef;fc7f42311b590ce28fba9234fae73a04 SAMEA3714389 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422565/ERR1422565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422565/ERR1422565_2.fastq.gz 2750622 WGS 4e82af80-41bd-11e5-998e-3c4a9275d6c6 RANDOM 62620188;62495314 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422565/ERR1422565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422565/ERR1422565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422565/19084_8#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422565/19084_8#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422565/ERR1422565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422565/ERR1422565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422565/19084_8#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422565/19084_8#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90750635;4557 ERS1021538 ERX1493147 GENOMIC 15758419 343827750 2016-05-24 SC_RUN_19084_8#52 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422565/19084_8#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422565/19084_8#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#52 ERR1202326 SC_EXP_17870_8#66 447 b35f7d7eeeb6c37471a76f6a3cfb48f3;eb8b4e756a0647591e3b005a3ca42118 1313 ec658d7c8f743872b88ab9e5cdecd5e3;7bdbc0d6fcb4fcafc2abbdd1cfa6c036 SAMEA3389769 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202326/ERR1202326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202326/ERR1202326_2.fastq.gz 2353366 WGS GPS_MW_C14793-sc-2296013 RANDOM 43864954;44585395 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202326/ERR1202326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202326/ERR1202326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202326/17870_8#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202326/17870_8#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202326/ERR1202326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202326/ERR1202326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202326/17870_8#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202326/17870_8#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66623458;3986 ERS725872 ERX1274568 GENOMIC 14977692 294170750 2016-01-12 SC_RUN_17870_8#66 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202326/17870_8#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202326/17870_8#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#66 ERR1288835 SC_EXP_18456_1#26 459 ec52dea30953dfc2984568e48fb63723;e42d47847e991aa3aa3463b9cbdcb8a7 1313 1e363559de77f56204c8a1b6631807f0;a700fdc5750671da37207572b61a73e2 SAMEA3389221 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288835/ERR1288835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288835/ERR1288835_2.fastq.gz 2211092 WGS GPS_MW_149382-sc-2295694 RANDOM 53133575;46758502 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288835/ERR1288835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288835/ERR1288835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288835/18456_1#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288835/18456_1#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/005/ERR1288835/ERR1288835_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/005/ERR1288835/ERR1288835_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288835/18456_1#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288835/18456_1#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70415151;3768 ERS725324 ERX1360441 GENOMIC 14970295 276386500 2016-02-23 SC_RUN_18456_1#26 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288835/18456_1#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288835/18456_1#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#26 ERR1202115 SC_EXP_17870_7#45 463 1e8b0218c2ed97743c736e1f55989ec2;ac48ef0f6d757c28d3770a2c3e826066 1313 98e1db8bba7bee2592c5c57ae879e4a5;ecb295ff26b47d9e3f87f4c1462064cc SAMEA3389691 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202115/ERR1202115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202115/ERR1202115_2.fastq.gz 2746266 WGS GPS_MW_BQN1IL-sc-2295933 RANDOM 52324057;54189457 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202115/ERR1202115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202115/ERR1202115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202115/17870_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202115/17870_7#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/005/ERR1202115/ERR1202115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/005/ERR1202115/ERR1202115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202115/17870_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202115/17870_7#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80627094;4587 ERS725794 ERX1274357 GENOMIC 14978327 343283250 2016-01-12 SC_RUN_17870_7#45 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202115/17870_7#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202115/17870_7#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#45 ERR1192161 SC_EXP_17794_8#150 441 fdf6b296056d2b7d0ab677c25d3c992a;402e9e7c7f1f775eb4575d1ece8ab234 1313 e23bb40ef518ad7556844110a74f48b7;47489dff5e62a25975d9a26b9b965ba0 SAMEA3388919 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192161/ERR1192161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192161/ERR1192161_2.fastq.gz 2698424 WGS GPS_MA_198-sc-2279601 RANDOM 50417842;54018558 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192161/ERR1192161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192161/ERR1192161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192161/17794_8#150.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192161/17794_8#150.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192161/ERR1192161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192161/ERR1192161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192161/17794_8#150.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192161/17794_8#150.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80500809;4497 ERS725022 ERX1265545 GENOMIC 14941706 337303000 2015-12-17 SC_RUN_17794_8#150 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192161/17794_8#150.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192161/17794_8#150.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#150 ERR1192111 SC_EXP_17794_8#100 441 f4338807a1ae247e65a8434bff7465ee;031821c2486f50d29e01f4dc3adc68a1 1313 06efcebab45c9147b9a5091270353e36;ae92adcc123cf4b170b3b451b03fb0e5 SAMEA3381647 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192111/ERR1192111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192111/ERR1192111_2.fastq.gz 3372552 WGS GPS_GM_2158-sc-2279529 RANDOM 60646409;68148699 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192111/ERR1192111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192111/ERR1192111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192111/17794_8#100.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192111/17794_8#100.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192111/ERR1192111_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192111/ERR1192111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192111/17794_8#100.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192111/17794_8#100.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 100297672;5593 ERS719906 ERX1265495 GENOMIC 14941676 421569000 2015-12-17 SC_RUN_17794_8#100 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192111/17794_8#100.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192111/17794_8#100.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#100 ERR1192101 SC_EXP_17794_8#90 441 62df9cd9dc1c5cdd9114b6b936d7591a;269087877214d520bb0d63e93c263c73 1313 5ef8377ca6b8d9587830456ecca86839;ccf9406100e1808c46401ccfaf4b17da SAMEA3381637 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192101/ERR1192101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192101/ERR1192101_2.fastq.gz 2742078 WGS GPS_GM_2148-sc-2279517 RANDOM 57827508;53479127 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192101/ERR1192101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1192101/ERR1192101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192101/17794_8#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192101/17794_8#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192101/ERR1192101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1192101/ERR1192101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192101/17794_8#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192101/17794_8#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85571884;4583 ERS719896 ERX1265485 GENOMIC 14941554 342759750 2015-12-17 SC_RUN_17794_8#90 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192101/17794_8#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192101/17794_8#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#90 ERR1192017 SC_EXP_17794_8#6 441 a3549bfaaa1330e6eefcf08872f4649d;4ccbc467023072a726587793333870df 1313 afdcfd98201f6e44857b448a7e5bf8b5;1b1c72131e9d133c9ee3dda571b2fdb4 SAMEA3381471 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192017/ERR1192017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192017/ERR1192017_2.fastq.gz 3061762 WGS GPS_GM_2034-sc-2279349 RANDOM 58270442;60732503 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192017/ERR1192017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1192017/ERR1192017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192017/17794_8#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192017/17794_8#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1192017/ERR1192017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1192017/ERR1192017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192017/17794_8#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192017/17794_8#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91854605;5046 ERS719730 ERX1265401 GENOMIC 14941591 382720250 2015-12-17 SC_RUN_17794_8#6 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192017/17794_8#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192017/17794_8#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#6 ERR1191938 SC_EXP_17794_7#116 458 d507a3100a96e7a9f526ddab96a09e22;1926e01fdd56e1fe147d1dab30869372 1313 c6faafd20182835eeefe791f6029d154;a242f301747f608f7bc88fe4f7acde89 SAMEA3381434 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191938/ERR1191938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191938/ERR1191938_2.fastq.gz 2222472 WGS GPS_GM_1946-sc-2279312 RANDOM 43331946;46762417 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191938/ERR1191938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191938/ERR1191938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191938/17794_7#116.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191938/17794_7#116.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1191938/ERR1191938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1191938/ERR1191938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191938/17794_7#116.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191938/17794_7#116.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68888421;3753 ERS719693 ERX1265322 GENOMIC 14934878 277809000 2015-12-17 SC_RUN_17794_7#116 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191938/17794_7#116.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191938/17794_7#116.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#116 ERR1191927 SC_EXP_17794_7#105 458 ee836ac3af77a2537a28f68a43a8fbd5;cd1ae4df528b3e60984ffdc228bd95ab 1313 c1b0d3b1a9b604cc1249a9819478549c;95f3779acf348c68e161fa08de5883d2 SAMEA3381422 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191927/ERR1191927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191927/ERR1191927_2.fastq.gz 2028986 WGS GPS_GM_1934-sc-2279300 RANDOM 39425061;43020692 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191927/ERR1191927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191927/ERR1191927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191927/17794_7#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191927/17794_7#105.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191927/ERR1191927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191927/ERR1191927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191927/17794_7#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191927/17794_7#105.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62983031;3434 ERS719681 ERX1265311 GENOMIC 14934841 253623250 2015-12-17 SC_RUN_17794_7#105 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191927/17794_7#105.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191927/17794_7#105.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#105 ERR1191881 SC_EXP_17794_7#59 458 4334893a76ee9f2a8564977f473e6f9f;ce549bace048e5939f807a6eb3d81794 1313 d43aa1430ea06d6dbc2166b079f9a823;c2b8fdf081b5fe68745fa92d3c0ec2f5 SAMEA3388908 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191881/ERR1191881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191881/ERR1191881_2.fastq.gz 2651666 WGS GPS_MA_82-sc-2279579 RANDOM 55337413;54566398 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191881/ERR1191881_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191881/ERR1191881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191881/17794_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191881/17794_7#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191881/ERR1191881_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191881/ERR1191881_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191881/17794_7#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191881/17794_7#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84341239;4385 ERS725011 ERX1265265 GENOMIC 14934762 331458250 2015-12-17 SC_RUN_17794_7#59 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191881/17794_7#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191881/17794_7#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#59 ERR997602 SC_EXP_16399_6#61 220 0a37cd789a10c15484a2bcde2fbcb089;6f92e837e379efdc8a87f63f121d2e61 1313 4b8600319c150347fe4621987e5b22e5;4744937defc291e544670cc858abbaaf SAMEA3309640 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997602/ERR997602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997602/ERR997602_2.fastq.gz 5496122 WGS GPS_GM_1659-sc-2206443 RANDOM 184697464;192534946 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997602/ERR997602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997602/ERR997602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997602/16399_6#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997602/16399_6#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997602/ERR997602_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997602/ERR997602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997602/16399_6#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997602/16399_6#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307394971;8870 ERS686102 ERX1076638 GENOMIC 13835420 549612200 2015-09-04 SC_RUN_16399_6#61 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997602/16399_6#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997602/16399_6#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#61 ERR997550 SC_EXP_16399_6#9 220 6ace965fad6f603cc2fb9f6d41852f07;78207601c0dfc76ca6c067fa06f07203 1313 9ac2349b15c5d6787fa484e9592ffd81;d968a35b46cd7beb673120d4b39da0cb SAMEA3309586 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997550/ERR997550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997550/ERR997550_2.fastq.gz 6027556 WGS GPS_GM_1605-sc-2206388 RANDOM 202336916;209336707 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997550/ERR997550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997550/ERR997550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997550/16399_6#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997550/16399_6#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997550/ERR997550_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997550/ERR997550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997550/16399_6#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997550/16399_6#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 336731478;9707 ERS686048 ERX1076586 GENOMIC 13835366 602755600 2015-09-04 SC_RUN_16399_6#9 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997550/16399_6#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997550/16399_6#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#9 ERR980115 SC_EXP_16288_5#77 218 11b007e1cd6ba0f7d53738445ff152c2;8db512afa42cff21987f782680c88796 1313 717fcf1f4cf8551197e6ef2741bd168b;f6b98792b044b4048f9f2a288bd6335e SAMEA3232586 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980115/ERR980115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980115/ERR980115_2.fastq.gz 4500504 WGS GPS_NP_3211-sc-2205504 RANDOM 152730841;152349801 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980115/ERR980115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980115/ERR980115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980115/16288_5#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980115/16288_5#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980115/ERR980115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980115/ERR980115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980115/16288_5#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980115/16288_5#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248883777;7320 ERS653797 ERX1056987 GENOMIC 13296387 450050400 2015-08-12 SC_RUN_16288_5#77 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980115/16288_5#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980115/16288_5#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#77 ERR980093 SC_EXP_16288_5#55 218 8a815b59bd5fa03ddba9a03ff02b47e6;acc219df2736104f95742a0d5399deb6 1313 df20a4743e12e19b49d793a73c7619e8;862694ce7f039cce7df22e2cf92fd200 SAMEA3232564 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980093/ERR980093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980093/ERR980093_2.fastq.gz 4678516 WGS GPS_NP_3048-sc-2205482 RANDOM 161654135;161123890 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980093/ERR980093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980093/ERR980093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980093/16288_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980093/16288_5#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980093/ERR980093_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980093/ERR980093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980093/16288_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980093/16288_5#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261595550;7491 ERS653775 ERX1056965 GENOMIC 13296408 467851600 2015-08-12 SC_RUN_16288_5#55 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980093/16288_5#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980093/16288_5#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#55 ERR980071 SC_EXP_16288_5#32 218 84a2bb655a0978e2a1861e3c3f7f7f14;e042234ea035e52c3052af649d19e27d 1313 3c4d3bbde072bcff0fc1deca2fec06c0;3a3d192e8ceaaa5d8b79ce8263ede83e SAMEA3232541 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980071/ERR980071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980071/ERR980071_2.fastq.gz 5069358 WGS GPS_NP_4138-sc-2205459 RANDOM 175908569;176458132 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980071/ERR980071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980071/ERR980071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980071/16288_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980071/16288_5#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980071/ERR980071_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980071/ERR980071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980071/16288_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980071/16288_5#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286749062;7999 ERS653752 ERX1056943 GENOMIC 13296417 506935800 2015-08-12 SC_RUN_16288_5#32 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980071/16288_5#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980071/16288_5#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#32 ERR908970 SC_EXP_15841_2#26 229 d0de1ae1385a2d0a9ddd8d197d9d3c9a;dea1eabc375686bbcda691023bcdb3f2 1313 30ad027ed4a008e211ca1e5d665fc315;a76798a80b325afadefd4a12f79b8b63 SAMEA3207219 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908970/ERR908970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908970/ERR908970_2.fastq.gz 5141480 WGS GPS_ZA_carriage_SP586-sc-2192157 RANDOM 164113117;169581490 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908970/ERR908970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908970/ERR908970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908970/15841_2#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908970/15841_2#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908970/ERR908970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908970/ERR908970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908970/15841_2#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908970/15841_2#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269090258;8291 ERS639229 ERX988225 GENOMIC 13265095 514148000 2015-06-09 SC_RUN_15841_2#26 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908970/15841_2#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908970/15841_2#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#26 ERR862364 SC_EXP_15378_3#11 191 b31ce1e736f4249699575b379b4ebb6d;d533f264464a144eeb8f94b104ba9bcb 1313 923768da525f541b2c7391f595117650;22ef94088143bac423b042f3dce65f8a SAMEA3171046 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862364/ERR862364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862364/ERR862364_2.fastq.gz 3663574 WGS GPS_MW_3451-sc-2139608 RANDOM 126726391;130666909 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862364/ERR862364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862364/ERR862364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862364/15378_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862364/15378_3#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862364/ERR862364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862364/ERR862364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862364/15378_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862364/15378_3#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 210141210;5964 ERS625437 ERX942014 GENOMIC 12815411 366357400 2015-04-21 SC_RUN_15378_3#11 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862364/15378_3#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862364/15378_3#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#11 ERR774025 SC_EXP_14913_4#23 230 509980e73b584629175a51a9e412b2e8;cf96e6d577b92244c6cd642ca92ceae2 1313 c0e2edddc04e04b64fb02f65331f7230;8e750ea9ea13ca94c619324ad47eff8b SAMEA2814048 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774025/ERR774025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774025/ERR774025_2.fastq.gz 4851780 WGS GPS_ZA_2350-sc-2022532 RANDOM 161261861;169211259 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774025/ERR774025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774025/ERR774025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774025/14913_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774025/14913_4#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774025/ERR774025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774025/ERR774025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774025/14913_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774025/14913_4#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270119735;7810 ERS566416 ERX716904 GENOMIC 12396055 485178000 2015-03-03 SC_RUN_14913_4#23 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774025/14913_4#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774025/14913_4#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#23 ERR862469 SC_EXP_15378_4#21 205 749093d30c948ff57126bfbf68df8ae8;b345a1912ac09b9f80d861a69fb345d9 1313 c62b5b4ed51e1ea92c86edc605dfa7e3;bc6c1c90c6d5280067223d020b077c34 SAMEA3171153 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862469/ERR862469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862469/ERR862469_2.fastq.gz 3461846 WGS GPS_MW_1090-sc-2139716 RANDOM 117157869;120103348 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862469/ERR862469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862469/ERR862469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862469/15378_4#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862469/15378_4#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862469/ERR862469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862469/ERR862469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862469/15378_4#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862469/15378_4#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 192270280;5614 ERS625544 ERX942119 GENOMIC 12826915 346184600 2015-04-21 SC_RUN_15378_4#21 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862469/15378_4#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862469/15378_4#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#21 ERR714543 SC_EXP_14412_1#6 235 df882916e5133816ade0e61041e9a1ba;01dbf3a734cbbf2f16e780a10ea94b9a 1313 bfe86f20b9ec239263851e19c1d6eb5b;c349e5bb60680eac6b60d685b68c744e SAMEA2658596 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714543/ERR714543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714543/ERR714543_2.fastq.gz 5929754 WGS GPS_ZA_1668-sc-2021204 RANDOM 212987087;215991602 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714543/ERR714543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714543/ERR714543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714543/14412_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714543/14412_1#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714543/ERR714543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714543/ERR714543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714543/14412_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714543/14412_1#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 354511706;9668 ERS508624 ERX658465 GENOMIC 11839082 592975400 2015-01-08 SC_RUN_14412_1#6 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714543/14412_1#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714543/14412_1#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#6 ERR742540 SC_EXP_14673_3#38 214 d8a2e6f2e1e9cdd8d076bb189816ba84;10314a9d5d60563e9f86d2bcca651976 1313 eec8199b115cc7789cc1ed2591310088;3509fa6229165b75f5343f24fc7c05e3 SAMEA2796636 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742540/ERR742540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742540/ERR742540_2.fastq.gz 4866976 WGS GPS_US_8423_05-sc-2138617 RANDOM 156152597;161693642 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742540/ERR742540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742540/ERR742540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742540/14673_3#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742540/14673_3#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742540/ERR742540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742540/ERR742540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742540/14673_3#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742540/14673_3#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257082508;7857 ERS558247 ERX686223 GENOMIC 12061936 486697600 2015-01-27 SC_RUN_14673_3#38 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742540/14673_3#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742540/14673_3#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#38 ERR773987 SC_EXP_14913_3#79 225 6169d29209c86c917546430c67914f7e;46f54a1797718b8fcd595c2b5ff72917 1313 a9c01e941070b3e0848100d1a4f6b6f2;d0a7ecdec490b0128a9cce1579b4a37a SAMEA2814085 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773987/ERR773987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773987/ERR773987_2.fastq.gz 4051450 WGS GPS_ZA_2216-sc-2022569 RANDOM 136145232;141912353 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773987/ERR773987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773987/ERR773987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773987/14913_3#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773987/14913_3#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773987/ERR773987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773987/ERR773987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773987/14913_3#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773987/14913_3#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226963282;6543 ERS566453 ERX716866 GENOMIC 12345991 405145000 2015-03-03 SC_RUN_14913_3#79 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773987/14913_3#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773987/14913_3#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#79 ERR730791 SC_EXP_14566_5#31 233 6e9819e0c3832c0e842c2ff5092dba7a;b1bd9d195f28e8e55a47a4e14ccb84dd 1313 8a80e498b9f21b28bd1965a0e094495f;c98e6f051c845edea9aef4fd67966840 SAMEA2658682 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730791/ERR730791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730791/ERR730791_2.fastq.gz 4078888 WGS GPS_ZA_1788-sc-2021290 RANDOM 115337447;116923463 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730791/ERR730791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730791/ERR730791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730791/14566_5#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730791/14566_5#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730791/ERR730791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730791/ERR730791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730791/14566_5#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730791/14566_5#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 187070351;6695 ERS508710 ERX674737 GENOMIC 11839000 407888800 2015-01-14 SC_RUN_14566_5#31 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730791/14566_5#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730791/14566_5#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#31 ERR742487 SC_EXP_14673_2#75 220 21346d1ae39983d91d526b5e0fae0032;a7cc46873181e5562c39815740e3d77e 1313 8a31e17165679d5850cc462846a94d67;24faa9861155437bc0d53e4099536b67 SAMEA2796578 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742487/ERR742487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742487/ERR742487_2.fastq.gz 4816166 WGS GPS_US_4848_02-sc-2138558 RANDOM 150382175;155022378 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742487/ERR742487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742487/ERR742487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742487/14673_2#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742487/14673_2#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742487/ERR742487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742487/ERR742487_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742487/14673_2#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742487/14673_2#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247015034;7754 ERS558189 ERX686170 GENOMIC 12061808 481616600 2015-01-27 SC_RUN_14673_2#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742487/14673_2#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742487/14673_2#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#75 ERR714438 SC_EXP_14410_7#81 220 14d90ecf66a064c51157289956409a33;e4aba9f6e9aa0be1b4022adf109ec6b6 1313 ab0ff5c8a6268b81ee5723f8aaac5f58;4bc6e289dcc7b1c16a58952114d04382 SAMEA2627540 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714438/ERR714438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714438/ERR714438_2.fastq.gz 5550702 WGS GPS_GM_0514-sc-2003506 RANDOM 189866285;190249832 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714438/ERR714438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714438/ERR714438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714438/14410_7#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714438/14410_7#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714438/ERR714438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714438/ERR714438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714438/14410_7#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714438/14410_7#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 311922088;9242 ERS497439 ERX658360 GENOMIC 11883159 555070200 2015-01-08 SC_RUN_14410_7#81 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714438/14410_7#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714438/14410_7#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#81 ERR600543 SC_EXP_13415_6#43 231 6afbce2e44260ffe580ebd4f1233f7b6;60bf8544e0410662d3e936f62cadb943 1313 0ab0b112fbe1a821933de02729721c35;64e1f0eb655e67a427ecb1ff68c437e5 SAMEA2554058 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600543/ERR600543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600543/ERR600543_2.fastq.gz 4994196 WGS GPS_ZA_947-sc-1951094 RANDOM 163632149;169039210 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600543/ERR600543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600543/ERR600543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600543/13415_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600543/13415_6#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600543/ERR600543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600543/ERR600543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600543/13415_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600543/13415_6#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273208714;8254 ERS464559 ERX557372 GENOMIC 10631304 499419600 2014-09-16 SC_RUN_13415_6#43 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600543/13415_6#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600543/13415_6#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#43 ERR632952 SC_EXP_13414_8#85 241 fe8a51eee2e5a30839fffcebe6596765;f65799575ac12a667730ce73daafbb45 1313 d9e7518d528c2d8ca313aa3bff2208cf;5474e5d35b7f10d0d4ab83e5d62e178b SAMEA2553766 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632952/ERR632952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632952/ERR632952_2.fastq.gz 4021518 WGS GPS_ZA_702-sc-1950846 RANDOM 130531228;134773747 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632952/ERR632952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632952/ERR632952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632952/13414_8#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632952/13414_8#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632952/ERR632952_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632952/ERR632952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632952/13414_8#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632952/13414_8#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 217761743;6626 ERS464267 ERX589506 GENOMIC 10631139 402151800 2014-09-23 SC_RUN_13414_8#85 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632952/13414_8#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632952/13414_8#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#85 ERR600356 SC_EXP_13415_4#46 250 239a6e761e342d1a8357a6b7b5895786;5b46fbfa03a4926f9aba645967a48889 1313 73049810d76a590e959c1da856451ab6;0576732ea8a205ff1b8746d7ca2f7368 SAMEA2553822 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600356/ERR600356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600356/ERR600356_2.fastq.gz 4146042 WGS GPS_ZA_758-sc-1950903 RANDOM 131603418;137037520 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600356/ERR600356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600356/ERR600356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600356/13415_4#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600356/13415_4#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600356/ERR600356_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600356/ERR600356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600356/13415_4#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600356/13415_4#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 220787836;6797 ERS464323 ERX557185 GENOMIC 10631243 414604200 2014-09-16 SC_RUN_13415_4#46 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600356/13415_4#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600356/13415_4#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#46 ERR600383 SC_EXP_13415_4#74 250 7c642a0b2141f3d30a5db0e2af5272c3;a2030d21af7d63eea16556bc2d4b11a8 1313 9d8a3ca76436f8b8050b64b1bbead5b5;79397806f7422dff9cb9ff83a2e68d19 SAMEA2553850 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600383/ERR600383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600383/ERR600383_2.fastq.gz 4326426 WGS GPS_ZA_786-sc-1950931 RANDOM 136770344;141568117 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600383/ERR600383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600383/ERR600383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600383/13415_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600383/13415_4#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600383/ERR600383_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600383/ERR600383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600383/13415_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600383/13415_4#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 229761853;7127 ERS464351 ERX557212 GENOMIC 10631199 432642600 2014-09-16 SC_RUN_13415_4#74 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600383/13415_4#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600383/13415_4#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#74 ERR568648 SC_EXP_12837_3#45 231 9aae52479fe548ffb196491e3a7715a4;dadc3504c0c9cd05c94cb401067b35da 1313 d096a9ab971f8c1f2f8a43ba5bf7aa6f;38e7180b5a96bd3a7429cbbd42548d49 SAMEA2434633 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568648/ERR568648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568648/ERR568648_2.fastq.gz 4988090 WGS SA_GPS_SP528-sc-1895698 RANDOM 161201600;163636189 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568648/ERR568648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568648/ERR568648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568648/12837_3#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568648/12837_3#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568648/ERR568648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568648/ERR568648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568648/12837_3#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568648/12837_3#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267617779;8241 ERS428810 ERX527637 GENOMIC 9986343 498809000 2014-07-23 SC_RUN_12837_3#45 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568648/12837_3#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568648/12837_3#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#45 ERR461273 SC_EXP_11860_7#84 206 1914d6fa43392ac0a2783f27e4dfcbd5;db252ca6920225a1c583be5841818230 1313 d47abf7513b054133895f7b75a238512;174f128cbd8f2b66bff69cfece966a71 SAMEA2239123 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461273/ERR461273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461273/ERR461273_2.fastq.gz 4764972 WGS 2000290-sc-2013-11-05T12:08:18Z-1750493 RANDOM 154754719;162620977 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461273/ERR461273_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461273/ERR461273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461273/11860_7#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461273/11860_7#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461273/ERR461273_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461273/ERR461273_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461273/11860_7#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461273/11860_7#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 260940625;7674 ERS367935 ERX427614 GENOMIC 9014922 476497200 2014-03-18 SC_RUN_11860_7#84 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461273/11860_7#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461273/11860_7#84.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#84 ERR460950 SC_EXP_11860_4#35 217 127e1be9eec1735a3466faaa859902ab;5e3615914da25ccfc11d84c04245b9cc 1313 17ce0e7de4d6a299628fa845f8f0be30;f402b4959ca4064726579523c923c0a4 SAMEA2238309 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460950/ERR460950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460950/ERR460950_2.fastq.gz 4446942 WGS 2061274-sc-2013-11-05T11:54:22Z-1749667 RANDOM 145356144;156377184 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460950/ERR460950_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460950/ERR460950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460950/11860_4#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460950/11860_4#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460950/ERR460950_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460950/ERR460950_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460950/11860_4#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460950/11860_4#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 249142366;7272 ERS367121 ERX427291 GENOMIC 9012464 444694200 2014-03-18 SC_RUN_11860_4#35 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460950/11860_4#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460950/11860_4#35.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#35 ERR063930 SC_EXP_6925_4#1 237 33613cf3334f0bbb7eaf6cfbb67ab10a 1313 40f1b91efce82af7ad6d9eccd09a6054;b047d8d3942128baca94f3741fea87a2 SAMEA1025698 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063930/ERR063930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063930/ERR063930_2.fastq.gz 5086356 WGS SMRU2137-sc-2011-01-27-1062350 RANDOM 308183891;322018389 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063930/ERR063930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063930/ERR063930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063930/6925_4#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063930/ERR063930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063930/ERR063930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063930/6925_4#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 790440609 ERS021647 ERX041903 GENOMIC 3610932 762953400 2012-01-05 SC_RUN_6925_4#1 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063930/6925_4#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR449218 SC_EXP_11826_1#30 238 b174a9481d81668c856caeada9ce5f8f;e62c834f7611cd69f97fe89013b1c44b 1313 efa7bce8a3a54fa6ab9c259eb8a120cd;f0a0e35e4b524163bd263b19c2c1e77b SAMEA2144660 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449218/ERR449218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449218/ERR449218_2.fastq.gz 3942304 WGS 0074_99-sc-2013-07-03T13:32:43Z-1659302 RANDOM 129249951;133467337 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449218/ERR449218_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449218/ERR449218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449218/11826_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449218/11826_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449218/ERR449218_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449218/ERR449218_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449218/11826_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449218/11826_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 215666074;6484 ERS322475 ERX415590 GENOMIC 8949157 394230400 2014-03-04 SC_RUN_11826_1#30 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449218/11826_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449218/11826_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#30 ERR069695 SC_EXP_6999_1#13 243 d4d2dbbcc5ca77288e5b062cc0a8e2b2 1313 c1d5f8aa221579501abe9d4e6ab3a24d;84b751f30788b00046d75ceac9f86df0 SAMEA1032684 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069695/ERR069695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069695/ERR069695_2.fastq.gz 5191866 WGS 3196-sc-2011-08-01T09:44:33Z-1250066 RANDOM 300306966;294022499 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069695/ERR069695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069695/ERR069695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069695/6999_1#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069695/ERR069695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069695/ERR069695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069695/6999_1#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 762269599 ERS044001 ERX047548 GENOMIC 3736914 778779900 2012-01-19 SC_RUN_6999_1#13 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069695/6999_1#13.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR2089855 SC_EXP_22114_6#67 455 9426ca35c46a6d230f9f82aa0370230b;3c5d48deff9ccd1708ea8a7c2ddbce49 1313 75519df20302c1792a438d5e6f9d36ef;b9efadd65ce9c76e63b8fde1356375c1 SAMEA104155043 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089855/ERR2089855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089855/ERR2089855_2.fastq.gz 2003778 WGS 8fd1b310-c37a-11e6-b158-3c4a9275d6c8 RANDOM 45636509;43744350 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089855/ERR2089855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089855/ERR2089855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089855/22114_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089855/22114_6#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089855/ERR2089855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089855/ERR2089855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089855/22114_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089855/22114_6#67.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 62285057;3392 ERS1814061 ERX2146649 GENOMIC DN478829S:C9 250472250 2017-08-08 SC_RUN_22114_6#67 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089855/22114_6#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089855/22114_6#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#67 ERR2089404 SC_EXP_21999_7#142 471 7f99852359d2e76234738bceeaa4aa6d;5eb314047f83f2f95f97af1138f34a4b 1313 6410daf5db58e36185e6e13d559da4e0;b184c1596f6aefa811f7a51e56849231 SAMEA104154669 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089404/ERR2089404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089404/ERR2089404_2.fastq.gz 2161434 WGS 67430250-c37a-11e6-b158-3c4a9275d6c8 RANDOM 43739548;47702874 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089404/ERR2089404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089404/ERR2089404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089404/21999_7#142.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089404/21999_7#142.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089404/ERR2089404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089404/ERR2089404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089404/21999_7#142.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089404/21999_7#142.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63512868;3673 ERS1813687 ERX2146198 GENOMIC DN476874P:G6 270179250 2017-08-08 SC_RUN_21999_7#142 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089404/21999_7#142.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089404/21999_7#142.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#142 ERR1788433 SC_EXP_21127_2#48 445 01a9781e1279b2403d45f923e480b939;46b8beccfd14ff62ef312197ab895cef 1313 0d23586ebdf31cc017f477577ae3f13e;c9603b6b8e40039a16af12ad80a7916a SAMEA4388050 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788433/ERR1788433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788433/ERR1788433_2.fastq.gz 2495756 WGS 3ff78290-5a14-11e6-af69-3c4a9275d6c8 RANDOM 53891296;52317751 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788433/ERR1788433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788433/ERR1788433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788433/21127_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788433/21127_2#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/003/ERR1788433/ERR1788433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/003/ERR1788433/ERR1788433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788433/21127_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788433/21127_2#48.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76974786;4202 ERS1299499 ERX1852156 GENOMIC DN465286P:H6 311969500 2017-01-11 SC_RUN_21127_2#48 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788433/21127_2#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788433/21127_2#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#48 ERR1214412 SC_EXP_18090_1#92 448 5bde41c9f9a2008d183337d98e9e63d6;04d5f0ead0f3414bec34421280f86cb8 1313 e709b5c7cf66bc9458722d622f84751b;3c51c7d5692d9b72c4ec22d2d8f353fa SAMEA3431351 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/002/ERR1214412/ERR1214412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/002/ERR1214412/ERR1214412_2.fastq.gz 2603964 WGS GPS_US_PATH405-sc-2296523 RANDOM 52103371;55241214 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/002/ERR1214412/ERR1214412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/002/ERR1214412/ERR1214412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214412/18090_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214412/18090_1#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/002/ERR1214412/ERR1214412_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/002/ERR1214412/ERR1214412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214412/18090_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214412/18090_1#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76527392;4393 ERS740636 ERX1286625 GENOMIC 15034959 325495500 2016-01-19 SC_RUN_18090_1#92 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214412/18090_1#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214412/18090_1#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#92 ERR1065654 SC_EXP_17150_4#15 458 07466efc2ed3437956fb09d5f602b59f;2b849a1794cf299199882211b961a08f 1313 091be7662831e1f3a306dbd686eccee8;078d92dac7600ece7ee53f26213caf9a SAMEA3353558 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065654/ERR1065654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065654/ERR1065654_2.fastq.gz 5397872 WGS GPS_ZA_carriage_SP1531-sc-2278160 RANDOM 109781890;106314047 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065654/ERR1065654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065654/ERR1065654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065654/17150_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065654/17150_4#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065654/ERR1065654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065654/ERR1065654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065654/17150_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065654/17150_4#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 166145229;8754 ERS707913 ERX1145804 GENOMIC 14436467 674734000 2015-10-13 SC_RUN_17150_4#15 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065654/17150_4#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065654/17150_4#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#15 ERR1065455 SC_EXP_17138_3#65 472 22f703be1184e1cbc8b02e2ff79c49e0;b24f03c6504d577162e3cc91cff35430 1313 0b1ab5ed256d42fde08c5bb592af0143;7012362f5643b8ca58849c3913cebcbe SAMEA3354215 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065455/ERR1065455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065455/ERR1065455_2.fastq.gz 5433946 WGS GPS_ZA_carriage_SP1955-sc-2278823 RANDOM 118878058;114633699 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065455/ERR1065455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065455/ERR1065455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065455/17138_3#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065455/17138_3#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065455/ERR1065455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065455/ERR1065455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065455/17138_3#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065455/17138_3#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 179575189;8893 ERS708570 ERX1145605 GENOMIC 14438261 679243250 2015-10-13 SC_RUN_17138_3#65 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065455/17138_3#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065455/17138_3#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#65 ERR908993 SC_EXP_15841_2#49 229 a4cc95ac2db471c828c6a35bb4972ecc;47ff5a5e0173682c9d8df14d7cb7a6ed 1313 8d07f2d0b8bf5a938d781ade5c428249;67af01af453eb6548301108c2e5783c4 SAMEA3207245 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908993/ERR908993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908993/ERR908993_2.fastq.gz 4914324 WGS GPS_ZA_carriage_SP577-sc-2192183 RANDOM 159238021;165302298 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908993/ERR908993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908993/ERR908993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908993/15841_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908993/15841_2#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908993/ERR908993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908993/ERR908993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908993/15841_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908993/15841_2#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263230259;7814 ERS639255 ERX988248 GENOMIC 13265086 491432400 2015-06-09 SC_RUN_15841_2#49 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908993/15841_2#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908993/15841_2#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#49 ERR925102 SC_EXP_15995_1#77 231 227336bcc791a39557a81c50e4d59834;1b107be1198b6598b1fe73d9d8081a68 1313 488734b26ff131be49f749fc193979d3;c17a45469812f6ecc9d4f1da7ba8e740 SAMEA3206892 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925102/ERR925102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925102/ERR925102_2.fastq.gz 1604386 WGS GPS_ZA_carriage_SP153-sc-2191827 RANDOM 49682473;51221188 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925102/ERR925102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925102/ERR925102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925102/15995_1#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925102/15995_1#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925102/ERR925102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925102/ERR925102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925102/15995_1#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925102/15995_1#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81653093;2707 ERS638902 ERX1004377 GENOMIC 13241025 160438600 2015-06-23 SC_RUN_15995_1#77 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925102/15995_1#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925102/15995_1#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#77 ERR884417 SC_EXP_15682_2#24 211 4968bfd4392b0bfbba1f92a2741a6361;0f49878ae0ca168d0cd797a5f2cfcc58 1313 22b63321d10a22a14d1a51553e3763aa;2072df86434947718ad718160c015903 SAMEA3176139 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884417/ERR884417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884417/ERR884417_2.fastq.gz 6083998 WGS GPS_PL_4094_12-sc-2191198 RANDOM 197548252;203455994 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884417/ERR884417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884417/ERR884417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884417/15682_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884417/15682_2#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884417/ERR884417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884417/ERR884417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884417/15682_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884417/15682_2#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325805515;9674 ERS629087 ERX963820 GENOMIC 13029687 608399800 2015-05-21 SC_RUN_15682_2#24 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884417/15682_2#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884417/15682_2#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_2#24 ERR876613 SC_EXP_15608_3#88 211 e58253dce416ebdd2210c39eb6a26194;0b77be6524005756de2714b92759ed53 1313 0befc6f717c330883a655d0fc474b2c1;73b25fe24ef44d2a1183fc7b0ffdb3d1 SAMEA3175841 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876613/ERR876613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876613/ERR876613_2.fastq.gz 5099694 WGS GPS_SI_864_P-sc-2190880 RANDOM 156779068;161689089 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876613/ERR876613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876613/ERR876613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876613/15608_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876613/15608_3#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876613/ERR876613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876613/ERR876613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876613/15608_3#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876613/15608_3#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256132774;8228 ERS628789 ERX956176 GENOMIC 13024356 509969400 2015-05-12 SC_RUN_15608_3#88 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876613/15608_3#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876613/15608_3#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_3#88 ERR876512 SC_EXP_15608_2#82 215 8a75a6130f4662405e735c0976ef5278;817b8e8e7fa270558e1967149d85a3d7 1313 90d22d249320dfdd7ccd5a3c7a2ad712;c9dcd5d2016ff59b9da7fae35934b3e5 SAMEA3175727 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876512/ERR876512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876512/ERR876512_2.fastq.gz 5798078 WGS GPS_US_2483_99_R1-sc-2190776 RANDOM 176850487;186548586 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876512/ERR876512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876512/ERR876512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876512/15608_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876512/15608_2#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876512/ERR876512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876512/ERR876512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876512/15608_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876512/15608_2#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294483934;9376 ERS628675 ERX956075 GENOMIC 13024187 579807800 2015-05-12 SC_RUN_15608_2#82 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876512/15608_2#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876512/15608_2#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#82 ERR773857 SC_EXP_14913_2#43 226 0915e6179a6c528d0efe8008346029ab;1efc1aa756d5e8f4c7589598e94bc5d2 1313 f17ae14864970b9f11ef2e141018ade0;32f78da5900adb3a2c9f2272d6020e85 SAMEA2814073 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773857/ERR773857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773857/ERR773857_2.fastq.gz 4466704 WGS GPS_ZA_2275-sc-2022557 RANDOM 150778346;157606300 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773857/ERR773857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773857/ERR773857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773857/14913_2#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773857/14913_2#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773857/ERR773857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773857/ERR773857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773857/14913_2#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773857/14913_2#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251578880;7150 ERS566441 ERX716736 GENOMIC 12395913 446670400 2015-03-03 SC_RUN_14913_2#43 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773857/14913_2#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773857/14913_2#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#43 ERR773821 SC_EXP_14913_2#7 226 56ee938d378816fcad4ac9f5de7f1fd5;c3b9f61cac63bc556cb80fa1d717bc86 1313 ddb722320b0981cbf6a4a1d30015b676;ca4f965251400168f8514ce86622f824 SAMEA2813985 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773821/ERR773821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773821/ERR773821_2.fastq.gz 4856246 WGS GPS_ZA_2239-sc-2022469 RANDOM 162471687;169157110 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773821/ERR773821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773821/ERR773821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773821/14913_2#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773821/14913_2#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773821/ERR773821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773821/ERR773821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773821/14913_2#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773821/14913_2#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 271736836;7786 ERS566353 ERX716700 GENOMIC 12395956 485624600 2015-03-03 SC_RUN_14913_2#7 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773821/14913_2#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773821/14913_2#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#7 ERR774180 SC_EXP_14913_5#86 225 2e84400c665a5991c8208a0130939a62;e7e870f67b64f124a9c6fc5c0ced898f 1313 d286128433de18d5a0d1d041d48e6f7d;e09ba3225bf9aee2a5c5685f55f413f5 SAMEA2814486 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774180/ERR774180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774180/ERR774180_2.fastq.gz 5676888 WGS GPS_ZA_2698-sc-2138281 RANDOM 190363534;199508484 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774180/ERR774180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774180/ERR774180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774180/14913_5#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774180/14913_5#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774180/ERR774180_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774180/ERR774180_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774180/14913_5#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774180/14913_5#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320730493;9018 ERS566854 ERX717059 GENOMIC 12403437 567688800 2015-03-03 SC_RUN_14913_5#86 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774180/14913_5#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774180/14913_5#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#86 ERR742360 SC_EXP_14673_1#31 214 be1a02be374d3651a6a452e819af2d53;35c1f49beb6905d415681003aeddadd8 1313 78aeee95fa6ea83e6939e56989ba80f1;56473610854525042e2d7fa23bd40c10 SAMEA2796439 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742360/ERR742360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742360/ERR742360_2.fastq.gz 5396306 WGS GPS_US_5186_02-sc-2138418 RANDOM 170578159;172488036 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742360/ERR742360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742360/ERR742360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742360/14673_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742360/14673_1#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742360/ERR742360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742360/ERR742360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742360/14673_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742360/14673_1#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278809549;8703 ERS558050 ERX686043 GENOMIC 12061753 539630600 2015-01-27 SC_RUN_14673_1#31 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742360/14673_1#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742360/14673_1#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#31 ERR742350 SC_EXP_14673_1#17 214 5f5e955bd4cea800ef0b27ed09463b56;732be51d6bdcce718655ac90e62c0aba 1313 53dab63e80758841a050ccc1965cf86b;ee219c43a762f63ede45c8163342eafa SAMEA2796425 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742350/ERR742350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742350/ERR742350_2.fastq.gz 6134058 WGS GPS_US_2009216553-sc-2138404 RANDOM 194339208;195273492 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742350/ERR742350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742350/ERR742350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742350/14673_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742350/14673_1#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742350/ERR742350_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742350/ERR742350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742350/14673_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742350/14673_1#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 316143121;9892 ERS558036 ERX686033 GENOMIC 12061680 613405800 2015-01-27 SC_RUN_14673_1#17 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742350/14673_1#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742350/14673_1#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#17 ERR730654 SC_EXP_14555_4#84 208 f8beb709c05f0a4b4a1bcf70da32dc2d;5b7a3e7f7a392c452e8e342aaf58bb63 1313 0a839983ed010854d16d39a1d2350516;a19a773a2027651e5bd9a5a67785d554 SAMEA2659085 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730654/ERR730654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730654/ERR730654_2.fastq.gz 4463194 WGS GPS_ZA_2126-sc-2021722 RANDOM 134191943;138371355 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730654/ERR730654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730654/ERR730654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730654/14555_4#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730654/14555_4#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730654/ERR730654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730654/ERR730654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730654/14555_4#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730654/14555_4#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 223642214;7246 ERS509113 ERX674600 GENOMIC 11814946 446319400 2015-01-14 SC_RUN_14555_4#84 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730654/14555_4#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730654/14555_4#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#84 ERR714430 SC_EXP_14410_7#73 220 2f2b921ab093f1cddfc378fee36c393b;cccdcab98110f1e98546234fc65d47d0 1313 7ff0bef0eb510e536fbf3f513c2e5f64;606235eeb8e640520a01f20608e3254d SAMEA2627530 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714430/ERR714430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714430/ERR714430_2.fastq.gz 5274300 WGS GPS_GM_0506-sc-2003488 RANDOM 183635578;184367888 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714430/ERR714430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714430/ERR714430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714430/14410_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714430/14410_7#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714430/ERR714430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714430/ERR714430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714430/14410_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714430/14410_7#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300921185;8656 ERS497429 ERX658352 GENOMIC 11883158 527430000 2015-01-08 SC_RUN_14410_7#73 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714430/14410_7#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714430/14410_7#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#73 ERR632927 SC_EXP_13414_8#60 241 61aa1992afa878c949540ac63d06edf0;4f19023d0aa34ae8f498fd44ce4688f6 1313 176efd10f553190632c4a77cc533ab05;02f48f0c3715c05f258bda0dc37857b7 SAMEA2553741 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632927/ERR632927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632927/ERR632927_2.fastq.gz 4234434 WGS GPS_ZA_677-sc-1950821 RANDOM 137823381;141926871 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632927/ERR632927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632927/ERR632927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632927/13414_8#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632927/13414_8#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632927/ERR632927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632927/ERR632927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632927/13414_8#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632927/13414_8#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 229605620;6954 ERS464242 ERX589481 GENOMIC 10631124 423443400 2014-09-23 SC_RUN_13414_8#60 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632927/13414_8#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632927/13414_8#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#60 ERR600569 SC_EXP_13415_6#70 231 dc341c6a964f148d03bbf38d0b9f70ab;1d3c095b3fc6ad77068c88fa57e6153e 1313 81d3d435fdb72ca804522ee84f10083a;ffa8f4aaa40d4fa727fedecf5b5f79a7 SAMEA2554085 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600569/ERR600569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600569/ERR600569_2.fastq.gz 4297794 WGS GPS_ZA_974-sc-1951121 RANDOM 142932517;147180392 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600569/ERR600569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600569/ERR600569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600569/13415_6#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600569/13415_6#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600569/ERR600569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600569/ERR600569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600569/13415_6#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600569/13415_6#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238396010;7022 ERS464586 ERX557398 GENOMIC 10631343 429779400 2014-09-16 SC_RUN_13415_6#70 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600569/13415_6#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600569/13415_6#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#70 ERR570429 SC_EXP_12837_5#28 238 2ef39ba02523c8399ea462a3b505bdfa;20c2d1cbe093379313e4fddfe119ea45 1313 e9687fe9ea717b3326fbd57ba13cb965;154cdd24bbfaae006c5fa8b7dc65845f SAMEA2434792 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570429/ERR570429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570429/ERR570429_2.fastq.gz 5839592 WGS SA_GPS_SP687-sc-1895858 RANDOM 194428205;199375717 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570429/ERR570429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570429/ERR570429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570429/12837_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570429/12837_5#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570429/ERR570429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570429/ERR570429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570429/12837_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570429/12837_5#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326088810;9573 ERS428969 ERX529418 GENOMIC 9993253 583959200 2014-07-28 SC_RUN_12837_5#28 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570429/12837_5#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570429/12837_5#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#28 ERR570406 SC_EXP_12837_5#5 238 be7e1853efad671f0ee12b5a3373b40b;4c6a970a19229b92916154e248f5203d 1313 f19022acd82b1bc7dbd6c2ae46dec5e1;153784d7877f90ab108e6c6a4011709e SAMEA2434769 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570406/ERR570406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570406/ERR570406_2.fastq.gz 6567784 WGS SA_GPS_SP664-sc-1895835 RANDOM 218055525;222227288 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570406/ERR570406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570406/ERR570406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570406/12837_5#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570406/12837_5#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570406/ERR570406_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570406/ERR570406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570406/12837_5#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570406/12837_5#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 367777400;10807 ERS428946 ERX529395 GENOMIC 9993262 656778400 2014-07-28 SC_RUN_12837_5#5 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570406/12837_5#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570406/12837_5#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#5 ERR570469 SC_EXP_12837_5#70 238 a54e5800103a695176ad17e83340770a;05fdb9f34cf068e8c362f3a7148e9468 1313 03b92bc19b2173cbc0055b1d6c690031;c6eb22e525ba4e23221a37057efc789a SAMEA2434834 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570469/ERR570469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570469/ERR570469_2.fastq.gz 5404480 WGS SA_GPS_SP295-sc-1895901 RANDOM 178595425;182619567 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570469/ERR570469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570469/ERR570469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570469/12837_5#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570469/12837_5#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570469/ERR570469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570469/ERR570469_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570469/12837_5#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570469/12837_5#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298932256;8970 ERS429011 ERX529458 GENOMIC 9993282 540448000 2014-07-28 SC_RUN_12837_5#70 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570469/12837_5#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570469/12837_5#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#70 ERR568710 SC_EXP_12837_4#24 226 3990be16e159534bfa0f362ede9c64b6;8dbafa513d527322eda1922498610e2c 1313 2beaf90bb336dff46038363a4a02425d;a852ca3b13eefbd77ba446636e07dbfc SAMEA2434700 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568710/ERR568710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568710/ERR568710_2.fastq.gz 5277632 WGS SA_GPS_SP595-sc-1895766 RANDOM 185007313;187928174 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568710/ERR568710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568710/ERR568710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568710/12837_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568710/12837_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568710/ERR568710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568710/ERR568710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568710/12837_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568710/12837_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 309333606;8525 ERS428877 ERX527699 GENOMIC 9986279 527763200 2014-07-23 SC_RUN_12837_4#24 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568710/12837_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568710/12837_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#24 ERR559361 SC_EXP_12718_4#95 233 e490581913bd86270149e5217a90cfa5;fd38a08f7cdd9f04f11960267a9cf7d2 1313 bb90339af08adbe64ec7b3eb4517bc06;7c4608782a1ba4651481be732ef88f07 SAMEA2382830 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559361/ERR559361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559361/ERR559361_2.fastq.gz 5557350 WGS 2061274_II-sc-1870077 RANDOM 181306453;186600037 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559361/ERR559361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559361/ERR559361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559361/12718_4#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559361/12718_4#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559361/ERR559361_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559361/ERR559361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559361/12718_4#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559361/12718_4#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 303643868;8830 ERS409155 ERX518397 GENOMIC 9918351 555735000 2014-07-10 SC_RUN_12718_4#95 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559361/12718_4#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559361/12718_4#95.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#95 ERR559327 SC_EXP_12718_4#61 233 1753e7dbdcf38cbc60bede1806f6c811;565e958f37fac7ff14b71a687e31993b 1313 e4c6f95776b7dbeae600d0f54196dc5b;faf9dd73c0480b39fecd02831e79ca05 SAMEA2382796 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559327/ERR559327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559327/ERR559327_2.fastq.gz 4722870 WGS 2020055_II-sc-1870043 RANDOM 148466825;155372666 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559327/ERR559327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559327/ERR559327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559327/12718_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559327/12718_4#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559327/ERR559327_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559327/ERR559327_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559327/12718_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559327/12718_4#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 250432363;7808 ERS409121 ERX518363 GENOMIC 9918323 472287000 2014-07-10 SC_RUN_12718_4#61 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559327/12718_4#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559327/12718_4#61.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#61 ERR554978 SC_EXP_12673_7#52 217 69c72ea118c9784e54b81049c4709aeb;b65f90ce8888dd80fbd3bacb354bc52d 1313 2e16f6d60110d6351228173d9b2dbc27;69d206d1bc82d5b78266f2c31027d6ec SAMEA2382692 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554978/ERR554978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554978/ERR554978_2.fastq.gz 4767706 WGS 2000290_II-sc-1869938 RANDOM 163875517;182727202 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554978/ERR554978_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554978/ERR554978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554978/12673_7#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554978/12673_7#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554978/ERR554978_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554978/ERR554978_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554978/12673_7#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554978/12673_7#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 287408329;7734 ERS409017 ERX514047 GENOMIC 9799036 476770600 2014-07-02 SC_RUN_12673_7#52 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554978/12673_7#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554978/12673_7#52.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#52 ERR461775 SC_EXP_11861_5#37 221 df57965e4b9bf6a0bca1bbd3c6ea2c4f;1b7670ac42c6326a509859d8fbd67e08 1313 b5268fdabf8d240944fd6e940144bed5;98d98bd0eb81bfa6196c9128638c72bb SAMEA2239263 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461775/ERR461775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461775/ERR461775_2.fastq.gz 4060134 WGS 2012068-sc-2013-11-05T12:10:44Z-1750635 RANDOM 126508956;132772667 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461775/ERR461775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461775/ERR461775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461775/11861_5#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461775/11861_5#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461775/ERR461775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461775/ERR461775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461775/11861_5#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461775/11861_5#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 210833387;6650 ERS368075 ERX428116 GENOMIC 9017867 406013400 2014-03-18 SC_RUN_11861_5#37 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461775/11861_5#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461775/11861_5#37.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR568723 SC_EXP_12837_4#37 226 046f3cc40ee17a2bc5b311c4bdb4a2f7;5855fc4e0f09d1ec429b902989ba4d6d 1313 a3c4a7309ddf2dd3357c2273f273d0d7;8d6d32d39616850ab8a7bece8d1c4403 SAMEA2434713 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568723/ERR568723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568723/ERR568723_2.fastq.gz 5439510 WGS SA_GPS_SP608-sc-1895779 RANDOM 186175969;189036227 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568723/ERR568723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568723/ERR568723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568723/12837_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568723/12837_4#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568723/ERR568723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568723/ERR568723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568723/12837_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568723/12837_4#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 310662602;9014 ERS428890 ERX527712 GENOMIC 9986245 543951000 2014-07-23 SC_RUN_12837_4#37 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568723/12837_4#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568723/12837_4#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#37 ERR461792 SC_EXP_11861_5#55 221 6143c82c264d1a6c61cb7360cf596f58;f494950be4beaf01498231862d60ba04 1313 70279cf525bfed65ce1ffa85bc303cb2;0d8fa8baf188630ee047af8bffe2ed49 SAMEA2239280 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461792/ERR461792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461792/ERR461792_2.fastq.gz 3901338 WGS 2012627-sc-2013-11-05T12:11:00Z-1750653 RANDOM 123471439;129019193 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461792/ERR461792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461792/ERR461792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461792/11861_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461792/11861_5#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461792/ERR461792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461792/ERR461792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461792/11861_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461792/11861_5#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 205876256;6332 ERS368092 ERX428133 GENOMIC 9017893 390133800 2014-03-18 SC_RUN_11861_5#55 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461792/11861_5#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461792/11861_5#55.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR505841 SC_EXP_12291_5#39 230 d3749c79512b3a21f04e95e0e6e3bf1b;6724ee22ad6d4365eb65c6baeffb6607 1313 11478a792e8e9bd1989d030e8faf15a4;c479bb452de7e77dc96888abfc4df998 SAMEA2336061 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505841/ERR505841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505841/ERR505841_2.fastq.gz 3995442 WGS 2279_99-sc-1810990 RANDOM 121895751;126912313 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505841/ERR505841_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505841/ERR505841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505841/12291_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505841/12291_5#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505841/ERR505841_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505841/ERR505841_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505841/12291_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505841/12291_5#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 201936399;6584 ERS394255 ERX471198 GENOMIC 9446452 399544200 2014-05-19 SC_RUN_12291_5#39 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505841/12291_5#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505841/12291_5#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#39 ERR461360 SC_EXP_11860_8#78 222 1b9c061f995c5559a9ada72b4a727c95;9e061c73e6881483bce7905beb6a713f 1313 b333a66abf6dc03d309da0e8d8dac08c;94ded8441897f8f0553fd8f9bd039810 SAMEA2239210 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461360/ERR461360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461360/ERR461360_2.fastq.gz 4201676 WGS 2010052-sc-2013-11-05T12:09:51Z-1750581 RANDOM 133081009;140797693 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461360/ERR461360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461360/ERR461360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461360/11860_8#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461360/11860_8#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461360/ERR461360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461360/ERR461360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461360/11860_8#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461360/11860_8#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 224211149;6888 ERS368022 ERX427701 GENOMIC 9015334 420167600 2014-03-18 SC_RUN_11860_8#78 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461360/11860_8#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461360/11860_8#78.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461384 SC_EXP_11861_1#6 225 eb70f8026a15b3ea2ed60541960aae91;520b9423ff5eaa3f944c639e2ed8e413 1313 7b086fb302b87dc227a91069ef4f7791;ff9e55e94b7787a795e72f134d9e74a6 SAMEA2238569 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461384/ERR461384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461384/ERR461384_2.fastq.gz 3508466 WGS 2081738-sc-2013-11-05T11:58:44Z-1749930 RANDOM 113316051;119639062 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461384/ERR461384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461384/ERR461384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461384/11861_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461384/11861_1#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461384/ERR461384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461384/ERR461384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461384/11861_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461384/11861_1#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 191222444;5801 ERS367381 ERX427725 GENOMIC 9016168 350846600 2014-03-18 SC_RUN_11861_1#6 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461384/11861_1#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461384/11861_1#6.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#6 ERR449116 SC_EXP_11822_1#25 252 22ea1ee97dd9f0b9869681b4c6536fc9;bfc6ccdabc732f89894d6be76527229e 1313 e820d6413c9b3f5cd4ba318495536fc5;95c17eb8c98bc64b625cccda7b32c4f9 SAMEA2149063 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449116/ERR449116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449116/ERR449116_2.fastq.gz 4892046 WGS 0487_00-sc-2013-07-03T13:27:11Z-1659148 RANDOM 160997931;167320815 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449116/ERR449116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449116/ERR449116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449116/11822_1#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449116/11822_1#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449116/ERR449116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449116/ERR449116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449116/11822_1#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449116/11822_1#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 269137040;8098 ERS322327 ERX415488 GENOMIC 8966769 489204600 2014-03-04 SC_RUN_11822_1#25 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449116/11822_1#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449116/11822_1#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_1#25 ERR434047 SC_EXP_11679_1#83 216 d6e42df07d96a67b50af284555f5a479;f1c7af8d1d60177555f35a239805435f 1313 c0cb87d91ed02eef8621b9c9ed283233;c5c86085cb7962c88c62c27dac85dc61 SAMEA2204160 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434047/ERR434047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434047/ERR434047_2.fastq.gz 4324638 WGS PATH3357-sc-2013-10-09T11:56:27Z-1712753 RANDOM 139657560;142074427 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434047/ERR434047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434047/ERR434047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434047/11679_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434047/11679_1#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434047/ERR434047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434047/ERR434047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434047/11679_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434047/11679_1#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 229758712;6951 ERS356671 ERX400322 GENOMIC 8801441 432463800 2014-02-18 SC_RUN_11679_1#83 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434047/11679_1#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434047/11679_1#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#83 ERR449158 SC_EXP_11822_1#69 252 d572d4b3fa72907af5a1b81c09207d8b;9e759dc1e5f84ea8e46d43132169da94 1313 ac9b86705f5a9164adeb906fced478b6;be1abced1cceaaa5294eaf9eeb826d2d SAMEA2150294 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449158/ERR449158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449158/ERR449158_2.fastq.gz 4150920 WGS 0392_00-sc-2013-07-03T13:34:40Z-1659355 RANDOM 139360033;145931814 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449158/ERR449158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449158/ERR449158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449158/11822_1#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449158/11822_1#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449158/ERR449158_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449158/ERR449158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449158/11822_1#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449158/11822_1#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 236585945;6775 ERS322528 ERX415530 GENOMIC 8966822 415092000 2014-03-04 SC_RUN_11822_1#69 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449158/11822_1#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449158/11822_1#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_1#69 ERR425382 SC_EXP_11511_7#28 224 db7f2ec526edfb38592c51b30d4de46b;f33cd58ef08274a6027c1c5ca3b4fc78 1313 7b865fb94c10822ddfb167762172f831;9ee463a50f855fe6732612055ebc8253 SAMEA2157229 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425382/ERR425382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425382/ERR425382_2.fastq.gz 4514044 WGS 0672_00-sc-2013-07-03T13:28:36Z-1659183 RANDOM 146572031;150619248 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425382/ERR425382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425382/ERR425382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425382/11511_7#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425382/11511_7#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425382/ERR425382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425382/ERR425382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425382/11511_7#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425382/11511_7#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242655417;7356 ERS322362 ERX391657 GENOMIC 8520704 451404400 2014-02-10 SC_RUN_11511_7#28 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425382/11511_7#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425382/11511_7#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#28 ERR433502 SC_EXP_11657_1#71 250 276d4d8ab463f2201f0ce39c23a35702;f78b812dc2a07622ac7fe53cea0fa0f0 1313 dcccaa96770247d17f423c7d9a2a92d9;d0b8d9414b11ffb666a8cc0b95ea3885 SAMEA2160356 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433502/ERR433502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433502/ERR433502_2.fastq.gz 4210408 WGS 1309_00-sc-2013-07-03T13:39:40Z-1659509 RANDOM 137966878;141183476 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433502/ERR433502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433502/ERR433502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433502/11657_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433502/11657_1#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433502/ERR433502_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433502/ERR433502_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433502/11657_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433502/11657_1#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 228202444;6948 ERS322677 ERX399777 GENOMIC 8735059 421040800 2014-02-18 SC_RUN_11657_1#71 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433502/11657_1#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433502/11657_1#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_1#71 ERR425389 SC_EXP_11511_7#36 224 32b18959ab1fd27523cc8c52210d6943;68927cc397ebff47324e2f35abc3b434 1313 350ea0cf1fa9fc30c1dbbe48933d92df;143a02667b7daddec5d5082b57a35cf8 SAMEA2143124 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425389/ERR425389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425389/ERR425389_2.fastq.gz 4357968 WGS 6350_03-sc-2013-07-03T13:29:07Z-1659201 RANDOM 140411255;144159466 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425389/ERR425389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425389/ERR425389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425389/11511_7#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425389/11511_7#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425389/ERR425389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425389/ERR425389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425389/11511_7#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425389/11511_7#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232821523;7164 ERS322377 ERX391664 GENOMIC 8520705 435796800 2014-02-10 SC_RUN_11511_7#36 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425389/11511_7#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425389/11511_7#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#36 ERR425370 SC_EXP_11511_7#16 224 b5136e6d75d0a35c58d48f96f4d6dc42;c04be9fb8292cf214b1f9e6b1fa75e2b 1313 7a25630f4b1b12542225cf91fbc3f538;09615f7a2f5e7fffaa2dd535887162c2 SAMEA2145138 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425370/ERR425370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425370/ERR425370_2.fastq.gz 5209750 WGS 4586_00-sc-2013-07-03T13:27:49Z-1659160 RANDOM 168403755;173513203 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425370/ERR425370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425370/ERR425370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425370/11511_7#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425370/11511_7#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425370/ERR425370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425370/ERR425370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425370/11511_7#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425370/11511_7#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281429877;8590 ERS322339 ERX391645 GENOMIC 8520750 520975000 2014-02-10 SC_RUN_11511_7#16 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425370/11511_7#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425370/11511_7#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#16 ERR338248 SC_EXP_10071_4#84 215 df886d8f6ad7816b9f79c06b240e0255 1313 fc70325642a465c668a1e0fec2fd6b29;ca97fa878e5c7729f21a8b17db5bc9b0 SAMEA2060147 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338248/ERR338248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338248/ERR338248_2.fastq.gz 3231781 WGS PBCN0386-sc-2013-03-27T13:20:31Z-1603708 RANDOM 211161557;219359455 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338248/ERR338248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338248/ERR338248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338248/10071_4#84.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338248/ERR338248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338248/ERR338248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338248/10071_4#84.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 591890223 ERS225842 ERX311153 GENOMIC 7400526 646356200 2013-09-03 SC_RUN_10071_4#84 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338248/10071_4#84.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#84 ERR051661 SC_EXP_6731_6#11 228 6a19aa08fb4dfd79e1161768e19d7d0f 1313 b94eeb3a95df9080a604aa0090cb919c;43b5cd96d5cf8400f1bde75069a5ac80 SAMEA1024870 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051661/ERR051661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051661/ERR051661_2.fastq.gz 3221442 WGS SMRU1115-sc-2011-01-27-1061328 RANDOM 170307058;176880178 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051661/ERR051661_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051661/ERR051661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051661/6731_6#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051661/ERR051661_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051661/ERR051661_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051661/6731_6#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 454509368 ERS020625 ERX028709 GENOMIC 3246390 483216300 2011-11-02 SC_RUN_6731_6#11 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051661/6731_6#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR049986 SC_EXP_6680_5#3 231 5ef72a7d6bd5c78582f6d2107ce0852a 1313 054a83290f3bdc006ef3787432bfde25;43b3773bf14bd10c974efa9a2fa86947 SAMEA1024688 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049986/ERR049986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049986/ERR049986_2.fastq.gz 4575429 WGS SMRU915-sc-2011-01-27-1061128 RANDOM 238122594;246468102 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049986/ERR049986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049986/ERR049986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049986/6680_5#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049986/ERR049986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049986/ERR049986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049986/6680_5#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 611649236 ERS020425 ERX027046 GENOMIC 3178590 686314350 2011-11-07 SC_RUN_6680_5#3 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049986/6680_5#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR331419 SC_EXP_10050_2#29 224 8c3a357ef0c42c9e1ea23b0252a8e387 1313 b53f8931fd43224fc9e4c31e5856a856;24ef2cefa8361b593c63223397d41ade SAMEA2059228 2013-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331419/ERR331419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331419/ERR331419_2.fastq.gz 1919382 WGS PBCN0052-sc-2013-03-27T13:16:36Z-1603475 RANDOM 125122143;135181119 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331419/ERR331419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331419/ERR331419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331419/10050_2#29.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331419/ERR331419_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331419/ERR331419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331419/10050_2#29.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 355088927 ERS225611 ERX304348 GENOMIC 7376940 383876400 2013-08-27 SC_RUN_10050_2#29 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR331/ERR331419/10050_2#29.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA247607 10050_2#29 ERR316597 SC_EXP_9789_2#26 213 c4047068e782aeadd4f9c1a4b38b3c28 1313 77fcb53f4911b656a2b67cbd8bc3d77a;f390530fd10be36542b663e9b5742440 SAMEA2050333 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316597/ERR316597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316597/ERR316597_2.fastq.gz 2864231 WGS D56178-sc-2013-02-18T14:41:48Z-1561717 RANDOM 190803951;208785065 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316597/ERR316597_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316597/ERR316597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316597/9789_2#26.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316597/ERR316597_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316597/ERR316597_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316597/9789_2#26.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 531573867 ERS214936 ERX289745 GENOMIC 7066751 572846200 2013-07-22 SC_RUN_9789_2#26 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316597/9789_2#26.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#26 ERR316904 SC_EXP_9789_5#60 239 15b023e249384dbc611e79da2b78c477 1313 a39689e634b7142163194308f668f433;78e55663bea8937116e3ef1b084ca4e4 SAMEA2050850 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316904/ERR316904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316904/ERR316904_2.fastq.gz 2407248 WGS 904-sc-2013-02-18T14:47:47Z-1562045 RANDOM 149843683;162230441 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316904/ERR316904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316904/ERR316904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316904/9789_5#60.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316904/ERR316904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316904/ERR316904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316904/9789_5#60.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 431926161 ERS215259 ERX290052 GENOMIC 7125962 481449600 2013-07-22 SC_RUN_9789_5#60 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316904/9789_5#60.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#60 ERR316913 SC_EXP_9789_5#69 239 53056975c342304f907a393320b62e8c 1313 dfa250e14363404e292a9b212bc8c7b4;63b9c9ae609df7c25287019253c7e1aa SAMEA2052480 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316913/ERR316913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316913/ERR316913_2.fastq.gz 2105084 WGS 474-sc-2013-02-18T14:47:57Z-1562055 RANDOM 134343498;144786421 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316913/ERR316913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316913/ERR316913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316913/9789_5#69.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316913/ERR316913_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316913/ERR316913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316913/9789_5#69.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 384267885 ERS215269 ERX290061 GENOMIC 7125975 421016800 2013-07-22 SC_RUN_9789_5#69 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316913/9789_5#69.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_5#69 ERR2089528 SC_EXP_21999_8#83 440 d559feedb14add1e8b1a897671a074ec;56e8da14241ed5e6ff60538891f7ad42 1313 adf612db4ffc02e679e7c0c7185f0b49;bb7407c35031496e62a1686417a9d876 SAMEA104154797 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089528/ERR2089528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089528/ERR2089528_2.fastq.gz 3016190 WGS 729f0770-c37a-11e6-b158-3c4a9275d6c8 RANDOM 56351052;58783441 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089528/ERR2089528_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089528/ERR2089528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089528/21999_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089528/21999_8#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089528/ERR2089528_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089528/ERR2089528_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089528/21999_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089528/21999_8#83.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79554616;4868 ERS1813815 ERX2146322 GENOMIC DN476959T:C11 377023750 2017-08-08 SC_RUN_21999_8#83 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089528/21999_8#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089528/21999_8#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#83 ERR2667099 SC_EXP_24775_1#71 378 208c0305edbd4b2f9a1041481ce36592;20c8fabd1200c86db6269d7ff205ad8f 1313 030abe8ab03056518fb8b3759effd3a9;4106bb486f6f39d0ad8e1e58226d80d2 SAMEA4732912 2018-06-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2667099/ERR2667099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2667099/ERR2667099_2.fastq.gz 3400424 WGS edc75e4e-af2d-11e7-a639-3c4a9275d6c8 RANDOM 77260096;95097250 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2667099/ERR2667099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2667099/ERR2667099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667099/24775_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667099/24775_1#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/009/ERR2667099/ERR2667099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/009/ERR2667099/ERR2667099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667099/24775_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2667099/24775_1#71.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 123552197;5676 ERS2553039 ERX2682213 GENOMIC DN502973S:G9 513464024 2018-06-26 SC_RUN_24775_1#71 99 fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2667099/24775_1#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2667099/24775_1#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 HiSeq X Ten paired end sequencing ERA1526580 24775_1#71 ERR1947500 SC_EXP_21903_8#346 431 45f1e0dc35ad23f1cbce45099fba45e9;ed753a09513b46082ce9adb6ecd4e1b9 1313 737df27517151b11deb7af3101987250;df7dd11c1937b57da88b26f1d4eb2201 SAMEA4561528 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947500/ERR1947500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947500/ERR1947500_2.fastq.gz 2113418 WGS 2fd64a00-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 52774593;76998441 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947500/ERR1947500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947500/ERR1947500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947500/21903_8#346.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947500/21903_8#346.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947500/ERR1947500_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947500/ERR1947500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947500/21903_8#346.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947500/21903_8#346.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 94479619;3611 ERS1460707 ERX2013287 GENOMIC 18453235 319126118 2017-04-25 SC_RUN_21903_8#346 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947500/21903_8#346.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947500/21903_8#346.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947250 SC_EXP_21903_8#96 429 2c8613c0d848be6d2ca2df63db573d7f;0202c0cc2bb9b3c4b4ca3185bb3d8ea1 1313 4b669efce44b80913cbd918fac35e6fa;493780beb6c3e003ba60aad82b47129d SAMEA4561276 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947250/ERR1947250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947250/ERR1947250_2.fastq.gz 2564892 WGS 1b2b9bf0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 62790521;92350320 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947250/ERR1947250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947250/ERR1947250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947250/21903_8#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947250/21903_8#96.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947250/ERR1947250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947250/ERR1947250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947250/21903_8#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947250/21903_8#96.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 114510259;4362 ERS1460455 ERX2013037 GENOMIC 18430322 387298692 2017-04-25 SC_RUN_21903_8#96 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947250/21903_8#96.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947250/21903_8#96.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR024535 SC_EXP_4995_8#5 218 73e261e2677789f065bc7ca486dddab3 1313 f9e50ac34adecbb66a3103855cbace52;c5b2e0ac0b912ffb1e7de1749d2ae220 SAMEA971381 2011-01-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024535/ERR024535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024535/ERR024535_2.fastq.gz 3007472 WGS D33733-sc-2010-05-07-40413 RANDOM 262744787;228326741 SRF Streptococcus pneumoniae Pneumococcal in morbus diversity (QEH, Blantyre, Malawi) ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024535/ERR024535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024535/ERR024535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR024/ERR024535/4995_8#5.srf ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR024/ERR024535/ERR024535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR024/ERR024535/ERR024535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR024/ERR024535/4995_8#5.srf Illumina Genome Analyzer II PAIRED Wellcome Sanger Institute;SC PRJEB2110 ERP000164 4602541420 ERS008361 ERX2007652 GENOMIC NT207970B 673673728 2011-01-13 SC_RUN_4995_8#5 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR024/ERR024535/4995_8#5.srf Pneumococcal in morbus diversity (QEH, Blantyre, Malawi)-sc-2010-04-06 Illumina Genome Analyzer II paired end sequencing ERA015791 4995_8#5 ERR1764057 SC_EXP_20957_7#132 430 aa16915670d5f1c987b75f8764530991;0f5aa6a7af63f42e74da885cb46432bf 1313 cfdc6ce88f7a2a4f309059ac7a5ceb81;67a6e24cfdfd9fe317b3f18c50a4fe8f SAMEA4392460 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764057/ERR1764057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764057/ERR1764057_2.fastq.gz 2775048 WGS fa39fc40-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 57419679;64652927 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764057/ERR1764057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764057/ERR1764057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764057/20957_7#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764057/20957_7#132.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/007/ERR1764057/ERR1764057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/007/ERR1764057/ERR1764057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764057/20957_7#132.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764057/20957_7#132.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86993535;4590 ERS1303909 ERX1829626 GENOMIC DN462612U:E5 346881000 2016-12-20 SC_RUN_20957_7#132 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764057/20957_7#132.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764057/20957_7#132.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#132 ERR1788139 SC_EXP_21053_8#127 404 04c28ad069532260413afd954e38176f;71889c9f91b7a69543470d356233838c 1313 784efe5e18a718a51d5b9edbbf0b7f99;efa3f640ab1ee5e33cfde50530170b74 SAMEA4388419 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/009/ERR1788139/ERR1788139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/009/ERR1788139/ERR1788139_2.fastq.gz 2849760 WGS 53f6cd80-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 54759477;57890990 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/009/ERR1788139/ERR1788139_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/009/ERR1788139/ERR1788139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788139/21053_8#127.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788139/21053_8#127.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/009/ERR1788139/ERR1788139_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/009/ERR1788139/ERR1788139_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788139/21053_8#127.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788139/21053_8#127.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80965244;4743 ERS1299868 ERX1851862 GENOMIC DN465033T:H4 356220000 2017-01-11 SC_RUN_21053_8#127 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788139/21053_8#127.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788139/21053_8#127.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#127 ERR1453757 SC_EXP_19341_3#109 459 090606833d27931ede5b6873334d459d;f0ba44be326bfbf6f1efe73673c5b7da 1313 77c3c1729c4f214e3d71b9c751e0be6b;4bb5b2b2e48b94baa7ff47a2d66ae8bb SAMEA3714074 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453757/ERR1453757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453757/ERR1453757_2.fastq.gz 2688284 WGS 42111bb0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 56666825;64142451 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453757/ERR1453757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/007/ERR1453757/ERR1453757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453757/19341_3#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453757/19341_3#109.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453757/ERR1453757_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/007/ERR1453757/ERR1453757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453757/19341_3#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453757/19341_3#109.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87301835;4476 ERS1021223 ERX1524235 GENOMIC 16008513 336035500 2016-06-14 SC_RUN_19341_3#109 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453757/19341_3#109.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453757/19341_3#109.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#109 ERR1422652 SC_EXP_19084_8#139 451 9dcd4e9eb06ccee9fb5b8c2669fa2c28;ba1fea888b226b7313114a6b8d47a640 1313 50b5d30f6bc000ef4a7cccfc9e83c623;c483a487245057e65cc872d87a69f3e4 SAMEA3714476 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422652/ERR1422652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422652/ERR1422652_2.fastq.gz 2441354 WGS 553e7890-41bd-11e5-998e-3c4a9275d6c6 RANDOM 56387218;56890922 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422652/ERR1422652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/002/ERR1422652/ERR1422652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422652/19084_8#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422652/19084_8#139.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/002/ERR1422652/ERR1422652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/002/ERR1422652/ERR1422652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422652/19084_8#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422652/19084_8#139.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81033315;4121 ERS1021625 ERX1493234 GENOMIC 15758583 305169250 2016-05-24 SC_RUN_19084_8#139 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422652/19084_8#139.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422652/19084_8#139.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#139 ERR1202182 SC_EXP_17870_7#112 463 8c2abd5a5d9e17815a7f9900eb643cb6;1d8379f785150ff265b6bd581333baa7 1313 65e2a6bce2737ed8ae545cc60f836ba4;f36a9d3176a6a076fc5f891347f4cc57 SAMEA3389661 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202182/ERR1202182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202182/ERR1202182_2.fastq.gz 2268748 WGS GPS_MW_BND1CX-sc-2295903 RANDOM 44108547;46444026 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202182/ERR1202182_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202182/ERR1202182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202182/17870_7#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202182/17870_7#112.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202182/ERR1202182_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202182/ERR1202182_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202182/17870_7#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202182/17870_7#112.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67694429;3796 ERS725764 ERX1274424 GENOMIC 14978373 283593500 2016-01-12 SC_RUN_17870_7#112 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202182/17870_7#112.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202182/17870_7#112.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#112 ERR1288913 SC_EXP_18456_1#104 459 eca7e3c9b33a143aeec749a49a59f74d;25a0526cc5799da04f26e77bb5230013 1313 9a03b36624df000e58933975d53c3497;3f8224f67146c06d9a5af6deaa78018e SAMEA3389213 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288913/ERR1288913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288913/ERR1288913_2.fastq.gz 2771460 WGS GPS_MW_A9274-sc-2295686 RANDOM 59515383;59127530 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288913/ERR1288913_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288913/ERR1288913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288913/18456_1#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288913/18456_1#104.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/003/ERR1288913/ERR1288913_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/003/ERR1288913/ERR1288913_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288913/18456_1#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288913/18456_1#104.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84308451;4631 ERS725316 ERX1360519 GENOMIC 14970390 346432500 2016-02-23 SC_RUN_18456_1#104 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288913/18456_1#104.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288913/18456_1#104.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#104 ERR1202248 SC_EXP_17870_7#178 463 76cb57ce95629c47f4c43378cf0985f4;8a3f983282dec066fa9716d66dde5d83 1313 a7e0c6234d51b15c2652bdf4b725a94d;d86c9ff4235bfcbb0616836db1e3f0e1 SAMEA3389781 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202248/ERR1202248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202248/ERR1202248_2.fastq.gz 2123768 WGS GPS_MW_D27790-sc-2296025 RANDOM 41728569;44481276 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202248/ERR1202248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202248/ERR1202248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202248/17870_7#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202248/17870_7#178.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202248/ERR1202248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202248/ERR1202248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202248/17870_7#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202248/17870_7#178.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64775892;3595 ERS725884 ERX1274490 GENOMIC 14978405 265471000 2016-01-12 SC_RUN_17870_7#178 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202248/17870_7#178.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202248/17870_7#178.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#178 ERR1066117 SC_EXP_17175_6#15 449 548a94e8d0df9238a699d960475c25da;801ebf788af81425a5f3bdd00b83c718 1313 935331291146dbfcc93e73e8732d1293;a90db3d4f7e70bd0352f154098745b09 SAMEA3353744 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066117/ERR1066117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066117/ERR1066117_2.fastq.gz 6057896 WGS GPS_ZA_carriage_SP1718-sc-2278348 RANDOM 111889546;115563949 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066117/ERR1066117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066117/ERR1066117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066117/17175_6#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066117/17175_6#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066117/ERR1066117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066117/ERR1066117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066117/17175_6#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066117/17175_6#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177377008;9933 ERS708099 ERX1146267 GENOMIC 14427577 757237000 2015-10-13 SC_RUN_17175_6#15 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066117/17175_6#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066117/17175_6#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#15 ERR1065213 SC_EXP_17059_7#8 465 b9340a527e375fb033d1d045a87ed6cd;ef0ad0ff7fdfdc55cb4683780cb2263e 1313 4875155631322365924e801a7f66e47f;7301269914ef912a6fcf4c087b7a750a SAMEA3353174 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065213/ERR1065213_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065213/ERR1065213_2.fastq.gz 5335444 WGS GPS_ZA_carriage_SP1242-sc-2277772 RANDOM 95580204;97324482 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065213/ERR1065213_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065213/ERR1065213_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065213/17059_7#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065213/17059_7#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065213/ERR1065213_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065213/ERR1065213_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065213/17059_7#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065213/17059_7#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 159262132;8881 ERS707529 ERX1145363 GENOMIC 14406366 666930500 2015-10-13 SC_RUN_17059_7#8 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065213/17059_7#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065213/17059_7#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#8 ERR908920 SC_EXP_15841_1#71 206 24be4a14cd5863c7bb5ad9404f18e6ed;17d549142b826e2a2764da1089b2fece 1313 7fa8fcf24acb7e302b60c854c4adb86e;12b426a623b6324eaf471bf5da32de8e SAMEA3206854 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908920/ERR908920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908920/ERR908920_2.fastq.gz 5242346 WGS GPS_ZA_carriage_SP271-sc-2191788 RANDOM 169889264;175384538 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908920/ERR908920_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908920/ERR908920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908920/15841_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908920/15841_1#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908920/ERR908920_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908920/ERR908920_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908920/15841_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908920/15841_1#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279532691;8165 ERS638864 ERX988175 GENOMIC 13227517 524234600 2015-06-09 SC_RUN_15841_1#71 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908920/15841_1#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908920/15841_1#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#71 ERR870081 SC_EXP_15531_4#79 207 f1cf6696888da7d0d21c0f3aad349532;41bb09893a859c39a034f2086763f348 1313 dec92bb63699247b9385a32aeecf5123;6aca6e2ae29f0c33cb2fb8e4586b81fe SAMEA3172839 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870081/ERR870081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870081/ERR870081_2.fastq.gz 5101882 WGS GPS_GM_0959-sc-2190396 RANDOM 203357651;193320495 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870081/ERR870081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870081/ERR870081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870081/15531_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870081/15531_4#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870081/ERR870081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870081/ERR870081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870081/15531_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870081/15531_4#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 329744976;7984 ERS627082 ERX949682 GENOMIC 12882862 510188200 2015-05-06 SC_RUN_15531_4#79 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870081/15531_4#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870081/15531_4#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#79 ERR774297 SC_EXP_14913_7#13 228 09303fbb9e154f569a0eef7d03166b7c;c77c3041e23ebc7990d73576d6c6be08 1313 c23171e83f61b6f9f8e3cec578202e5e;6b8b4393307536ae9e561aa7a45e2e29 SAMEA2814223 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774297/ERR774297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774297/ERR774297_2.fastq.gz 5055370 WGS GPS_ZA_2435-sc-2022710 RANDOM 168978603;177133999 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774297/ERR774297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774297/ERR774297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774297/14913_7#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774297/14913_7#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774297/ERR774297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774297/ERR774297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774297/14913_7#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774297/14913_7#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283631320;8091 ERS566591 ERX717176 GENOMIC 12357970 505537000 2015-03-03 SC_RUN_14913_7#13 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774297/14913_7#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774297/14913_7#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#13 ERR774251 SC_EXP_14913_6#62 223 527c38295774319dd7ce2847488d6914;b0974cbab8b4e6febbb3e0e0fa86d023 1313 fe57f33ebf7bf278accfe68ce9b65664;4043b86244b2506fed4f9a27ed01b98d SAMEA2814557 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774251/ERR774251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774251/ERR774251_2.fastq.gz 4519788 WGS GPS_ZA_681-sc-2138353 RANDOM 140971824;149730197 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774251/ERR774251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774251/ERR774251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774251/14913_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774251/14913_6#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774251/ERR774251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774251/ERR774251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774251/14913_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774251/14913_6#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 236783725;7276 ERS566925 ERX717130 GENOMIC 12334863 451978800 2015-03-03 SC_RUN_14913_6#62 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774251/14913_6#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774251/14913_6#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#62 ERR730467 SC_EXP_14520_7#44 213 6244354ad005d720de6cc4d0077286fb;c3549bf424cc9334e05620c9fb4d5bb6 1313 8c7a40f0561f316a67e67a92d90aab96;4373449a892278b3e08ed94ef317cae0 SAMEA2696612 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730467/ERR730467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730467/ERR730467_2.fastq.gz 4170146 WGS GPS_GM_0847-sc-2022069 RANDOM 160977517;164648429 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730467/ERR730467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730467/ERR730467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730467/14520_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730467/14520_7#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730467/ERR730467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730467/ERR730467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730467/14520_7#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730467/14520_7#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263432688;6737 ERS525191 ERX674413 GENOMIC 11983425 417014600 2015-01-14 SC_RUN_14520_7#44 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730467/14520_7#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730467/14520_7#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_7#44 ERR714398 SC_EXP_14410_7#41 220 211912450131a3acfdf7fe5873100aec;6f6a88c5b3f4f162311385d898d9084c 1313 3e37979ef98898d845dfeda6799a58dd;48b1aba810d67b182b6966141fb38955 SAMEA2627423 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714398/ERR714398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714398/ERR714398_2.fastq.gz 5741958 WGS GPS_GM_0474-sc-2003361 RANDOM 198989812;199085574 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714398/ERR714398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714398/ERR714398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714398/14410_7#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714398/14410_7#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714398/ERR714398_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714398/ERR714398_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714398/14410_7#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714398/14410_7#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326723126;9486 ERS497322 ERX658320 GENOMIC 11883154 574195800 2015-01-08 SC_RUN_14410_7#41 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714398/14410_7#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714398/14410_7#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#41 ERR633018 SC_EXP_13415_7#89 225 0833c5a50f62fd6e963eef69fa3081d4;c3edd5cc058a0280b6bc48d51bd785a3 1313 7fd808a7a702ab01df4bc600002ba87c;637e663ac218f17ce425b62a232aad1a SAMEA2554200 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633018/ERR633018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633018/ERR633018_2.fastq.gz 4093242 WGS GPS_ZA_1089-sc-1951237 RANDOM 138926756;142521138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633018/ERR633018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633018/ERR633018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633018/13415_7#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633018/13415_7#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633018/ERR633018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633018/ERR633018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633018/13415_7#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633018/13415_7#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232750187;6710 ERS464701 ERX589572 GENOMIC 10646298 409324200 2014-09-23 SC_RUN_13415_7#89 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633018/13415_7#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633018/13415_7#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#89 ERR600133 SC_EXP_13414_1#80 292 19b890aa95733d6f5f5e0ef30e80c517;37944c99e2fe28cb843ae6b007595156 1313 8dbbec9363fb3d14fa0645664d2e9f8b;c109e56209eac8ad4e8ef6de6f29356a SAMEA2521536 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600133/ERR600133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600133/ERR600133_2.fastq.gz 5683246 WGS 2013212457-sc-1946827 RANDOM 200037723;204456604 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600133/ERR600133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600133/ERR600133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600133/13414_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600133/13414_1#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600133/ERR600133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600133/ERR600133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600133/13414_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600133/13414_1#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333506296;8931 ERS455076 ERX556962 GENOMIC 10524202 568324600 2014-09-16 SC_RUN_13414_1#80 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600133/13414_1#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600133/13414_1#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#80 ERR600268 SC_EXP_13414_3#66 223 6fa29be37034c9f65dd988bac3d76822;94fdd1474c6d195739416d828dea62fe 1313 59aa88b2069c436a04c9a612e82dca8b;70ecccfcc4d59c7a72f2bc415159d0ce SAMEA2521712 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600268/ERR600268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600268/ERR600268_2.fastq.gz 6253800 WGS 2012214024-sc-1947005 RANDOM 213735180;220520173 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600268/ERR600268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600268/ERR600268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600268/13414_3#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600268/13414_3#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600268/ERR600268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600268/ERR600268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600268/13414_3#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600268/13414_3#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 357216790;9734 ERS455252 ERX557097 GENOMIC 10600611 625380000 2014-09-16 SC_RUN_13414_3#66 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600268/13414_3#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600268/13414_3#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#66 ERR570409 SC_EXP_12837_5#8 238 ca4db76b79177b6013a9f1f75e9b9cdf;03283c0a706fc218c26b492abe1afabb 1313 acb9e287c92aea3f9dc0b5027d7adab6;949c296af415f5fcaf077ffcab1bc163 SAMEA2434772 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570409/ERR570409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570409/ERR570409_2.fastq.gz 6938634 WGS SA_GPS_SP667-sc-1895838 RANDOM 230643708;236499306 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570409/ERR570409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570409/ERR570409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570409/12837_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570409/12837_5#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570409/ERR570409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570409/ERR570409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570409/12837_5#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570409/12837_5#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 388368127;11355 ERS428949 ERX529398 GENOMIC 9993298 693863400 2014-07-28 SC_RUN_12837_5#8 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570409/12837_5#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570409/12837_5#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#8 ERR586396 SC_EXP_13154_3#22 234 1d53419cdfd8da83b1ac5dd8954c9606;b586e4d97160a6109be2e72bcb2e9e5d 1313 5da6c5967a5ede04be1d85dc8ecbbd38;6e38ab58f6048f1edf01cb77a1fcd2fe SAMEA2467564 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586396/ERR586396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586396/ERR586396_2.fastq.gz 6262496 WGS 2009218333-sc-1926350 RANDOM 194049423;199941913 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586396/ERR586396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586396/ERR586396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586396/13154_3#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586396/13154_3#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586396/ERR586396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586396/ERR586396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586396/13154_3#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586396/13154_3#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322392102;10215 ERS437321 ERX544404 GENOMIC 10228230 626249600 2014-08-27 SC_RUN_13154_3#22 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586396/13154_3#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586396/13154_3#22.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_3#22 ERR568703 SC_EXP_12837_4#17 226 3a174c75425837959c391f86d59070f5;aace6f621202925295d2fab61ea3dd4b 1313 1edf155b1da9baeb5b2f97a3748af53d;b22ffefbb37837ec4e556b1c7a1271c8 SAMEA2434693 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568703/ERR568703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568703/ERR568703_2.fastq.gz 5291158 WGS SA_GPS_SP588-sc-1895758 RANDOM 182392198;185903622 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568703/ERR568703_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568703/ERR568703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568703/12837_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568703/12837_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568703/ERR568703_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568703/ERR568703_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568703/12837_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568703/12837_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305175446;8678 ERS428870 ERX527692 GENOMIC 9986195 529115800 2014-07-23 SC_RUN_12837_4#17 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568703/12837_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568703/12837_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#17 ERR563739 SC_EXP_12754_1#80 223 b1410c95e42b2afff6d4f6eb62e9a055;23a669e6b4fab2a487bc222023e70b73 1313 5b7b3505d50da65b18adf3c5def85974;ecedf5e63650c23bedd8b98d0e570da1 SAMEA2383005 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563739/ERR563739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563739/ERR563739_2.fastq.gz 4701684 WGS 2082171_II-sc-1870254 RANDOM 154559723;159616222 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563739/ERR563739_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563739/ERR563739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563739/12754_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563739/12754_1#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563739/ERR563739_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563739/ERR563739_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563739/12754_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563739/12754_1#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 258647872;7759 ERS409330 ERX522764 GENOMIC 9918563 470168400 2014-07-16 SC_RUN_12754_1#80 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563739/12754_1#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563739/12754_1#80.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#80 ERR501616 SC_EXP_12290_3#76 200 4b10446b9edd1e7a4dab01a413d92156;2b0c3e3be0b366239b969414e53014f8 1313 2f8551886c3eb902158f7faad9fdcc2c;a1bd12a82010ce551aadbc3160cf9520 SAMEA2341351 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501616/ERR501616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501616/ERR501616_2.fastq.gz 3401828 WGS D2310-sc-1811428 RANDOM 102505300;108495144 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501616/ERR501616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501616/ERR501616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501616/12290_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501616/12290_3#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501616/ERR501616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501616/ERR501616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501616/12290_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501616/12290_3#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 170754339;5605 ERS399022 ERX466973 GENOMIC 9467225 340182800 2014-05-12 SC_RUN_12290_3#76 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501616/12290_3#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501616/12290_3#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#76 ERR449237 SC_EXP_11826_1#51 238 f38fc377a66cba10c1fa5fa5975a68fd;ff0c85f411878f3e2fd2ee7c54794866 1313 c5a3b745ce408e519ff1c828a358444c;163c280a3d466a0a55070ffad06da376 SAMEA2150163 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449237/ERR449237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449237/ERR449237_2.fastq.gz 3981944 WGS 3031_03-sc-2013-07-03T13:33:32Z-1659324 RANDOM 127121332;129931528 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449237/ERR449237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449237/ERR449237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449237/11826_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449237/11826_1#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449237/ERR449237_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449237/ERR449237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449237/11826_1#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449237/11826_1#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 207928832;6659 ERS322497 ERX415609 GENOMIC 8949124 398194400 2014-03-04 SC_RUN_11826_1#51 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449237/11826_1#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449237/11826_1#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#51 ERR439002 SC_EXP_11791_1#59 250 da8e160c60d33f1e21d5398d4c2fc315;e76a2477acd1d20b468349766944b7b5 1313 d951a88e676d2020397e788aea2cae6e;eb5d3bc80a4d3de4b3dc9e197d3104ba SAMEA2203379 2014-02-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR439/ERR439002/ERR439002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR439/ERR439002/ERR439002_2.fastq.gz 8368990 WGS PNI0246-sc-2013-10-09T11:41:50Z-1708894 RANDOM 281568202;291157993 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR439/ERR439002/ERR439002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR439/ERR439002/ERR439002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR439/ERR439002/11791_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR439/ERR439002/11791_1#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR439/ERR439002/ERR439002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR439/ERR439002/ERR439002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR439/ERR439002/11791_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR439/ERR439002/11791_1#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 476383506;13381 ERS355883 ERX405665 GENOMIC 8859097 836899000 2014-02-24 SC_RUN_11791_1#59 fasp.sra.ebi.ac.uk:/vol1/run/ERR439/ERR439002/11791_1#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR439/ERR439002/11791_1#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA287820 11791_1#59 ERR433967 SC_EXP_11679_1#3 216 91adb5f446d250e2da9916eabdd07ee8;1fd7acc0b0dc1d73bb1e924a0d6cd140 1313 dc45e603491202846315433a355922b7;93251356b99e8a0855bec67c37684568 SAMEA2203770 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433967/ERR433967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433967/ERR433967_2.fastq.gz 3423312 WGS 2009209968-sc-2013-10-09T11:49:05Z-1712359 RANDOM 111641088;119337708 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433967/ERR433967_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433967/ERR433967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433967/11679_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433967/11679_1#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433967/ERR433967_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433967/ERR433967_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433967/11679_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433967/11679_1#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188659633;5653 ERS356274 ERX400242 GENOMIC 8801431 342331200 2014-02-18 SC_RUN_11679_1#3 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433967/11679_1#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433967/11679_1#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#3 ERR433679 SC_EXP_11657_4#81 219 9ca2569a9aec0375dcdca0062af2c295;6e40e20ae8ffde7a10e3153156729424 1313 54684cf86cc93e01d78ea921c9e2e90f;8d96fe05862da070668b66e27aa8129a SAMEA2204121 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433679/ERR433679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433679/ERR433679_2.fastq.gz 4274776 WGS PATH2277-sc-2013-10-09T11:55:43Z-1712713 RANDOM 140546214;144384155 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433679/ERR433679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433679/ERR433679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433679/11657_4#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433679/11657_4#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433679/ERR433679_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433679/ERR433679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433679/11657_4#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433679/11657_4#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 233706020;7036 ERS356632 ERX399954 GENOMIC 8529774 427477600 2014-02-18 SC_RUN_11657_4#81 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433679/11657_4#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433679/11657_4#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_4#81 ERR129120 SC_EXP_7622_3#96 221 b2577f14977473380537d1a719a3ffe7 1313 68821879f0088b43d86aafda0f642505;ffd8c5cfdc486d0d3a5aa093d8240801 SAMEA1463006 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129120/ERR129120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129120/ERR129120_2.fastq.gz 3521407 WGS GL3066-sc-2011-11-08T10:07:32Z-1298379 RANDOM 379561539;383045880 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129120/ERR129120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129120/ERR129120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129120/7622_3#96.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129120/ERR129120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129120/ERR129120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129120/7622_3#96.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 732396487 ERS070011 ERX105261 GENOMIC 4336529 704281400 2012-05-28 SC_RUN_7622_3#96 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129120/7622_3#96.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124295 SC_EXP_7553_5#79 207 52148113c88ebf1b9e3799cfe3c43c0c 1313 312782d186d5f488744d59039436bb59;d2f3c42d75934d2e948d95aa70ed89cc SAMEA1462989 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124295/ERR124295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124295/ERR124295_2.fastq.gz 4736720 WGS PT8052-sc-2011-11-08T10:09:42Z-1298554 RANDOM 496929770;518485960 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124295/ERR124295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124295/ERR124295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124295/7553_5#79.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124295/ERR124295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124295/ERR124295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124295/7553_5#79.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 989932142 ERS070186 ERX100477 GENOMIC 4383198 947344000 2012-05-09 SC_RUN_7553_5#79 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124295/7553_5#79.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR064201 SC_EXP_6949_3#15 256 7b0cf9c3129a46d318130e5c60d02a7d 1313 dba33e4a69366cbce8e4295bd1b88e07;a845c74d5a3bdaa1f873fdb7cbd0aa6b SAMEA1028833 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064201/ERR064201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064201/ERR064201_2.fastq.gz 3838177 WGS SMRU2463-sc-2011-01-27-1062676 RANDOM 194224633;202907653 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064201/ERR064201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064201/ERR064201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064201/6949_3#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064201/ERR064201_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064201/ERR064201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064201/6949_3#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 498113407 ERS021973 ERX042174 GENOMIC 3660742 575726550 2012-03-19 SC_RUN_6949_3#15 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064201/6949_3#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054558 SC_EXP_6755_3#2 217 44f50cc6007577efad2c967835cbaeb5 1313 ad0aaa373312aa456fbf05b9e5daefe0;305a38eb236eaa7e9ded16b47cfa679b SAMEA1024534 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054558/ERR054558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054558/ERR054558_2.fastq.gz 3857843 WGS SMRU866-sc-2011-01-27-1061079 RANDOM 190055232;194450097 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054558/ERR054558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054558/ERR054558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054558/6755_3#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054558/ERR054558_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054558/ERR054558_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054558/6755_3#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 499631247 ERS020376 ERX031604 GENOMIC 3152387 578676450 2011-11-15 SC_RUN_6755_3#2 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054558/6755_3#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR068294 SC_EXP_7004_3#51 245 38c0dc95d70dbf2ea36638f2b51d12e8 1313 c35f927b59ace51e4e9c0180d56cf831;af92bd61c60c33b6ac812cddf21afe9f SAMEA1033744 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068294/ERR068294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068294/ERR068294_2.fastq.gz 832777 WGS C12675a-sc-2011-08-23T15:08:34Z-1261871 RANDOM 52349872;48324248 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068294/ERR068294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068294/ERR068294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068294/7004_3#51.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068294/ERR068294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068294/ERR068294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068294/7004_3#51.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 128161526 ERS050452 ERX046157 GENOMIC 3723406 124916550 2012-01-16 SC_RUN_7004_3#51 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068294/7004_3#51.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA080989 7004_3#51 ERR051532 SC_EXP_6730_8#2 229 19165f7018787f2bc6e19938e19d0ff0 1313 29d5c3b3b2578481d4667b0a2855fa75;d1591595359ac0d34090f8c3b311a023 SAMEA1025027 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051532/ERR051532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051532/ERR051532_2.fastq.gz 3387163 WGS SMRU722-sc-2011-01-27-1060911 RANDOM 187990676;193950837 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051532/ERR051532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051532/ERR051532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051532/6730_8#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051532/ERR051532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051532/ERR051532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051532/6730_8#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 474007644 ERS020232 ERX028580 GENOMIC 3100224 508074450 2011-11-02 SC_RUN_6730_8#2 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051532/6730_8#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR086003 SC_EXP_7068_2#51 241 5b517d51316ff230fb28eff988c7d65e 1313 091acd22bc224c116302fd2d483d9851;c6d4ea9622db8efcaacb076d1b779212 SAMEA1033744 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086003/ERR086003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086003/ERR086003_2.fastq.gz 1327705 WGS C12675a-sc-2011-08-23T15:08:34Z-1261871 RANDOM 88749577;86850270 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086003/ERR086003_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086003/ERR086003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR086/ERR086003/7068_2#51.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR086/ERR086003/ERR086003_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR086/ERR086003/ERR086003_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR086/ERR086003/7068_2#51.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 226708617 ERS050452 ERX063769 GENOMIC 3723406 199155750 2012-02-07 SC_RUN_7068_2#51 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR086/ERR086003/7068_2#51.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA087412 7004_3#51 ERR057890 SC_EXP_6823_3#13 242 64604fb9bdc0ceab97acb83dd161224e 1313 88dae558f6827d46ec7aeeed915b3817;61a1ab58876002f8ec3ce6b9368de00e SAMEA1025742 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057890/ERR057890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057890/ERR057890_2.fastq.gz 5646310 WGS SMRU1909-sc-2011-01-27-1062122 RANDOM 360428855;367915403 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057890/ERR057890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057890/ERR057890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057890/6823_3#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057890/ERR057890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057890/ERR057890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057890/6823_3#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 944645362 ERS021419 ERX035736 GENOMIC 3469138 846946500 2012-03-22 SC_RUN_6823_3#13 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057890/6823_3#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057795 SC_EXP_6807_2#13 221 eea6c6028dea703e2bd53218cd8017aa 1313 1371c01befa81aef10da3adfa7d14e9c;0692ee9ee556371e9929e46a0c4def8b SAMEA1025417 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057795/ERR057795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057795/ERR057795_2.fastq.gz 5153041 WGS SMRU1597-sc-2011-01-27-1061810 RANDOM 324754250;320693802 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057795/ERR057795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057795/ERR057795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057795/6807_2#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057795/ERR057795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057795/ERR057795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057795/6807_2#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 801357126 ERS021107 ERX035641 GENOMIC 3414293 772956150 2011-12-05 SC_RUN_6807_2#13 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057795/6807_2#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR051534 SC_EXP_6730_8#4 229 d8377f0f9e62573d313e3c94923c0f71 1313 85c454eb4ce138ecc4109140a3eae8ea;e63d50219de6935658b7ac4a1e6338be SAMEA1025056 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051534/ERR051534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051534/ERR051534_2.fastq.gz 1614620 WGS SMRU724-sc-2011-01-27-1060913 RANDOM 88665074;91448465 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051534/ERR051534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051534/ERR051534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051534/6730_8#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051534/ERR051534_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051534/ERR051534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051534/6730_8#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 226238092 ERS020234 ERX028582 GENOMIC 3100226 242193000 2011-11-02 SC_RUN_6730_8#4 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051534/6730_8#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR050054 SC_EXP_6680_7#23 229 b3b6f888332304efbdb71cc17a48e5a5 1313 e00653f89ebd978280a30e98d0248804;88033b7112168e8dd99259a69e7e7689 SAMEA1024756 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050054/ERR050054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050054/ERR050054_2.fastq.gz 15142573 WGS SMRU983-sc-2011-01-27-1061196 RANDOM 837579610;877179251 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050054/ERR050054_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050054/ERR050054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050054/6680_7#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050054/ERR050054_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050054/ERR050054_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050054/6680_7#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 2095204394 ERS020493 ERX027114 GENOMIC 3178902 2271385950 2011-11-07 SC_RUN_6680_7#23 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050054/6680_7#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR045423 SC_EXP_6486_8#8 229 787aec59ab8be3e6dc0f1c03d9f8adf2 1313 09b1d52891741ee4d8377e13580e40a6;553a57490128ba320a253fc835d5b27d SAMEA1026394 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045423/ERR045423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045423/ERR045423_2.fastq.gz 7985688 WGS UoS5135-sc-2011-03-11-1098967 RANDOM 422018453;426379238 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045423/ERR045423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045423/ERR045423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045423/6486_8#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045423/ERR045423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045423/ERR045423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045423/6486_8#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1048353955 ERS025157 ERX022485 GENOMIC 2745027 1197853200 2011-09-14 SC_RUN_6486_8#8 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045423/6486_8#8.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_8#8 ERR316620 SC_EXP_9789_2#49 213 a93de770658181b00828091bef20c053 1313 65417f26598189c6cbc621d54d2fea2f;d500d3c24552410f832b07144fd4354b SAMEA2051623 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316620/ERR316620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316620/ERR316620_2.fastq.gz 2947616 WGS C20960-sc-2013-02-18T14:42:14Z-1561741 RANDOM 188348092;208020460 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316620/ERR316620_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316620/ERR316620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316620/9789_2#49.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316620/ERR316620_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316620/ERR316620_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316620/9789_2#49.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 547847178 ERS214959 ERX289768 GENOMIC 7066742 589523200 2013-07-22 SC_RUN_9789_2#49 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316620/9789_2#49.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#49 ERR316604 SC_EXP_9789_2#33 213 f13064da6311b27053b59c46ecaf7547 1313 2e552c979ec7c64f3e5870f176c9a84d;1865362b7bc6be8a73dceb4260572061 SAMEA2051919 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316604/ERR316604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316604/ERR316604_2.fastq.gz 4523157 WGS C17490-sc-2013-02-18T14:41:55Z-1561724 RANDOM 288732656;317608702 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316604/ERR316604_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316604/ERR316604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316604/9789_2#33.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316604/ERR316604_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316604/ERR316604_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316604/9789_2#33.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 831499456 ERS214943 ERX289752 GENOMIC 7066740 904631400 2013-07-22 SC_RUN_9789_2#33 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316604/9789_2#33.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#33 ERR2305045 SC_EXP_22695_3#4 424 6b37777609261b1db3aeb0f7cc69017d;fbcfe94aeb38746fea3b01299a0356fa 1313 4f5fe2e8b5c3f860b4b45836c0844725;b08e96f70dfd2c7365fa5c5616a5e025 SAMEA104034593 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305045/ERR2305045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305045/ERR2305045_2.fastq.gz 2368912 WGS e4e40a30-13c3-11e7-942b-3c4a9275d6c8 RANDOM 66459657;88714844 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305045/ERR2305045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305045/ERR2305045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305045/22695_3#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305045/22695_3#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305045/ERR2305045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305045/ERR2305045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305045/22695_3#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305045/22695_3#4.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 115060748;3952 ERS1698486 ERX2356355 GENOMIC DN477140L:D1 357705712 2018-02-16 SC_RUN_22695_3#4 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305045/22695_3#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305045/22695_3#4.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808558 ERR2090531 SC_EXP_22667_8#69 430 41998c417eac4660eb53a3a0e4ae13c6;b59fcd2254fc0b58d8b58eca7a6e1a02 1313 9127dfe6acdd7905334b29cbfa7b6aee;7eec1074b9b2bcca27b41bc70c743975 SAMEA104038617 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090531/ERR2090531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090531/ERR2090531_2.fastq.gz 3355380 WGS d46f03e0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62404940;68279250 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090531/ERR2090531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090531/ERR2090531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090531/22667_8#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090531/22667_8#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090531/ERR2090531_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090531/ERR2090531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090531/22667_8#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090531/22667_8#69.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91789242;5461 ERS1702510 ERX2147325 GENOMIC DN486339C:E9 419422500 2017-08-08 SC_RUN_22667_8#69 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090531/22667_8#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090531/22667_8#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_8#69 ERR1422570 SC_EXP_19084_8#57 440 e0619e5256397ec5545dbe894747193e;bce9511ab3f9daefae1d1250a2826a6c 1313 88cd1fb6e2bfce8acff9b0351baeba9e;31d2b0c8589b909802c6aa05010177bd SAMEA3714394 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422570/ERR1422570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422570/ERR1422570_2.fastq.gz 3049768 WGS 4eb1d5d0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 64922621;65245241 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422570/ERR1422570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422570/ERR1422570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422570/19084_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422570/19084_8#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422570/ERR1422570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422570/ERR1422570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422570/19084_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422570/19084_8#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88479230;5115 ERS1021543 ERX1493152 GENOMIC 15758384 381221000 2016-05-24 SC_RUN_19084_8#57 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422570/19084_8#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422570/19084_8#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#57 ERR1422513 SC_EXP_19084_7#184 423 a59bcf9e551ca92896c3f4db2473288e;5047b4cf8ca95029f03932912dabde40 1313 4dd74be1faa10cde33d2499c8a6f19ca;a669f9addaa326b446f58c91e1ced6b4 SAMEA3714337 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422513/ERR1422513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422513/ERR1422513_2.fastq.gz 2469644 WGS 4cb8c4f0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 52158266;51367952 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422513/ERR1422513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422513/ERR1422513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422513/19084_7#184.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422513/19084_7#184.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422513/ERR1422513_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422513/ERR1422513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422513/19084_7#184.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422513/19084_7#184.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74285503;4211 ERS1021486 ERX1493095 GENOMIC 15738116 308705500 2016-05-24 SC_RUN_19084_7#184 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422513/19084_7#184.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422513/19084_7#184.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#184 ERR1947773 SC_EXP_21946_6#253 450 7afd965cb00189c27d0b9519d36e16f8;05a6315803f4e0b40ad26e29f634449c 1313 70408ab1594b0883592ea97d1c8aa6dc;721af6508034d2b14029af1b9705e264 SAMEA4561068 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947773/ERR1947773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947773/ERR1947773_2.fastq.gz 2787666 WGS 0434db00-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 73000750;100471991 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947773/ERR1947773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947773/ERR1947773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947773/21946_6#253.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947773/21946_6#253.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947773/ERR1947773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947773/ERR1947773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947773/21946_6#253.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947773/21946_6#253.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 127218052;4637 ERS1460247 ERX2013560 GENOMIC 18471336 420937566 2017-04-25 SC_RUN_21946_6#253 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947773/21946_6#253.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947773/21946_6#253.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR925037 SC_EXP_15995_1#11 231 2a16b0ff24951eb31633f1830e8eaa81;97c7a655f19f0807525ff56f6e9ea8d3 1313 4109fbb8d0885e24ff1d6b1fc1ced2ea;f14d8439e6a051b10dd78148f7fa615c SAMEA3206731 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925037/ERR925037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925037/ERR925037_2.fastq.gz 1386022 WGS GPS_ZA_carriage_SP121-sc-2191665 RANDOM 44683232;46003298 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925037/ERR925037_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925037/ERR925037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925037/15995_1#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925037/15995_1#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925037/ERR925037_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925037/ERR925037_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925037/15995_1#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925037/15995_1#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72464251;2240 ERS638741 ERX1004312 GENOMIC 13240993 138602200 2015-06-23 SC_RUN_15995_1#11 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925037/15995_1#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925037/15995_1#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#11 ERR913118 SC_EXP_15873_1#61 206 1949234a383c480ba2cfbabf0441453f;2ea8908d01afecf6ba374a8d330cc67c 1313 37ee34b888d14c87dcd51da21ab07992;07fb48f67fe96f831dcd634a24c5a35f SAMEA3207161 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913118/ERR913118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913118/ERR913118_2.fastq.gz 4994448 WGS GPS_ZA_carriage_SP531-sc-2192099 RANDOM 158637847;166393257 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913118/ERR913118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913118/ERR913118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913118/15873_1#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913118/15873_1#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913118/ERR913118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913118/ERR913118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913118/15873_1#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913118/15873_1#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264520014;7908 ERS639171 ERX992242 GENOMIC 13227589 499444800 2015-06-17 SC_RUN_15873_1#61 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913118/15873_1#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913118/15873_1#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#61 ERR909053 SC_EXP_15841_3#14 225 2e7e40ec58c7b5a131facc70261dc168;ff978adf39316f320de8a134142f2eea 1313 b22137b5eb93d68fa20b2a03bab5a442;6ef624bafcd56ad5a0cdc86841d5526c SAMEA3208660 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909053/ERR909053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909053/ERR909053_2.fastq.gz 4902736 WGS GPS_ZA_carriage_SP727-sc-2204794 RANDOM 152289555;157377407 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909053/ERR909053_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909053/ERR909053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909053/15841_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909053/15841_3#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909053/ERR909053_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909053/ERR909053_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909053/15841_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909053/15841_3#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249563310;7751 ERS639762 ERX988308 GENOMIC 13267849 490273600 2015-06-09 SC_RUN_15841_3#14 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909053/15841_3#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909053/15841_3#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#14 ERR773904 SC_EXP_14913_2#90 226 e2ab50d0758e12d8e35a7bc8282a892a;d2dbd63afa46889655a192d8e6af588d 1313 d9094cbb48304beb9fb94da00d8be315;d23f6d8cc78706f17391e8fa50575c18 SAMEA2814184 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773904/ERR773904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773904/ERR773904_2.fastq.gz 5180906 WGS GPS_ZA_2322-sc-2022669 RANDOM 175200832;181401797 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773904/ERR773904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773904/ERR773904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773904/14913_2#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773904/14913_2#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773904/ERR773904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773904/ERR773904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773904/14913_2#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773904/14913_2#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291375808;8311 ERS566552 ERX716783 GENOMIC 12395907 518090600 2015-03-03 SC_RUN_14913_2#90 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773904/14913_2#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773904/14913_2#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#90 ERR909020 SC_EXP_15841_2#76 229 4220e227ebcc967c27240852e1de51ac;f6cbbba18f3c476ba3d1ebd9f0549401 1313 bb350d37270f7f78e01ad86d51f12f7d;db3a823bf31765a49e61fdc0927e9ad3 SAMEA3207272 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909020/ERR909020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909020/ERR909020_2.fastq.gz 5699212 WGS GPS_ZA_carriage_SP616-sc-2192210 RANDOM 186333835;192675507 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909020/ERR909020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909020/ERR909020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909020/15841_2#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909020/15841_2#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909020/ERR909020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909020/ERR909020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909020/15841_2#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909020/15841_2#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307382885;8998 ERS639282 ERX988275 GENOMIC 13265125 569921200 2015-06-09 SC_RUN_15841_2#76 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909020/15841_2#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909020/15841_2#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#76 ERR774083 SC_EXP_14913_4#81 230 47ec8f1cece262e3b8e8591c5b5cb5d6;796702851d5c442469a7f5f6d08672f2 1313 07cd498a875e1a11d046e36d0d15ef36;904c3cdb728bac8f9161a769ca53edd4 SAMEA2814196 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774083/ERR774083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774083/ERR774083_2.fastq.gz 4825200 WGS GPS_ZA_2408-sc-2022682 RANDOM 160675565;167528245 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774083/ERR774083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774083/ERR774083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774083/14913_4#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774083/14913_4#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774083/ERR774083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774083/ERR774083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774083/14913_4#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774083/14913_4#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268245290;7687 ERS566564 ERX716962 GENOMIC 12395991 482520000 2015-03-03 SC_RUN_14913_4#81 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774083/14913_4#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774083/14913_4#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#81 ERR774195 SC_EXP_14913_6#6 223 71d7d67c3a963000f441caac50f37f71;d7c43847b8c4bc730a9c0228b8ecf534 1313 be1e7cfd8db95643dfa7d16623511ec5;afe3369cabeab141b78e5bcf1b48b098 SAMEA2814501 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774195/ERR774195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774195/ERR774195_2.fastq.gz 4662520 WGS GPS_ZA_2713-sc-2138297 RANDOM 146943037;155035374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774195/ERR774195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774195/ERR774195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774195/14913_6#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774195/14913_6#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774195/ERR774195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774195/ERR774195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774195/14913_6#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774195/14913_6#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245423731;7412 ERS566869 ERX717074 GENOMIC 12334856 466252000 2015-03-03 SC_RUN_14913_6#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774195/14913_6#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774195/14913_6#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#6 ERR742652 SC_EXP_14673_4#56 209 34e111aa3c4c1c591bff76c22e16ae27;bc2e3a3cc20cc379b5f5f921684e24f1 1313 125b3d6ae914f702fda3b97b8f297691;67e5477c1ea7dd8b5d1c4acbda3d6a84 SAMEA2796749 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742652/ERR742652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742652/ERR742652_2.fastq.gz 5056984 WGS GPS_US_2010220290_R1-sc-2138733 RANDOM 161933240;167214996 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742652/ERR742652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742652/ERR742652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742652/14673_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742652/14673_4#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742652/ERR742652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742652/ERR742652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742652/14673_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742652/14673_4#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266999729;8185 ERS558360 ERX686335 GENOMIC 12062059 505698400 2015-01-27 SC_RUN_14673_4#56 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742652/14673_4#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742652/14673_4#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#56 ERR730912 SC_EXP_14566_6#57 237 e12358b4cadfca9fa8b78bf88a4f5808;47ac5d72d989a1f77d8ce268ee0d2ce4 1313 5313e92fcf49ad73692ef6f9c25d8edc;ce59e198ed9536de8e147b18cfa12b56 SAMEA2659011 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730912/ERR730912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730912/ERR730912_2.fastq.gz 4828766 WGS GPS_ZA_2004-sc-2021649 RANDOM 146540680;152146137 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730912/ERR730912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730912/ERR730912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730912/14566_6#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730912/14566_6#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730912/ERR730912_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730912/ERR730912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730912/14566_6#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730912/14566_6#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243204360;7838 ERS509039 ERX674858 GENOMIC 11887107 482876600 2015-01-14 SC_RUN_14566_6#57 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730912/14566_6#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730912/14566_6#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#57 ERR742607 SC_EXP_14673_4#11 209 74549de4f11913696f6f5ce7b0225eae;a14d3f98e4bedb1cbf78e8ada238d171 1313 f8f328c6c736fe270b4e6b161b03e166;93f7478e58068c2d9068b5b40f59c26c SAMEA2796704 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742607/ERR742607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742607/ERR742607_2.fastq.gz 4798358 WGS GPS_US_2009209135_R1-sc-2138688 RANDOM 156053862;160672827 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742607/ERR742607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742607/ERR742607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742607/14673_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742607/14673_4#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742607/ERR742607_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742607/ERR742607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742607/14673_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742607/14673_4#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257747438;7589 ERS558315 ERX686290 GENOMIC 12061994 479835800 2015-01-27 SC_RUN_14673_4#11 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742607/14673_4#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742607/14673_4#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#11 ERR714610 SC_EXP_14412_1#73 235 054f1462edb91e968acdc67a74ba61c1;f19bd24e159e28db50033817e3244f0c 1313 72c0cc9fe43641441a7c58717e2097c1;d10975a60a4ec28e4d3aa38bebef1ca6 SAMEA2658788 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714610/ERR714610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714610/ERR714610_2.fastq.gz 5036818 WGS GPS_ZA_1735-sc-2021397 RANDOM 185045263;186983646 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714610/ERR714610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714610/ERR714610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714610/14412_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714610/14412_1#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714610/ERR714610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714610/ERR714610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714610/14412_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714610/14412_1#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305356131;8040 ERS508816 ERX658532 GENOMIC 11839031 503681800 2015-01-08 SC_RUN_14412_1#73 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714610/14412_1#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714610/14412_1#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#73 ERR714722 SC_EXP_14412_2#90 223 d78d9e389fe13b020d97d894c975bfb0;f690feb6d9a4371bd4f9357f2fed6e4e 1313 98b1b9854685c964527c9e2a33fa4ad3;4ceb17e39070e5ec35317727c75a4bba SAMEA2658913 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714722/ERR714722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714722/ERR714722_2.fastq.gz 4249616 WGS GPS_ZA_1942-sc-2021550 RANDOM 148775451;150562147 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714722/ERR714722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714722/ERR714722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714722/14412_2#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714722/14412_2#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714722/ERR714722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714722/ERR714722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714722/14412_2#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714722/14412_2#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245270498;6934 ERS508941 ERX658644 GENOMIC 11882978 424961600 2015-01-08 SC_RUN_14412_2#90 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714722/14412_2#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714722/14412_2#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#90 ERR633082 SC_EXP_13415_8#60 232 cf10d8dace9e67900e18ce8d1e14bb99;ab9f1f59c708995e0b8073ace57b191e 1313 0860088337675f59060f6688914175e4;2d8789f482091e77abf1bb26393d9f10 SAMEA2554267 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633082/ERR633082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633082/ERR633082_2.fastq.gz 4912720 WGS GPS_ZA_1156-sc-1951305 RANDOM 164114788;167358282 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633082/ERR633082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633082/ERR633082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633082/13415_8#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633082/13415_8#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633082/ERR633082_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633082/ERR633082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633082/13415_8#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633082/13415_8#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273326386;8048 ERS464768 ERX589636 GENOMIC 10663349 491272000 2014-09-23 SC_RUN_13415_8#60 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633082/13415_8#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633082/13415_8#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#60 ERR701816 SC_EXP_14257_1#39 234 edb34363030c8ccee309d8ff6cdcc182;a8e7e5e0113b1801ec22a0caa5c711d4 1313 54e07b7ae8e3c8c23599828b589c5ab0;186444193b2d6b78321d132f405fb833 SAMEA2658381 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701816/ERR701816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701816/ERR701816_2.fastq.gz 5731140 WGS GPS_ZA_1416-sc-2020986 RANDOM 184174531;188655100 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701816/ERR701816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701816/ERR701816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701816/14257_1#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701816/14257_1#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701816/ERR701816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701816/ERR701816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701816/14257_1#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701816/14257_1#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 306099161;9345 ERS508409 ERX646079 GENOMIC 11814782 573114000 2014-12-16 SC_RUN_14257_1#39 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701816/14257_1#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701816/14257_1#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#39 ERR600215 SC_EXP_13414_2#83 233 fcf9e52a95b0e2f85bb08d29491264ae;e6bed965d11901ebdfce6f6a2bd420d6 1313 11b58a71c7a6a2057b028074a4833998;5b31e458ece86e420cbc5a6fc237d2f9 SAMEA2521634 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600215/ERR600215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600215/ERR600215_2.fastq.gz 4603262 WGS 2012211938-sc-1946926 RANDOM 154522079;159299771 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600215/ERR600215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600215/ERR600215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600215/13414_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600215/13414_2#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600215/ERR600215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600215/ERR600215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600215/13414_2#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600215/13414_2#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257769020;7516 ERS455174 ERX557044 GENOMIC 10600528 460326200 2014-09-16 SC_RUN_13414_2#83 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600215/13414_2#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600215/13414_2#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#83 ERR600196 SC_EXP_13414_2#63 233 582c0f6bf7b2dcead8727483b521e929;aacbbce65adae833ccee98569c80bbba 1313 3739b474626f8ac06325d4877ab039e2;d231561f28e57c15e0c5a2d7349eabbd SAMEA2521614 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600196/ERR600196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600196/ERR600196_2.fastq.gz 5090336 WGS 2012220439-sc-1946906 RANDOM 169195407;175146454 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600196/ERR600196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600196/ERR600196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600196/13414_2#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600196/13414_2#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600196/ERR600196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600196/ERR600196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600196/13414_2#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600196/13414_2#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283675944;8356 ERS455154 ERX557025 GENOMIC 10600573 509033600 2014-09-16 SC_RUN_13414_2#63 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600196/13414_2#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600196/13414_2#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#63 ERR596414 SC_EXP_13353_7#69 259 86126c56da62209e9586161b29f47354;06587a56da4ebb924b7c391324e1fd7b 1313 9f7e0cfd1296c8353736e7c5123ac745;0499bb382c90607cdb155b6343dfd483 SAMEA2521810 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596414/ERR596414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596414/ERR596414_2.fastq.gz 10734518 WGS 2012219806-sc-1947104 RANDOM 341959198;351782007 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596414/ERR596414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596414/ERR596414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596414/13353_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596414/13353_7#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596414/ERR596414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596414/ERR596414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596414/13353_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596414/13353_7#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 576275542;17036 ERS455350 ERX553377 GENOMIC 10552890 1073451800 2014-09-09 SC_RUN_13353_7#69 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596414/13353_7#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596414/13353_7#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#69 ERR577981 SC_EXP_13091_6#38 242 b11f3d4eaa5d6237a0de2f39c8b56860;205dabd5cabac8884209761576de3ac0 1313 f1f58488eef5aa2224c2c399d61419fb;9acf7ca5b35f76fbe27749e626467f86 SAMEA2467488 2014-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577981/ERR577981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577981/ERR577981_2.fastq.gz 4311666 WGS PATH3541-sc-1926273 RANDOM 150696972;152159660 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577981/ERR577981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577981/ERR577981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577981/13091_6#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577981/13091_6#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577981/ERR577981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577981/ERR577981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577981/13091_6#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577981/13091_6#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248046989;7018 ERS437245 ERX536157 GENOMIC 10228135 431166600 2014-08-12 SC_RUN_13091_6#38 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577981/13091_6#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577981/13091_6#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA346681 13091_6#38 ERR490787 SC_EXP_12162_1#83 223 1f3a988dd334f95d16ca89a9e2f36460;ea096f852ca87316b8059bcfbacaf5ae 1313 57df63095d6cf05f99d40fb7e672c156;19ac7e602d65ce09ddc6460a7119856f SAMEA2298360 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490787/ERR490787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490787/ERR490787_2.fastq.gz 4068646 WGS SA_GPS_SP294-sc-1810571 RANDOM 126241580;133806931 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490787/ERR490787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490787/ERR490787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490787/12162_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490787/12162_1#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490787/ERR490787_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490787/ERR490787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490787/12162_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490787/12162_1#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 213269573;6596 ERS390818 ERX456241 GENOMIC 9340476 406864600 2014-04-28 SC_RUN_12162_1#83 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490787/12162_1#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490787/12162_1#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12162_1#83 ERR568691 SC_EXP_12837_4#2 226 54200660aba22de6d033f72f23d5e3df;5df28c6744b770ff0d560da71b502a36 1313 1a945b04aaf81f320f31f05d3700da67;7c3410d8b0e8f9a3df1887f1c87552ce SAMEA2434678 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568691/ERR568691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568691/ERR568691_2.fastq.gz 5268516 WGS SA_GPS_SP573-sc-1895743 RANDOM 182468448;185857560 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568691/ERR568691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568691/ERR568691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568691/12837_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568691/12837_4#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568691/ERR568691_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568691/ERR568691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568691/12837_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568691/12837_4#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305310094;8631 ERS428855 ERX527680 GENOMIC 9986205 526851600 2014-07-23 SC_RUN_12837_4#2 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568691/12837_4#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568691/12837_4#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_4#2 ERR505546 SC_EXP_12291_1#89 213 e1c9789ae8d617b9d1aded3efbab6b51;0656b5ca2aa89d18621d4a4d92f4ca5e 1313 c22d888e34d1bd1ea6620499635b6f05;ecb1651db3d850fba54a12fb74deed52 SAMEA2335750 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505546/ERR505546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505546/ERR505546_2.fastq.gz 5496236 WGS PATH2741-sc-1810675 RANDOM 174903222;181877048 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505546/ERR505546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505546/ERR505546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505546/12291_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505546/12291_1#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505546/ERR505546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505546/ERR505546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505546/12291_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505546/12291_1#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 292554990;8905 ERS393944 ERX470903 GENOMIC 9441107 549623600 2014-05-19 SC_RUN_12291_1#89 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505546/12291_1#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505546/12291_1#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#89 ERR461214 SC_EXP_11860_7#23 206 56ef3d5759fa29abbdc4580096e2243a;142a3d056e3d36fa1cc1b58880dc0a83 1313 28d4ec925c8d20fbc5a56872803c117b;bb6ec3ec823478525251c1782f013532 SAMEA2239064 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461214/ERR461214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461214/ERR461214_2.fastq.gz 4310206 WGS 991145-sc-2013-11-05T12:07:19Z-1750433 RANDOM 137172602;143911692 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461214/ERR461214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461214/ERR461214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461214/11860_7#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461214/11860_7#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461214/ERR461214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461214/ERR461214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461214/11860_7#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461214/11860_7#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 230302040;7090 ERS367876 ERX427555 GENOMIC 9014950 431020600 2014-03-18 SC_RUN_11860_7#23 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461214/11860_7#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461214/11860_7#23.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#23 ERR461351 SC_EXP_11860_8#69 222 520db9fd468469e6782275284368959a;8af73ddc1d77f4da7c4a96b697a6e5f6 1313 3e0b824f13cd4f219a4a5ebbc5b4bae7;5d847d14395faf9fc7c65c46020b7964 SAMEA2239201 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461351/ERR461351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461351/ERR461351_2.fastq.gz 3751142 WGS 2002096-sc-2013-11-05T12:09:42Z-1750572 RANDOM 117507469;121880140 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461351/ERR461351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461351/ERR461351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461351/11860_8#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461351/11860_8#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461351/ERR461351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461351/ERR461351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461351/11860_8#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461351/11860_8#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 196487536;6204 ERS368013 ERX427692 GENOMIC 9015321 375114200 2014-03-18 SC_RUN_11860_8#69 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461351/11860_8#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461351/11860_8#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#69 ERR461296 SC_EXP_11860_8#12 222 da9a47ea8a0f3c92e45f2797829459f0;951786d42275cec236d9fc33408c6972 1313 7e52a2bc244d04ebc5e68d1df7904748;58b05a524f0fba72ce7612f4a10ceced SAMEA2239146 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461296/ERR461296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461296/ERR461296_2.fastq.gz 4684860 WGS 2000830-sc-2013-11-05T12:08:41Z-1750517 RANDOM 149387092;157130259 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461296/ERR461296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461296/ERR461296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461296/11860_8#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461296/11860_8#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461296/ERR461296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461296/ERR461296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461296/11860_8#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461296/11860_8#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 252258870;7634 ERS367958 ERX427637 GENOMIC 9015302 468486000 2014-03-18 SC_RUN_11860_8#12 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461296/11860_8#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461296/11860_8#12.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#12 ERR461284 SC_EXP_11860_7#95 206 4a8080243e759fd2a348939694255778;31129e6a851066a49145f5045c46ccd5 1313 bde38572815cfb2fb78b0c2890eb320d;f10b7b86f93d2948f171fe6f15922b76 SAMEA2239134 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461284/ERR461284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461284/ERR461284_2.fastq.gz 4619292 WGS 2000443-sc-2013-11-05T12:08:29Z-1750505 RANDOM 147068223;154266360 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461284/ERR461284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461284/ERR461284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461284/11860_7#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461284/11860_7#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461284/ERR461284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461284/ERR461284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461284/11860_7#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461284/11860_7#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 248029383;7596 ERS367946 ERX427625 GENOMIC 9014959 461929200 2014-03-18 SC_RUN_11860_7#95 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461284/11860_7#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461284/11860_7#95.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR433901 SC_EXP_11658_2#49 231 d611947dc42af393b1ffe34936d89ac4;de06dc0e0250e9828f679b6a1715bf67 1313 4f61cefa9f4737a6e0dd44d26bd81832;b6f17ba77465692245003afd2c6f3d4b SAMEA2204032 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433901/ERR433901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433901/ERR433901_2.fastq.gz 5194664 WGS 2009217663-sc-2013-10-09T11:54:00Z-1712623 RANDOM 166574830;174003559 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433901/ERR433901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433901/ERR433901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433901/11658_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433901/11658_2#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433901/ERR433901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433901/ERR433901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433901/11658_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433901/11658_2#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279207371;8637 ERS356543 ERX400176 GENOMIC 8593309 519466400 2014-02-18 SC_RUN_11658_2#49 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433901/11658_2#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433901/11658_2#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#49 ERR433635 SC_EXP_11657_4#36 219 183836ec6a858d30cb15b3298a23d55c;24fb6dd922ff4c68bce0e6452c55fbce 1313 91d50d3fc29aa7106ee5e4074ed861ea;f37a9b2e006f101493177409ef52a8ce SAMEA2203917 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433635/ERR433635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433635/ERR433635_2.fastq.gz 3851542 WGS 2009211089-sc-2013-10-09T11:51:48Z-1712507 RANDOM 128458193;132823592 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433635/ERR433635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433635/ERR433635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433635/11657_4#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433635/11657_4#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433635/ERR433635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433635/ERR433635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433635/11657_4#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433635/11657_4#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 213791911;6287 ERS356428 ERX399910 GENOMIC 8529804 385154200 2014-02-18 SC_RUN_11657_4#36 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433635/11657_4#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433635/11657_4#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_4#36 ERR425475 SC_EXP_11511_8#38 288 7d274726be233f574dbce9ca0a25bc78;70f47d19918d386b58322dcb67225f1f 1313 4966f68d3bbd6f4191386befc3bea7d2;8e4cfd3d5f964da2bc5b5c51748d0e05 SAMEA2203891 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425475/ERR425475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425475/ERR425475_2.fastq.gz 4082756 WGS 2009212157-sc-2013-10-09T11:51:18Z-1712481 RANDOM 133773272;137710625 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425475/ERR425475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425475/ERR425475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425475/11511_8#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425475/11511_8#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425475/ERR425475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425475/ERR425475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425475/11511_8#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425475/11511_8#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 221181751;6778 ERS356395 ERX391750 GENOMIC 8529247 408275600 2014-02-10 SC_RUN_11511_8#38 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425475/11511_8#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425475/11511_8#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_8#38 ERR064166 SC_EXP_6949_2#4 257 f3dd75f7fc44c5cad25163764bbe3cc3 1313 1b2004883243b501210301e824c5c9f6;98316ecc8375c33629f1701c1db96779 SAMEA1028955 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064166/ERR064166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064166/ERR064166_2.fastq.gz 4131091 WGS SMRU2428-sc-2011-01-27-1062641 RANDOM 212503532;221761402 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064166/ERR064166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064166/ERR064166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064166/6949_2#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064166/ERR064166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064166/ERR064166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064166/6949_2#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 552660931 ERS021938 ERX042139 GENOMIC 3660705 619663650 2012-03-19 SC_RUN_6949_2#4 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064166/6949_2#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063990 SC_EXP_6925_6#13 232 c886d4d0815704bc7fa4968c716989e3 1313 00050833da13c0e68f995c0568f0e7e4;59c12751bcda171f59544e3c5bcf108a SAMEA1026198 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063990/ERR063990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063990/ERR063990_2.fastq.gz 3189938 WGS SMRU2197-sc-2011-01-27-1062410 RANDOM 188747493;187547645 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063990/ERR063990_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063990/ERR063990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063990/6925_6#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063990/ERR063990_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063990/ERR063990_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063990/6925_6#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 483351115 ERS021706 ERX041963 GENOMIC 3611011 478490700 2012-01-05 SC_RUN_6925_6#13 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063990/6925_6#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063972 SC_EXP_6925_5#19 235 07b525046456ecc1f12d90de08d54591 1313 1a963adb20226d0c671264faadb4f059;cc9e124a4444dba06a60f9ea7160d993 SAMEA1025891 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063972/ERR063972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063972/ERR063972_2.fastq.gz 4336384 WGS SMRU2179-sc-2011-01-27-1062392 RANDOM 257878857;254307606 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063972/ERR063972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063972/ERR063972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063972/6925_5#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063972/ERR063972_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063972/ERR063972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063972/6925_5#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 661295438 ERS021689 ERX041945 GENOMIC 3610975 650457600 2012-01-05 SC_RUN_6925_5#19 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063972/6925_5#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048011 SC_EXP_6630_3#22 217 621b74fd05b4d0382e188bf129a35341 1313 a261142907dea120449f8e425533fb46;cdcde51ff3844dd5fb6c1dc11a2802ec SAMEA1023755 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048011/ERR048011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048011/ERR048011_2.fastq.gz 3148530 WGS SMRU382-sc-2011-01-27-1060571 RANDOM 188191499;187926068 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048011/ERR048011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048011/ERR048011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048011/6630_3#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048011/ERR048011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048011/ERR048011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048011/6630_3#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 473327313 ERS019540 ERX025074 GENOMIC 2952169 472279500 2011-10-11 SC_RUN_6630_3#22 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048011/6630_3#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054647 SC_EXP_6755_6#19 249 fe465c0d6b3017fce8152a99948f5695 1313 d75ca25aa723997b066a2a050c6cd8f0;2d0e99f84180387af3f8cee403f2337f SAMEA1025384 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054647/ERR054647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054647/ERR054647_2.fastq.gz 6885179 WGS SMRU1196-sc-2011-01-27-1061409 RANDOM 367901387;385270846 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054647/ERR054647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054647/ERR054647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054647/6755_6#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054647/ERR054647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054647/ERR054647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054647/6755_6#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 940269819 ERS020706 ERX031693 GENOMIC 3308043 1032776850 2011-11-15 SC_RUN_6755_6#19 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054647/6755_6#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054377 SC_EXP_6736_7#12 243 79dcc68e01e4395d6921cac4b1c3c786 1313 615ae2a0644c772a88e7ce8ba06d2d16;7074dc2f4ec442db2b5b2252de283fa2 SAMEA1025518 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054377/ERR054377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054377/ERR054377_2.fastq.gz 7892163 WGS SMRU1284-sc-2011-01-27-1061497 RANDOM 445835759;468238589 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054377/ERR054377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054377/ERR054377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054377/6736_7#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054377/ERR054377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054377/ERR054377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054377/6736_7#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1075154254 ERS020794 ERX031423 GENOMIC 3308131 1183824450 2011-11-15 SC_RUN_6736_7#12 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054377/6736_7#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054351 SC_EXP_6736_6#10 247 c0558a4e7af40fe6f254a209499cdb37 1313 1ffce6f53f4cf4e6f50cb559c6bef563;c8299db247bf85d59ad16dea9ce485a6 SAMEA1025138 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054351/ERR054351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054351/ERR054351_2.fastq.gz 5063717 WGS SMRU1258-sc-2011-01-27-1061471 RANDOM 271349730;286808897 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054351/ERR054351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054351/ERR054351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054351/6736_6#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054351/ERR054351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054351/ERR054351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054351/6736_6#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 688046195 ERS020768 ERX031397 GENOMIC 3308105 759557550 2011-11-15 SC_RUN_6736_6#10 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054351/6736_6#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054461 SC_EXP_6753_3#1 216 d2cf13cc0cb302e412f8699f4c1e1e27 1313 63be29058f0ca8b1e570f19b53f4eb99;0e68ae0d4e09a9284d89a2df9b0eafbc SAMEA1025674 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054461/ERR054461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054461/ERR054461_2.fastq.gz 5091553 WGS SMRU1513-sc-2011-01-27-1061726 RANDOM 326637768;343918413 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054461/ERR054461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054461/ERR054461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054461/6753_3#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054461/ERR054461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054461/ERR054461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054461/6753_3#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 853073077 ERS021023 ERX031507 GENOMIC 3414198 763732950 2011-11-15 SC_RUN_6753_3#1 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054461/6753_3#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR057834 SC_EXP_6823_1#5 240 eb9c90722dbb559e884f8d30a6b720f1 1313 963500e0eeb00c99ec5b932aada26bd4;1332fedc538b853ee43147647ed5fc94 SAMEA1026142 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057834/ERR057834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057834/ERR057834_2.fastq.gz 4436534 WGS SMRU1853-sc-2011-01-27-1062066 RANDOM 275308525;287375719 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057834/ERR057834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057834/ERR057834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057834/6823_1#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057834/ERR057834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057834/ERR057834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057834/6823_1#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 719356075 ERS021363 ERX035680 GENOMIC 3469082 665480100 2012-03-22 SC_RUN_6823_1#5 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057834/6823_1#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR069592 SC_EXP_7011_3#6 205 cbbdf7df9869f2f88373f418460e864a 1313 a61f57b824a39bb19acb24933cb7fb69;ce5347409f9238ae83bee630fa860e81 SAMEA1029139 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069592/ERR069592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069592/ERR069592_2.fastq.gz 4270792 WGS SMRU2742-sc-2011-01-27-1062955 RANDOM 255754967;263169557 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069592/ERR069592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069592/ERR069592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069592/7011_3#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069592/ERR069592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069592/ERR069592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069592/7011_3#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 658943535 ERS022252 ERX047445 GENOMIC 3758412 640618800 2012-01-19 SC_RUN_7011_3#6 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069592/7011_3#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR056791 SC_EXP_6805_3#13 233 ee14958ff07c9179baf64f095f92d917 1313 b00efd881a9a1d08cdb4d8321668b2d4;b2dac136f8f922345ba3cdaa70d813c4 SAMEA1025680 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056791/ERR056791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056791/ERR056791_2.fastq.gz 7739865 WGS SMRU1453-sc-2011-01-27-1061666 RANDOM 411952254;424473568 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056791/ERR056791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056791/ERR056791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056791/6805_3#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056791/ERR056791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056791/ERR056791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056791/6805_3#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1051909153 ERS020963 ERX034635 GENOMIC 3441222 1160979750 2011-11-29 SC_RUN_6805_3#13 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056791/6805_3#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR066337 SC_EXP_6983_7#66 239 cca589d22412b4679b50579314abccf6 1313 2c210df4f4f13b2063d758da44b68a27;c9489729d3c5df6bfdedc8d3759cf0be SAMEA1029160 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066337/ERR066337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066337/ERR066337_2.fastq.gz 3666028 WGS SMRU2370-sc-2011-01-27-1062583 RANDOM 253984394;260683299 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066337/ERR066337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066337/ERR066337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066337/6983_7#66.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066337/ERR066337_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066337/ERR066337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066337/6983_7#66.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 649775575 ERS021879 ERX044200 GENOMIC 3596148 549904200 2012-03-19 SC_RUN_6983_7#66 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066337/6983_7#66.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR060020 SC_EXP_6840_3#16 234 67866243459f3704205318d17c8d1335 1313 2025a39ea321b09d8f351ef3b71967b5;60f7577f58bed5f36cc89668ee87360f SAMEA1026155 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060020/ERR060020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060020/ERR060020_2.fastq.gz 6933006 WGS SMRU1816-sc-2011-01-27-1062029 RANDOM 443498866;442338584 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060020/ERR060020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060020/ERR060020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060020/6840_3#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060020/ERR060020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060020/ERR060020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060020/6840_3#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1121623812 ERS021326 ERX037858 GENOMIC 3481348 1039950900 2012-03-22 SC_RUN_6840_3#16 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060020/6840_3#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR060000 SC_EXP_6840_1#20 232 5813740bbbf645c4975d9b23ae205b8d 1313 b3ef5e13724158f75eef92ffe683f35d;08b3f3027dd31dcb3675a675ccb169fc SAMEA1025937 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060000/ERR060000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060000/ERR060000_2.fastq.gz 5138916 WGS SMRU1772-sc-2011-01-27-1061985 RANDOM 326999997;326482201 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060000/ERR060000_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060000/ERR060000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060000/6840_1#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060000/ERR060000_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060000/ERR060000_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060000/6840_1#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 826798744 ERS021282 ERX037838 GENOMIC 3481289 770837400 2012-03-22 SC_RUN_6840_1#20 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060000/6840_1#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR045040 SC_EXP_6472_8#15 246 a5f9285deed4cde910eb9151ef699ac2 1313 51509389434dec51f20d6fa209c60ed1;76cf0b1efdf1dadd112fbbfa7b695640 SAMEA1026316 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045040/ERR045040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045040/ERR045040_2.fastq.gz 6835901 WGS UoS2298-sc-2011-02-14-1078243 RANDOM 346802037;356085189 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045040/ERR045040_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045040/ERR045040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045040/6472_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045040/ERR045040_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045040/ERR045040_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045040/6472_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 882738068 ERS023189 ERX022148 GENOMIC 2732411 1025385150 2011-09-06 SC_RUN_6472_8#15 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045040/6472_8#15.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_8#15 ERR044923 SC_EXP_6470_5#18 192 6d9c32afb65e72c867abf082dd4972d4 1313 c384db35a2cb2f1e4827c9785097f390;32d3f42d1f2ec7d64c20366b7c117ccd SAMEA1026492 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044923/ERR044923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044923/ERR044923_2.fastq.gz 5980472 WGS UoS0257-sc-2011-02-14-1078126 RANDOM 294639431;304652818 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044923/ERR044923_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044923/ERR044923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044923/6470_5#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044923/ERR044923_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044923/ERR044923_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044923/6470_5#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 784932968 ERS023072 ERX022031 GENOMIC 2719153 897070800 2011-09-06 SC_RUN_6470_5#18 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044923/6470_5#18.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_5#18 ERR059971 SC_EXP_6830_3#15 216 ea20503c1336ca16b07bd407df65c096 1313 de196016ff91e4aa0bde7e9accb481f3;42d4eb185b5ed08ec861dfba3f410508 SAMEA1025295 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059971/ERR059971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059971/ERR059971_2.fastq.gz 7062835 WGS SMRU1647-sc-2011-01-27-1061860 RANDOM 457330005;467308081 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059971/ERR059971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059971/ERR059971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059971/6830_3#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059971/ERR059971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059971/ERR059971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059971/6830_3#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1165105230 ERS021157 ERX037809 GENOMIC 3414344 1059425250 2011-12-13 SC_RUN_6830_3#15 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR059/ERR059971/6830_3#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR2612103 SC_EXP_23164_8#143 420 3967900c3c0151692cf068655c6c5609;774be5afd6237eae08f9e43a9a54cf96 1313 a12e2f9daada6bb607a539bb129c5cf5;4bf42ec4bb77a95b27623b27b5e5b329 SAMEA4707880 2018-06-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/003/ERR2612103/ERR2612103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/003/ERR2612103/ERR2612103_2.fastq.gz 3154712 WGS bc8e1a10-4c55-11e7-acbd-3c4a9275d6c8 RANDOM 61256585;65521435 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/003/ERR2612103/ERR2612103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR261/003/ERR2612103/ERR2612103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612103/23164_8#143.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612103/23164_8#143.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/003/ERR2612103/ERR2612103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR261/003/ERR2612103/ERR2612103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612103/23164_8#143.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR261/ERR2612103/23164_8#143.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89727791;5233 ERS2528040 ERX2628758 GENOMIC DN488670S:H9 394339000 2018-06-04 SC_RUN_23164_8#143 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612103/23164_8#143.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR261/ERR2612103/23164_8#143.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA1508488 23164_8#143 ERR1947570 SC_EXP_21946_6#50 477 74cb4168521e821b119b878c06d37c86;95cdd884d9e87a549ee8176172c949b3 1313 669d4c951691cdb1aaa58f40e7d1043e;7d1a695cafe7d91942c361e799276834 SAMEA4561599 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947570/ERR1947570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947570/ERR1947570_2.fastq.gz 2181114 WGS 372d68b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 56595199;81471648 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947570/ERR1947570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947570/ERR1947570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947570/21946_6#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947570/21946_6#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947570/ERR1947570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947570/ERR1947570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947570/21946_6#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947570/21946_6#50.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 101707344;3716 ERS1460778 ERX2013357 GENOMIC 18471636 329348214 2017-04-25 SC_RUN_21946_6#50 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947570/21946_6#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947570/21946_6#50.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1288825 SC_EXP_18456_1#16 459 a57f95210344b43db296b94a9257f448;4aad9a81f31b0ed53d33c167794bde73 1313 68437bf361a855636fe509c1a1096f9b;a8d140cd0880cce1167f56fa740dd2c1 SAMEA3389200 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288825/ERR1288825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288825/ERR1288825_2.fastq.gz 2378640 WGS GPS_MW_154460-sc-2295673 RANDOM 56310165;49125984 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288825/ERR1288825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/005/ERR1288825/ERR1288825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288825/18456_1#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288825/18456_1#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/005/ERR1288825/ERR1288825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/005/ERR1288825/ERR1288825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288825/18456_1#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288825/18456_1#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74998574;4082 ERS725303 ERX1360431 GENOMIC 14970365 297330000 2016-02-23 SC_RUN_18456_1#16 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288825/18456_1#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288825/18456_1#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#16 ERR1192093 SC_EXP_17794_8#82 441 55e36031179f97456dd0fb6858f212ef;f55ea7350a923f2bea71587e391cb637 1313 65b5b70870f4b8ea8a8fec6ce7e0ae30;79431cf2f78d9d32d47c96bba5c0be3d SAMEA3381624 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192093/ERR1192093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192093/ERR1192093_2.fastq.gz 2815490 WGS GPS_GM_2135-sc-2279504 RANDOM 56430228;57263500 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192093/ERR1192093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192093/ERR1192093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192093/17794_8#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192093/17794_8#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192093/ERR1192093_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192093/ERR1192093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192093/17794_8#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192093/17794_8#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89162228;4730 ERS719883 ERX1265477 GENOMIC 14941553 351936250 2015-12-17 SC_RUN_17794_8#82 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192093/17794_8#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192093/17794_8#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#82 ERR1202308 SC_EXP_17870_8#48 447 0c280214d8a5b33aec3bf5e135a2953a;7bc06df0e2ff1c134c9aa8df5b2dada1 1313 a9e094b9c92602c99c1f5be2dd203571;e0f896c118ce39a6fe70711a8c108170 SAMEA3389903 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202308/ERR1202308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202308/ERR1202308_2.fastq.gz 2445242 WGS GPS_MW_D25537-sc-2296147 RANDOM 45029230;45391588 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202308/ERR1202308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202308/ERR1202308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202308/17870_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202308/17870_8#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202308/ERR1202308_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202308/ERR1202308_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202308/17870_8#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202308/17870_8#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67969511;4173 ERS726006 ERX1274550 GENOMIC 14977761 305655250 2016-01-12 SC_RUN_17870_8#48 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202308/17870_8#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202308/17870_8#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#48 ERR1192103 SC_EXP_17794_8#92 441 de36b43612b9ac03f491b4fc79f9bccb;242fe7cea3bdf8232c59f28fe05f7e72 1313 3bb7ef5e5c1c6e56840763086ae35a4f;fb720e04e8249ace160df93059b7d0c1 SAMEA3381639 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192103/ERR1192103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192103/ERR1192103_2.fastq.gz 2739452 WGS GPS_GM_2150-sc-2279519 RANDOM 54617843;55757140 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192103/ERR1192103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192103/ERR1192103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192103/17794_8#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192103/17794_8#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192103/ERR1192103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192103/ERR1192103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192103/17794_8#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192103/17794_8#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85816521;4563 ERS719898 ERX1265487 GENOMIC 14941578 342431500 2015-12-17 SC_RUN_17794_8#92 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192103/17794_8#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192103/17794_8#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#92 ERR1065191 SC_EXP_17059_6#80 444 0f4d17a1881af4e560cd75e2f296a7dd;c1615bda731f399f485f2451560dbfe9 1313 c78537870338941fe07614fe5ee01986;c8c90395c97572de55f41edad86059f1 SAMEA3353317 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065191/ERR1065191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065191/ERR1065191_2.fastq.gz 5432108 WGS GPS_ZA_carriage_SP1220-sc-2277915 RANDOM 99422657;101374541 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065191/ERR1065191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065191/ERR1065191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065191/17059_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065191/17059_6#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065191/ERR1065191_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065191/ERR1065191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065191/17059_6#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065191/17059_6#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165862413;8974 ERS707672 ERX1145341 GENOMIC 14397986 679013500 2015-10-13 SC_RUN_17059_6#80 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065191/17059_6#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065191/17059_6#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#80 ERR997697 SC_EXP_16399_7#76 213 d2a070ae6c75d6b31c167813c42d3716;a1c72b64161c14e139af6c6dfea4c567 1313 85c7e55c17e2234fca3e8585973c7eef;f55d087ae9a3561af5fe30574b3fb4cf SAMEA3309749 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997697/ERR997697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997697/ERR997697_2.fastq.gz 6784618 WGS GPS_GM_1767-sc-2206563 RANDOM 230053957;238556608 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997697/ERR997697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997697/ERR997697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997697/16399_7#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997697/16399_7#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997697/ERR997697_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997697/ERR997697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997697/16399_7#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997697/16399_7#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 383635734;10899 ERS686211 ERX1076733 GENOMIC 13843394 678461800 2015-09-04 SC_RUN_16399_7#76 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997697/16399_7#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997697/16399_7#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#76 ERR997572 SC_EXP_16399_6#31 220 aed9fd21b0bda4d2155b8c7e1c3076f2;c878f0ef2c23bf919462ac17b4b3d1e2 1313 f832b1072d58e5a4e5cfd44fd8ec2085;8b50fbfed6178ae05ba1c844507d6831 SAMEA3309609 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997572/ERR997572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997572/ERR997572_2.fastq.gz 5612168 WGS GPS_GM_1628-sc-2206411 RANDOM 189914654;196447154 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997572/ERR997572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997572/ERR997572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997572/16399_6#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997572/16399_6#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997572/ERR997572_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997572/ERR997572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997572/16399_6#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997572/16399_6#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 315763254;8952 ERS686071 ERX1076608 GENOMIC 13835440 561216800 2015-09-04 SC_RUN_16399_6#31 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997572/16399_6#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997572/16399_6#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#31 ERR997608 SC_EXP_16399_6#67 220 2dd459b711c83ed214e191bf55c9ae4f;1bbddb44868225dfdbc16b19c89abf10 1313 40a811609ecc48c769ca7641d13d5235;938c0adb00dae529b3fe60078d350101 SAMEA3309646 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997608/ERR997608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997608/ERR997608_2.fastq.gz 5308772 WGS GPS_GM_1665-sc-2206449 RANDOM 180298809;186897479 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997608/ERR997608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997608/ERR997608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997608/16399_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997608/16399_6#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997608/ERR997608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997608/ERR997608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997608/16399_6#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997608/16399_6#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 299210209;8494 ERS686108 ERX1076644 GENOMIC 13835397 530877200 2015-09-04 SC_RUN_16399_6#67 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997608/16399_6#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997608/16399_6#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#67 ERR997522 SC_EXP_16399_5#61 228 7a590d7023bf99913e0cf4fd897d6114;76e99c341e74be3eadf5c5f89928f41a 1313 0058fb8c75d60454c72d4594c3b465ef;a70a54b3cdffd91dd61ba121e415f797 SAMEA3309546 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997522/ERR997522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997522/ERR997522_2.fastq.gz 5108022 WGS GPS_GM_1565-sc-2206348 RANDOM 162369660;168177377 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997522/ERR997522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997522/ERR997522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997522/16399_5#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997522/16399_5#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997522/ERR997522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997522/ERR997522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997522/16399_5#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997522/16399_5#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266870126;8122 ERS686008 ERX1076558 GENOMIC 13835519 510802200 2015-09-04 SC_RUN_16399_5#61 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997522/16399_5#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997522/16399_5#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#61 ERR997481 SC_EXP_16399_5#20 228 77434991862cf969902fbc7ef30f1f19;3ad9057a0f3f324cdb22ffbdcbcb9dbd 1313 2ed870b610d5577be5cba43f3c0511c1;e2a6f02fd1cbfc8c2c9c176a35e75331 SAMEA3309557 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997481/ERR997481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997481/ERR997481_2.fastq.gz 4578624 WGS GPS_GM_1576-sc-2206359 RANDOM 147178603;153713209 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997481/ERR997481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997481/ERR997481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997481/16399_5#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997481/16399_5#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997481/ERR997481_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997481/ERR997481_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997481/16399_5#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997481/16399_5#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244175258;7268 ERS686019 ERX1076517 GENOMIC 13835502 457862400 2015-09-04 SC_RUN_16399_5#20 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997481/16399_5#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997481/16399_5#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#20 ERR997480 SC_EXP_16399_5#19 228 fc6ebd10d5b5de966b4065f711b201dd;aba2830530e4e55b6c5e5a8973bf9a6d 1313 73e9ec73a6d637e6a93b1d3f72af81d4;c30577e9ccda5e0dce32b12e0298d123 SAMEA3309551 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997480/ERR997480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997480/ERR997480_2.fastq.gz 4609106 WGS GPS_GM_1570-sc-2206353 RANDOM 148610393;155911535 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997480/ERR997480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997480/ERR997480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997480/16399_5#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997480/16399_5#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997480/ERR997480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997480/ERR997480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997480/16399_5#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997480/16399_5#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246729746;7354 ERS686013 ERX1076516 GENOMIC 13835490 460910600 2015-09-04 SC_RUN_16399_5#19 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997480/16399_5#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997480/16399_5#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#19 ERR997464 SC_EXP_16399_5#3 228 a41812a2638de570e5e096681c16ed33;542ac68efeec66c1ee34c89603b3e702 1313 4ca330840269f37c3db3225c26d070ba;3b881f5ac812d2409126394ef71116e7 SAMEA3309523 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997464/ERR997464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997464/ERR997464_2.fastq.gz 5125862 WGS GPS_GM_1543-sc-2206325 RANDOM 166275913;173677787 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997464/ERR997464_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997464/ERR997464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997464/16399_5#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997464/16399_5#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997464/ERR997464_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997464/ERR997464_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997464/16399_5#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997464/16399_5#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278582118;8166 ERS685985 ERX1076500 GENOMIC 13835488 512586200 2015-09-04 SC_RUN_16399_5#3 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997464/16399_5#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997464/16399_5#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#3 ERR984259 SC_EXP_16453_2#22 218 37ef3303544e472b1d1248ee36fe3ea2;e2bc5822bf5d7797f00ebc2ed252b545 1313 7c242564b7b08013ad2c92e818849701;c3958709ffb54267f81f0f22b4c580bd SAMEA3309776 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984259/ERR984259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984259/ERR984259_2.fastq.gz 6400360 WGS GPS_GM_1794-sc-2206590 RANDOM 109515112;115790288 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984259/ERR984259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984259/ERR984259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984259/16453_2#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984259/16453_2#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984259/ERR984259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984259/ERR984259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984259/16453_2#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984259/16453_2#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 192070142;10611 ERS686238 ERX1065480 GENOMIC 13843314 800045000 2015-08-18 SC_RUN_16453_2#22 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984259/16453_2#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984259/16453_2#22.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#22 ERR984252 SC_EXP_16453_2#15 218 7d5ff7563746dfd20f8e1335b24698c9;ad26b94254eed4185f251e742b937805 1313 d7d8d1b62a7e1509affe18aeb004de17;1a98fed27618693af71b66a9f8016b52 SAMEA3309769 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984252/ERR984252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984252/ERR984252_2.fastq.gz 6184622 WGS GPS_GM_1787-sc-2206583 RANDOM 105853781;111333682 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984252/ERR984252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984252/ERR984252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984252/16453_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984252/16453_2#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984252/ERR984252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984252/ERR984252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984252/16453_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984252/16453_2#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 185821284;10258 ERS686231 ERX1065473 GENOMIC 13843325 773077750 2015-08-18 SC_RUN_16453_2#15 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984252/16453_2#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984252/16453_2#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#15 ERR980293 SC_EXP_16288_8#20 202 f6007e99348d5389f7d27dc14b04ff30;f2fc0f741f0eb8d2816ac85d850dcbad 1313 af4a3b74be7ad78b748bc7ee285664fc;18a88c40adecd37c19e4b0d5bcb387df SAMEA3232786 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980293/ERR980293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980293/ERR980293_2.fastq.gz 4352460 WGS GPS_NP_1302-sc-2205698 RANDOM 148318421;144932038 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980293/ERR980293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980293/ERR980293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980293/16288_8#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980293/16288_8#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980293/ERR980293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980293/ERR980293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980293/16288_8#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980293/16288_8#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 237175863;6983 ERS653997 ERX1057165 GENOMIC 13301787 435246000 2015-08-12 SC_RUN_16288_8#20 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980293/16288_8#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980293/16288_8#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#20 ERR913072 SC_EXP_15873_1#14 206 2561b4f64373db49b536ce25da89fa62;0d466025466549caf46e4abceb736084 1313 1be19d9a7f14c069310e2180ec228135;ea16ee453a7d093a0d5ee423abedacc0 SAMEA3207101 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913072/ERR913072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913072/ERR913072_2.fastq.gz 4986120 WGS GPS_ZA_carriage_SP537-sc-2192038 RANDOM 156290016;162455558 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913072/ERR913072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913072/ERR913072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913072/15873_1#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913072/15873_1#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913072/ERR913072_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913072/ERR913072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913072/15873_1#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913072/15873_1#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257658073;8022 ERS639111 ERX992196 GENOMIC 13227595 498612000 2015-06-17 SC_RUN_15873_1#14 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913072/15873_1#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913072/15873_1#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#14 ERR870202 SC_EXP_15531_6#10 212 794843e73917b868c8c788b4ba096091;c13df46da0df794c6e531044df65e4af 1313 87cddf07b83703602dc0b5cb691f3256;c05e6b3c4b4d9bb8e248d3291cf98afa SAMEA3172945 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870202/ERR870202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870202/ERR870202_2.fastq.gz 3499348 WGS GPS_GM_1089-sc-2190504 RANDOM 133961747;126724761 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870202/ERR870202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870202/ERR870202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870202/15531_6#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870202/15531_6#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870202/ERR870202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870202/ERR870202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870202/15531_6#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870202/15531_6#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 216050052;5690 ERS627188 ERX949803 GENOMIC 12870029 349934800 2015-05-06 SC_RUN_15531_6#10 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870202/15531_6#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870202/15531_6#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#10 ERR870301 SC_EXP_15531_7#15 250 ad33840086cf23b021a90bfaa90f0a7d;0b7d076aad90c08ceb9a339d04747409 1313 e833f5f2d0a8fa4a276f06b021549d96;0c79ef7a0673e56032b03a41a70a7307 SAMEA3173053 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870301/ERR870301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870301/ERR870301_2.fastq.gz 3158518 WGS GPS_GM_1197-sc-2190613 RANDOM 106409738;98157876 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870301/ERR870301_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870301/ERR870301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870301/15531_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870301/15531_7#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870301/ERR870301_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870301/ERR870301_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870301/15531_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870301/15531_7#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164488298;5088 ERS627296 ERX949902 GENOMIC 12888725 315851800 2015-05-06 SC_RUN_15531_7#15 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870301/15531_7#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870301/15531_7#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_7#15 ERR862320 SC_EXP_15378_2#62 205 1da0f8e6ed5d69f6efb35fbfe16c2423;e3ff46dc0051a58f835abad88205a7a5 1313 8b4bd099d63038df55d4075b6887abb6;c1b0314b580a14518715351b1184e9d8 SAMEA3172953 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862320/ERR862320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862320/ERR862320_2.fastq.gz 2751716 WGS GPS_GM_1097-sc-2190512 RANDOM 80575642;84496053 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862320/ERR862320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862320/ERR862320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862320/15378_2#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862320/15378_2#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862320/ERR862320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862320/ERR862320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862320/15378_2#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862320/15378_2#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131671273;4528 ERS627196 ERX941970 GENOMIC 12810501 275171600 2015-04-21 SC_RUN_15378_2#62 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862320/15378_2#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862320/15378_2#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#62 ERR862428 SC_EXP_15378_3#75 191 60f678e71efb9f727ace8c940d551a00;88329ae0935cb4303c1cc92ee96134c1 1313 548c8f2c2ef8b720d62da32ffc710181;80704f231d238a6beaa1bb95d20fa6a3 SAMEA3171112 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862428/ERR862428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862428/ERR862428_2.fastq.gz 5934936 WGS GPS_MW_3106-sc-2139675 RANDOM 201276533;207425379 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862428/ERR862428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862428/ERR862428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862428/15378_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862428/15378_3#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862428/ERR862428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862428/ERR862428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862428/15378_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862428/15378_3#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 335908448;9724 ERS625503 ERX942078 GENOMIC 12815419 593493600 2015-04-21 SC_RUN_15378_3#75 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862428/15378_3#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862428/15378_3#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#75 ERR774593 SC_EXP_14936_5#29 211 70fcc4a32e20a9378159666d5c56d820;f9f9cd3bc5a74a5d43c70c3e9802865b 1313 4f6a515b43fed033eda98e75a46b22ed;0ef7f6133888e0dcf73234a7d3aedc51 SAMEA2783655 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774593/ERR774593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774593/ERR774593_2.fastq.gz 4314884 WGS GPS_MW_D34710_R1-sc-2022150 RANDOM 155992382;156655719 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774593/ERR774593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774593/ERR774593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774593/14936_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774593/14936_5#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774593/ERR774593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774593/ERR774593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774593/14936_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774593/14936_5#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257338391;6998 ERS553400 ERX717472 GENOMIC 12403515 431488400 2015-03-03 SC_RUN_14936_5#29 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774593/14936_5#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774593/14936_5#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#29 ERR730200 SC_EXP_14520_4#60 222 d4a85f6550ab4d45c0217c26835ff708;c04539b51aa401bca3b65e72f64f0e75 1313 001121ef250a3f081b923fde94084222;03bb837351bfda0caa47a39eed067a63 SAMEA2696343 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730200/ERR730200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730200/ERR730200_2.fastq.gz 5330444 WGS GPS_GM_0578-sc-2021797 RANDOM 198765298;202052076 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730200/ERR730200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730200/ERR730200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730200/14520_4#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730200/14520_4#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730200/ERR730200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730200/ERR730200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730200/14520_4#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730200/14520_4#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 331491457;8832 ERS524922 ERX674146 GENOMIC 11982786 533044400 2015-01-14 SC_RUN_14520_4#60 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730200/14520_4#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730200/14520_4#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#60 ERR730261 SC_EXP_14520_5#28 224 166b21af174b4b1c9f18447408ef8a41;87fab864c73ff9dd5b4802f94434d375 1313 c43b17b2a5307929c732a0205c819a68;a17ef7617fd8c6e894822aa7109c57f2 SAMEA2696412 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730261/ERR730261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730261/ERR730261_2.fastq.gz 5577338 WGS GPS_GM_0641-sc-2021867 RANDOM 204434057;208853051 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730261/ERR730261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730261/ERR730261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730261/14520_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730261/14520_5#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730261/ERR730261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730261/ERR730261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730261/14520_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730261/14520_5#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 341250650;9191 ERS524991 ERX674207 GENOMIC 11982879 557733800 2015-01-14 SC_RUN_14520_5#28 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730261/14520_5#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730261/14520_5#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#28 ERR461543 SC_EXP_11861_2#78 216 75137075dc6bba37a929b1e932ae6194;41427463cf5d02c99e115e1ae8881aa8 1313 04df2893917dce055995920c36ae203d;84dd8423fad47b411ff6086d739e0b17 SAMEA2238739 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461543/ERR461543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461543/ERR461543_2.fastq.gz 4659328 WGS 2100047-sc-2013-11-05T12:01:38Z-1750101 RANDOM 147772584;154611125 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461543/ERR461543_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461543/ERR461543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461543/11861_2#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461543/11861_2#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461543/ERR461543_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461543/ERR461543_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461543/11861_2#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461543/11861_2#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 246818962;7610 ERS367551 ERX427884 GENOMIC 9020923 465932800 2014-03-18 SC_RUN_11861_2#78 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461543/11861_2#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461543/11861_2#78.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#78 ERR048050 SC_EXP_6631_1#13 217 be709cea1fcf791464dbf21a2609c86b 1313 adcb4689f2080ef63d8f526ed15042c1;95be8d7f0b5e014f1bf277ac86c787da SAMEA1023940 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048050/ERR048050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048050/ERR048050_2.fastq.gz 6681826 WGS SMRU325-sc-2011-01-27-1060514 RANDOM 388691717;391011138 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048050/ERR048050_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048050/ERR048050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048050/6631_1#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048050/ERR048050_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048050/ERR048050_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048050/6631_1#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 971308716 ERS019483 ERX025113 GENOMIC 2952112 1002273900 2011-10-11 SC_RUN_6631_1#13 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048050/6631_1#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR433792 SC_EXP_11658_1#24 235 9feff964f8ff26567bfeefb527f927e4;a2f6094f4d3436e77909885b5eda5797 1313 8c11e8e540b72a006f8caa2fa3596149;b68b8eba68be4ea641f0b46bf8d138ba SAMEA2203274 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433792/ERR433792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433792/ERR433792_2.fastq.gz 3719764 WGS PNI0149-sc-2013-10-09T11:39:53Z-1708764 RANDOM 115383475;120372081 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433792/ERR433792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433792/ERR433792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433792/11658_1#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433792/11658_1#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433792/ERR433792_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433792/ERR433792_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433792/11658_1#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433792/11658_1#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 191207530;6034 ERS355778 ERX400067 GENOMIC 8640128 371976400 2014-02-18 SC_RUN_11658_1#24 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433792/11658_1#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433792/11658_1#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_1#24 ERR047968 SC_EXP_6630_2#3 233 7b52b872bcd852fbba877bbfd23578eb 1313 9afb76e1d6086a165e1f29904f268f35;e192e1d14f8de4ae23e780bad0ff6d5d SAMEA1023938 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047968/ERR047968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047968/ERR047968_2.fastq.gz 2426121 WGS SMRU291-sc-2011-01-27-1060480 RANDOM 146436690;148069274 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047968/ERR047968_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047968/ERR047968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047968/6630_2#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047968/ERR047968_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047968/ERR047968_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047968/6630_2#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 375942842 ERS019449 ERX025031 GENOMIC 2952078 363918150 2011-10-11 SC_RUN_6630_2#3 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047968/6630_2#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054644 SC_EXP_6755_6#16 249 f60ba90650c756438fad0c58cdb09822 1313 99a866011aad0a3a604efa98a15339e9;8291e95e24bdc8d5b5f13fa5085243c0 SAMEA1025252 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054644/ERR054644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054644/ERR054644_2.fastq.gz 7466542 WGS SMRU1193-sc-2011-01-27-1061406 RANDOM 397058038;416981365 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054644/ERR054644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054644/ERR054644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054644/6755_6#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054644/ERR054644_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054644/ERR054644_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054644/6755_6#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1025378341 ERS020703 ERX031690 GENOMIC 3308040 1119981300 2011-11-15 SC_RUN_6755_6#16 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054644/6755_6#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054393 SC_EXP_6736_8#4 242 78e055a4955a151362363e36eb95efbc 1313 2658695df60b4525bc427398bea6ca4f;4135de30ab2981cca70cb7624292802b SAMEA1025122 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054393/ERR054393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054393/ERR054393_2.fastq.gz 8809654 WGS SMRU1300-sc-2011-01-27-1061513 RANDOM 490694474;524077300 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054393/ERR054393_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054393/ERR054393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054393/6736_8#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054393/ERR054393_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054393/ERR054393_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054393/6736_8#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1244548475 ERS020810 ERX031439 GENOMIC 3308147 1321448100 2011-11-15 SC_RUN_6736_8#4 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054393/6736_8#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054366 SC_EXP_6736_7#1 243 51542a7e0b930eb05ba4d79102d5c184 1313 5908b3fe0983b615065b311976d84ebf;36ec0decc229c88ea7a73f62bc4afbd4 SAMEA1025464 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054366/ERR054366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054366/ERR054366_2.fastq.gz 8079306 WGS SMRU1273-sc-2011-01-27-1061486 RANDOM 415632555;443289622 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054366/ERR054366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054366/ERR054366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054366/6736_7#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054366/ERR054366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054366/ERR054366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054366/6736_7#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1100457953 ERS020783 ERX031412 GENOMIC 3308120 1211895900 2011-11-15 SC_RUN_6736_7#1 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054366/6736_7#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054332 SC_EXP_6736_5#15 250 c450ee1f14f645b59382fc17b5759073 1313 9593b80aa0a0155c559e7ff4b9a40d94;5fd3d84276286318d3f28ec2e4b9e430 SAMEA1025430 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054332/ERR054332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054332/ERR054332_2.fastq.gz 6089684 WGS SMRU1239-sc-2011-01-27-1061452 RANDOM 326512456;342654296 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054332/ERR054332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054332/ERR054332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054332/6736_5#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054332/ERR054332_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054332/ERR054332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054332/6736_5#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 845397218 ERS020749 ERX031378 GENOMIC 3308086 913452600 2011-11-15 SC_RUN_6736_5#15 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054332/6736_5#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054329 SC_EXP_6736_5#12 250 4890e44a7b411c9bc0e64a5161f1fe23 1313 e25b58decb8993a464fb1b161bc07c2b;473076c2587251aa43ec2f260073cb31 SAMEA1025414 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054329/ERR054329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054329/ERR054329_2.fastq.gz 7799197 WGS SMRU1236-sc-2011-01-27-1061449 RANDOM 430817974;450002255 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054329/ERR054329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054329/ERR054329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054329/6736_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054329/ERR054329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054329/ERR054329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054329/6736_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1088839736 ERS020746 ERX031375 GENOMIC 3308083 1169879550 2011-11-15 SC_RUN_6736_5#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054329/6736_5#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054475 SC_EXP_6753_3#15 216 94a1e6cc244a70e44841c4e12962ce67 1313 c8412024f5a4b5526b623247be64c020;61572f1e78d9714cd1662679b55fdb86 SAMEA1025618 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054475/ERR054475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054475/ERR054475_2.fastq.gz 5314047 WGS SMRU1527-sc-2011-01-27-1061740 RANDOM 341788644;360238261 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054475/ERR054475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054475/ERR054475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054475/6753_3#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054475/ERR054475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054475/ERR054475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054475/6753_3#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 896869430 ERS021037 ERX031521 GENOMIC 3414212 797107050 2011-11-15 SC_RUN_6753_3#15 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054475/6753_3#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054252 SC_EXP_6710_7#7 233 bf3f7af381d56dcf8dfbc368d3ac185b 1313 7531780371a4ce771cd1adb673c2fe45;fb358f799a60a7db83462ea31851da67 SAMEA1025455 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054252/ERR054252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054252/ERR054252_2.fastq.gz 8106246 WGS SMRU1375-sc-2011-01-27-1061588 RANDOM 471925242;495054622 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054252/ERR054252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054252/ERR054252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054252/6710_7#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054252/ERR054252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054252/ERR054252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054252/6710_7#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1199488047 ERS020885 ERX031298 GENOMIC 3348833 1215936900 2011-11-15 SC_RUN_6710_7#7 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054252/6710_7#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051598 SC_EXP_6731_3#20 214 b574aa83915a85d3c5b5a7f8d21872f2 1313 7d6f726bea47300511d127c34f22dc16;afda5f6fb16a67532833d7cf7609c57e SAMEA1024715 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051598/ERR051598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051598/ERR051598_2.fastq.gz 4142471 WGS SMRU1052-sc-2011-01-27-1061265 RANDOM 238282281;248371753 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051598/ERR051598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051598/ERR051598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051598/6731_3#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051598/ERR051598_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051598/ERR051598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051598/6731_3#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 614843919 ERS020562 ERX028646 GENOMIC 3246252 621370650 2011-11-02 SC_RUN_6731_3#20 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051598/6731_3#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051586 SC_EXP_6731_3#8 214 742c78a0a3955599f0946430c6d5f3ae 1313 a5a12bdf6296a433ccb34277ff0b07c0;e8d71fdaa6b4b8d14aceb3310a050b2c SAMEA1024817 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051586/ERR051586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051586/ERR051586_2.fastq.gz 4808146 WGS SMRU1040-sc-2011-01-27-1061253 RANDOM 273300615;285067041 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051586/ERR051586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051586/ERR051586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051586/6731_3#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051586/ERR051586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051586/ERR051586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051586/6731_3#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 705370582 ERS020550 ERX028634 GENOMIC 3246240 721221900 2011-11-02 SC_RUN_6731_3#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051586/6731_3#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051530 SC_EXP_6730_7#24 229 3a3de0bf1cfcb18237d775ab8258ed1a 1313 618ab81604587ff501e8be0e0a9028fe;f89bb755b4b8ff3756cbc2706a4895ba SAMEA1024997 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051530/ERR051530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051530/ERR051530_2.fastq.gz 3870483 WGS SMRU720-sc-2011-01-27-1060909 RANDOM 207720736;213234319 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051530/ERR051530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051530/ERR051530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051530/6730_7#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051530/ERR051530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051530/ERR051530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051530/6730_7#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 538502681 ERS020230 ERX028578 GENOMIC 3100222 580572450 2011-11-02 SC_RUN_6730_7#24 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051530/6730_7#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051595 SC_EXP_6731_3#17 214 5642c136fa6e32f1467459616c03db18 1313 e737c10737ea47241eb8d8b3edaabc8b;d9d4dd835621ec10578d2a2949d41f18 SAMEA1024938 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051595/ERR051595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051595/ERR051595_2.fastq.gz 3880222 WGS SMRU1049-sc-2011-01-27-1061262 RANDOM 223568877;232532238 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051595/ERR051595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051595/ERR051595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051595/6731_3#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051595/ERR051595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051595/ERR051595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051595/6731_3#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 572105466 ERS020559 ERX028643 GENOMIC 3246249 582033300 2011-11-02 SC_RUN_6731_3#17 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051595/6731_3#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051493 SC_EXP_6730_6#11 233 9338a025877e3b781f630ab7a2589cc6 1313 f9c14d38b3317065ce12a448297580cd;2a3b174a07b06e185fe9433c9168a0d8 SAMEA1024566 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051493/ERR051493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051493/ERR051493_2.fastq.gz 3015566 WGS SMRU683-sc-2011-01-27-1060872 RANDOM 165712905;173429954 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051493/ERR051493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051493/ERR051493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051493/6730_6#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051493/ERR051493_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051493/ERR051493_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051493/6730_6#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 437520276 ERS020193 ERX028541 GENOMIC 3100185 452334900 2011-11-02 SC_RUN_6730_6#11 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051493/6730_6#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR056799 SC_EXP_6805_3#21 233 2086812333c34e6f024dc90c3dbae59f 1313 ddad06b0a17547c53406eb2474141f5a;c557281bc08d575a4418b794cc7a6a07 SAMEA1025211 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056799/ERR056799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056799/ERR056799_2.fastq.gz 5483240 WGS SMRU1461-sc-2011-01-27-1061674 RANDOM 293335705;304239141 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056799/ERR056799_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056799/ERR056799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056799/6805_3#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056799/ERR056799_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056799/ERR056799_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056799/6805_3#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 761496883 ERS020971 ERX034643 GENOMIC 3441230 822486000 2011-11-29 SC_RUN_6805_3#21 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056799/6805_3#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR051480 SC_EXP_6730_5#22 234 8ce5075e61a620fc843c930a2a1d6ddd 1313 ea6767e5d34eb0bffd474725106a278c;eb926354a5d724077165e02be38b7530 SAMEA1024562 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051480/ERR051480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051480/ERR051480_2.fastq.gz 2459831 WGS SMRU670-sc-2011-01-27-1060859 RANDOM 144545382;151556656 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051480/ERR051480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051480/ERR051480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051480/6730_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051480/ERR051480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051480/ERR051480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051480/6730_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 378045358 ERS020180 ERX028528 GENOMIC 3100171 368974650 2011-11-02 SC_RUN_6730_5#22 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051480/6730_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR049122 SC_EXP_6649_8#20 219 abc225a87d06c1419984bbd11421b94b 1313 1c4682b9cc0110b48360cd1b5b1fff41;ad22f8380348b1bb34465faddaff880b SAMEA1024207 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049122/ERR049122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049122/ERR049122_2.fastq.gz 2933461 WGS SMRU188-sc-2011-01-27-1060377 RANDOM 164556785;170523673 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049122/ERR049122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049122/ERR049122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049122/6649_8#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049122/ERR049122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049122/ERR049122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049122/6649_8#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 423953790 ERS019346 ERX026189 GENOMIC 2950521 440019150 2011-10-18 SC_RUN_6649_8#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049122/6649_8#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR056730 SC_EXP_6775_2#24 201 120d8c33efc0e4f082c1161d3a72ebb3 1313 0dd2e4073abc914fab4da368d7dc616e;d7e49a93bc39a38a84e3ebca39bfd32e SAMEA1024572 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056730/ERR056730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056730/ERR056730_2.fastq.gz 4796935 WGS SMRU864-sc-2011-01-27-1061053 RANDOM 300944798;315093848 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056730/ERR056730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056730/ERR056730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056730/6775_2#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056730/ERR056730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056730/ERR056730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056730/6775_2#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 782437420 ERS020374 ERX034574 GENOMIC 3152385 719540250 2011-11-29 SC_RUN_6775_2#24 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056730/6775_2#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR057970 SC_EXP_6823_6#21 249 e27167468c78e05b76f0361ad723eb5c 1313 a705c19b7e73a286e65fbf660a0fa885;e3115edd2fca5b29d2a255a57e9b632e SAMEA1026098 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057970/ERR057970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057970/ERR057970_2.fastq.gz 6770149 WGS SMRU1989-sc-2011-01-27-1062202 RANDOM 420155794;435551707 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057970/ERR057970_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057970/ERR057970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057970/6823_6#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057970/ERR057970_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057970/ERR057970_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057970/6823_6#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1079650384 ERS021499 ERX035816 GENOMIC 3469218 1015522350 2012-03-22 SC_RUN_6823_6#21 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057970/6823_6#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR052606 SC_EXP_6714_7#5 225 081b20f2d301a166456b6acc3b18b0df 1313 76a0867d7eaec9da802791ad96c842fc;8fdaff81d279bdcdae29e6d5525299cb SAMEA1024864 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052606/ERR052606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052606/ERR052606_2.fastq.gz 5812783 WGS SMRU749-sc-2011-01-27-1060938 RANDOM 323940238;331888492 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052606/ERR052606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052606/ERR052606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052606/6714_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052606/ERR052606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052606/ERR052606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052606/6714_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 863307967 ERS020259 ERX029654 GENOMIC 3152258 871917450 2011-11-07 SC_RUN_6714_7#5 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052606/6714_7#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR326748 SC_EXP_9953_7#59 227 47cc05b7a9f804984a02d03a0d7abe03 1313 7e6db50697bf957f13c802d74ad5eb01;e28ad7b3212e9e8d78d1cdb7f5f6a66d SAMEA2059732 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326748/ERR326748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326748/ERR326748_2.fastq.gz 2478275 WGS PBCN0236-sc-2013-03-27T13:18:39Z-1603594 RANDOM 170513040;170276658 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326748/ERR326748_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326748/ERR326748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326748/9953_7#59.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326748/ERR326748_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326748/ERR326748_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326748/9953_7#59.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 463688952 ERS225729 ERX299848 GENOMIC 7376823 495655000 2013-08-14 SC_RUN_9953_7#59 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326748/9953_7#59.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#59 ERR326690 SC_EXP_9953_7#1 227 2c20c93330958261a1e7d965f9f70b9d 1313 49d4b700da388155e407a471e8ed94ff;a62a98b0f44b894167443a6b1ad9023e SAMEA2059402 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326690/ERR326690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326690/ERR326690_2.fastq.gz 2480375 WGS PBCN0140-sc-2013-03-27T13:17:40Z-1603535 RANDOM 170478292;171243405 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326690/ERR326690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326690/ERR326690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326690/9953_7#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326690/ERR326690_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326690/ERR326690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326690/9953_7#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 468077809 ERS225671 ERX299790 GENOMIC 7376792 496075000 2013-08-14 SC_RUN_9953_7#1 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326690/9953_7#1.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#1 ERR316842 SC_EXP_9789_4#89 231 5e816901a607eb6406f07330db671c79 1313 be51867f7f652de65b4dd21e09429c26;eb402ece524c34fa0656e8db0d674b1a SAMEA2050707 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316842/ERR316842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316842/ERR316842_2.fastq.gz 1372683 WGS 3230-sc-2013-02-18T14:46:35Z-1561979 RANDOM 91925768;106448842 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316842/ERR316842_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316842/ERR316842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316842/9789_4#89.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316842/ERR316842_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316842/ERR316842_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316842/9789_4#89.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273255378 ERS215193 ERX289990 GENOMIC 7125833 274536600 2013-07-22 SC_RUN_9789_4#89 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316842/9789_4#89.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_4#89 ERR2089548 SC_EXP_21999_8#103 463 0a0c66ea60ad6efc116a857be4d9ec5a;52127b8fef664d6a2e2e851dd8bb66bc 1313 04194580758a21d25390b142031225f6;7e2e6275e6fd21950d8cb981d988ce53 SAMEA104154813 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089548/ERR2089548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089548/ERR2089548_2.fastq.gz 1223566 WGS 79f47870-c37a-11e6-b158-3c4a9275d6c8 RANDOM 22768249;24475974 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089548/ERR2089548_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089548/ERR2089548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089548/21999_8#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089548/21999_8#103.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089548/ERR2089548_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089548/ERR2089548_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089548/21999_8#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089548/21999_8#103.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 31477668;2115 ERS1813831 ERX2146342 GENOMIC DN476960M:G2 152945750 2017-08-08 SC_RUN_21999_8#103 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089548/21999_8#103.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089548/21999_8#103.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#103 ERR2089533 SC_EXP_21999_8#88 432 cd6fb1649c579cd797dbfbca1a962744;ae95090d121cf436149988486322f8ff 1313 0ff122de9ffb6fcdc12be01789f869ac;9442a54d99e9713afb6f2f018ab85584 SAMEA104154803 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089533/ERR2089533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089533/ERR2089533_2.fastq.gz 3013342 WGS 72e0f270-c37a-11e6-b158-3c4a9275d6c8 RANDOM 51894700;55272917 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089533/ERR2089533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089533/ERR2089533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089533/21999_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089533/21999_8#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089533/ERR2089533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089533/ERR2089533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089533/21999_8#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089533/21999_8#88.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74160788;4955 ERS1813821 ERX2146327 GENOMIC DN476959T:H11 376667750 2017-08-08 SC_RUN_21999_8#88 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089533/21999_8#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089533/21999_8#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#88 ERR2089468 SC_EXP_21999_8#23 459 ea0657d5351d66e1959fa93061f8795d;7cd61191927ac54f6e34703c9290c7ab 1313 1d139c811e27dfcfbccfcbfecde5626e;e6f4e045ddc09ff44299613de2e8c882 SAMEA104154733 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089468/ERR2089468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089468/ERR2089468_2.fastq.gz 2218336 WGS 6fe73a70-c37a-11e6-b158-3c4a9275d6c8 RANDOM 39591424;41898758 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089468/ERR2089468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089468/ERR2089468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089468/21999_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089468/21999_8#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089468/ERR2089468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089468/ERR2089468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089468/21999_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089468/21999_8#23.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56528856;3755 ERS1813751 ERX2146262 GENOMIC DN476959T:G3 277292000 2017-08-08 SC_RUN_21999_8#23 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089468/21999_8#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089468/21999_8#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#23 ERR1947863 SC_EXP_21946_6#343 449 73a5571c4242df2032ec1133ce3a85c7;7316fc4c44f5e370ed83bd4eb9d365c3 1313 873d6a743fd7c0ad033e4d7e7eed3d1c;7136ed84741876b664376e32b8e8cdb6 SAMEA4561159 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947863/ERR1947863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947863/ERR1947863_2.fastq.gz 2316998 WGS 0cc0d030-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58878714;81375297 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947863/ERR1947863_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947863/ERR1947863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947863/21946_6#343.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947863/21946_6#343.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947863/ERR1947863_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947863/ERR1947863_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947863/21946_6#343.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947863/21946_6#343.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 101636844;3921 ERS1460338 ERX2013650 GENOMIC 18471601 349866698 2017-04-25 SC_RUN_21946_6#343 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947863/21946_6#343.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947863/21946_6#343.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947292 SC_EXP_21903_8#138 433 ed3881e83278f65be144165dc7e76040;7932c50ef24ebd43ab753ce99f980799 1313 9f7cb5422cc6762c29b4f5c71f1a5321;4a89f5ddceaa7f3b133801a63a3dac22 SAMEA4561319 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947292/ERR1947292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947292/ERR1947292_2.fastq.gz 2486792 WGS 1d0c1bc0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 60101389;88827876 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947292/ERR1947292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947292/ERR1947292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947292/21903_8#138.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947292/21903_8#138.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947292/ERR1947292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947292/ERR1947292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947292/21903_8#138.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947292/21903_8#138.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 108827203;4201 ERS1460498 ERX2013079 GENOMIC 18430351 375505592 2017-04-25 SC_RUN_21903_8#138 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947292/21903_8#138.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947292/21903_8#138.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947145 SC_EXP_21903_6#175 441 48500dfa8f1c1ab0850044cbcd05eaea;70d098295a6f8a78db06fa02c504887f 1313 714e11f902c6919d5e6fc91f5264a68c;db8631b575e24bd072bd75e8e8db69d3 SAMEA4560986 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947145/ERR1947145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947145/ERR1947145_2.fastq.gz 2211198 WGS 015fc200-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53335751;74742045 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947145/ERR1947145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947145/ERR1947145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947145/21903_6#175.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947145/21903_6#175.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947145/ERR1947145_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947145/ERR1947145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947145/21903_6#175.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947145/21903_6#175.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 93079659;3740 ERS1460165 ERX2012932 GENOMIC 18408090 333890898 2017-04-25 SC_RUN_21903_6#175 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947145/21903_6#175.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947145/21903_6#175.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1422341 SC_EXP_19084_7#12 458 4d3223632fb33ba4f7de6242220d06fb;2502f61a5c294864f845b36279f42efc 1313 5044349adc1c4f70c499b18a639cbfeb;388f1f6e617bd62a45a1f8ed671374bb SAMEA3714165 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422341/ERR1422341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422341/ERR1422341_2.fastq.gz 2314216 WGS 44148cd0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 50456062;50547596 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422341/ERR1422341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/001/ERR1422341/ERR1422341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422341/19084_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422341/19084_7#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/001/ERR1422341/ERR1422341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/001/ERR1422341/ERR1422341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422341/19084_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422341/19084_7#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72325170;3903 ERS1021314 ERX1492923 GENOMIC 15738009 289277000 2016-05-24 SC_RUN_19084_7#12 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422341/19084_7#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422341/19084_7#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#12 ERR774619 SC_EXP_14936_5#55 211 4557cef40353e66a0235d858d3447fc4;3abc30b0dae965957ba326c5f23f935e 1313 e88f6b0d81f787257c6e9a5748df9132;723b6b87f2efb04627feb13a9e23f4bc SAMEA2783699 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774619/ERR774619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774619/ERR774619_2.fastq.gz 4846434 WGS GPS_MW_2227_R1-sc-2022194 RANDOM 175265693;177255767 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774619/ERR774619_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774619/ERR774619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774619/14936_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774619/14936_5#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774619/ERR774619_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774619/ERR774619_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774619/14936_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774619/14936_5#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293774208;7878 ERS553444 ERX717498 GENOMIC 12403542 484643400 2015-03-03 SC_RUN_14936_5#55 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774619/14936_5#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774619/14936_5#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#55 ERR742343 SC_EXP_14673_1#10 214 3a1d70dbe273d2144921eaaf9e172087;2d7b8307d36bd7803816d1f2b878bf57 1313 e842bed2c2e760e8bf19a3c4750c4de1;082205217958c9f8ab015ac9c0ff2723 SAMEA2796418 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742343/ERR742343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742343/ERR742343_2.fastq.gz 4646436 WGS GPS_US_2009206314-sc-2138397 RANDOM 150205604;156454138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742343/ERR742343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742343/ERR742343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742343/14673_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742343/14673_1#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742343/ERR742343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742343/ERR742343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742343/14673_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742343/14673_1#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249009825;7379 ERS558029 ERX686026 GENOMIC 12061691 464643600 2015-01-27 SC_RUN_14673_1#10 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742343/14673_1#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742343/14673_1#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#10 ERR1065392 SC_EXP_17138_3#2 472 7f259508ff23a3c5a5d8fd264cfb1885;1a9bb7110b8e300080060991dd1a89cb 1313 f84a58fe3d16328ec1683a2add65eaab;fde1b38067c3831df1738f6a8871e5be SAMEA3354261 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065392/ERR1065392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065392/ERR1065392_2.fastq.gz 5336648 WGS GPS_ZA_carriage_SP1908-sc-2278869 RANDOM 109119356;107218538 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065392/ERR1065392_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065392/ERR1065392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065392/17138_3#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065392/17138_3#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065392/ERR1065392_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065392/ERR1065392_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065392/17138_3#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065392/17138_3#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 163607627;8765 ERS708616 ERX1145542 GENOMIC 14438265 667081000 2015-10-13 SC_RUN_17138_3#2 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065392/17138_3#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065392/17138_3#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#2 ERR742414 SC_EXP_14673_1#89 214 3672d291a0ce2c23507c4b6b7c4c6580;3f08ca85e9e34ccd97d996218aaa8645 1313 10326e29a443575e5acdf54a9b50d435;fd82b14fd2ee317dff3372f95c8efd26 SAMEA2796497 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742414/ERR742414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742414/ERR742414_2.fastq.gz 6853222 WGS GPS_US_2009202419-sc-2138476 RANDOM 217321823;224427683 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742414/ERR742414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742414/ERR742414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742414/14673_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742414/14673_1#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742414/ERR742414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742414/ERR742414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742414/14673_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742414/14673_1#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 360584305;11114 ERS558108 ERX686097 GENOMIC 12061689 685322200 2015-01-27 SC_RUN_14673_1#89 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742414/14673_1#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742414/14673_1#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#89 ERR730186 SC_EXP_14520_4#46 222 b6984348ade15e18d65ef2559d57d084;2b2d649796a5740fa8be0680376bce5d 1313 abeb2b3ca88800da2ee048af0a6f939c;05a6ee56b6dc825f6683250036610963 SAMEA2696328 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730186/ERR730186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730186/ERR730186_2.fastq.gz 5897940 WGS GPS_GM_0564-sc-2021783 RANDOM 220147536;222928714 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730186/ERR730186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730186/ERR730186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730186/14520_4#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730186/14520_4#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730186/ERR730186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730186/ERR730186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730186/14520_4#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730186/14520_4#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 367483480;9640 ERS524907 ERX674132 GENOMIC 11982808 589794000 2015-01-14 SC_RUN_14520_4#46 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730186/14520_4#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730186/14520_4#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#46 ERR646594 SC_EXP_13470_1#65 235 21a3a440edc6d49fec8aba79c5018f3b;d820ada2384321ad35c922dcd00d91db 1313 fdde3005c595715c49c4b4080ecee368;9a2002fa7254974856e1f9dbafc07d56 SAMEA2554368 2014-10-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646594/ERR646594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646594/ERR646594_2.fastq.gz 5958066 WGS GPS_ZA_1257-sc-1951407 RANDOM 198885735;201604839 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646594/ERR646594_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646594/ERR646594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646594/13470_1#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646594/13470_1#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646594/ERR646594_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646594/ERR646594_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646594/13470_1#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646594/13470_1#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 335894045;9902 ERS464869 ERX603030 GENOMIC 10615510 595806600 2014-10-01 SC_RUN_13470_1#65 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646594/13470_1#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646594/13470_1#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA363825 13470_1#65 ERR632974 SC_EXP_13415_7#45 225 2283c1091c2e113b886b65f2b3bfe54f;f9e883a358f52ea38c4e215ed7a1bce2 1313 b452dab4e97f5bff04856e1eea8d7fea;b34d4e1141f92bc12af0c85c3f4e80f5 SAMEA2554156 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632974/ERR632974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632974/ERR632974_2.fastq.gz 4862648 WGS GPS_ZA_1045-sc-1951193 RANDOM 163915938;170440561 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632974/ERR632974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632974/ERR632974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632974/13415_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632974/13415_7#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632974/ERR632974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632974/ERR632974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632974/13415_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632974/13415_7#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276517711;8000 ERS464657 ERX589528 GENOMIC 10646340 486264800 2014-09-23 SC_RUN_13415_7#45 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632974/13415_7#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632974/13415_7#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#45 ERR563826 SC_EXP_12754_2#72 209 52a7c8a70ab9a1e2438b57f687021442;9ac974fcb941fbac9d7b5c3503d56c8d 1313 4ecf9cd8a4f5319fa425c6c097aa0ae3;777f84f5b40cccc9799f837a839cf84f SAMEA2383092 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563826/ERR563826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563826/ERR563826_2.fastq.gz 4552280 WGS 2100047_II-sc-1870342 RANDOM 154580550;157114357 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563826/ERR563826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563826/ERR563826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563826/12754_2#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563826/12754_2#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563826/ERR563826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563826/ERR563826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563826/12754_2#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563826/12754_2#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 256951116;7445 ERS409417 ERX522851 GENOMIC 9918659 455228000 2014-07-16 SC_RUN_12754_2#72 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563826/12754_2#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563826/12754_2#72.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#72 ERR600214 SC_EXP_13414_2#81 233 055c37cc7d815cebc3df8b0497729d91;2f60b3d3845e7d3437020c71ebfebec6 1313 7b3471b812f0d6e74ac6fb05d7778875;26c67652eafebb53411a37e23916d5e4 SAMEA2521632 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600214/ERR600214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600214/ERR600214_2.fastq.gz 5321842 WGS 2012211517-sc-1946924 RANDOM 174581709;179003845 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600214/ERR600214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600214/ERR600214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600214/13414_2#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600214/13414_2#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600214/ERR600214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600214/ERR600214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600214/13414_2#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600214/13414_2#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291215438;8808 ERS455172 ERX557043 GENOMIC 10600504 532184200 2014-09-16 SC_RUN_13414_2#81 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600214/13414_2#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600214/13414_2#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#81 ERR563759 SC_EXP_12754_2#5 209 a81950a7ee44d1102ce9502e326d6e46;919bfd741a09d403c3cd1f7a860a213f 1313 99d383a0965f9c9b0de2f237a85088ab;80e39d0abd6627ddd09c908e998cb140 SAMEA2383025 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563759/ERR563759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563759/ERR563759_2.fastq.gz 5203216 WGS 2090297_II-sc-1870275 RANDOM 176817357;180880508 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563759/ERR563759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563759/ERR563759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563759/12754_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563759/12754_2#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563759/ERR563759_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563759/ERR563759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563759/12754_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563759/12754_2#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 297116723;8509 ERS409350 ERX522784 GENOMIC 9918615 520321600 2014-07-16 SC_RUN_12754_2#5 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563759/12754_2#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563759/12754_2#5.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#5 ERR554880 SC_EXP_12673_6#49 221 f6b612d0236df2a1041799b611eb4891;036a9b8ce3c8cef43f5d5911be55046d 1313 c254e0e640f01b1afbe2fd45d238e2a9;49a58a2dcd299e1609525b174d2d3370 SAMEA2382594 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554880/ERR554880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554880/ERR554880_2.fastq.gz 4427842 WGS 2120521-sc-1869839 RANDOM 145402507;163380322 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554880/ERR554880_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554880/ERR554880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554880/12673_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554880/12673_6#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554880/ERR554880_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554880/ERR554880_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554880/12673_6#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554880/12673_6#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 255723553;7279 ERS408919 ERX513949 GENOMIC 9798903 442784200 2014-07-02 SC_RUN_12673_6#49 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554880/12673_6#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554880/12673_6#49.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 ERR461892 SC_EXP_11893_1#68 234 9789212c48cd3a6bfcbba882e858f670;05e52b15c5bc246b75750d7101c94e5e 1313 076a0230a086f351ee06d77af5656d53;2c81c6f2177926e8ba8716ee883b1edf SAMEA2238827 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461892/ERR461892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461892/ERR461892_2.fastq.gz 4337536 WGS 2103495-sc-2013-11-05T12:03:05Z-1750190 RANDOM 146246527;151444209 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461892/ERR461892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461892/ERR461892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461892/11893_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461892/11893_1#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461892/ERR461892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461892/ERR461892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461892/11893_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461892/11893_1#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 245272397;7203 ERS367639 ERX428233 GENOMIC 9028168 433753600 2014-03-18 SC_RUN_11893_1#68 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461892/11893_1#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461892/11893_1#68.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#68 ERR496941 SC_EXP_12216_4#92 250 44b8a1bf86db286cd61efe81ff5c5caa;33de43516493a354ba769eaa675c48ed 1313 a21eb803c62a967d5b24b6e6eb94bbca;2b512cdf90fdce561f0d2c0edf1a2dc6 SAMEA2238852 2014-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496941/ERR496941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496941/ERR496941_2.fastq.gz 4865342 WGS 2104348-sc-2013-11-05T12:03:29Z-1750216 RANDOM 162526850;166121622 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496941/ERR496941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496941/ERR496941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496941/12216_4#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496941/12216_4#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR496/ERR496941/ERR496941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR496/ERR496941/ERR496941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496941/12216_4#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496941/12216_4#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 269944074;7874 ERS367664 ERX462357 GENOMIC 9399871 486534200 2014-05-06 SC_RUN_12216_4#92 fasp.sra.ebi.ac.uk:/vol1/run/ERR496/ERR496941/12216_4#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR496/ERR496941/12216_4#92.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA307756 12216_4#92 ERR461366 SC_EXP_11860_8#84 222 07b1a906c3d817ce861f1d73c31e3a9e;89f9b84b698cfa64036de86577476f0e 1313 f09a7c9e834d82fe98563a11b6afac07;80492648f9009edf8d9d166adccd9738 SAMEA2239216 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461366/ERR461366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461366/ERR461366_2.fastq.gz 4038224 WGS 2010159-sc-2013-11-05T12:09:56Z-1750587 RANDOM 126851817;133894661 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461366/ERR461366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461366/ERR461366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461366/11860_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461366/11860_8#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461366/ERR461366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461366/ERR461366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461366/11860_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461366/11860_8#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 213788574;6656 ERS368028 ERX427707 GENOMIC 9015311 403822400 2014-03-18 SC_RUN_11860_8#84 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461366/11860_8#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461366/11860_8#84.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461329 SC_EXP_11860_8#47 222 dc27cdcbf15adfc94afeba65f3426033;fb43dde6a5f3edc74956d6803229ba3a 1313 e4dbfd855ee7a613b48b44c6930d9823;ea594e69b1999555d3cc6318a6930ad9 SAMEA2239179 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461329/ERR461329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461329/ERR461329_2.fastq.gz 4178050 WGS 2001580-sc-2013-11-05T12:09:17Z-1750550 RANDOM 131215262;137043341 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461329/ERR461329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461329/ERR461329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461329/11860_8#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461329/11860_8#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461329/ERR461329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461329/ERR461329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461329/11860_8#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461329/11860_8#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 219510828;6958 ERS367991 ERX427670 GENOMIC 9015342 417805000 2014-03-18 SC_RUN_11860_8#47 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461329/11860_8#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461329/11860_8#47.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#47 ERR461566 SC_EXP_11861_3#13 226 1d575922e042c698b0eb9b698c0a457b;7296f5e8cf32358190823d0ddfa13ebf 1313 5de3e1fe28d2df3a07eae1e192e50561;c997df724b202e972d37a3dce34de030 SAMEA2238867 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461566/ERR461566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461566/ERR461566_2.fastq.gz 3700012 WGS 2110253-sc-2013-11-05T12:04:03Z-1750231 RANDOM 123119799;128512595 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461566/ERR461566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461566/ERR461566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461566/11861_3#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461566/11861_3#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461566/ERR461566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461566/ERR461566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461566/11861_3#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461566/11861_3#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 206884038;6129 ERS367679 ERX427907 GENOMIC 9016255 370001200 2014-03-18 SC_RUN_11861_3#13 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461566/11861_3#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461566/11861_3#13.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461434 SC_EXP_11861_1#59 225 72f8c011cdea1aca8ae25c40bfe29024;0324ef2d996186eac24298f5147303d6 1313 f195f64919eedd5ad7d6a2c3a52d67fc;d4cc7002976018187216e61dd8dd7eea SAMEA2238621 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461434/ERR461434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461434/ERR461434_2.fastq.gz 3766740 WGS 2090297-sc-2013-11-05T11:59:37Z-1749982 RANDOM 121358141;126532724 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461434/ERR461434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461434/ERR461434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461434/11861_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461434/11861_1#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461434/ERR461434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461434/ERR461434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461434/11861_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461434/11861_1#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 202556723;6192 ERS367433 ERX427775 GENOMIC 9016139 376674000 2014-03-18 SC_RUN_11861_1#59 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461434/11861_1#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461434/11861_1#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#59 ERR461856 SC_EXP_11893_1#30 234 f9584508f281d919dc8babfa84bf50f3;f0377c19523c5023090f1fb8c2474e2c 1313 49cef7553da7c362dff5d9446f897fae;12e8bb673a85f4811e91c3425cbc6514 SAMEA2238787 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461856/ERR461856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461856/ERR461856_2.fastq.gz 4895802 WGS 2102535-sc-2013-11-05T12:02:26Z-1750150 RANDOM 164313642;169810515 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461856/ERR461856_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461856/ERR461856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461856/11893_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461856/11893_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461856/ERR461856_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461856/ERR461856_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461856/11893_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461856/11893_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 276480920;8088 ERS367599 ERX428197 GENOMIC 9028187 489580200 2014-03-18 SC_RUN_11893_1#30 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461856/11893_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461856/11893_1#30.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#30 ERR460931 SC_EXP_11860_4#15 217 877de31ec61387d5a5728f1019c5c473;9101ca8f56da3199bc3b5048ba993528 1313 f1426d20f84fe18ecfd6fa042b8f981f;f55d6aaeeb51bce2403c6c9b20343acc SAMEA2238290 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460931/ERR460931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460931/ERR460931_2.fastq.gz 4954586 WGS 2060837-sc-2013-11-05T11:54:04Z-1749648 RANDOM 158488610;167631272 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460931/ERR460931_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460931/ERR460931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460931/11860_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460931/11860_4#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460931/ERR460931_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460931/ERR460931_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460931/11860_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460931/11860_4#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 268191405;8168 ERS367102 ERX427272 GENOMIC 9012509 495458600 2014-03-18 SC_RUN_11860_4#15 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460931/11860_4#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460931/11860_4#15.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#15 ERR461049 SC_EXP_11860_5#46 210 0fa3666ebcfc801c5bf45176d8d3a14e;78ccace3834077359f140f49269f7284 1313 0b11ca7e4d6601218b70e2f15d7f2b4d;7f20a182ca81e4218d3f803bf0d9dcd9 SAMEA2238415 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461049/ERR461049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461049/ERR461049_2.fastq.gz 2027202 WGS 2070983-sc-2013-11-05T11:56:03Z-1749774 RANDOM 54557564;57672579 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461049/ERR461049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461049/ERR461049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461049/11860_5#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461049/11860_5#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461049/ERR461049_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461049/ERR461049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461049/11860_5#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461049/11860_5#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 88691891;3401 ERS367227 ERX427390 GENOMIC 9014548 202720200 2014-03-18 SC_RUN_11860_5#46 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461049/11860_5#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461049/11860_5#46.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR425397 SC_EXP_11511_7#45 224 660099faa8fc10ba2562f6608220a34a;bbc26c500e4cadf75f91c7b574ba1b45 1313 4ef9fded47c075fb48ef51e3c860b9f8;c6dd56b47d8f28d4fb17750d1813a5ae SAMEA1964832 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425397/ERR425397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425397/ERR425397_2.fastq.gz 4384886 WGS 3100_00-sc-2013-07-03T13:29:42Z-1659218 RANDOM 142358115;146433790 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425397/ERR425397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425397/ERR425397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425397/11511_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425397/11511_7#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425397/ERR425397_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425397/ERR425397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425397/11511_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425397/11511_7#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 237726410;7238 ERS322394 ERX391672 GENOMIC 8520718 438488600 2014-02-10 SC_RUN_11511_7#45 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425397/11511_7#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425397/11511_7#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#45 ERR069686 SC_EXP_6999_1#4 243 cca857305619f86b7faa4b44472c3dc4 1313 4298b2044b47f74a4f6024efb56a58d4;e4f3ebef9f7f434a3e5bbf3f990e5930 SAMEA1032457 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069686/ERR069686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069686/ERR069686_2.fastq.gz 5444672 WGS 3187-sc-2011-08-01T09:44:27Z-1250057 RANDOM 315461615;310824227 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069686/ERR069686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069686/ERR069686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069686/6999_1#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069686/ERR069686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069686/ERR069686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069686/6999_1#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 795717379 ERS043992 ERX047539 GENOMIC 3736905 816700800 2012-01-19 SC_RUN_6999_1#4 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069686/6999_1#4.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR124307 SC_EXP_7553_5#91 207 e825a4624a20c1dff9a42c9c33bd5477 1313 be6b9bfad6d23b084f0d705bfacd34bf;13b9bea89a6ff439e204da4bd82737da SAMEA1463075 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124307/ERR124307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124307/ERR124307_2.fastq.gz 6168421 WGS PT8085-sc-2011-11-08T10:09:50Z-1298566 RANDOM 648074627;676613624 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124307/ERR124307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124307/ERR124307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124307/7553_5#91.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124307/ERR124307_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124307/ERR124307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124307/7553_5#91.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1288871437 ERS070198 ERX100489 GENOMIC 4383210 1233684200 2012-05-09 SC_RUN_7553_5#91 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124307/7553_5#91.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR045375 SC_EXP_6486_6#4 232 654845bcd9b9c6a070ec5f0fdaeea9e2 1313 d40fca623d2369c158ce7481dfdd047f;1ce317c60bf3b8758966879eafdcb01b SAMEA1026338 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045375/ERR045375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045375/ERR045375_2.fastq.gz 9029804 WGS UoS4356-sc-2011-02-14-1078464 RANDOM 483978965;483356605 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045375/ERR045375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045375/ERR045375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045375/6486_6#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045375/ERR045375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045375/ERR045375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045375/6486_6#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1205994697 ERS023410 ERX022437 GENOMIC 2744979 1354470600 2011-09-14 SC_RUN_6486_6#4 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045375/6486_6#4.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_6#4 ERR2305341 SC_EXP_22695_3#300 420 bbbf5337309ff2029ef3168cfc274d39;68149d12cf46ff2d4095cd32383f6aa7 1313 6499aae8f248df8e9f82d7c2f0b2075d;c1bcb27f7ad0d50d96cfd6308658cc72 SAMEA104035074 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305341/ERR2305341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305341/ERR2305341_2.fastq.gz 2938592 WGS 093140b0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 78724742;104930054 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305341/ERR2305341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305341/ERR2305341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305341/22695_3#300.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305341/22695_3#300.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305341/ERR2305341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305341/ERR2305341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305341/22695_3#300.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305341/22695_3#300.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 134636132;4928 ERS1698967 ERX2356651 GENOMIC DN477147S:G2 443727392 2018-02-16 SC_RUN_22695_3#300 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305341/22695_3#300.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305341/22695_3#300.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809049 ERR1947532 SC_EXP_21946_6#12 459 5c38e0349f84abe695dba7aac42ecdec;ba8d2224671d88a5b16c9d6e3189d328 1313 9aaf6add09cc16a7783f92277fde3982;1cae0c318a6e0d3fb092db0998bf9f1f SAMEA4561561 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947532/ERR1947532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947532/ERR1947532_2.fastq.gz 2194882 WGS 35fb7860-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58681372;81381886 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947532/ERR1947532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947532/ERR1947532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947532/21946_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947532/21946_6#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947532/ERR1947532_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947532/ERR1947532_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947532/21946_6#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947532/21946_6#12.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102175365;3665 ERS1460740 ERX2013319 GENOMIC 18471655 331427182 2017-04-25 SC_RUN_21946_6#12 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947532/21946_6#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947532/21946_6#12.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947674 SC_EXP_21946_6#154 436 1b996b5d02148ace68bfe29de058a49c;bee86d24fb01b1e293d2fa2f54152ac6 1313 6b394e181842e3790958c9f810f6e5ee;ba4e2d08499fa93bb896a231f54ef0ff SAMEA17713918 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947674/ERR1947674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947674/ERR1947674_2.fastq.gz 2272068 WGS 40610f90-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57972070;82469857 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947674/ERR1947674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947674/ERR1947674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947674/21946_6#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947674/21946_6#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947674/ERR1947674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947674/ERR1947674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947674/21946_6#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947674/21946_6#154.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 102098795;3837 ERS1461733 ERX2013461 GENOMIC 18471491 343082268 2017-04-25 SC_RUN_21946_6#154 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947674/21946_6#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947674/21946_6#154.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947488 SC_EXP_21903_8#334 417 cf90fb2281d7f15e04db0e028206720a;de1bab69c89cf4e475e45e3b5606ddfb 1313 769c8dbe70baf59e9009d8a31e17c7b3;35886fdcf13391cceefcaffc8e7dab53 SAMEA4561516 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947488/ERR1947488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947488/ERR1947488_2.fastq.gz 1988884 WGS 2f693050-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 49295179;70788821 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947488/ERR1947488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947488/ERR1947488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947488/21903_8#334.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947488/21903_8#334.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947488/ERR1947488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947488/ERR1947488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947488/21903_8#334.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947488/21903_8#334.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 87213514;3390 ERS1460695 ERX2013275 GENOMIC 18453186 300321484 2017-04-25 SC_RUN_21903_8#334 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947488/21903_8#334.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947488/21903_8#334.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947626 SC_EXP_21946_6#106 460 8a47e97612cb8c17ad6fd3465b3b5879;41aa723c7784b8e0dc94e98419037c8e 1313 852ec3699706719f88073f162cbbde4c;5f72df470d76f4bb475e75757b702cdc SAMEA17677168 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947626/ERR1947626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947626/ERR1947626_2.fastq.gz 2411680 WGS 3e684cd0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 62916629;89872261 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947626/ERR1947626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947626/ERR1947626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947626/21946_6#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947626/21946_6#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947626/ERR1947626_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947626/ERR1947626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947626/21946_6#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947626/21946_6#106.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 112328610;4070 ERS1461684 ERX2013413 GENOMIC 18471485 364163680 2017-04-25 SC_RUN_21946_6#106 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947626/21946_6#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947626/21946_6#106.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1422345 SC_EXP_19084_7#16 458 c04f67763743ab05870e42af5d33c0a1;2b37b52e10809cc68c1cdb0c89c80cfe 1313 1d95cc5e3bf3ffab6a773b877043e990;25ada6f4684644ed30249e20121998c1 SAMEA3714169 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422345/ERR1422345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422345/ERR1422345_2.fastq.gz 2100628 WGS 44392bd0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 46519638;46282308 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422345/ERR1422345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422345/ERR1422345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422345/19084_7#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422345/19084_7#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422345/ERR1422345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422345/ERR1422345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422345/19084_7#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422345/19084_7#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66546700;3552 ERS1021318 ERX1492927 GENOMIC 15738057 262578500 2016-05-24 SC_RUN_19084_7#16 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422345/19084_7#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422345/19084_7#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#16 ERR1214590 SC_EXP_18090_2#82 454 9ae7a60c4867a668bb0b27695a91ef24;b30ed02ed03e84cd8c2541c097e1fae0 1313 e893af048781bd31fd08bedc4b8b0f4a;702d25143e483b65b07a2856f632a7b7 SAMEA3431514 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214590/ERR1214590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214590/ERR1214590_2.fastq.gz 3053356 WGS GPS_HK_84-sc-2296688 RANDOM 62441376;65038566 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214590/ERR1214590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214590/ERR1214590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214590/18090_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214590/18090_2#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214590/ERR1214590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214590/ERR1214590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214590/18090_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214590/18090_2#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90508748;5067 ERS740799 ERX1286803 GENOMIC 15079949 381669500 2016-01-19 SC_RUN_18090_2#82 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214590/18090_2#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214590/18090_2#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#82 ERR1947426 SC_EXP_21903_8#272 407 ed624e302712c5947bfdb3fb466002a8;6840f834af86e926b5ae031a0f7e830d 1313 5c4024f9a2b98b5715195d61ebb26b2b;cc56b0ef6105359b4002021c4f0c3b99 SAMEA4561454 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947426/ERR1947426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947426/ERR1947426_2.fastq.gz 1995806 WGS 2cece5b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 49201389;71102198 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947426/ERR1947426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947426/ERR1947426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947426/21903_8#272.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947426/21903_8#272.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947426/ERR1947426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947426/ERR1947426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947426/21903_8#272.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947426/21903_8#272.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 87676810;3406 ERS1460633 ERX2013213 GENOMIC 18453069 301366706 2017-04-25 SC_RUN_21903_8#272 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947426/21903_8#272.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947426/21903_8#272.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1214589 SC_EXP_18090_2#81 454 ebc795fc6aadd7c4dc124b827aa549b5;83c5e5519d8eb26f333fdf93bedd1712 1313 d94aed255fe9c200a1064334bc6e6e5f;836864dd9e5e1c6a4711d797128cfd1a SAMEA3431511 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214589/ERR1214589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214589/ERR1214589_2.fastq.gz 2741418 WGS GPS_HK_83-sc-2296685 RANDOM 55908473;58524226 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214589/ERR1214589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214589/ERR1214589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214589/18090_2#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214589/18090_2#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214589/ERR1214589_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214589/ERR1214589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214589/18090_2#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214589/18090_2#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81246753;4578 ERS740796 ERX1286802 GENOMIC 15079937 342677250 2016-01-19 SC_RUN_18090_2#81 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214589/18090_2#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214589/18090_2#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#81 ERR1066305 SC_EXP_17175_8#21 467 7c8e9663562c9a7f1eced71a95b6347d;d7c1351220813af2003b9179fd974f91 1313 97dafb9203fe62a5278f3fe088a6990b;4c2ad0137ac6d1810a4e4d937cde66b9 SAMEA3353940 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066305/ERR1066305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066305/ERR1066305_2.fastq.gz 4560364 WGS GPS_ZA_2903-sc-2278546 RANDOM 83341263;86365860 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066305/ERR1066305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066305/ERR1066305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066305/17175_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066305/17175_8#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066305/ERR1066305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066305/ERR1066305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066305/17175_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066305/17175_8#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 130008072;7533 ERS708295 ERX1146455 GENOMIC 14455736 570045500 2015-10-13 SC_RUN_17175_8#21 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066305/17175_8#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066305/17175_8#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#21 ERR1065892 SC_EXP_17150_6#66 464 db2fcbb1cf8d81d2fb7ef259165f1f39;32810a691d0e7fb49929941bf02235c4 1313 ebfd5ef9d8515ed4538d0a9f6c934cb5;77cc5f5291810fb0840788a9b78a41fe SAMEA3354205 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065892/ERR1065892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065892/ERR1065892_2.fastq.gz 524358 WGS GPS_ZA_3027-sc-2278813 RANDOM 11682837;11411157 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065892/ERR1065892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065892/ERR1065892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065892/17150_6#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065892/17150_6#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065892/ERR1065892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065892/ERR1065892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065892/17150_6#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065892/17150_6#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 14883236;922 ERS708560 ERX1146042 GENOMIC 14438176 65544750 2015-10-13 SC_RUN_17150_6#66 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065892/17150_6#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065892/17150_6#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#66 ERR774076 SC_EXP_14913_4#74 230 4a8a6bb99fcdd5009c019cf19017986b;8ef82f4ea5db6c96c7fbf839c43ec78e 1313 af66731b74bd6d973ce60809fa91cb12;b184cad955854379eb2bf30c5e948a70 SAMEA2814183 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774076/ERR774076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774076/ERR774076_2.fastq.gz 4422116 WGS GPS_ZA_2401-sc-2022668 RANDOM 147521766;153967626 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774076/ERR774076_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774076/ERR774076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774076/14913_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774076/14913_4#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774076/ERR774076_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774076/ERR774076_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774076/14913_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774076/14913_4#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246980637;7073 ERS566551 ERX716955 GENOMIC 12396002 442211600 2015-03-03 SC_RUN_14913_4#74 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774076/14913_4#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774076/14913_4#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#74 ERR730789 SC_EXP_14566_5#29 233 f4062c3508d0fa33e2521eb5bbe52fd6;3330ed592a6d376660c59a80a001212b 1313 456b2b38c8d55858f774cdf6f223f344;48dd552d2aec21d8dc658896f7ec6854 SAMEA2658676 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730789/ERR730789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730789/ERR730789_2.fastq.gz 4219032 WGS GPS_ZA_1786-sc-2021284 RANDOM 122777754;124978941 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730789/ERR730789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730789/ERR730789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730789/14566_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730789/14566_5#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730789/ERR730789_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730789/ERR730789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730789/14566_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730789/14566_5#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 198908344;6808 ERS508704 ERX674735 GENOMIC 11838976 421903200 2015-01-14 SC_RUN_14566_5#29 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730789/14566_5#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730789/14566_5#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#29 ERR774176 SC_EXP_14913_5#82 225 d0aa6bc8071d387fbc22698cd2a599ca;ae35b574fb5d9d6c49975fb8102c7c84 1313 e8751c023c775932fab9ba440af4ee48;3fae77ea967e805a6257c1372e9dc17f SAMEA2814482 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774176/ERR774176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774176/ERR774176_2.fastq.gz 4631010 WGS GPS_ZA_2694-sc-2138277 RANDOM 155521147;164525324 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774176/ERR774176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774176/ERR774176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774176/14913_5#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774176/14913_5#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774176/ERR774176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774176/ERR774176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774176/14913_5#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774176/14913_5#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261771562;7424 ERS566850 ERX717055 GENOMIC 12403389 463101000 2015-03-03 SC_RUN_14913_5#82 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774176/14913_5#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774176/14913_5#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#82 ERR1066264 SC_EXP_17175_7#71 468 401695346ea329c8acf4849baa505c61;4fcefb18018abd0780b42266542ccda9 1313 32439742805f13bd7fa3263945dea33d;a451546f57e9b29fd86ca91967e72557 SAMEA3354043 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066264/ERR1066264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066264/ERR1066264_2.fastq.gz 5405032 WGS GPS_ZA_2863-sc-2278649 RANDOM 100036155;105688240 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066264/ERR1066264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066264/ERR1066264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066264/17175_7#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066264/17175_7#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066264/ERR1066264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066264/ERR1066264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066264/17175_7#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066264/17175_7#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 159127538;8848 ERS708398 ERX1146414 GENOMIC 14427499 675629000 2015-10-13 SC_RUN_17175_7#71 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066264/17175_7#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066264/17175_7#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#71 ERR716236 SC_EXP_14412_3#59 227 8a54b88205d163118203ee48a320ca8d;a383fd2c9764d0102e4e8879157494c9 1313 5eea21ed3b5149f87f45be4110f40c6b;56cb94fe5c6a821f62d435e855c93a25 SAMEA2674694 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716236/ERR716236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716236/ERR716236_2.fastq.gz 4695400 WGS 980161-sc-2020047 RANDOM 161542706;163833788 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716236/ERR716236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716236/ERR716236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716236/14412_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716236/14412_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716236/ERR716236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716236/ERR716236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716236/14412_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716236/14412_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 265826473;7715 ERS515209 ERX660158 GENOMIC 11617111 469540000 2015-01-08 SC_RUN_14412_3#59 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716236/14412_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716236/14412_3#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 14412_3#59 ERR662364 SC_EXP_13710_1#48 186 fc41c1baca34a4b80b9ece55a9ae939e;1d4582d9cf591c6882645e4d692f5a7e 1313 4d1eabdb80a0e4f459d8f98fc121cd21;b908760993c630abf12efc98b13e349f SAMEA2521466 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662364/ERR662364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662364/ERR662364_2.fastq.gz 5790836 WGS 2009218336-sc-1946763 RANDOM 183274035;191864477 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662364/ERR662364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662364/ERR662364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662364/13710_1#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662364/13710_1#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662364/ERR662364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662364/ERR662364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662364/13710_1#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662364/13710_1#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 309636048;9619 ERS455006 ERX618640 GENOMIC 11100431 579083600 2014-10-28 SC_RUN_13710_1#48 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662364/13710_1#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662364/13710_1#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#48 ERR662418 SC_EXP_13710_2#30 196 c5daf460aadcca4421c026e8e9417950;6275aedf4ee3c24c0957caa7ef3893fc 1313 dcdca7b00fa1d6623dbd3bf4c0519f7f;17fb99d85b8b3cb8100c9e48ae5879f3 SAMEA2521697 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662418/ERR662418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662418/ERR662418_2.fastq.gz 7288590 WGS 2012212204-sc-1946990 RANDOM 242961525;254805105 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662418/ERR662418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662418/ERR662418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662418/13710_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662418/13710_2#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662418/ERR662418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662418/ERR662418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662418/13710_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662418/13710_2#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 418881600;11861 ERS455237 ERX618694 GENOMIC 11100502 728859000 2014-10-28 SC_RUN_13710_2#30 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662418/13710_2#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662418/13710_2#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#30 ERR662339 SC_EXP_13710_1#23 186 f9eb140b643d609e434fd648a1d9b1e4;8c4a34aeaa9063b2d09cf2d0fa6a9559 1313 e44da21a2538eb877090797411d4bbf4;d8163408bce86dfe4706a4fab4719c28 SAMEA2521791 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662339/ERR662339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662339/ERR662339_2.fastq.gz 6135812 WGS 2013209129-sc-1947085 RANDOM 195418685;203446990 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662339/ERR662339_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662339/ERR662339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662339/13710_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662339/13710_1#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662339/ERR662339_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662339/ERR662339_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662339/13710_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662339/13710_1#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 334437515;10072 ERS455331 ERX618615 GENOMIC 11100416 613581200 2014-10-28 SC_RUN_13710_1#23 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662339/13710_1#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662339/13710_1#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#23 ERR600184 SC_EXP_13414_2#51 233 7a9ae2465d95baddd2d934a2644e864a;c166b0f5fa6e12462374c4415c6da072 1313 d1e32e2cc052a793ec858c4f0ddb54eb;56c7efcb48d51b1a6186e68b8b289465 SAMEA2521602 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600184/ERR600184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600184/ERR600184_2.fastq.gz 5126080 WGS 2012222457-sc-1946894 RANDOM 169686665;175234899 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600184/ERR600184_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600184/ERR600184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600184/13414_2#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600184/13414_2#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600184/ERR600184_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600184/ERR600184_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600184/13414_2#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600184/13414_2#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282751173;8470 ERS455142 ERX557013 GENOMIC 10600524 512608000 2014-09-16 SC_RUN_13414_2#51 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600184/13414_2#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600184/13414_2#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#51 ERR600183 SC_EXP_13414_2#50 233 af2f0251706ca9fda1d23886e02c54c0;c91fee0373a84abc648937c3ced60bb2 1313 4f3d86d6b52def901e064d5b29d36c30;3a934f593d8af6fbbe3e1d8f19b1e76b SAMEA2521601 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600183/ERR600183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600183/ERR600183_2.fastq.gz 5045154 WGS 2012222470-sc-1946893 RANDOM 167459706;173211579 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600183/ERR600183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600183/ERR600183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600183/13414_2#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600183/13414_2#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600183/ERR600183_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600183/ERR600183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600183/13414_2#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600183/13414_2#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280875558;8340 ERS455141 ERX557012 GENOMIC 10600512 504515400 2014-09-16 SC_RUN_13414_2#50 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600183/13414_2#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600183/13414_2#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#50 ERR600152 SC_EXP_13414_2#9 233 6229f40eee36f972a4e40f29e0636c77;6e1619aa97ec78f0ac6cea8179307bfb 1313 35b970260faf22112832f7a3028356c2;44971266a90bec98a0487d3b3506df36 SAMEA2521560 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600152/ERR600152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600152/ERR600152_2.fastq.gz 5970256 WGS 2012214417-sc-1946852 RANDOM 198910013;202489374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600152/ERR600152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600152/ERR600152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600152/13414_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600152/13414_2#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600152/ERR600152_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600152/ERR600152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600152/13414_2#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600152/13414_2#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 331756530;9769 ERS455100 ERX556981 GENOMIC 10600495 597025600 2014-09-16 SC_RUN_13414_2#9 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600152/13414_2#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600152/13414_2#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#9 ERR600127 SC_EXP_13414_1#74 292 c3a8110c76adc8a3273ef3c1b058b89b;cbfc4b166c488ecc6302fdaa6a0ee164 1313 10a79de5b070ce44b8d78c69bfb3624d;7f2a4abeb5ab1a3601f6025b0b2e3a25 SAMEA2521530 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600127/ERR600127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600127/ERR600127_2.fastq.gz 5313988 WGS 2013211438-sc-1946821 RANDOM 179065489;184809018 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600127/ERR600127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600127/ERR600127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600127/13414_1#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600127/13414_1#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600127/ERR600127_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600127/ERR600127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600127/13414_1#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600127/13414_1#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 303668492;8757 ERS455070 ERX556956 GENOMIC 10524130 531398800 2014-09-16 SC_RUN_13414_1#74 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600127/13414_1#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600127/13414_1#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#74 ERR600124 SC_EXP_13414_1#69 292 ab4bcea8c2f9a4bca6d86efd3ec3c748;f495e1c0c4151f70beefd03817dc9100 1313 9879f229eccffb268102f65e8db3be4f;c5879088f1caae26f909943a2ed70cf0 SAMEA2521525 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600124/ERR600124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600124/ERR600124_2.fastq.gz 5679996 WGS 2013209049-sc-1946816 RANDOM 193547134;198779795 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600124/ERR600124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600124/ERR600124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600124/13414_1#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600124/13414_1#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600124/ERR600124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600124/ERR600124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600124/13414_1#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600124/13414_1#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326312873;9297 ERS455065 ERX556953 GENOMIC 10524165 567999600 2014-09-16 SC_RUN_13414_1#69 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600124/13414_1#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600124/13414_1#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#69 ERR600334 SC_EXP_13415_4#24 250 547084d655386eb18395c31477a689ff;aba6883e7d8c3f22c1f08d83128d5c3a 1313 dc2975e1dad9b9b6aaab0fc28e109c68;f33a2c69b6497429d638efc6b52b1490 SAMEA2553800 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600334/ERR600334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600334/ERR600334_2.fastq.gz 4118522 WGS GPS_ZA_736-sc-1950881 RANDOM 131401892;136742566 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600334/ERR600334_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600334/ERR600334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600334/13415_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600334/13415_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600334/ERR600334_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600334/ERR600334_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600334/13415_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600334/13415_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 219414060;6798 ERS464301 ERX557163 GENOMIC 10631264 411852200 2014-09-16 SC_RUN_13415_4#24 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600334/13415_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600334/13415_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#24 ERR600116 SC_EXP_13414_1#58 292 e04c23fb7debb0b1b4d9a2afb8b6520e;9ecad5ec3477af911382cafca8983931 1313 bd92e8cfd28be274be27c56de804f8b2;9fe98f1c81691737f5a642b18ee78633 SAMEA2521514 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600116/ERR600116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600116/ERR600116_2.fastq.gz 5319434 WGS 2012224843-sc-1946805 RANDOM 180884548;185998561 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600116/ERR600116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600116/ERR600116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600116/13414_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600116/13414_1#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600116/ERR600116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600116/ERR600116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600116/13414_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600116/13414_1#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302837493;8715 ERS455054 ERX556945 GENOMIC 10524128 531943400 2014-09-16 SC_RUN_13414_1#58 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600116/13414_1#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600116/13414_1#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#58 ERR600112 SC_EXP_13414_1#45 292 255431ab40f4ee850e3e4fd8ee542e3c;0e06b12ec0069a0d5f548a14efc01700 1313 ed4af6f569e6e94b744f41e1d477b20c;d0de85fdade81b3ea806c8c205697c32 SAMEA2521498 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600112/ERR600112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600112/ERR600112_2.fastq.gz 5635722 WGS 2013202610-sc-1946792 RANDOM 190529564;196877252 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600112/ERR600112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600112/ERR600112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600112/13414_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600112/13414_1#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600112/ERR600112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600112/ERR600112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600112/13414_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600112/13414_1#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322226689;9293 ERS455038 ERX556941 GENOMIC 10524162 563572200 2014-09-16 SC_RUN_13414_1#45 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600112/13414_1#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600112/13414_1#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#45 ERR600107 SC_EXP_13414_1#37 292 7833c149942c58c827c8f3349e5e4ab7;4923259c7ecc141b542734e73923b39f 1313 c4d906fa159e62a3da34b7568e899123;fd4b1e9b2629ee0c92ea975152225ebc SAMEA2521487 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600107/ERR600107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600107/ERR600107_2.fastq.gz 6392814 WGS 2010200794-sc-1946784 RANDOM 211289286;218253209 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600107/ERR600107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600107/ERR600107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600107/13414_1#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600107/13414_1#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600107/ERR600107_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600107/ERR600107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600107/13414_1#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600107/13414_1#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 369363528;10290 ERS455027 ERX556936 GENOMIC 10524161 639281400 2014-09-16 SC_RUN_13414_1#37 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600107/13414_1#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600107/13414_1#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#37 ERR600231 SC_EXP_13414_3#8 223 73594374258ccfa0aa217d8b20975a31;bda3a324a0b61460abe38627d638845e 1313 fdea1f7714f39e3a59b358084e9051a6;06c0a4e02be979f7e1aaee2dbd93948c SAMEA2521654 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600231/ERR600231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600231/ERR600231_2.fastq.gz 10754914 WGS 2012218235-sc-1946947 RANDOM 347174521;360265495 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600231/ERR600231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600231/ERR600231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600231/13414_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600231/13414_3#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600231/ERR600231_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600231/ERR600231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600231/13414_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600231/13414_3#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 592921286;17419 ERS455194 ERX557060 GENOMIC 10600675 1075491400 2014-09-16 SC_RUN_13414_3#8 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600231/13414_3#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600231/13414_3#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#8 ERR600225 SC_EXP_13414_2#95 233 445275977fdafb089273d1152313a0a2;94d1edaf5202b0913fecb9a4f8e1b117 1313 f65166b3fdaa186788776bb1ae5746c5;b0ffdeced046b40938cc74a28d193041 SAMEA2521646 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600225/ERR600225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600225/ERR600225_2.fastq.gz 5000356 WGS 2012215791-sc-1946938 RANDOM 164778109;167865069 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600225/ERR600225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600225/ERR600225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600225/13414_2#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600225/13414_2#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600225/ERR600225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600225/ERR600225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600225/13414_2#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600225/13414_2#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274197332;8290 ERS455186 ERX557054 GENOMIC 10600577 500035600 2014-09-16 SC_RUN_13414_2#95 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600225/13414_2#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600225/13414_2#95.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#95 ERR600223 SC_EXP_13414_2#92 233 0ababad6c2e9edf9b51717303f22dbb1;be8c00aee4a3bc353e454a9126301ad5 1313 40ca903576ec2a37a5de19b4a8dc6278;832e62175c7b9f61723c48555e727550 SAMEA2521643 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600223/ERR600223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600223/ERR600223_2.fastq.gz 5691984 WGS 2012214921-sc-1946935 RANDOM 190115653;193694791 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600223/ERR600223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600223/ERR600223_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600223/13414_2#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600223/13414_2#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600223/ERR600223_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600223/ERR600223_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600223/13414_2#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600223/13414_2#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 316611351;9341 ERS455183 ERX557052 GENOMIC 10600541 569198400 2014-09-16 SC_RUN_13414_2#92 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600223/13414_2#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600223/13414_2#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#92 ERR568663 SC_EXP_12837_3#61 231 c0b8287b6e8b6230922ffb47cc5bbe61;98450499b8839f21df83f8d4acc92362 1313 3a6a290b968697f2d4361d330be84d0b;5611ca78763d9ab387f902fb59556b45 SAMEA2434649 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568663/ERR568663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568663/ERR568663_2.fastq.gz 4982424 WGS SA_GPS_SP544-sc-1895714 RANDOM 162183356;165227154 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568663/ERR568663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568663/ERR568663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568663/12837_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568663/12837_3#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568663/ERR568663_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568663/ERR568663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568663/12837_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568663/12837_3#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268981239;8128 ERS428826 ERX527652 GENOMIC 9986345 498242400 2014-07-23 SC_RUN_12837_3#61 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568663/12837_3#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568663/12837_3#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#61 ERR563941 SC_EXP_12754_3#92 235 3b4652ec9d451b8a4f00be8dcafc1057;c1ab4cd1ea72a63146b9c4a5a51e2e86 1313 cbf69af0aeded4a0b3ca00b3633aaab0;7122397018c53ce5427284a2e7dabedf SAMEA2383207 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563941/ERR563941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563941/ERR563941_2.fastq.gz 4705908 WGS 2111189_II-sc-1870458 RANDOM 162130182;166746603 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563941/ERR563941_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563941/ERR563941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563941/12754_3#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563941/12754_3#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563941/ERR563941_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563941/ERR563941_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563941/12754_3#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563941/12754_3#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271857532;7771 ERS409532 ERX522966 GENOMIC 9922057 470590800 2014-07-16 SC_RUN_12754_3#92 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563941/12754_3#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563941/12754_3#92.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#92 ERR563918 SC_EXP_12754_3#69 235 e9db99b37b10e584764763ca292c22fe;b508448b3ea8b0ff74b7fe54a39ad021 1313 45e2e0273a6125619cb8ba03a03735cc;631c2a183c52d96f82e25ef7833c49f8 SAMEA2383184 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563918/ERR563918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563918/ERR563918_2.fastq.gz 4711486 WGS 2110548_II-sc-1870435 RANDOM 162654808;166555725 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563918/ERR563918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563918/ERR563918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563918/12754_3#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563918/12754_3#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563918/ERR563918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563918/ERR563918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563918/12754_3#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563918/12754_3#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 272784702;7675 ERS409509 ERX522943 GENOMIC 9922066 471148600 2014-07-16 SC_RUN_12754_3#69 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563918/12754_3#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563918/12754_3#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#69 ERR563949 SC_EXP_12754_4#5 232 77dd8e5efb21b3739315877db29004b8;4453a858e25fca090b85e5c94b75361c 1313 54238925b83f067d1606cf9d93d76962;97e6f9b7b6a680370951ab75ebb6b706 SAMEA2383215 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563949/ERR563949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563949/ERR563949_2.fastq.gz 5963424 WGS 2111309_II-sc-1870467 RANDOM 205099268;209297460 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563949/ERR563949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563949/ERR563949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563949/12754_4#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563949/12754_4#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563949/ERR563949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563949/ERR563949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563949/12754_4#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563949/12754_4#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 345915745;9866 ERS409540 ERX522974 GENOMIC 9922252 596342400 2014-07-16 SC_RUN_12754_4#5 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563949/12754_4#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563949/12754_4#5.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#5 ERR559357 SC_EXP_12718_4#91 233 7a8d2d642b7385f132a5fdcc7a876eab;0d876a3cc4b22d2fe1df80bf66b736ca 1313 08544c4164a7045b596e00af2be79231;752e953a73ce2b917bd84555273010d5 SAMEA2382826 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559357/ERR559357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559357/ERR559357_2.fastq.gz 5461024 WGS 2061049_II-sc-1870073 RANDOM 175483044;179404113 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559357/ERR559357_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559357/ERR559357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559357/12718_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559357/12718_4#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559357/ERR559357_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559357/ERR559357_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559357/12718_4#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559357/12718_4#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 291522594;8902 ERS409151 ERX518393 GENOMIC 9918303 546102400 2014-07-10 SC_RUN_12718_4#91 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559357/12718_4#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559357/12718_4#91.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#91 ERR461036 SC_EXP_11860_5#32 210 3dc10941a3acf8b47ac33bccb46c3f60;74cf0a2c06996aaa77baf1a57cb50851 1313 517809f74c74afca58bbcf7bdfffa6b1;6ba8abb4ea225167f31fc3911b698809 SAMEA2238401 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461036/ERR461036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461036/ERR461036_2.fastq.gz 2186822 WGS 2070782-sc-2013-11-05T11:55:49Z-1749760 RANDOM 60313234;63458183 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461036/ERR461036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461036/ERR461036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461036/11860_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461036/11860_5#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461036/ERR461036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461036/ERR461036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461036/11860_5#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461036/11860_5#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 97410411;3577 ERS367213 ERX427377 GENOMIC 9014570 218682200 2014-03-18 SC_RUN_11860_5#32 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461036/11860_5#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461036/11860_5#32.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#32 ERR461584 SC_EXP_11861_3#32 226 387b2fa6baa8c4de7addd389144ad89c;1c3bcf5c2aa4f7ac1d61f5ffe8e84519 1313 145319d07d0b84cd8d25e62fb9145fee;149ed7dd26d2eb8ec0c424fbe2356019 SAMEA2238885 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461584/ERR461584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461584/ERR461584_2.fastq.gz 4921056 WGS 2110548-sc-2013-11-05T12:04:21Z-1750249 RANDOM 164027051;169172631 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461584/ERR461584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461584/ERR461584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461584/11861_3#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461584/11861_3#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461584/ERR461584_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461584/ERR461584_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461584/11861_3#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461584/11861_3#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 272829885;7964 ERS367697 ERX427925 GENOMIC 9016293 492105600 2014-03-18 SC_RUN_11861_3#32 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461584/11861_3#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461584/11861_3#32.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#32 ERR461097 SC_EXP_11860_5#94 210 31a03293f3c894f43fd19fb277ea5842;ec70250790c31ce7ddb74dba72dac054 1313 b0967a7a23767a2801b97083c9a34b6c;556dd7f71b0bea62373ec708b85e3038 SAMEA2238464 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461097/ERR461097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461097/ERR461097_2.fastq.gz 2168948 WGS 2071947-sc-2013-11-05T11:56:54Z-1749823 RANDOM 58200566;61564048 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461097/ERR461097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461097/ERR461097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461097/11860_5#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461097/11860_5#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461097/ERR461097_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461097/ERR461097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461097/11860_5#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461097/11860_5#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 94683794;3652 ERS367276 ERX427438 GENOMIC 9014554 216894800 2014-03-18 SC_RUN_11860_5#94 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461097/11860_5#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461097/11860_5#94.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461570 SC_EXP_11861_3#17 226 74d639e72fb627d4af09c294a0d9456f;694b7cfe9d992cb7c2665167f2f00700 1313 00163de298a44d13ae518b464c4be999;5fbb4f8f8af27599da4c3fcf08de550a SAMEA2238871 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461570/ERR461570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461570/ERR461570_2.fastq.gz 3520794 WGS 2110371-sc-2013-11-05T12:04:07Z-1750235 RANDOM 115253790;120361967 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461570/ERR461570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461570/ERR461570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461570/11861_3#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461570/11861_3#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461570/ERR461570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461570/ERR461570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461570/11861_3#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461570/11861_3#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 193060141;5837 ERS367683 ERX427911 GENOMIC 9016208 352079400 2014-03-18 SC_RUN_11861_3#17 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461570/11861_3#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461570/11861_3#17.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#17 ERR438957 SC_EXP_11791_1#12 250 b3aac4fff33b2ca35e73a98e568e9387;1c2df162460788d0064eb4711a2a6c85 1313 20b4c1f3d60cb182267ce9c462b54b90;bedd6ad68c53efb69f0b83c95bf2142a SAMEA2151732 2014-02-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438957/ERR438957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438957/ERR438957_2.fastq.gz 6000782 WGS 3067_00-sc-2013-07-03T13:40:34Z-1659540 RANDOM 205657479;218543571 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438957/ERR438957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438957/ERR438957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438957/11791_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438957/11791_1#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR438/ERR438957/ERR438957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR438/ERR438957/ERR438957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438957/11791_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438957/11791_1#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 353749965;9812 ERS322705 ERX405620 GENOMIC 8859103 600078200 2014-02-24 SC_RUN_11791_1#12 fasp.sra.ebi.ac.uk:/vol1/run/ERR438/ERR438957/11791_1#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR438/ERR438957/11791_1#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA287820 11791_1#12 ERR433696 SC_EXP_11657_8#2 250 32e2866f64d49acad8db58004ef29ba6;b3ad85d2c1f28f3c071d3e4c72068b1f 1313 140a68c8534549e501f9b51d956e6ef0;88f19c0711a527367063fff312e5fcac SAMEA2203757 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433696/ERR433696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433696/ERR433696_2.fastq.gz 6627734 WGS 5779_99-sc-2013-10-09T11:48:51Z-1712346 RANDOM 229521100;236965506 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433696/ERR433696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433696/ERR433696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433696/11657_8#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433696/11657_8#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433696/ERR433696_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433696/ERR433696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433696/11657_8#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433696/11657_8#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 387795007;10909 ERS356261 ERX399971 GENOMIC 8657096 662773400 2014-02-18 SC_RUN_11657_8#2 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433696/11657_8#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433696/11657_8#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_8#2 ERR129098 SC_EXP_7622_3#74 221 179c9328b04c8f2c918faafdf7dfb49f 1313 96c544b89262f1a2efcefca283b18204;65db110b92d24e4e64f70c0f2e4f239e SAMEA1463120 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129098/ERR129098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129098/ERR129098_2.fastq.gz 2896852 WGS CH2116-sc-2011-11-08T10:07:17Z-1298357 RANDOM 311686729;313764869 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129098/ERR129098_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129098/ERR129098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129098/7622_3#74.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129098/ERR129098_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129098/ERR129098_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129098/7622_3#74.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 604980700 ERS069989 ERX105239 GENOMIC 4336507 579370400 2012-05-28 SC_RUN_7622_3#74 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129098/7622_3#74.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124287 SC_EXP_7553_5#71 207 2703c1d8c5226c7bf76b4f798a00e200 1313 dd69ade911600fe9aecdc8f62a2ebe25;c49c62f0b4065f81ed53afb59c7b4f74 SAMEA1463241 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124287/ERR124287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124287/ERR124287_2.fastq.gz 5651320 WGS PT8021-sc-2011-11-08T10:09:36Z-1298546 RANDOM 594676995;620976205 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124287/ERR124287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124287/ERR124287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124287/7553_5#71.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124287/ERR124287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124287/ERR124287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124287/7553_5#71.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1187848511 ERS070178 ERX100469 GENOMIC 4383190 1130264000 2012-05-09 SC_RUN_7553_5#71 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124287/7553_5#71.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR129055 SC_EXP_7622_2#31 219 962060190f5db9ad83577483a7b162e5 1313 e3698101164f27fc31c560d89aa2bf63;9e1f8c967239c257b873df66de55ec28 SAMEA1463096 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129055/ERR129055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129055/ERR129055_2.fastq.gz 2911751 WGS BR1090-sc-2011-11-08T10:06:44Z-1298314 RANDOM 311842139;320978343 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129055/ERR129055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129055/ERR129055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129055/7622_2#31.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129055/ERR129055_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129055/ERR129055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129055/7622_2#31.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 610645011 ERS069946 ERX105196 GENOMIC 4336464 582350200 2012-05-28 SC_RUN_7622_2#31 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129055/7622_2#31.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR047952 SC_EXP_6630_1#11 215 7b70fed967793d4fc567602e4d441fdd 1313 8ce044f123e92d7bb0760783808aa17b;196c8bd55b5706aafdc3751c2a1b6e6a SAMEA1023954 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047952/ERR047952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047952/ERR047952_2.fastq.gz 3029149 WGS SMRU275-sc-2011-01-27-1060464 RANDOM 187775094;189501749 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047952/ERR047952_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047952/ERR047952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047952/6630_1#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047952/ERR047952_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047952/ERR047952_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047952/6630_1#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 485164482 ERS019433 ERX025015 GENOMIC 2952062 454372350 2011-10-11 SC_RUN_6630_1#11 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047952/6630_1#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR084269 SC_EXP_7038_8#43 239 836fc1496437c53ad3a5b83ba9456b95 1313 09f2a53602a9c419d18a69d9d7668ff1;4312e95f67b0980d4de4732dfef235f9 SAMEA1025927 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084269/ERR084269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084269/ERR084269_2.fastq.gz 3912248 WGS SMRU2251-sc-2011-01-27-1062464 RANDOM 250821435;253246715 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084269/ERR084269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084269/ERR084269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084269/7038_8#43.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084269/ERR084269_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084269/ERR084269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084269/7038_8#43.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 940925878 ERS021760 ERX062035 GENOMIC 3593319 586837200 2012-02-07 SC_RUN_7038_8#43 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084269/7038_8#43.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR051453 SC_EXP_6730_3#19 238 6819fd6a35da94754db79420aac78a39 1313 9c96f63c80955bbaa0503e85a6bfcd6e;a97d4bbaf9d3f2470c7477e1a197ef21 SAMEA1024675 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051453/ERR051453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051453/ERR051453_2.fastq.gz 7656708 WGS SMRU619-sc-2011-01-27-1060808 RANDOM 459422526;479903454 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051453/ERR051453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051453/ERR051453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051453/6730_3#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051453/ERR051453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051453/ERR051453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051453/6730_3#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1164190009 ERS020129 ERX028501 GENOMIC 3100097 1148506200 2011-11-02 SC_RUN_6730_3#19 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051453/6730_3#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR2305572 SC_EXP_23495_7#16 416 d82f9c6923b72d628ee0146243b72bc6;6b4ab4cf49134086b763ca979686bf60 1313 90b074c961d9670b259002922c56a6a0;a7230dc64d49fc63a966bff115e162ad SAMEA104034795 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305572/ERR2305572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305572/ERR2305572_2.fastq.gz 1751136 WGS f3aed040-13c3-11e7-942b-3c4a9275d6c8 RANDOM 51753542;58845971 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305572/ERR2305572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305572/ERR2305572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305572/23495_7#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305572/23495_7#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305572/ERR2305572_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305572/ERR2305572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305572/23495_7#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305572/23495_7#16.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 79040583;2957 ERS1698688 ERX2356882 GENOMIC DN483688I:H2 264421536 2018-02-16 SC_RUN_23495_7#16 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305572/23495_7#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305572/23495_7#16.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808762 ERR2305634 SC_EXP_23495_7#78 397 68966bc519300c63133f3ada0f48291b;b3aa0b9cabc19d028dad4d036f67f4d0 1313 16077a2a04190719b6eddf7f167ca34c;699757fc7c2f8754a77a494ede65e36b SAMEA104034858 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305634/ERR2305634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305634/ERR2305634_2.fastq.gz 1566686 WGS f5e697d0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 44913408;50302145 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305634/ERR2305634_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305634/ERR2305634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305634/23495_7#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305634/23495_7#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305634/ERR2305634_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305634/ERR2305634_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305634/23495_7#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305634/23495_7#78.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 67840404;2740 ERS1698751 ERX2356944 GENOMIC DN483688I:F10 236569586 2018-02-16 SC_RUN_23495_7#78 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305634/23495_7#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305634/23495_7#78.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808825 ERR2305530 SC_EXP_22984_8#68 341 75d3125b6f2b73fd1d4633d2fae5ef8c;0966efe6de6e7a34dd52bc508e57cded 1313 7a303b088c04cc395c6f4f9f4e6f4a53;8351bb771d1fe77ee18bdf48347c8f49 SAMEA104035038 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305530/ERR2305530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305530/ERR2305530_2.fastq.gz 2360974 WGS 03b8f420-13c4-11e7-942b-3c4a9275d6c8 RANDOM 64823995;85203931 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305530/ERR2305530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305530/ERR2305530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305530/22984_8#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305530/22984_8#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305530/ERR2305530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305530/ERR2305530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305530/22984_8#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305530/22984_8#68.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 109184595;3964 ERS1698931 ERX2356840 GENOMIC DN483712O:D9 356507074 2018-02-16 SC_RUN_22984_8#68 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305530/22984_8#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305530/22984_8#68.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809007 ERR2305207 SC_EXP_22695_3#166 425 713416365b8a46fb9e0040d36ddcd624;2ffb2794e289437b4c78aabe9d8ada4a 1313 584729913debd3f2eba07d525b0dafb9;aac6007d6e7921d861f77c9c3ce7b43d SAMEA104034755 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305207/ERR2305207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305207/ERR2305207_2.fastq.gz 2519018 WGS ee1f5230-13c3-11e7-942b-3c4a9275d6c8 RANDOM 68404710;91186220 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305207/ERR2305207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305207/ERR2305207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305207/22695_3#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305207/22695_3#166.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305207/ERR2305207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305207/ERR2305207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305207/22695_3#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305207/22695_3#166.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 117586709;4179 ERS1698648 ERX2356517 GENOMIC DN477141M:G9 380371718 2018-02-16 SC_RUN_22695_3#166 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305207/22695_3#166.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305207/22695_3#166.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808721 ERR2305262 SC_EXP_22695_3#221 427 d243915df03b0aae4cd77bc9f99dde69;f47382928507176f804f01688753b85c 1313 4b5bf1baedb6aeb4007a074e7a468c24;71d47b0069041a24f78e93cc7c25b747 SAMEA104034905 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305262/ERR2305262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305262/ERR2305262_2.fastq.gz 2205102 WGS fb5a5080-13c3-11e7-942b-3c4a9275d6c8 RANDOM 59061699;79806185 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305262/ERR2305262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305262/ERR2305262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305262/22695_3#221.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305262/22695_3#221.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305262/ERR2305262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305262/ERR2305262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305262/22695_3#221.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305262/22695_3#221.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 101453456;3753 ERS1698798 ERX2356572 GENOMIC DN477146R:G4 332970402 2018-02-16 SC_RUN_22695_3#221 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305262/22695_3#221.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305262/22695_3#221.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808873 ERR2305110 SC_EXP_22695_3#69 421 0488fd2e23861093670291dbd6230c2c;9a3f01c4cb203fecadc6e67f606ed6d3 1313 d1b677664d8fbeb21b9fe464f9e30117;6620f7b92f68cef727ad02e1ae099bad SAMEA104034658 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305110/ERR2305110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305110/ERR2305110_2.fastq.gz 2196648 WGS e707d490-13c3-11e7-942b-3c4a9275d6c8 RANDOM 60430870;83771922 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305110/ERR2305110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305110/ERR2305110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305110/22695_3#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305110/22695_3#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305110/ERR2305110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305110/ERR2305110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305110/22695_3#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305110/22695_3#69.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106037836;3698 ERS1698551 ERX2356420 GENOMIC DN477140L:E9 331693848 2018-02-16 SC_RUN_22695_3#69 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305110/22695_3#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305110/22695_3#69.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808623 ERR2090676 SC_EXP_22841_1#135 443 5c5bef947e41ab3ab0b197d828a88103;5a266d50cb76b0bd8aba569d2e0bcf67 1313 e1ba91b2b3cf93a0e8d2eb88e98493a2;3af3cfdb25de271dc9424b396538dfcd SAMEA104035521 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090676/ERR2090676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090676/ERR2090676_2.fastq.gz 2142598 WGS a7f84380-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 42137744;45699073 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090676/ERR2090676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090676/ERR2090676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090676/22841_1#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090676/22841_1#135.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090676/ERR2090676_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090676/ERR2090676_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090676/22841_1#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090676/22841_1#135.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 61190498;3596 ERS1699414 ERX2147470 GENOMIC DN477156T:H5 267824750 2017-08-08 SC_RUN_22841_1#135 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090676/22841_1#135.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090676/22841_1#135.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#135 ERR1947825 SC_EXP_21946_6#305 449 a38d46fb97371d6c01814849cebb0f3f;05ea61b9b60cc9b3990b34c10abbddf3 1313 30a31f2bcde6ecc3d733c15ae6db21a6;3e514dfface2e585f3d8ad2e5dffaee2 SAMEA4561121 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947825/ERR1947825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947825/ERR1947825_2.fastq.gz 2463926 WGS 0b720910-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 63623933;87968625 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947825/ERR1947825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947825/ERR1947825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947825/21946_6#305.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947825/21946_6#305.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947825/ERR1947825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947825/ERR1947825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947825/21946_6#305.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947825/21946_6#305.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 110766192;4113 ERS1460300 ERX2013612 GENOMIC 18471525 372052826 2017-04-25 SC_RUN_21946_6#305 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947825/21946_6#305.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947825/21946_6#305.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947534 SC_EXP_21946_6#14 475 8671585b80b3686a8f21f7e6def303f4;6023dcb9f7c45fe49047be970d1e925b 1313 7fad30dfb9d28a3b02227a101f8e814a;0f9d694efbb54f2a08dfa92363b4083e SAMEA4561563 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947534/ERR1947534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947534/ERR1947534_2.fastq.gz 2177444 WGS 360b56e0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58498015;82694942 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947534/ERR1947534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947534/ERR1947534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947534/21946_6#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947534/21946_6#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947534/ERR1947534_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947534/ERR1947534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947534/21946_6#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947534/21946_6#14.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103754188;3689 ERS1460742 ERX2013321 GENOMIC 18471679 328794044 2017-04-25 SC_RUN_21946_6#14 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947534/21946_6#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947534/21946_6#14.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947456 SC_EXP_21903_8#302 437 67ee0db084e820db3d8b05f1f42de260;1de339c4d549441f3ac57981fa4c0e60 1313 8c4f7e16a2cccfe469d5c5b9ecf93d7f;18d237b64ee8e8c261f8dc736384c3b6 SAMEA4561484 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947456/ERR1947456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947456/ERR1947456_2.fastq.gz 2053442 WGS 2e27fdc0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 50905236;75003406 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947456/ERR1947456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947456/ERR1947456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947456/21903_8#302.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947456/21903_8#302.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947456/ERR1947456_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947456/ERR1947456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947456/21903_8#302.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947456/21903_8#302.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 91905747;3524 ERS1460663 ERX2013243 GENOMIC 18453182 310069742 2017-04-25 SC_RUN_21903_8#302 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947456/21903_8#302.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947456/21903_8#302.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947360 SC_EXP_21903_8#206 431 5f565101a9fabca1598de50416447a9a;b9fe966b31760f104bd6168ce57e2816 1313 abc1f5ab7d65af59f66ceb24f8142127;0b182900a421ccc6fa82e5370db40ad7 SAMEA4561388 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947360/ERR1947360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947360/ERR1947360_2.fastq.gz 1930038 WGS 25344610-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 49806209;72631996 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947360/ERR1947360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947360/ERR1947360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947360/21903_8#206.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947360/21903_8#206.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947360/ERR1947360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947360/ERR1947360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947360/21903_8#206.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947360/21903_8#206.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 89301376;3280 ERS1460567 ERX2013147 GENOMIC 18453132 291435738 2017-04-25 SC_RUN_21903_8#206 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947360/21903_8#206.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947360/21903_8#206.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947237 SC_EXP_21903_8#83 450 16fade8df9a89c818f4e7aeee7f449f6;eb23c5d6baa34ea57ad0146b9c51d9e0 1313 bdce9552719652da427f69ca3ad7de7c;d4ef063fc99a6ca0fe4389f875ed2d3d SAMEA4561263 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947237/ERR1947237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947237/ERR1947237_2.fastq.gz 2070662 WGS 1aba1570-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53117493;78567645 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947237/ERR1947237_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947237/ERR1947237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947237/21903_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947237/21903_8#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947237/ERR1947237_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947237/ERR1947237_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947237/21903_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947237/21903_8#83.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 96621278;3496 ERS1460442 ERX2013024 GENOMIC 18430223 312669962 2017-04-25 SC_RUN_21903_8#83 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947237/21903_8#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947237/21903_8#83.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1065897 SC_EXP_17150_6#71 464 f82c2d3b7ddf7f659cdf97c79af54efa;def49bf91a75ba3aa24af466539adbbc 1313 101d2ffaf2937cc36dd57c67a195aa5e;8da89c16f958cd26cc7ce56e229d7214 SAMEA3354214 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065897/ERR1065897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065897/ERR1065897_2.fastq.gz 4584914 WGS GPS_ZA_carriage_SP1899-sc-2278822 RANDOM 86875265;83681968 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065897/ERR1065897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065897/ERR1065897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065897/17150_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065897/17150_6#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065897/ERR1065897_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065897/ERR1065897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065897/17150_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065897/17150_6#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 129826945;7525 ERS708569 ERX1146047 GENOMIC 14438236 573114250 2015-10-13 SC_RUN_17150_6#71 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065897/17150_6#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065897/17150_6#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#71 ERR997569 SC_EXP_16399_6#28 220 4712e866524782b2b9d49597c108d24f;104f544bfd641d45a2d7b72ffebac268 1313 fc4e1283087b2fa270a8943f12d90397;2746bbba3a245d7dfe0e49971172f8ad SAMEA3309606 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997569/ERR997569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997569/ERR997569_2.fastq.gz 5387556 WGS GPS_GM_1625-sc-2206408 RANDOM 183637207;191251014 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997569/ERR997569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997569/ERR997569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997569/16399_6#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997569/16399_6#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997569/ERR997569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997569/ERR997569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997569/16399_6#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997569/16399_6#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305791812;8531 ERS686068 ERX1076605 GENOMIC 13835404 538755600 2015-09-04 SC_RUN_16399_6#28 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997569/16399_6#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997569/16399_6#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#28 ERR1191914 SC_EXP_17794_7#92 458 20584b8784ee4d476c791d9ee663b238;56ef361ad4aecf67dfbb1fb2eefc34d0 1313 4cf07be90d448577d3c669d11bcc3005;9aef8e67c63c04c269b083af6532f1da SAMEA3381408 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191914/ERR1191914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191914/ERR1191914_2.fastq.gz 3533718 WGS GPS_GM_1920-sc-2279285 RANDOM 71085004;71218188 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191914/ERR1191914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191914/ERR1191914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191914/17794_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191914/17794_7#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1191914/ERR1191914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1191914/ERR1191914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191914/17794_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191914/17794_7#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 112088266;5823 ERS719667 ERX1265298 GENOMIC 14934778 441714750 2015-12-17 SC_RUN_17794_7#92 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191914/17794_7#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191914/17794_7#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#92 ERR1947236 SC_EXP_21903_8#82 422 847c1f0e15cd960fcded879fb4acff69;5e725e7473aed56ce052707e761d89f4 1313 dc56dfdc6fa529fc2b4bd32d3972e0b7;c9e8a1a450ec01f2ff5623b3d21a8679 SAMEA4561262 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947236/ERR1947236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947236/ERR1947236_2.fastq.gz 3237552 WGS 1ab22630-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 81118922;117127777 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947236/ERR1947236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947236/ERR1947236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947236/21903_8#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947236/21903_8#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947236/ERR1947236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947236/ERR1947236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947236/21903_8#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947236/21903_8#82.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 145891479;5343 ERS1460441 ERX2013023 GENOMIC 18430211 488870352 2017-04-25 SC_RUN_21903_8#82 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947236/21903_8#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947236/21903_8#82.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1288834 SC_EXP_18456_1#25 459 85c226fb06dc675acb9d97f8e723dfe0;9504b83b9998a6c350c006d41cbd22ce 1313 eac11d342e307226b063cf2eeaecaf6c;5e75db23b7062c708b87b35438481843 SAMEA3389219 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288834/ERR1288834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288834/ERR1288834_2.fastq.gz 2383588 WGS GPS_MW_148862-sc-2295692 RANDOM 58042015;52578391 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288834/ERR1288834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/004/ERR1288834/ERR1288834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288834/18456_1#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288834/18456_1#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288834/ERR1288834_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/004/ERR1288834/ERR1288834_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288834/18456_1#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288834/18456_1#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78727992;3943 ERS725322 ERX1360440 GENOMIC 14970283 297948500 2016-02-23 SC_RUN_18456_1#25 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288834/18456_1#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288834/18456_1#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#25 ERR997501 SC_EXP_16399_5#40 228 b6f2ab8ea2bf0feb05eff07943b38942;2c475ecad7bd83a0fc8880b986090722 1313 65cd6f0c04fffafc24dfef41c7204b9c;bc280a23ddbfac08c7b9a79d0d988ee8 SAMEA3309713 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997501/ERR997501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997501/ERR997501_2.fastq.gz 5617874 WGS GPS_GM_1731-sc-2206527 RANDOM 179516284;186635313 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997501/ERR997501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997501/ERR997501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997501/16399_5#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997501/16399_5#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997501/ERR997501_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997501/ERR997501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997501/16399_5#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997501/16399_5#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298963910;8939 ERS686175 ERX1076537 GENOMIC 13835552 561787400 2015-09-04 SC_RUN_16399_5#40 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997501/16399_5#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997501/16399_5#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#40 ERR913384 SC_EXP_15873_4#69 216 d0f9ab0edaa088cf3316ef3aff9570f7;eb9361483924abdfe7708dae4e1d7bb8 1313 3d2b52acdbcc7eb08565db15ee0e065e;a0a2454f6c82ddb67e8ffdc3e8eb7684 SAMEA3233384 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913384/ERR913384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913384/ERR913384_2.fastq.gz 5158062 WGS GPS_GM_1508-sc-2206142 RANDOM 155773568;163026204 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913384/ERR913384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913384/ERR913384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913384/15873_4#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913384/15873_4#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913384/ERR913384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913384/ERR913384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913384/15873_4#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913384/15873_4#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258914620;8270 ERS654577 ERX992508 GENOMIC 13308294 515806200 2015-06-17 SC_RUN_15873_4#69 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913384/15873_4#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913384/15873_4#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_4#69 ERR730449 SC_EXP_14520_7#26 213 437b494f93ed0e31f574428dcceeecc6;18113dc973db1fbf6cc8d3c865a45add 1313 36a552aec21f397c5e85e1c663cd5cf9;115f14d69a85f0c8cd01b506f2181f50 SAMEA2696594 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730449/ERR730449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730449/ERR730449_2.fastq.gz 4738044 WGS GPS_GM_0829-sc-2022051 RANDOM 174180964;177787964 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730449/ERR730449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730449/ERR730449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730449/14520_7#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730449/14520_7#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730449/ERR730449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730449/ERR730449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730449/14520_7#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730449/14520_7#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288688178;7661 ERS525173 ERX674395 GENOMIC 11983399 473804400 2015-01-14 SC_RUN_14520_7#26 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730449/14520_7#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730449/14520_7#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_7#26 ERR862436 SC_EXP_15378_3#83 191 cfc767f96674896a9b57fbb52fc2dccb;bb059f4b903166ebfefcb61fe1a8fae9 1313 a48504eab731d2e57a710cdec1977329;ab505441d8561d4eb23fb203a291d0f4 SAMEA3171120 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862436/ERR862436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862436/ERR862436_2.fastq.gz 5071926 WGS GPS_MW_514-sc-2139683 RANDOM 176541537;182296030 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862436/ERR862436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862436/ERR862436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862436/15378_3#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862436/15378_3#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862436/ERR862436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862436/ERR862436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862436/15378_3#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862436/15378_3#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293855529;8187 ERS625511 ERX942086 GENOMIC 12815420 507192600 2015-04-21 SC_RUN_15378_3#83 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862436/15378_3#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862436/15378_3#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#83 ERR862389 SC_EXP_15378_3#36 191 cb6201c111aae431bdfae82de370b690;99942e4b7ab58f66a036d1a15128ae7f 1313 537b13ad94822c5717e1001d8f604785;38a025f93a4d2f12d2b4f56db5dc323f SAMEA3171071 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862389/ERR862389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862389/ERR862389_2.fastq.gz 3836620 WGS GPS_MW_1558-sc-2139633 RANDOM 134845827;139559762 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862389/ERR862389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862389/ERR862389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862389/15378_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862389/15378_3#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862389/ERR862389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862389/ERR862389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862389/15378_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862389/15378_3#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 223609577;6137 ERS625462 ERX942039 GENOMIC 12815426 383662000 2015-04-21 SC_RUN_15378_3#36 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862389/15378_3#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862389/15378_3#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#36 ERR730171 SC_EXP_14520_4#31 222 310e5ea87f4a4447c47a7ba1db311215;a7b6e69b849519acf049569f9a907198 1313 785aede78ced436070a33011997df568;78c26e7323ccc7d5c8b28505cbb269a1 SAMEA2696313 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730171/ERR730171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730171/ERR730171_2.fastq.gz 5417332 WGS GPS_GM_0549-sc-2021768 RANDOM 203120261;207335325 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730171/ERR730171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730171/ERR730171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730171/14520_4#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730171/14520_4#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730171/ERR730171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730171/ERR730171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730171/14520_4#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730171/14520_4#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 340058518;8867 ERS524892 ERX674117 GENOMIC 11982818 541733200 2015-01-14 SC_RUN_14520_4#31 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730171/14520_4#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730171/14520_4#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#31 ERR730515 SC_EXP_14520_7#92 213 6a4e19ce5e5d8bb54b36b8f2cc6e0416;f91037cc5f604402f01359f6dc4abcbf 1313 acaa6187104989e111c9a2093d97bda1;773af749066211c55c7c642089667395 SAMEA2696660 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730515/ERR730515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730515/ERR730515_2.fastq.gz 4653610 WGS GPS_GM_0895-sc-2022117 RANDOM 180855883;184825281 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730515/ERR730515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730515/ERR730515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730515/14520_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730515/14520_7#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730515/ERR730515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730515/ERR730515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730515/14520_7#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730515/14520_7#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295175733;7529 ERS525239 ERX674461 GENOMIC 11983431 465361000 2015-01-14 SC_RUN_14520_7#92 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730515/14520_7#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730515/14520_7#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_7#92 ERR577956 SC_EXP_13091_6#13 242 8fa7d88444fccaa4451343f0bbdef059;ba9478247dd8fa0019aaf3020ce97f4f 1313 bb071ad34f444876d4830084035f3d81;3c3cff1cfcbcee224835525cc18ac648 SAMEA2467462 2014-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577956/ERR577956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577956/ERR577956_2.fastq.gz 4576626 WGS PATH3515-sc-1926247 RANDOM 157641227;159615413 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577956/ERR577956_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577956/ERR577956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577956/13091_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577956/13091_6#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577956/ERR577956_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577956/ERR577956_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577956/13091_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577956/13091_6#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263363079;7525 ERS437219 ERX536132 GENOMIC 10228120 457662600 2014-08-12 SC_RUN_13091_6#13 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577956/13091_6#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577956/13091_6#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA346681 13091_6#13 ERR586462 SC_EXP_13154_4#4 250 d1c7d37d5e693000a6ff9f6a3d048179;be53d2633a1dc3cad09e5198ef73645f 1313 31699042f0aef7ce35fc120671dc559b;b74c0406532c57055f1781f99ca78be4 SAMEA2434636 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586462/ERR586462_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586462/ERR586462_2.fastq.gz 11633810 WGS SA_GPS_SP531-sc-1895701 RANDOM 355220878;370781833 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586462/ERR586462_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586462/ERR586462_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586462/13154_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586462/13154_4#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586462/ERR586462_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586462/ERR586462_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586462/13154_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586462/13154_4#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 610959218;18405 ERS428813 ERX544470 GENOMIC 10292483 1163381000 2014-08-27 SC_RUN_13154_4#4 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586462/13154_4#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586462/13154_4#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_4#4 ERR600150 SC_EXP_13414_2#6 233 e8e4e6808ed75ac40b4141f2388b8a79;e8b15c2900e78f2866bdd74b7085d974 1313 fa9e49c1df07cfeb7853db880e4b5a13;409c17e5cd508eb978a83c903546c17e SAMEA2521557 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600150/ERR600150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600150/ERR600150_2.fastq.gz 4765310 WGS 2012213994-sc-1946849 RANDOM 158802393;162734539 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600150/ERR600150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600150/ERR600150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600150/13414_2#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600150/13414_2#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600150/ERR600150_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600150/ERR600150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600150/13414_2#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600150/13414_2#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265621269;7771 ERS455097 ERX556979 GENOMIC 10600554 476531000 2014-09-16 SC_RUN_13414_2#6 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600150/13414_2#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600150/13414_2#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#6 ERR568752 SC_EXP_12838_1#63 250 6cc2bdc6adbfaf1bd002cbfe615d0951;7e9f5ffe03acdec4a1e6eda46c2ce2c4 1313 cdf0ce178e47429df0c84e749ef34676;8dee34ddf51db9596f2ac4f98ea8f65a SAMEA2335687 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568752/ERR568752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568752/ERR568752_2.fastq.gz 6133414 WGS PATH2524-sc-1810612 RANDOM 202620976;190047845 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568752/ERR568752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568752/ERR568752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568752/12838_1#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568752/12838_1#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568752/ERR568752_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568752/ERR568752_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568752/12838_1#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568752/12838_1#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322754842;10005 ERS393881 ERX527741 GENOMIC 9723845 613341400 2014-07-23 SC_RUN_12838_1#63 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568752/12838_1#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568752/12838_1#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12838_1#63 ERR563670 SC_EXP_12754_1#11 223 2554eb5502a17b1b7a7c243ca15801fa;08c2a3323de0d6cdba51e12d8f35b975 1313 b64cd904223a0545b22aaf28e9e496ca;a668210571fb2483829a3dfcc8cc1445 SAMEA2382936 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563670/ERR563670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563670/ERR563670_2.fastq.gz 5065108 WGS 2080027_II-sc-1870185 RANDOM 170383049;175798272 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563670/ERR563670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563670/ERR563670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563670/12754_1#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563670/12754_1#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563670/ERR563670_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563670/ERR563670_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563670/12754_1#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563670/12754_1#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 285692500;8291 ERS409261 ERX522695 GENOMIC 9918495 506510800 2014-07-16 SC_RUN_12754_1#11 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563670/12754_1#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563670/12754_1#11.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#11 ERR505797 SC_EXP_12291_4#85 230 9f242e173c5b284a3e349252e81f4207;c94688eb77b65890337cf0192ef70631 1313 4e37b48b5f4bb649e080ee6e3a556bca;bf4fb86da69ce021f2b04c0bb2240afa SAMEA2336017 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505797/ERR505797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505797/ERR505797_2.fastq.gz 4386908 WGS 2010208374-sc-1810945 RANDOM 140062357;145149790 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505797/ERR505797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505797/ERR505797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505797/12291_4#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505797/12291_4#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505797/ERR505797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505797/ERR505797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505797/12291_4#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505797/12291_4#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232119920;7171 ERS394211 ERX471154 GENOMIC 9444700 438690800 2014-05-19 SC_RUN_12291_4#85 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505797/12291_4#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505797/12291_4#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#85 ERR461468 SC_EXP_11861_1#95 225 93327e2893cd7562af7717f7d9b4538d;876b926a53c86878549b10bc7311809b 1313 73ffc6377f03f9519a6b1bf23afa5ab6;39ebdd412f973575c4d66cd8ec8372dd SAMEA2238661 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461468/ERR461468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461468/ERR461468_2.fastq.gz 4851550 WGS 2091209-sc-2013-11-05T12:00:15Z-1750023 RANDOM 156711949;163742630 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461468/ERR461468_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461468/ERR461468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461468/11861_1#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461468/11861_1#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461468/ERR461468_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461468/ERR461468_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461468/11861_1#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461468/11861_1#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 262790729;7824 ERS367473 ERX427809 GENOMIC 9016191 485155000 2014-03-18 SC_RUN_11861_1#95 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461468/11861_1#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461468/11861_1#95.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR505714 SC_EXP_12291_3#87 215 b4e73fbad2a89281ba6293d5906f9b02;06aa335c9846b68530b9a11771a21c15 1313 311322760a54624d61133df16025d707;baf5ee9d3536dd066e813a72d0c1c781 SAMEA2335929 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505714/ERR505714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505714/ERR505714_2.fastq.gz 4413186 WGS PATH3487-sc-1810856 RANDOM 140110237;146472970 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505714/ERR505714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505714/ERR505714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505714/12291_3#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505714/12291_3#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505714/ERR505714_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505714/ERR505714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505714/12291_3#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505714/12291_3#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234017561;7087 ERS394123 ERX471071 GENOMIC 9439888 441318600 2014-05-19 SC_RUN_12291_3#87 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505714/12291_3#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505714/12291_3#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#87 ERR461055 SC_EXP_11860_5#52 210 da15f95b3b88d300a1d147b7fe234949;096293021a4d7747cdcf3667f295e329 1313 6af8977bc9cdc47d30b8831242626a8f;562327dd7f7e2c21e2a608876ea44049 SAMEA2238421 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461055/ERR461055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461055/ERR461055_2.fastq.gz 1948758 WGS 2071078-sc-2013-11-05T11:56:08Z-1749780 RANDOM 53960125;57106872 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461055/ERR461055_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461055/ERR461055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461055/11860_5#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461055/11860_5#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461055/ERR461055_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461055/ERR461055_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461055/11860_5#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461055/11860_5#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 87553926;3230 ERS367233 ERX427396 GENOMIC 9014525 194875800 2014-03-18 SC_RUN_11860_5#52 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461055/11860_5#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461055/11860_5#52.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#52 ERR433938 SC_EXP_11658_2#93 231 94014637f104b1897d16e7383986012a;33f328cab13cc8deccf676e6b0b03702 1313 91787191c0cbb36cee1decd58ae744c5;f2c854040621410db064b91df336d1ec SAMEA2203819 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433938/ERR433938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433938/ERR433938_2.fastq.gz 5213442 WGS 2010208312-sc-2013-10-09T11:50:00Z-1712408 RANDOM 171304122;178484949 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433938/ERR433938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433938/ERR433938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433938/11658_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433938/11658_2#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433938/ERR433938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433938/ERR433938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433938/11658_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433938/11658_2#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288568437;8511 ERS356323 ERX400213 GENOMIC 8593362 521344200 2014-02-18 SC_RUN_11658_2#93 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433938/11658_2#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433938/11658_2#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#93 ERR340892 SC_EXP_10208_2#82 215 313c32d852730ec9a7a7801947dd276b 1313 1534b3d6db930d2d5f128c8262a5595c;23a78d93d33548bc4b58b8f7050e36a6 SAMEA1966748 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340892/ERR340892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340892/ERR340892_2.fastq.gz 3020159 WGS PBCN0488-sc-2013-03-27T13:21:54Z-1603794 RANDOM 205392781;236389306 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340892/ERR340892_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340892/ERR340892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340892/10208_2#82.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340892/ERR340892_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340892/ERR340892_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340892/10208_2#82.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 598717217 ERS225927 ERX313741 GENOMIC 7400599 604031800 2013-09-16 SC_RUN_10208_2#82 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340892/10208_2#82.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#82 ERR461559 SC_EXP_11861_3#5 226 dff3c6484d402e76961efd4e965eb7da;1586a6b8c464a5d38c69041eba23d78a 1313 564f158d35accc18e7b0b8811f3c96ff;1feab871a18f84a9ea116e00b55fcd45 SAMEA2238860 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461559/ERR461559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461559/ERR461559_2.fastq.gz 4344458 WGS 2110097-sc-2013-11-05T12:03:56Z-1750224 RANDOM 147225399;152801138 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461559/ERR461559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461559/ERR461559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461559/11861_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461559/11861_3#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461559/ERR461559_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461559/ERR461559_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461559/11861_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461559/11861_3#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 248018542;6907 ERS367672 ERX427900 GENOMIC 9016254 434445800 2014-03-18 SC_RUN_11861_3#5 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461559/11861_3#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461559/11861_3#5.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#5 ERR129208 SC_EXP_7622_5#88 225 7a9260e182a3f10c1fec3ee4502f2f17 1313 5e397124adb4a1134da086ed9470dca1;6a81a6fe77e7691c13408f83c36bf1ed SAMEA1463261 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129208/ERR129208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129208/ERR129208_2.fastq.gz 3350794 WGS ND6059-sc-2011-11-08T10:08:36Z-1298467 RANDOM 355399672;367609834 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129208/ERR129208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129208/ERR129208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129208/7622_5#88.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129208/ERR129208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129208/ERR129208_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129208/7622_5#88.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 701664527 ERS070099 ERX105349 GENOMIC 4336617 670158800 2012-05-28 SC_RUN_7622_5#88 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129208/7622_5#88.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124238 SC_EXP_7553_4#22 206 2b1d24d1af1f6b37660eab4f24f6924d 1313 9fd37c9d4c0a637b750b13f3d03b7a06;1b0346b25002be6774fbe47cbb181824 SAMEA1463011 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124238/ERR124238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124238/ERR124238_2.fastq.gz 6317391 WGS ND6144-sc-2011-11-08T10:08:58Z-1298497 RANDOM 667622794;666309363 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124238/ERR124238_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124238/ERR124238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124238/7553_4#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124238/ERR124238_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124238/ERR124238_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124238/7553_4#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1286961916 ERS070129 ERX100420 GENOMIC 4382946 1263478200 2012-05-09 SC_RUN_7553_4#22 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124238/7553_4#22.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR129147 SC_EXP_7622_4#27 221 b73296691933c7b68832a65359f30656 1313 e9f0478664da62f54bfb0c58b4d6c68c;388e195d5aa9e86c0474a9fd19cb6618 SAMEA1463142 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129147/ERR129147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129147/ERR129147_2.fastq.gz 2532675 WGS LE4083-sc-2011-11-08T10:07:51Z-1298406 RANDOM 272262672;278566208 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129147/ERR129147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129147/ERR129147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129147/7622_4#27.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129147/ERR129147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129147/ERR129147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129147/7622_4#27.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 538628514 ERS070038 ERX105288 GENOMIC 4336556 506535000 2012-05-28 SC_RUN_7622_4#27 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129147/7622_4#27.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR048202 SC_EXP_6631_7#21 213 b03f07ff74ff643383d0a13695aa2e8f 1313 bc7d4aa7b586603f6f1841ccb1c16fc6;4186ff55eba249a04c808618a3cf6462 SAMEA1023718 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048202/ERR048202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048202/ERR048202_2.fastq.gz 4027636 WGS SMRU525-sc-2011-01-27-1060714 RANDOM 224479677;219881201 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048202/ERR048202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048202/ERR048202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048202/6631_7#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048202/ERR048202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048202/ERR048202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048202/6631_7#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 559836051 ERS019683 ERX025265 GENOMIC 3037844 604145400 2011-10-11 SC_RUN_6631_7#21 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048202/6631_7#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR124245 SC_EXP_7553_4#29 206 a4e51a8847905edcda5b03d081f2706c 1313 7c03c92e05b0cbdcb01bb8d2a07442fc;04aef64f22a2f6b200ae9311779b2d48 SAMEA1463252 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124245/ERR124245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124245/ERR124245_2.fastq.gz 5556975 WGS NP7006-sc-2011-11-08T10:09:03Z-1298504 RANDOM 589265023;588818497 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124245/ERR124245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124245/ERR124245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124245/7553_4#29.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124245/ERR124245_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124245/ERR124245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124245/7553_4#29.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1138727505 ERS070136 ERX100427 GENOMIC 4382953 1111395000 2012-05-09 SC_RUN_7553_4#29 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124245/7553_4#29.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR048113 SC_EXP_6631_4#4 234 208a5aaf4cfd72cbabea5bf855bb895a 1313 5bb387a9cdb6cc911946034311601b41;8a107d39877cc64a9c6aa93a894ebeb1 SAMEA1023881 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048113/ERR048113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048113/ERR048113_2.fastq.gz 3281517 WGS SMRU436-sc-2011-01-27-1060625 RANDOM 185452237;174332882 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048113/ERR048113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048113/ERR048113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048113/6631_4#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048113/ERR048113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048113/ERR048113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048113/6631_4#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 460046128 ERS019594 ERX025176 GENOMIC 2952223 492227550 2011-10-11 SC_RUN_6631_4#4 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048113/6631_4#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR056706 SC_EXP_6775_1#24 207 ca2e0601f4733c5befba8962d802adf3 1313 40d6901f4e1a43576525227b262cd4b9;b2ab430aed979cbb30aff6c2df9521e9 SAMEA1024936 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056706/ERR056706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056706/ERR056706_2.fastq.gz 5703273 WGS SMRU840-sc-2011-01-27-1061029 RANDOM 355980361;375794715 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056706/ERR056706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056706/ERR056706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056706/6775_1#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056706/ERR056706_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056706/ERR056706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056706/6775_1#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 918505995 ERS020350 ERX034550 GENOMIC 3152361 855490950 2011-11-29 SC_RUN_6775_1#24 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056706/6775_1#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR084263 SC_EXP_7038_8#37 239 feb4f5fde9449ed38701375180f07765 1313 23b9ade5ed97d062545e02d8d2c72dcc;84197fc5713e3e810b361362226ed26e SAMEA1026035 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084263/ERR084263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084263/ERR084263_2.fastq.gz 5500919 WGS SMRU2245-sc-2011-01-27-1062458 RANDOM 349776811;352788991 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084263/ERR084263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084263/ERR084263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084263/7038_8#37.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084263/ERR084263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084263/ERR084263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084263/7038_8#37.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1311121829 ERS021754 ERX062029 GENOMIC 3593313 825137850 2012-02-07 SC_RUN_7038_8#37 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084263/7038_8#37.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR065348 SC_EXP_6930_8#16 236 5c6e2313c86897130f449b9829f558ae 1313 5ecfd3a24768e366c5f496c9a8a0907a;89d2b1ef1bd40a9e601e28a04348415b SAMEA1032467 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065348/ERR065348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065348/ERR065348_2.fastq.gz 3236774 WGS 3022-sc-2011-08-01T09:42:36Z-1249908 RANDOM 210564345;197802322 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065348/ERR065348_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065348/ERR065348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065348/6930_8#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065348/ERR065348_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065348/ERR065348_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065348/6930_8#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 514695370 ERS043843 ERX043321 GENOMIC 3565454 485516100 2012-01-05 SC_RUN_6930_8#16 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065348/6930_8#16.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR050061 SC_EXP_6680_8#6 230 7bc8ab7f88653a174adba4c4d476fc36 1313 b42b3b5176d1a4c96eda68b35c815347;c162f7193ca5eec2f3db8aa3fdcd6c66 SAMEA1023731 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050061/ERR050061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050061/ERR050061_2.fastq.gz 8308542 WGS SMRU198-sc-2011-01-27-1060387 RANDOM 473974186;495873946 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050061/ERR050061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050061/ERR050061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050061/6680_8#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050061/ERR050061_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050061/ERR050061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050061/6680_8#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1198490133 ERS019356 ERX027121 GENOMIC 2950531 1246281300 2011-10-25 SC_RUN_6680_8#6 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050061/6680_8#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR047150 SC_EXP_6570_1#5 254 b64fd83360545a0f0e73230cafd50436 1313 08c18f7866d3d3287ae17e73f7d3ac63;919d575bcef55e0a428cc0de0d4ee7d7 SAMEA1026724 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047150/ERR047150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047150/ERR047150_2.fastq.gz 4675471 WGS UoS5251-sc-2011-03-11-1099007 RANDOM 260948531;271910839 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047150/ERR047150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047150/ERR047150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047150/6570_1#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047150/ERR047150_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047150/ERR047150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047150/6570_1#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 677962622 ERS025197 ERX024212 GENOMIC 2744182 701320650 2011-09-27 SC_RUN_6570_1#5 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047150/6570_1#5.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 ERR046124 SC_EXP_6512_4#5 241 b203ed9643d26c01e2e0663e03587802 1313 926df26ab3165902932f432f85dcd56b;97e0e3c870e94847e88699210745d850 SAMEA1026734 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046124/ERR046124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046124/ERR046124_2.fastq.gz 5959931 WGS UoS3264-sc-2011-02-14-1078353 RANDOM 316929256;311596739 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046124/ERR046124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046124/ERR046124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046124/6512_4#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046124/ERR046124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046124/ERR046124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046124/6512_4#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 783887783 ERS023299 ERX023186 GENOMIC 2734971 893989650 2011-09-20 SC_RUN_6512_4#5 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046124/6512_4#5.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_4#5 ERR044928 SC_EXP_6470_5#23 192 e037fba58abaadab2c9dd7ad733438bd 1313 fdd0527499f429e263fc0bbcc5f2e6f1;fdcf2176703c3c825e6ddbf173be98f6 SAMEA1026578 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044928/ERR044928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044928/ERR044928_2.fastq.gz 5055904 WGS UoS0268-sc-2011-02-14-1078131 RANDOM 250002353;256709770 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044928/ERR044928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044928/ERR044928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044928/6470_5#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044928/ERR044928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044928/ERR044928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044928/6470_5#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 661100156 ERS023077 ERX022036 GENOMIC 2719158 758385600 2011-09-06 SC_RUN_6470_5#23 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044928/6470_5#23.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_5#23 ERR2305613 SC_EXP_23495_7#57 417 a2330a29b286c7a9b3325c82bad75a35;36c96d65dc64a66c769aa9c548d95cd6 1313 39b1c8812302f117d92e8864409d5076;67e5c1ca5377fe8ad445630e349573ea SAMEA104034836 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305613/ERR2305613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305613/ERR2305613_2.fastq.gz 1486018 WGS f53410b0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 43678630;49570777 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305613/ERR2305613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305613/ERR2305613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305613/23495_7#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305613/23495_7#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305613/ERR2305613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305613/ERR2305613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305613/23495_7#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305613/23495_7#57.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 66419640;2509 ERS1698729 ERX2356923 GENOMIC DN483688I:A8 224388718 2018-02-16 SC_RUN_23495_7#57 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305613/23495_7#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305613/23495_7#57.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808803 ERR1947697 SC_EXP_21946_6#177 469 51ac9761895869e399a1ad0e7ffd2a6f;1cf1ebe70090c1ff637ee35346a53238 1313 8165966d88549652608f882b0f46b8c0;66c7b1df4457a422c15d29811b1e8ccc SAMEA17731168 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947697/ERR1947697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947697/ERR1947697_2.fastq.gz 2585754 WGS 413bdf30-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 65362048;93354264 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947697/ERR1947697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947697/ERR1947697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947697/21946_6#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947697/21946_6#177.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947697/ERR1947697_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947697/ERR1947697_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947697/21946_6#177.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947697/21946_6#177.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 116361787;4389 ERS1461756 ERX2013484 GENOMIC 18471482 390448854 2017-04-25 SC_RUN_21946_6#177 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947697/21946_6#177.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947697/21946_6#177.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR2305475 SC_EXP_22984_8#13 350 eef2f9ec01a18f60ea08ff85d04ebcc5;b7eb670a72028d0542cf86795359682c 1313 1b4d5e4a483b2c8d00a195e5c8ab1ff4;633840c7f6cb53795eec0196b6e0f4dc SAMEA104034983 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305475/ERR2305475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305475/ERR2305475_2.fastq.gz 2417400 WGS 01e1c320-13c4-11e7-942b-3c4a9275d6c8 RANDOM 65134041;86957547 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305475/ERR2305475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305475/ERR2305475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305475/22984_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305475/22984_8#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305475/ERR2305475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305475/ERR2305475_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305475/22984_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305475/22984_8#13.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 111250585;4091 ERS1698876 ERX2356785 GENOMIC DN483712O:E2 365027400 2018-02-16 SC_RUN_22984_8#13 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305475/22984_8#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305475/22984_8#13.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808952 ERR1788211 SC_EXP_21127_1#12 470 d1337e559f9eea4d6c4dda6f6dde5232;3fda7aef8f851bfbd7275603fff25959 1313 b1ff000f8dd9a0f1cd101fec81034d08;76152b6188d6c6f5dc935fdd8fc3d1a6 SAMEA4388197 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788211/ERR1788211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788211/ERR1788211_2.fastq.gz 2153214 WGS 5c783b60-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 42839723;42427656 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788211/ERR1788211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788211/ERR1788211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788211/21127_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788211/21127_1#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788211/ERR1788211_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788211/ERR1788211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788211/21127_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788211/21127_1#12.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 60067953;3601 ERS1299646 ERX1851934 GENOMIC DN465133W:D2 269151750 2017-01-11 SC_RUN_21127_1#12 89 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788211/21127_1#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788211/21127_1#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#12 ERR1453768 SC_EXP_19341_3#120 438 577d21e26b8e27574674b99750affb4d;cbf6d621924b5d5113ef83a4d046f538 1313 41095fe04c8137f7efc1504b6ace8cc1;98c20a5dc682b90f452470ddd913a6b7 SAMEA3714085 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453768/ERR1453768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453768/ERR1453768_2.fastq.gz 2635730 WGS 42615e90-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 52726071;60191407 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453768/ERR1453768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453768/ERR1453768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453768/19341_3#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453768/19341_3#120.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453768/ERR1453768_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453768/ERR1453768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453768/19341_3#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453768/19341_3#120.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80889413;4435 ERS1021234 ERX1524246 GENOMIC 16008550 329466250 2016-06-14 SC_RUN_19341_3#120 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453768/19341_3#120.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453768/19341_3#120.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#120 ERR1540702 SC_EXP_19646_1#32 467 afdd7023aec3153edb761022c192e781;7db9094136840a1a5355325a7f927281 1313 0cc1dba0229c5a40985262ffb28aa6de;e7db0bc77d43a994011f9b94c0361411 SAMEA3448101 2016-07-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/002/ERR1540702/ERR1540702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/002/ERR1540702/ERR1540702_2.fastq.gz 3082052 WGS GPS_GM_2400-sc-2297016 RANDOM 60331193;64038693 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/002/ERR1540702/ERR1540702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/002/ERR1540702/ERR1540702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540702/19646_1#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540702/19646_1#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR154/002/ERR1540702/ERR1540702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR154/002/ERR1540702/ERR1540702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540702/19646_1#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540702/19646_1#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91281315;5183 ERS745675 ERX1611467 GENOMIC 15952141 385256500 2016-07-19 SC_RUN_19646_1#32 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR154/ERR1540702/19646_1#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR154/ERR1540702/19646_1#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA676148 19646_1#32 ERR1540700 SC_EXP_19646_1#30 443 b88675a875436216b9e4e4ed3b3d65c8;014548f36610d65151c17b7dab75f5da 1313 e958635940b3b10a449703382209848a;6e570ff745b9e1a3d80d9d3e889709b1 SAMEA3448096 2016-07-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/000/ERR1540700/ERR1540700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/000/ERR1540700/ERR1540700_2.fastq.gz 4805366 WGS GPS_GM_2398-sc-2297011 RANDOM 88266797;97984587 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/000/ERR1540700/ERR1540700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/000/ERR1540700/ERR1540700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540700/19646_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540700/19646_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR154/000/ERR1540700/ERR1540700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR154/000/ERR1540700/ERR1540700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540700/19646_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR154/ERR1540700/19646_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 139069201;8064 ERS745670 ERX1611465 GENOMIC 15952117 600670750 2016-07-19 SC_RUN_19646_1#30 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR154/ERR1540700/19646_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR154/ERR1540700/19646_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA676148 19646_1#30 ERR1430889 SC_EXP_19183_3#91 472 cc7c845d0ccd71b3dc89881820ed1fca;5f7b047a1da19cce41d77e6f25b53801 1313 02f595e35e4f273a9113acfeac428edf;d62d3be5c4a080f05c4f330e52c9c801 SAMEA3448017 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1430889/ERR1430889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1430889/ERR1430889_2.fastq.gz 2497614 WGS GPS_GM_2275-sc-2296931 RANDOM 49953615;49576823 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1430889/ERR1430889_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1430889/ERR1430889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430889/19183_3#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430889/19183_3#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1430889/ERR1430889_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1430889/ERR1430889_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430889/19183_3#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430889/19183_3#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71833027;4224 ERS745591 ERX1501267 GENOMIC 15923122 312201750 2016-06-01 SC_RUN_19183_3#91 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430889/19183_3#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430889/19183_3#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#91 ERR1430812 SC_EXP_19183_3#14 486 7e3aea794222b0dec108ca3e075caf2f;fe6a17cc0e66cbe76bd0c1012e5d695e 1313 d21a000fa758164edef770693988efef;9360c76b3500e318bb42743b1fe1aa56 SAMEA3447940 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1430812/ERR1430812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1430812/ERR1430812_2.fastq.gz 2442170 WGS GPS_GM_2203-sc-2296778 RANDOM 50338838;48271850 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1430812/ERR1430812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1430812/ERR1430812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430812/19183_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430812/19183_3#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1430812/ERR1430812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1430812/ERR1430812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430812/19183_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430812/19183_3#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71210830;4131 ERS745514 ERX1501190 GENOMIC 15923148 305271250 2016-06-01 SC_RUN_19183_3#14 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430812/19183_3#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430812/19183_3#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#14 ERR1422606 SC_EXP_19084_8#93 427 3e0be3332aa3e19c87328f0e94651ad2;266915c64dc90b170fd1e4ead33b078a 1313 af1293d31a2b65acc4a2b5afe221e411;edb961a7a3c3747c83db37424a3a9782 SAMEA3714430 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422606/ERR1422606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422606/ERR1422606_2.fastq.gz 2683906 WGS 5201eb30-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 64356817;63990549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422606/ERR1422606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422606/ERR1422606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422606/19084_8#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422606/19084_8#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422606/ERR1422606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422606/ERR1422606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422606/19084_8#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422606/19084_8#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 94700710;4431 ERS1021579 ERX1493188 GENOMIC 15758506 335488250 2016-05-24 SC_RUN_19084_8#93 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422606/19084_8#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422606/19084_8#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#93 ERR1422596 SC_EXP_19084_8#83 436 b2ab013e7e1312b7799381b9c879aa87;df9e83105e0dd46a4462a22a428aea5d 1313 56ddd789323ed5ac5d2f66a5491cd2c0;137f82c29a1237bdf59ed36ac0ab6cf0 SAMEA3714420 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422596/ERR1422596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422596/ERR1422596_2.fastq.gz 2713578 WGS 51b810f0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 62876715;63599004 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422596/ERR1422596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422596/ERR1422596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422596/19084_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422596/19084_8#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422596/ERR1422596_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422596/ERR1422596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422596/19084_8#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422596/19084_8#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91713161;4536 ERS1021569 ERX1493178 GENOMIC 15758411 339197250 2016-05-24 SC_RUN_19084_8#83 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422596/19084_8#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422596/19084_8#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#83 ERR1422568 SC_EXP_19084_8#55 429 b28b732b3d4db037afa4b38aef0c9d3d;759cce9532ff13514ec3be788e9518ff 1313 c84cfedeef08f49d94081392e4caed9f;86783f566b815e4b807a6ed6f587f1cf SAMEA3714392 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422568/ERR1422568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422568/ERR1422568_2.fastq.gz 2402822 WGS 4ea26c80-41bd-11e5-998e-3c4a9275d6c6 RANDOM 56605834;56436818 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422568/ERR1422568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422568/ERR1422568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422568/19084_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422568/19084_8#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422568/ERR1422568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422568/ERR1422568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422568/19084_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422568/19084_8#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81975074;4016 ERS1021541 ERX1493150 GENOMIC 15758455 300352750 2016-05-24 SC_RUN_19084_8#55 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422568/19084_8#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422568/19084_8#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#55 ERR1422588 SC_EXP_19084_8#75 454 5bbfe1ee9ec5451cec51dcfb054885dd;03c75e138178db36c18424fd85056511 1313 7e836cdda976c825082966beba8cc381;5e4e4d3f5c27e6840e06526f81a4fd86 SAMEA3714412 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422588/ERR1422588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422588/ERR1422588_2.fastq.gz 2690216 WGS 517d2ad0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 65519857;66185131 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422588/ERR1422588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422588/ERR1422588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422588/19084_8#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422588/19084_8#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422588/ERR1422588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422588/ERR1422588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422588/19084_8#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422588/19084_8#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96172697;4396 ERS1021561 ERX1493170 GENOMIC 15758410 336277000 2016-05-24 SC_RUN_19084_8#75 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422588/19084_8#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422588/19084_8#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#75 ERR1422450 SC_EXP_19084_7#121 453 4262b74ec8f8b2a8814b0327e92936fd;cb0fcad8c9f32de5e27215c819745c08 1313 749a326aba74169083fd5b455dace867;6be3c4cc48b12d321d73afc60fafa094 SAMEA3714274 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422450/ERR1422450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422450/ERR1422450_2.fastq.gz 1997010 WGS 4ad31500-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 44731704;44528263 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422450/ERR1422450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422450/ERR1422450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422450/19084_7#121.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422450/19084_7#121.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422450/ERR1422450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422450/ERR1422450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422450/19084_7#121.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422450/19084_7#121.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64308151;3393 ERS1021423 ERX1493032 GENOMIC 15738120 249626250 2016-05-24 SC_RUN_19084_7#121 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422450/19084_7#121.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422450/19084_7#121.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#121 ERR1202561 SC_EXP_17966_5#111 464 ca4b48157e09fc48f31f3c64613bad72;ef40123d8bee0192d3bc7aa2abbf535a 1313 9fff56dcdf59216642dd0dbfce88497e;26826b61721199e6aee3155b1dad3cc6 SAMEA3390047 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202561/ERR1202561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202561/ERR1202561_2.fastq.gz 2200332 WGS GPS_MW_C12797-sc-2296292 RANDOM 37964338;39431077 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202561/ERR1202561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202561/ERR1202561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202561/17966_5#111.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202561/17966_5#111.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202561/ERR1202561_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202561/ERR1202561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202561/17966_5#111.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202561/17966_5#111.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 54135006;3721 ERS726150 ERX1274803 GENOMIC 15024764 275041500 2016-01-12 SC_RUN_17966_5#111 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202561/17966_5#111.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202561/17966_5#111.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#111 ERR1422428 SC_EXP_19084_7#99 429 cfe9d8dc4e93e5fe60b901051baa0f2a;2802a393966a354e487845400fba74c6 1313 aba5d64cd79ec515f0e467f166c10982;3360b781c2088d24904079018969ebc8 SAMEA3714252 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422428/ERR1422428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422428/ERR1422428_2.fastq.gz 2840842 WGS 49f251f0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 64040460;63993060 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422428/ERR1422428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422428/ERR1422428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422428/19084_7#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422428/19084_7#99.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422428/ERR1422428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422428/ERR1422428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422428/19084_7#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422428/19084_7#99.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 92186220;4634 ERS1021401 ERX1493010 GENOMIC 15738141 355105250 2016-05-24 SC_RUN_19084_7#99 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422428/19084_7#99.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422428/19084_7#99.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#99 ERR1202322 SC_EXP_17870_8#62 447 63bc4d818bb4beb5773de6f243d3a295;5d214cac374c7fed321577de1039c0d9 1313 e588e86852bd8be04be6cc98d3de62d7;af584cbc1ee4592d4cfa327231f514a6 SAMEA3389759 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202322/ERR1202322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202322/ERR1202322_2.fastq.gz 2654580 WGS GPS_MW_D34981-sc-2296003 RANDOM 49898551;52736815 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202322/ERR1202322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202322/ERR1202322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202322/17870_8#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202322/17870_8#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202322/ERR1202322_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202322/ERR1202322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202322/17870_8#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202322/17870_8#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75798860;4427 ERS725862 ERX1274564 GENOMIC 14977739 331822500 2016-01-12 SC_RUN_17870_8#62 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202322/17870_8#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202322/17870_8#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#62 ERR1422520 SC_EXP_19084_8#7 444 9b2e72c064c7512e076dae3bf6f78d77;81c407170193b1df40b612ec5ccc93a8 1313 3a58b49f81bb589529e7dbeb7bd24be2;542f7b2358c0b803670df635a378f7d9 SAMEA3714344 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422520/ERR1422520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422520/ERR1422520_2.fastq.gz 2797736 WGS 4cf69140-41bd-11e5-998e-3c4a9275d6c6 RANDOM 65740775;66841652 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422520/ERR1422520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/000/ERR1422520/ERR1422520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422520/19084_8#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422520/19084_8#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422520/ERR1422520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/000/ERR1422520/ERR1422520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422520/19084_8#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422520/19084_8#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96825324;4639 ERS1021493 ERX1493102 GENOMIC 15758449 349717000 2016-05-24 SC_RUN_19084_8#7 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422520/19084_8#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422520/19084_8#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#7 ERR1192083 SC_EXP_17794_8#72 441 239fae1283078e0f31d486c880f2fdcb;11723d62222268b05c9e90922ba39076 1313 d00753cff466c2774769e6fb3573dead;609f228beda9e317dd021e375e05ca44 SAMEA3381608 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192083/ERR1192083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192083/ERR1192083_2.fastq.gz 2206092 WGS GPS_GM_2119-sc-2279488 RANDOM 42281772;43003992 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192083/ERR1192083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1192083/ERR1192083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192083/17794_8#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192083/17794_8#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192083/ERR1192083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1192083/ERR1192083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192083/17794_8#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192083/17794_8#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66676610;3768 ERS719867 ERX1265467 GENOMIC 14941623 275761500 2015-12-17 SC_RUN_17794_8#72 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192083/17794_8#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192083/17794_8#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#72 ERR701847 SC_EXP_14257_1#70 234 f27133a2489704f946865d31cea4f38a;c4497497e00aced1113a777f91ae3942 1313 21b27d31f56d7c707d727ba1479ef45a;d94aaeb3610241bd1decc720a4498d2b SAMEA2658474 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701847/ERR701847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701847/ERR701847_2.fastq.gz 4992158 WGS GPS_ZA_1447-sc-2021079 RANDOM 158634942;161423483 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701847/ERR701847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701847/ERR701847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701847/14257_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701847/14257_1#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701847/ERR701847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701847/ERR701847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701847/14257_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701847/14257_1#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262653112;8167 ERS508502 ERX646110 GENOMIC 11814774 499215800 2014-12-16 SC_RUN_14257_1#70 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701847/14257_1#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701847/14257_1#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#70 ERR980217 SC_EXP_16288_7#18 201 72ba3eb5c9e599fc93116be0326767e9;7682d1e7969bbc8ad3247c8036988f73 1313 5fd576ac0724292e1eeba29e0d8f4745;6b7d06696200c8b0e156441160df8d0b SAMEA3232693 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980217/ERR980217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980217/ERR980217_2.fastq.gz 5320378 WGS GPS_NP_0020-sc-2205612 RANDOM 177199833;172788710 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980217/ERR980217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980217/ERR980217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980217/16288_7#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980217/16288_7#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980217/ERR980217_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980217/ERR980217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980217/16288_7#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980217/16288_7#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 284728775;8583 ERS653904 ERX1057089 GENOMIC 13304017 532037800 2015-08-12 SC_RUN_16288_7#18 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980217/16288_7#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980217/16288_7#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#18 ERR1065680 SC_EXP_17150_4#41 458 589b3d74e8f22fb66b3b3148be841279;0ec3c038452126f8bc27e777d06601ba 1313 461f2c72df1b98e017e29bbe8bc23907;b050dfeb25af3b4e00d53d5c9ed5c249 SAMEA3353612 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065680/ERR1065680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065680/ERR1065680_2.fastq.gz 5504462 WGS GPS_ZA_carriage_SP1557-sc-2278214 RANDOM 107782749;104342082 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065680/ERR1065680_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065680/ERR1065680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065680/17150_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065680/17150_4#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065680/ERR1065680_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065680/ERR1065680_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065680/17150_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065680/17150_4#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 162015923;9078 ERS707967 ERX1145830 GENOMIC 14436399 688057750 2015-10-13 SC_RUN_17150_4#41 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065680/17150_4#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065680/17150_4#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#41 ERR600094 SC_EXP_13414_1#20 292 2cf81b94c0eb3ab58e899e8c8144693d;3232a6c6923fe8f5a144cee7fba0f255 1313 c431f41a7d91036f447cc335cad5e2b6;a84820f05c9238da05f683be0dba5e95 SAMEA2521470 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600094/ERR600094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600094/ERR600094_2.fastq.gz 5884372 WGS 2009218370-sc-1946767 RANDOM 201734561;207848398 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600094/ERR600094_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600094/ERR600094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600094/13414_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600094/13414_1#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600094/ERR600094_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600094/ERR600094_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600094/13414_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600094/13414_1#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 339529951;9584 ERS455010 ERX556923 GENOMIC 10524147 588437200 2014-09-16 SC_RUN_13414_1#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600094/13414_1#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600094/13414_1#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#20 ERR600280 SC_EXP_13414_3#90 223 3c15c4b4a737b879783590f533d4faff;9fb2bf5b5f156c45f74c052b1927c747 1313 c0f5019240d003a7900b23f771009ced;c071ef6551ec1aaf2e901b2e428f2883 SAMEA2521736 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600280/ERR600280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600280/ERR600280_2.fastq.gz 8182222 WGS 2012219136-sc-1947029 RANDOM 269930627;276946511 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600280/ERR600280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600280/ERR600280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600280/13414_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600280/13414_3#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600280/ERR600280_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600280/ERR600280_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600280/13414_3#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600280/13414_3#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 456884219;13151 ERS455276 ERX557109 GENOMIC 10600614 818222200 2014-09-16 SC_RUN_13414_3#90 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600280/13414_3#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600280/13414_3#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#90 ERR600277 SC_EXP_13414_3#84 223 7c9d5dd86d708437cbad19b98cfde6a1;0a90832d80a661e926e6ea63383fcc12 1313 f5014c3f12961fae3d0a1ec495ba9710;bab04318a8003183e6232779558ea321 SAMEA2521730 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600277/ERR600277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600277/ERR600277_2.fastq.gz 6841798 WGS 2012215804-sc-1947023 RANDOM 223799245;229818158 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600277/ERR600277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600277/ERR600277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600277/13414_3#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600277/13414_3#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600277/ERR600277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600277/ERR600277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600277/13414_3#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600277/13414_3#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 379131732;11050 ERS455270 ERX557106 GENOMIC 10600637 684179800 2014-09-16 SC_RUN_13414_3#84 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600277/13414_3#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600277/13414_3#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#84 ERR600267 SC_EXP_13414_3#64 223 74e308c8c38dcdf3e3b507dc198ea4d3;f46526b2356e33117a3739dbfbfe471c 1313 b4c22f7a32ad32613ace2686515cd842;e330299f8129eaf5ed50f03b7207d3e3 SAMEA2521710 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600267/ERR600267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600267/ERR600267_2.fastq.gz 9187838 WGS 2012213979-sc-1947003 RANDOM 304581355;307172638 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600267/ERR600267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600267/ERR600267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600267/13414_3#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600267/13414_3#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600267/ERR600267_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600267/ERR600267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600267/13414_3#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600267/13414_3#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 510318685;14418 ERS455250 ERX557096 GENOMIC 10600682 918783800 2014-09-16 SC_RUN_13414_3#64 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600267/13414_3#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600267/13414_3#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#64 ERR129043 SC_EXP_7622_2#19 219 e85b38438e61109139c6264a17a3440a 1313 b2bfa97ca4adaadc8774bbc75554f4d8;0e706d5ae43ec2acaf5fce5112df4957 SAMEA1463165 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129043/ERR129043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129043/ERR129043_2.fastq.gz 2922399 WGS BR1058-sc-2011-11-08T10:06:35Z-1298302 RANDOM 312494102;321643968 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129043/ERR129043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129043/ERR129043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129043/7622_2#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129043/ERR129043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129043/ERR129043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129043/7622_2#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 611800230 ERS069934 ERX105184 GENOMIC 4336452 584479800 2012-05-28 SC_RUN_7622_2#19 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129043/7622_2#19.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129052 SC_EXP_7622_2#28 219 f658802fa974292061eb54075a43bea9 1313 10ff571ea2adbd1c7c7d539b7d35d874;9337ec6583d4c93c0557d6cf8f6237fc SAMEA1463077 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129052/ERR129052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129052/ERR129052_2.fastq.gz 3213562 WGS BR1084-sc-2011-11-08T10:06:41Z-1298311 RANDOM 342781968;353088074 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129052/ERR129052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129052/ERR129052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129052/7622_2#28.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129052/ERR129052_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129052/ERR129052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129052/7622_2#28.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 668797361 ERS069943 ERX105193 GENOMIC 4336461 642712400 2012-05-28 SC_RUN_7622_2#28 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129052/7622_2#28.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129029 SC_EXP_7622_2#5 219 16d4db3d300f33804b0b961f5a1f55e7 1313 366e677bf1f8eb65a268018764a92c8f;45239444e14b4b8c9b4589e72b9ff436 SAMEA1463208 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129029/ERR129029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129029/ERR129029_2.fastq.gz 2787246 WGS BR1014-sc-2011-11-08T10:06:24Z-1298288 RANDOM 297289203;305859907 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129029/ERR129029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129029/ERR129029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129029/7622_2#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129029/ERR129029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129029/ERR129029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129029/7622_2#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 587135025 ERS069920 ERX105170 GENOMIC 4336438 557449200 2012-05-28 SC_RUN_7622_2#5 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129029/7622_2#5.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129192 SC_EXP_7622_5#72 225 c3c61d8898d53a02c424c0ca75e71a4c 1313 4023d1d8299e0844b7fe44bbd3b4932e;75520914ef2e7a0d8370b8e35b6a4dc5 SAMEA1463067 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129192/ERR129192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129192/ERR129192_2.fastq.gz 3124406 WGS ND6008_99p-sc-2011-11-08T10:08:25Z-1298451 RANDOM 333473160;344197393 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129192/ERR129192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129192/ERR129192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129192/7622_5#72.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129192/ERR129192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129192/ERR129192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129192/7622_5#72.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 658122808 ERS070083 ERX105333 GENOMIC 4336601 624881200 2012-05-28 SC_RUN_7622_5#72 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129192/7622_5#72.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124219 SC_EXP_7553_4#3 206 f55f50e731d6de1817470f6b6730c1f2 1313 c3c7e2b13f8c4e0f5dae227bfdf81537;df847b1f2ed69565f12069afd0c0e513 SAMEA1463104 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124219/ERR124219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124219/ERR124219_2.fastq.gz 5164058 WGS ND6115-sc-2011-11-08T10:08:44Z-1298478 RANDOM 546862026;546780649 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124219/ERR124219_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124219/ERR124219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124219/7553_4#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124219/ERR124219_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124219/ERR124219_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124219/7553_4#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1061963574 ERS070110 ERX100401 GENOMIC 4382927 1032811600 2012-05-09 SC_RUN_7553_4#3 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124219/7553_4#3.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR129171 SC_EXP_7622_5#51 225 3f3e953bfa77b51c85a8c2fa87199dcf 1313 026802d148f659971b7e148e36e015c8;1612ffb1ff349e43fc0b3449f822ad3e SAMEA1463146 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129171/ERR129171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129171/ERR129171_2.fastq.gz 2742843 WGS MD5035-sc-2011-11-08T10:08:08Z-1298430 RANDOM 291057990;299622287 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129171/ERR129171_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129171/ERR129171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129171/7622_5#51.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129171/ERR129171_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129171/ERR129171_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129171/7622_5#51.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 574051619 ERS070062 ERX105312 GENOMIC 4336580 548568600 2012-05-28 SC_RUN_7622_5#51 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129171/7622_5#51.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124227 SC_EXP_7553_4#11 206 bb6ee3d41d2810a8d57fde93ea291934 1313 20329e1e1ca215ddff7250bd2c349cac;67b18eba7ff992c16c962e9f922d982a SAMEA1462987 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124227/ERR124227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124227/ERR124227_2.fastq.gz 8222540 WGS ND6124-sc-2011-11-08T10:08:50Z-1298486 RANDOM 869200758;866423530 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124227/ERR124227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124227/ERR124227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124227/7553_4#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124227/ERR124227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124227/ERR124227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124227/7553_4#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1671306338 ERS070118 ERX100409 GENOMIC 4382935 1644508000 2012-05-09 SC_RUN_7553_4#11 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124227/7553_4#11.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR064215 SC_EXP_6949_4#5 261 fccd61ce99a45d123e432d5591c650fc 1313 12ea6a84b00cd8d5e3d99c4bb65d6e94;793f19308661e8c0520ea8c135ea2366 SAMEA1028999 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064215/ERR064215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064215/ERR064215_2.fastq.gz 4740441 WGS SMRU2477-sc-2011-01-27-1062690 RANDOM 244526313;248432932 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064215/ERR064215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064215/ERR064215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064215/6949_4#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064215/ERR064215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064215/ERR064215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064215/6949_4#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 636656646 ERS021987 ERX042188 GENOMIC 3660766 711066150 2012-03-19 SC_RUN_6949_4#5 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064215/6949_4#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048132 SC_EXP_6631_4#23 234 3ce8cae3c2397d475ed3b8e190718eb8 1313 3499a131dddb4557e1126b71bcb528bb;179da179c8facb698147ac79ce85a010 SAMEA1023971 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048132/ERR048132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048132/ERR048132_2.fastq.gz 3385329 WGS SMRU455-sc-2011-01-27-1060644 RANDOM 192276084;180619276 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048132/ERR048132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048132/ERR048132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048132/6631_4#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048132/ERR048132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048132/ERR048132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048132/6631_4#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 478201575 ERS019613 ERX025195 GENOMIC 2952242 507799350 2011-10-11 SC_RUN_6631_4#23 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048132/6631_4#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054409 SC_EXP_6736_8#20 242 98510c51cf5f2591c434ef9f6931ddb8 1313 dcdb341a4c58ec223ecb677c798333fb;0599657f6e6e13b4440fde88f3c11098 SAMEA1025358 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054409/ERR054409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054409/ERR054409_2.fastq.gz 8356068 WGS SMRU1316-sc-2011-01-27-1061529 RANDOM 450204469;480012788 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054409/ERR054409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054409/ERR054409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054409/6736_8#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054409/ERR054409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054409/ERR054409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054409/6736_8#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1168825157 ERS020826 ERX031455 GENOMIC 3308163 1253410200 2011-11-15 SC_RUN_6736_8#20 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054409/6736_8#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054382 SC_EXP_6736_7#17 243 fd43d09ba61b77fe8b3b83039a5c322c 1313 db8810a5746f55a5c891190f710b306d;e1d79f27caabb5383316915a7cbf5663 SAMEA1025450 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054382/ERR054382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054382/ERR054382_2.fastq.gz 6912622 WGS SMRU1289-sc-2011-01-27-1061502 RANDOM 374662880;396490715 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054382/ERR054382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054382/ERR054382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054382/6736_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054382/ERR054382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054382/ERR054382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054382/6736_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 962717259 ERS020799 ERX031428 GENOMIC 3308136 1036893300 2011-11-15 SC_RUN_6736_7#17 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054382/6736_7#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054361 SC_EXP_6736_6#20 247 9328ee3fffac5f57a875b42c9fa2a8e9 1313 08c6608a66cdd4cfe9727746cf281c10;338c1e7a647173a53fa74f59854b7e64 SAMEA1025601 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054361/ERR054361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054361/ERR054361_2.fastq.gz 5388963 WGS SMRU1268-sc-2011-01-27-1061481 RANDOM 275427360;291933013 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054361/ERR054361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054361/ERR054361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054361/6736_6#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054361/ERR054361_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054361/ERR054361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054361/6736_6#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 719208954 ERS020778 ERX031407 GENOMIC 3308115 808344450 2011-11-15 SC_RUN_6736_6#20 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054361/6736_6#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054575 SC_EXP_6755_3#19 217 3d67cb25e960ea79c6fb95d4d72d7ed5 1313 6276e27591e75e7d83fb1abd1475ea3f;5accefd3abee8c99639c1871e6ca8818 SAMEA1024917 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054575/ERR054575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054575/ERR054575_2.fastq.gz 3851188 WGS SMRU883-sc-2011-01-27-1061096 RANDOM 187724690;192808630 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054575/ERR054575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054575/ERR054575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054575/6755_3#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054575/ERR054575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054575/ERR054575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054575/6755_3#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 491436820 ERS020393 ERX031621 GENOMIC 3152404 577678200 2011-11-15 SC_RUN_6755_3#19 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054575/6755_3#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051588 SC_EXP_6731_3#10 214 b76550ae34c54699250bc0fc128b4e4f 1313 255ed3a4cbaefd1a3dcc23126bbf127b;21f604fb820f806f82a31bf3b8326bb4 SAMEA1024828 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051588/ERR051588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051588/ERR051588_2.fastq.gz 3640482 WGS SMRU1042-sc-2011-01-27-1061255 RANDOM 204184091;213329628 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051588/ERR051588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051588/ERR051588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051588/6731_3#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051588/ERR051588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051588/ERR051588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051588/6731_3#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 533521737 ERS020552 ERX028636 GENOMIC 3246242 546072300 2011-11-02 SC_RUN_6731_3#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051588/6731_3#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR067951 SC_EXP_7004_8#88 223 f547bf05fd56a0f1eba083aeae987ccc 1313 3505d16fcbdebfc69af455b157a2dca9;54b5b83074bd720fc3e181312cac06b1 SAMEA1029303 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067951/ERR067951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067951/ERR067951_2.fastq.gz 3823617 WGS SMRU2920-sc-2011-01-27-1063133 RANDOM 244607548;238481357 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067951/ERR067951_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067951/ERR067951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067951/7004_8#88.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067951/ERR067951_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067951/ERR067951_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067951/7004_8#88.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 608356159 ERS022430 ERX045814 GENOMIC 3740275 573542550 2012-03-19 SC_RUN_7004_8#88 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067951/7004_8#88.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067899 SC_EXP_7004_6#36 224 8e01bc1d66f4c3bbcf2a4d4657c56d94 1313 c151cbfc2a12f07e4e663bc2853b9b80;614c66839a029299b4bdb2df00e52cbb SAMEA1029172 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067899/ERR067899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067899/ERR067899_2.fastq.gz 6919513 WGS SMRU2844-sc-2011-01-27-1063057 RANDOM 442672605;426757354 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067899/ERR067899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067899/ERR067899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067899/7004_6#36.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067899/ERR067899_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067899/ERR067899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067899/7004_6#36.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1084511734 ERS022354 ERX045762 GENOMIC 3740223 1037926950 2012-01-16 SC_RUN_7004_6#36 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067899/7004_6#36.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067898 SC_EXP_7004_6#35 224 ac63843af76bd61ab5e16b2113067950 1313 864593c556f2342ac629de131e6b0973;f1fa3741cd75f3bb534fed8a6cbf1140 SAMEA1029052 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067898/ERR067898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067898/ERR067898_2.fastq.gz 6741433 WGS SMRU2843-sc-2011-01-27-1063056 RANDOM 426033460;410182617 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067898/ERR067898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067898/ERR067898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067898/7004_6#35.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067898/ERR067898_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067898/ERR067898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067898/7004_6#35.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1057446053 ERS022353 ERX045761 GENOMIC 3740222 1011214950 2012-01-16 SC_RUN_7004_6#35 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067898/7004_6#35.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067832 SC_EXP_6972_4#17 234 849e21b30687b7512a98d13977b267c6 1313 b9098212c80fb5cff575ed9e28174927;541a2ed73348478dbf29600c2708bb2f SAMEA1028958 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067832/ERR067832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067832/ERR067832_2.fastq.gz 4501157 WGS SMRU2609-sc-2011-01-27-1062822 RANDOM 283817257;290970955 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067832/ERR067832_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067832/ERR067832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067832/6972_4#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067832/ERR067832_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067832/ERR067832_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067832/6972_4#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 729450117 ERS022119 ERX045695 GENOMIC 3686284 675173550 2012-01-16 SC_RUN_6972_4#17 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067832/6972_4#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR066354 SC_EXP_6983_8#83 237 25c0f331bae2414f3acf3ea5b453693e 1313 999d432be48baa655502962ef2b622c7;e6e564bdbf79e9af4eab83c1ce007c7a SAMEA1028875 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066354/ERR066354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066354/ERR066354_2.fastq.gz 3582207 WGS SMRU2387-sc-2011-01-27-1062600 RANDOM 253233310;255920659 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066354/ERR066354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066354/ERR066354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066354/6983_8#83.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066354/ERR066354_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066354/ERR066354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066354/6983_8#83.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 638219040 ERS021896 ERX044217 GENOMIC 3596165 537331050 2012-03-19 SC_RUN_6983_8#83 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066354/6983_8#83.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066353 SC_EXP_6983_8#82 237 f5486df082092a012b22d19a6b168695 1313 1ae3fd504f4290f32a7852253195dfcb;f1c54a37b1a9458496891802d57a36f1 SAMEA1028887 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066353/ERR066353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066353/ERR066353_2.fastq.gz 4723183 WGS SMRU2386-sc-2011-01-27-1062599 RANDOM 327117877;330013250 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066353/ERR066353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066353/ERR066353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066353/6983_8#82.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066353/ERR066353_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066353/ERR066353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066353/6983_8#82.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 831418684 ERS021895 ERX044216 GENOMIC 3596164 708477450 2012-03-19 SC_RUN_6983_8#82 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066353/6983_8#82.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR084291 SC_EXP_7068_4#17 228 52a1504c8a51a030be7d02e5c65dad6f 1313 97aa0a749fe60ca6c90cb2c0b5a6f9e7;649698a402229cca9faa45e83d1ff846 SAMEA1029234 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084291/ERR084291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084291/ERR084291_2.fastq.gz 4235888 WGS SMRU3137-sc-2011-01-27-1063350 RANDOM 270122461;271906999 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084291/ERR084291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084291/ERR084291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084291/7068_4#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084291/ERR084291_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084291/ERR084291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084291/7068_4#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 689820738 ERS022647 ERX062057 GENOMIC 3910172 635383200 2012-02-07 SC_RUN_7068_4#17 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084291/7068_4#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR045371 SC_EXP_6486_5#22 228 044f02ee0380aab587e05445a819d55c 1313 892c0fdba4f8cc9d139af72aa50ac3de;4042410463e00cecefcd284bed97991b SAMEA1026771 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045371/ERR045371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045371/ERR045371_2.fastq.gz 8602772 WGS UoS4342-sc-2011-02-14-1078460 RANDOM 459523033;468000378 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045371/ERR045371_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045371/ERR045371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045371/6486_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045371/ERR045371_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045371/ERR045371_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045371/6486_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1173986932 ERS023406 ERX022433 GENOMIC 2744975 1290415800 2011-09-14 SC_RUN_6486_5#22 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045371/6486_5#22.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_5#22 ERR039628 SC_EXP_6259_7#21 201 45c37e9f364b68dbfa3acb3b2b1d32ba 1313 5f3eaec6dbb8ae118b56cb2cb4ad2ef5;a6edffa2eb873c1776ef3604f86a2e69 SAMEA974627 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039628/ERR039628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039628/ERR039628_2.fastq.gz 4890251 WGS SMRU69-sc-2011-01-27-1026494 RANDOM 239029238;251768153 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039628/ERR039628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039628/ERR039628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039628/6259_7#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039628/ERR039628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039628/ERR039628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039628/6259_7#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 631234565 ERS019227 ERX016801 GENOMIC 2590973 733537650 2011-07-27 SC_RUN_6259_7#21 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039628/6259_7#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR039627 SC_EXP_6259_7#20 201 c40772d762744193b2814a6e02f648a9 1313 439d2e749b01bb3559a2e7015e3421f9;59fb26972c6dc50f7d7b403bb1372193 SAMEA974646 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039627/ERR039627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039627/ERR039627_2.fastq.gz 4910037 WGS SMRU68-sc-2011-01-27-1026493 RANDOM 246323937;259974806 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039627/ERR039627_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039627/ERR039627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039627/6259_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039627/ERR039627_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039627/ERR039627_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039627/6259_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 650889233 ERS019226 ERX016800 GENOMIC 2590972 736505550 2011-07-27 SC_RUN_6259_7#20 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039627/6259_7#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR1065840 SC_EXP_17150_6#14 464 6bbd7f7503adac481de9845fc84d2cbf;8e331bf20bf1731a84ee699953f06261 1313 a996fe1ac2c716e7d8f974cff9307bc4;829648a39612fdb424c84d058863c1fc SAMEA3354109 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065840/ERR1065840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065840/ERR1065840_2.fastq.gz 4797896 WGS GPS_ZA_2988-sc-2278715 RANDOM 93758963;86376454 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065840/ERR1065840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065840/ERR1065840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065840/17150_6#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065840/17150_6#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065840/ERR1065840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065840/ERR1065840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065840/17150_6#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065840/17150_6#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 136780791;7927 ERS708464 ERX1145990 GENOMIC 14438217 599737000 2015-10-13 SC_RUN_17150_6#14 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065840/17150_6#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065840/17150_6#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#14 ERR1065150 SC_EXP_17059_6#39 444 6bf3e2f4d094210229cd722a7775d78b;41b31d7be92901aaf556138f055dd654 1313 7797b9456d8a26de507c045e07d1ef03;7bb96d2968fc48838b2196a6423703b1 SAMEA3353237 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065150/ERR1065150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065150/ERR1065150_2.fastq.gz 5636218 WGS GPS_ZA_carriage_SP1179-sc-2277835 RANDOM 104162154;106087872 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065150/ERR1065150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065150/ERR1065150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065150/17059_6#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065150/17059_6#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065150/ERR1065150_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065150/ERR1065150_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065150/17059_6#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065150/17059_6#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 172532126;9296 ERS707592 ERX1145300 GENOMIC 14397969 704527250 2015-10-13 SC_RUN_17059_6#39 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065150/17059_6#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065150/17059_6#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#39 ERR997581 SC_EXP_16399_6#40 220 a045b3e4166202c0b9c58df6d15c3a91;2af37b4e0ccf84e81a8785d85859b337 1313 b12a302134be1ced0bbdac1f2a7eaa09;ad40a6198a18b8e80d2e175ee1a636b1 SAMEA3309619 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997581/ERR997581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997581/ERR997581_2.fastq.gz 5674486 WGS GPS_GM_1638-sc-2206422 RANDOM 191430841;197679918 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997581/ERR997581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997581/ERR997581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997581/16399_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997581/16399_6#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997581/ERR997581_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997581/ERR997581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997581/16399_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997581/16399_6#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 319554973;9079 ERS686081 ERX1076617 GENOMIC 13835453 567448600 2015-09-04 SC_RUN_16399_6#40 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997581/16399_6#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997581/16399_6#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#40 ERR980204 SC_EXP_16288_7#3 201 ddba26c95d411c2b12f51265782fbaee;18dbe66141d538e6c1be257fd4cad9a4 1313 e5fa388f07703ed64417e760238dfc8d;b5e6899f71deec9e352ea31f67ff59f3 SAMEA3232678 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980204/ERR980204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980204/ERR980204_2.fastq.gz 5302190 WGS GPS_NP_1139-sc-2205597 RANDOM 185517892;183632952 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980204/ERR980204_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980204/ERR980204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980204/16288_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980204/16288_7#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980204/ERR980204_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980204/ERR980204_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980204/16288_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980204/16288_7#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300765497;8115 ERS653889 ERX1057076 GENOMIC 13304027 530219000 2015-08-12 SC_RUN_16288_7#3 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980204/16288_7#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980204/16288_7#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#3 ERR925181 SC_EXP_15995_1#158 231 8e0f767e3127e6f005c71c53fbdc9400;f299433c4c6b0cdf5862fdd01b04d7b9 1313 6a8c18c7d9192407cfbe8d623f3bcf00;ceb6b9af16aba3acb708b1473d21dab3 SAMEA3208898 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925181/ERR925181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925181/ERR925181_2.fastq.gz 1497756 WGS GPS_ZA_carriage_SP923-sc-2205034 RANDOM 46027715;48524123 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925181/ERR925181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925181/ERR925181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925181/15995_1#158.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925181/15995_1#158.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925181/ERR925181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925181/ERR925181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925181/15995_1#158.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925181/15995_1#158.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76775226;2566 ERS640000 ERX1004456 GENOMIC 13241132 149775600 2015-06-23 SC_RUN_15995_1#158 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925181/15995_1#158.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925181/15995_1#158.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#158 ERR913162 SC_EXP_15873_2#10 205 6f45249d51ad9817c36be85d51ea5aa8;01f70c37d0cb53cd1241417cef0a1c1a 1313 02846742dfabfb93f67dccf425047f0f;a0b37df3fa82a4218221d3a4fe1d4f42 SAMEA3233096 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913162/ERR913162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913162/ERR913162_2.fastq.gz 5623788 WGS GPS_GM_1240-sc-2205852 RANDOM 182895061;191216489 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913162/ERR913162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913162/ERR913162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913162/15873_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913162/15873_2#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913162/ERR913162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913162/ERR913162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913162/15873_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913162/15873_2#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305382904;8999 ERS654289 ERX992286 GENOMIC 13301861 562378800 2015-06-17 SC_RUN_15873_2#10 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913162/15873_2#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913162/15873_2#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#10 ERR913188 SC_EXP_15873_2#36 205 9c5a303c9281606973ca194de6e16766;f3fd8e5f25b6293faa6ca2ca56ad7203 1313 7fe136cb20f737d6522d62cccd96df70;bba2ebfcc7753eb7a88df2a86c4e4ae9 SAMEA3233126 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913188/ERR913188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913188/ERR913188_2.fastq.gz 5797204 WGS GPS_GM_1270-sc-2205882 RANDOM 188230515;196817732 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913188/ERR913188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913188/ERR913188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913188/15873_2#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913188/15873_2#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913188/ERR913188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913188/ERR913188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913188/15873_2#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913188/15873_2#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313569854;9330 ERS654319 ERX992312 GENOMIC 13301888 579720400 2015-06-17 SC_RUN_15873_2#36 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913188/15873_2#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913188/15873_2#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#36 ERR913176 SC_EXP_15873_2#24 205 11e3ce00950c594b9ab3083cc3fd5779;8d6866ae7f4332841370001ec82d6b61 1313 9ef4baf2ed0cf684154d896f96d4c06e;fb13c8005ceb0e9a6e73154a3b70c404 SAMEA3233113 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913176/ERR913176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913176/ERR913176_2.fastq.gz 6145674 WGS GPS_GM_1257-sc-2205869 RANDOM 199407787;208511796 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913176/ERR913176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913176/ERR913176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913176/15873_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913176/15873_2#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913176/ERR913176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913176/ERR913176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913176/15873_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913176/15873_2#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 334237245;9894 ERS654306 ERX992300 GENOMIC 13301934 614567400 2015-06-17 SC_RUN_15873_2#24 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913176/15873_2#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913176/15873_2#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#24 ERR913316 SC_EXP_15873_4#1 216 55f096fc9fedfa120b28e272d8e02973;448b3c46751d66d7bfdcc6e3eebff693 1313 f602b4dbbbfe663f9f3299cad85b7b27;be8289ea0950fce8ebf27390e364a270 SAMEA3233281 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913316/ERR913316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913316/ERR913316_2.fastq.gz 6948906 WGS GPS_GM_1405-sc-2206038 RANDOM 210578858;217171248 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913316/ERR913316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913316/ERR913316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913316/15873_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913316/15873_4#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913316/ERR913316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913316/ERR913316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913316/15873_4#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913316/15873_4#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 347942279;11089 ERS654474 ERX992440 GENOMIC 13308238 694890600 2015-06-17 SC_RUN_15873_4#1 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913316/15873_4#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913316/15873_4#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_4#1 ERR913315 SC_EXP_15873_3#81 216 f78946f0d596eef4ee91a3c1195de855;81714dca0a7af76a5efb455890e9aad7 1313 15c6559fb12fa3396910e9a266c061c8;7c90295482ec8f3c4ffaf29c12b06db5 SAMEA3233280 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913315/ERR913315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913315/ERR913315_2.fastq.gz 6265156 WGS GPS_GM_1404-sc-2206037 RANDOM 194255882;201930441 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913315/ERR913315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913315/ERR913315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913315/15873_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913315/15873_3#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913315/ERR913315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913315/ERR913315_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913315/15873_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913315/15873_3#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322054809;10028 ERS654473 ERX992439 GENOMIC 13308150 626515600 2015-06-17 SC_RUN_15873_3#81 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913315/15873_3#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913315/15873_3#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#81 ERR913298 SC_EXP_15873_3#64 216 3c13832e9272b44e0f617cc30048c468;34c7c92deaaa79f918d4930fbd4711e3 1313 8b4050501394ac4b9694ed7881ad8c2e;fe5d8bf3af9c766d08870433b43880b3 SAMEA3233259 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913298/ERR913298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913298/ERR913298_2.fastq.gz 5674894 WGS GPS_GM_1383-sc-2206015 RANDOM 177874160;184664155 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913298/ERR913298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913298/ERR913298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913298/15873_3#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913298/15873_3#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913298/ERR913298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913298/ERR913298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913298/15873_3#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913298/15873_3#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294272202;9145 ERS654452 ERX992422 GENOMIC 13308231 567489400 2015-06-17 SC_RUN_15873_3#64 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913298/15873_3#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913298/15873_3#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#64 ERR908919 SC_EXP_15841_1#70 206 967d5f7bb1884982c765df169f078574;f2e016087ae958fe67ee9cc673013fb4 1313 ad72b84c1a0b4b74e28cf0a1e2c76702;c022d14eb2a1c00f3f3c7e5db6540822 SAMEA3206853 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908919/ERR908919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908919/ERR908919_2.fastq.gz 4524326 WGS GPS_ZA_carriage_SP259-sc-2191787 RANDOM 142241485;145775779 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908919/ERR908919_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908919/ERR908919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908919/15841_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908919/15841_1#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908919/ERR908919_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908919/ERR908919_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908919/15841_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908919/15841_1#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 231587174;7292 ERS638863 ERX988174 GENOMIC 13227505 452432600 2015-06-09 SC_RUN_15841_1#70 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908919/15841_1#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908919/15841_1#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#70 ERR909189 SC_EXP_15841_4#55 228 912af4d53a145aa5ff16c9d1a367b8f2;2eab647a83d324606021229788bdb029 1313 5da35fb260dece4af6b592c3d32b9ab1;7a80c54faf0cf89de76414c804dc46c9 SAMEA3208796 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909189/ERR909189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909189/ERR909189_2.fastq.gz 4869542 WGS GPS_ZA_carriage_SP839-sc-2204931 RANDOM 153965505;159862790 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909189/ERR909189_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909189/ERR909189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909189/15841_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909189/15841_4#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909189/ERR909189_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909189/ERR909189_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909189/15841_4#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909189/15841_4#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253588733;7808 ERS639898 ERX988444 GENOMIC 13267983 486954200 2015-06-09 SC_RUN_15841_4#55 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909189/15841_4#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909189/15841_4#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#55 ERR742386 SC_EXP_14673_1#61 214 4c2dd1d6897a3d3a9132264705eaa52d;78ce4ebf9a9006dae65175a0241ec397 1313 f4208ea000ff1d116b8deade4f7018f7;420611aae19f2ac8b00db6096c76b331 SAMEA2796469 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742386/ERR742386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742386/ERR742386_2.fastq.gz 4930518 WGS GPS_US_7574_07-sc-2138448 RANDOM 158563511;165144410 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742386/ERR742386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742386/ERR742386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742386/14673_1#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742386/14673_1#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742386/ERR742386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742386/ERR742386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742386/14673_1#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742386/14673_1#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262928125;7869 ERS558080 ERX686069 GENOMIC 12061733 493051800 2015-01-27 SC_RUN_14673_1#61 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742386/14673_1#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742386/14673_1#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#61 ERR742612 SC_EXP_14673_4#16 209 a47aae1c3e90645e6b5a0914108ecefe;b901c7d24e8271c2f69caaa77ef57bdf 1313 246439f222f6b99993cb75f8054efc59;94fc90399e00639a7af983538e2d8e51 SAMEA2796709 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742612/ERR742612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742612/ERR742612_2.fastq.gz 6130814 WGS GPS_US_2009216705_R1-sc-2138693 RANDOM 198297997;202119793 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742612/ERR742612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742612/ERR742612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742612/14673_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742612/14673_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742612/ERR742612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742612/ERR742612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742612/14673_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742612/14673_4#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326859044;9743 ERS558320 ERX686295 GENOMIC 12062054 613081400 2015-01-27 SC_RUN_14673_4#16 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742612/14673_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742612/14673_4#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#16 ERR742625 SC_EXP_14673_4#29 209 cb7376f751bbc3a4ae7d13fbb0aabeec;1978698173880be7e1a5b5da5c9be5f8 1313 9a2e8b309d1eb1b455cf36efeb029d92;ad3cafc7016010566b710c8943675108 SAMEA2796722 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742625/ERR742625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742625/ERR742625_2.fastq.gz 4805836 WGS GPS_US_2009208544_R1-sc-2138706 RANDOM 157325444;162686984 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742625/ERR742625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742625/ERR742625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742625/14673_4#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742625/14673_4#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742625/ERR742625_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742625/ERR742625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742625/14673_4#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742625/14673_4#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259091927;7624 ERS558333 ERX686308 GENOMIC 12062020 480583600 2015-01-27 SC_RUN_14673_4#29 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742625/14673_4#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742625/14673_4#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#29 ERR742636 SC_EXP_14673_4#40 209 e4a243e08beb8df08419930a07f2a5da;0080da3df98a90485282da06e970dad4 1313 ff971878d0b0324dcaeb98b2af025c7f;ecabe0bc526c7283a596e51c71ee6063 SAMEA2796733 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742636/ERR742636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742636/ERR742636_2.fastq.gz 5483750 WGS GPS_US_2009212860_R1-sc-2138717 RANDOM 175488189;179707593 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742636/ERR742636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742636/ERR742636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742636/14673_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742636/14673_4#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742636/ERR742636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742636/ERR742636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742636/14673_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742636/14673_4#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 288886044;8857 ERS558344 ERX686319 GENOMIC 12062057 548375000 2015-01-27 SC_RUN_14673_4#40 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742636/14673_4#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742636/14673_4#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#40 ERR845753 SC_EXP_15277_1#20 250 44943e58f7b18b02856352051411d89e;024cdb456ad649582c45f43f0e023ff1 1313 ad2c7487db7e439c8baddc300caf1dec;4e088efe7ab155dade7fed5aba8fd364 SAMEA2796581 2015-04-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845753/ERR845753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845753/ERR845753_2.fastq.gz 12794674 WGS GPS_US_8574_06-sc-2138561 RANDOM 407389598;423155586 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845753/ERR845753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845753/ERR845753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845753/15277_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845753/15277_1#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845753/ERR845753_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845753/ERR845753_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845753/15277_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845753/15277_1#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 686256760;19806 ERS558192 ERX926664 GENOMIC 12591411 1279467400 2015-04-08 SC_RUN_15277_1#20 fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845753/15277_1#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845753/15277_1#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA428759 15277_1#20 ERR730862 SC_EXP_14566_6#7 237 ac5079bf05911dbcc42738e90584457f;03262983770260d505f33c8742641f9e 1313 73194d0b63c957604d74f361b88ef8b0;a33b3094714a77a932a21bd1f82866d5 SAMEA2658905 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730862/ERR730862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730862/ERR730862_2.fastq.gz 5028774 WGS GPS_ZA_1954-sc-2021542 RANDOM 151660576;156749413 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730862/ERR730862_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730862/ERR730862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730862/14566_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730862/14566_6#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730862/ERR730862_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730862/ERR730862_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730862/14566_6#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730862/14566_6#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251542455;8195 ERS508933 ERX674808 GENOMIC 11887172 502877400 2015-01-14 SC_RUN_14566_6#7 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730862/14566_6#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730862/14566_6#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#7 ERR633092 SC_EXP_13415_8#70 232 2b60774f99feb8b7ba6d483653043780;eaeee0277e8ce65fc89ff3e69ed5f93b 1313 85ce6e4a4ad802d350a8e226a9d9e64e;3d34803e13425ec71d085f357b89665d SAMEA2554277 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633092/ERR633092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633092/ERR633092_2.fastq.gz 4793004 WGS GPS_ZA_1166-sc-1951315 RANDOM 159672501;164706480 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633092/ERR633092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633092/ERR633092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633092/13415_8#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633092/13415_8#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633092/ERR633092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633092/ERR633092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633092/13415_8#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633092/13415_8#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267561478;7859 ERS464778 ERX589646 GENOMIC 10663374 479300400 2014-09-23 SC_RUN_13415_8#70 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633092/13415_8#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633092/13415_8#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#70 ERR600114 SC_EXP_13414_1#48 292 3bc22f27c6178b0abebe4a6af81252ab;824d5dc2152804b41d15c8dfb00bb170 1313 d26945ebb8e8ccf9ac2b789eb1bc0c49;8b36b0472a12f32e6bb4a2e1ce26dda2 SAMEA2521501 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600114/ERR600114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600114/ERR600114_2.fastq.gz 6324272 WGS 2013205806-sc-1946795 RANDOM 215007768;221397956 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600114/ERR600114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600114/ERR600114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600114/13414_1#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600114/13414_1#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600114/ERR600114_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600114/ERR600114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600114/13414_1#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600114/13414_1#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 362637567;10362 ERS455041 ERX556943 GENOMIC 10524198 632427200 2014-09-16 SC_RUN_13414_1#48 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600114/13414_1#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600114/13414_1#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#48 ERR730341 SC_EXP_14520_6#13 215 9ffccad19c736139be37aed8acd4421b;b0f74e7acb493c2c82a131fe2d11eadc 1313 b3010d5d4b010e35187e50230bc7bcf7;4f15039187ad1d23917a02d9bc647e78 SAMEA2696426 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730341/ERR730341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730341/ERR730341_2.fastq.gz 5512372 WGS GPS_GM_0721-sc-2021881 RANDOM 207158869;211168475 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730341/ERR730341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730341/ERR730341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730341/14520_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730341/14520_6#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730341/ERR730341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730341/ERR730341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730341/14520_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730341/14520_6#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 345238440;8799 ERS525005 ERX674287 GENOMIC 11983336 551237200 2015-01-14 SC_RUN_14520_6#13 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730341/14520_6#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730341/14520_6#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#13 ERR632959 SC_EXP_13414_8#92 241 82691da8ef4b2f6c315eb7f764ed6639;74a27e9b0ae6245d54d6867d346078b0 1313 f4b9ad46b91cb6f3706ba57949bcc691;2b64a6024071f8d6919a85d2f6dceeb9 SAMEA2553773 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632959/ERR632959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632959/ERR632959_2.fastq.gz 3896314 WGS GPS_ZA_709-sc-1950853 RANDOM 126894689;129799763 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632959/ERR632959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632959/ERR632959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632959/13414_8#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632959/13414_8#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632959/ERR632959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632959/ERR632959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632959/13414_8#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632959/13414_8#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 211587796;6430 ERS464274 ERX589513 GENOMIC 10631128 389631400 2014-09-23 SC_RUN_13414_8#92 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632959/13414_8#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632959/13414_8#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#92 ERR600086 SC_EXP_13414_1#9 292 92c6e02b121cb0fbb676601ea05b7efe;b677589a9b2f5f3090070adda03b6cbc 1313 49d894128f8824b620fc6e869c7d999c;3e408d1478618b8de9eda9186507f6cd SAMEA2521459 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600086/ERR600086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600086/ERR600086_2.fastq.gz 5773482 WGS 2009218244-sc-1946756 RANDOM 195761248;201224791 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600086/ERR600086_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600086/ERR600086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600086/13414_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600086/13414_1#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600086/ERR600086_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600086/ERR600086_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600086/13414_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600086/13414_1#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 330660028;9463 ERS454999 ERX556915 GENOMIC 10524110 577348200 2014-09-16 SC_RUN_13414_1#9 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600086/13414_1#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600086/13414_1#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#9 ERR600111 SC_EXP_13414_1#42 292 b6ef84984739e21d54d1e6cc9d95cbf7;97bd1d78891a3f5e6599923c61c7ce8f 1313 dd7e90f9cd9584b18402d9f36fd35d47;fe8d586c4c6ef8cdc85f722b27243fe2 SAMEA2521495 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600111/ERR600111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600111/ERR600111_2.fastq.gz 6241484 WGS 2010205244-sc-1946789 RANDOM 214907826;222192478 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600111/ERR600111_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600111/ERR600111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600111/13414_1#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600111/13414_1#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600111/ERR600111_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600111/ERR600111_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600111/13414_1#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600111/13414_1#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 362428788;10111 ERS455035 ERX556940 GENOMIC 10524126 624148400 2014-09-16 SC_RUN_13414_1#42 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600111/13414_1#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600111/13414_1#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#42 ERR600252 SC_EXP_13414_3#35 223 e2aa327f7a92be12bad2cf2984c7a384;2edae881dc16ea754c1de9e1aacd37dd 1313 30209bc4691c67e219d3e52a1bb95c6e;f41d41e12a34d10ac0802c12cdfabc3a SAMEA2521681 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600252/ERR600252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600252/ERR600252_2.fastq.gz 6694024 WGS 2013208721-sc-1946974 RANDOM 221113936;228051918 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600252/ERR600252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600252/ERR600252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600252/13414_3#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600252/13414_3#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600252/ERR600252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600252/ERR600252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600252/13414_3#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600252/13414_3#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 371240171;10829 ERS455221 ERX557081 GENOMIC 10600619 669402400 2014-09-16 SC_RUN_13414_3#35 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600252/13414_3#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600252/13414_3#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#35 ERR600565 SC_EXP_13415_6#66 231 52b22ebe9f7b2145343294d4e0f5d966;ba3a1c9856f3be68fa6ad68b992ba3db 1313 eea47dee780f2fc26085b9cf62e7ef9e;9f5ccacdebb837ea684d3ddc214c7203 SAMEA2554081 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600565/ERR600565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600565/ERR600565_2.fastq.gz 4828978 WGS GPS_ZA_970-sc-1951117 RANDOM 160179306;164345896 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600565/ERR600565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600565/ERR600565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600565/13415_6#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600565/13415_6#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600565/ERR600565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600565/ERR600565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600565/13415_6#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600565/13415_6#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267094123;7955 ERS464582 ERX557394 GENOMIC 10631295 482897800 2014-09-16 SC_RUN_13415_6#66 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600565/13415_6#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600565/13415_6#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#66 ERR600232 SC_EXP_13414_3#10 223 a6f9e5e474e95b455bb2e30bb465fda9;bbb20901c06f870a3d879bf85dd02545 1313 ef75b7aa0bcf6af8327ff2870d6e176e;a41e89f7ae7f520cc4971b47ab74c75c SAMEA2521656 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600232/ERR600232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600232/ERR600232_2.fastq.gz 7064654 WGS 2012219977-sc-1946949 RANDOM 228813451;234876269 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600232/ERR600232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600232/ERR600232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600232/13414_3#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600232/13414_3#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600232/ERR600232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600232/ERR600232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600232/13414_3#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600232/13414_3#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 385822460;11432 ERS455196 ERX557061 GENOMIC 10600604 706465400 2014-09-16 SC_RUN_13414_3#10 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600232/13414_3#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600232/13414_3#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#10 ERR586335 SC_EXP_13154_2#38 246 221abbe139529429184777f3d4acc382;b8b10e72561311055149306a8a46e413 1313 b1aded7c053bae1f1ba49671168e08e7;0ee4a3d61f85947ca798e7a2d527c7e9 SAMEA2467280 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586335/ERR586335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586335/ERR586335_2.fastq.gz 5051020 WGS PATH2923-sc-1926063 RANDOM 161392393;167241374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586335/ERR586335_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586335/ERR586335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586335/13154_2#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586335/13154_2#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586335/ERR586335_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586335/ERR586335_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586335/13154_2#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586335/13154_2#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267769570;7999 ERS437037 ERX544343 GENOMIC 10222468 505102000 2014-08-27 SC_RUN_13154_2#38 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586335/13154_2#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586335/13154_2#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_2#38 ERR577984 SC_EXP_13091_6#41 242 e557746713d559243c65186cb73f8f13;5989bbfa75fcc5bc5f0b3d7cc3c4dc17 1313 ba84d865a8449b2546ef6183eaaf32c2;dc0d380aeb659cca1876213d8c14548f SAMEA2467491 2014-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577984/ERR577984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577984/ERR577984_2.fastq.gz 4477402 WGS PATH3544-sc-1926276 RANDOM 154815109;155940063 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577984/ERR577984_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577984/ERR577984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577984/13091_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577984/13091_6#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577984/ERR577984_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577984/ERR577984_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577984/13091_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577984/13091_6#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256999272;7360 ERS437248 ERX536160 GENOMIC 10228076 447740200 2014-08-12 SC_RUN_13091_6#41 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577984/13091_6#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577984/13091_6#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA346681 13091_6#41 ERR577977 SC_EXP_13091_6#34 242 71582920c78389d44a7506647b0f00e5;33efd78323078dde897bd6cc2f8d6e78 1313 b563208ffc7dcf83da533233a4da0052;005040886776e30a508e2c6bbec2bebf SAMEA2467484 2014-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577977/ERR577977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577977/ERR577977_2.fastq.gz 4205242 WGS PATH3537-sc-1926269 RANDOM 146985731;146604947 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577977/ERR577977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577977/ERR577977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577977/13091_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577977/13091_6#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577977/ERR577977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577977/ERR577977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577977/13091_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577977/13091_6#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241742979;6814 ERS437241 ERX536153 GENOMIC 10228087 420524200 2014-08-12 SC_RUN_13091_6#34 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577977/13091_6#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577977/13091_6#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA346681 13091_6#34 ERR577944 SC_EXP_13091_6#1 242 c983077fa81987545b1199b3c44f8c2a;f45113a8a349d933629a36ed11d07367 1313 0c9be82c3b0c2803ba64f092fe676ac0;4dbc8a6e8cb491224920cddac28f6414 SAMEA2467450 2014-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577944/ERR577944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577944/ERR577944_2.fastq.gz 5455318 WGS PATH3503-sc-1926235 RANDOM 191245312;192778876 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577944/ERR577944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR577/ERR577944/ERR577944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577944/13091_6#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577944/13091_6#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577944/ERR577944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR577/ERR577944/ERR577944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577944/13091_6#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR577/ERR577944/13091_6#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 319377079;8779 ERS437207 ERX536120 GENOMIC 10228071 545531800 2014-08-12 SC_RUN_13091_6#1 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577944/13091_6#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR577/ERR577944/13091_6#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA346681 13091_6#1 ERR568770 SC_EXP_12838_1#81 250 82bc28414ee74701b160c7b36e7d6aa6;2e72067499f0045713ad26bd23de0468 1313 a40882cfe406978d033638f278e8d842;3861e7f7edd2e23b248a99dff6c5afb3 SAMEA2335919 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568770/ERR568770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568770/ERR568770_2.fastq.gz 7105168 WGS PATH3477-sc-1810846 RANDOM 235339174;223126407 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568770/ERR568770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568770/ERR568770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568770/12838_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568770/12838_1#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568770/ERR568770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568770/ERR568770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568770/12838_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568770/12838_1#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 378914066;11457 ERS394113 ERX527759 GENOMIC 9723776 710516800 2014-07-23 SC_RUN_12838_1#81 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568770/12838_1#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568770/12838_1#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12838_1#81 ERR568751 SC_EXP_12838_1#62 250 16020e082dd37a619e05f49845395441;78fadd03cc11722d53eafe6484cafb3e 1313 7cfe32e0d8fa3208159e12bc89ec5a90;5a7f709748f618ff63f90b229be24011 SAMEA2335686 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568751/ERR568751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568751/ERR568751_2.fastq.gz 5889010 WGS PATH2523-sc-1810611 RANDOM 196286905;184912429 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568751/ERR568751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568751/ERR568751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568751/12838_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568751/12838_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568751/ERR568751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568751/ERR568751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568751/12838_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568751/12838_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 312948237;9594 ERS393880 ERX527740 GENOMIC 9723833 588901000 2014-07-23 SC_RUN_12838_1#62 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568751/12838_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568751/12838_1#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12838_1#62 ERR563850 SC_EXP_12754_3#1 235 ddda87561f42b9f3591f496d301282ba;a585d4f7f07aec200d5bba98220a3c8f 1313 4f5ab15b6410917116061654675a583f;c067a6747f336ecd39ad94f6a4e17ad4 SAMEA2383116 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563850/ERR563850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563850/ERR563850_2.fastq.gz 5396776 WGS 2102095_II-sc-1870367 RANDOM 185751805;189908654 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563850/ERR563850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563850/ERR563850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563850/12754_3#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563850/12754_3#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563850/ERR563850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563850/ERR563850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563850/12754_3#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563850/12754_3#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 311253348;8863 ERS409441 ERX522875 GENOMIC 9922010 539677600 2014-07-16 SC_RUN_12754_3#1 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563850/12754_3#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563850/12754_3#1.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#1 ERR505694 SC_EXP_12291_3#63 215 e86547ecd72d8edcb131e93c3722a76a;f94e1f25e30b3dcbbede86a633c737e2 1313 3aa1cf051f438d5c5aa0fc16efad155c;4e6dd5982a486219fd6f321ecca0ce97 SAMEA2335905 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505694/ERR505694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505694/ERR505694_2.fastq.gz 5015894 WGS PATH3463-sc-1810832 RANDOM 158735962;165362614 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505694/ERR505694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505694/ERR505694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505694/12291_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505694/12291_3#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505694/ERR505694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505694/ERR505694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505694/12291_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505694/12291_3#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266964284;8020 ERS394099 ERX471051 GENOMIC 9439885 501589400 2014-05-19 SC_RUN_12291_3#63 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505694/12291_3#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505694/12291_3#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#63 ERR505713 SC_EXP_12291_3#86 215 254defd5a26a5ef527506ce9a8a333cf;ded6789547631819014fc0876ae671cb 1313 e9f976fde79f21e96df26dc9da091309;c86b7d4edd1b4a014864458f7b02a94f SAMEA2335928 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505713/ERR505713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505713/ERR505713_2.fastq.gz 4559934 WGS PATH3486-sc-1810855 RANDOM 147680973;155039714 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505713/ERR505713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505713/ERR505713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505713/12291_3#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505713/12291_3#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505713/ERR505713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505713/ERR505713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505713/12291_3#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505713/12291_3#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248923318;7261 ERS394122 ERX471070 GENOMIC 9439876 455993400 2014-05-19 SC_RUN_12291_3#86 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505713/12291_3#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505713/12291_3#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#86 ERR505636 SC_EXP_12291_3#1 215 dc7cf817aef521f4ddbebd4566f53c2a;1fb78d8bd09ce659d8b2da34ebcf3adc 1313 0a0a07183dc960bf998647839f87c279;05490679117a0fe51737f92c0069db2e SAMEA2335843 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505636/ERR505636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505636/ERR505636_2.fastq.gz 5696914 WGS PATH3272-sc-1810769 RANDOM 185357795;190767071 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505636/ERR505636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505636/ERR505636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505636/12291_3#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505636/12291_3#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505636/ERR505636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505636/ERR505636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505636/12291_3#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505636/12291_3#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 310108925;8849 ERS394037 ERX470993 GENOMIC 9439806 569691400 2014-05-19 SC_RUN_12291_3#1 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505636/12291_3#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505636/12291_3#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#1 ERR505671 SC_EXP_12291_3#39 215 6cef46d9d2513db818101a33b2f50092;e3a6e9c9357c6196c752a9388073ee02 1313 25e2213e3930ea4a8514e4bddb86786a;7f4c0ca56b9684c60d793276f7ee68c7 SAMEA2335881 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505671/ERR505671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505671/ERR505671_2.fastq.gz 5155408 WGS PATH3439-sc-1810808 RANDOM 162822820;169956083 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505671/ERR505671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505671/ERR505671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505671/12291_3#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505671/12291_3#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505671/ERR505671_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505671/ERR505671_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505671/12291_3#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505671/12291_3#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 271885876;8324 ERS394075 ERX471028 GENOMIC 9439882 515540800 2014-05-19 SC_RUN_12291_3#39 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505671/12291_3#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505671/12291_3#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#39 ERR461909 SC_EXP_11893_1#86 234 46767e8f4c565d7d6bfc50965ccfb997;8c8e83928291db85ee0188be34b8a004 1313 a030f0687ea0d89198a3fdb947fbd707;b4e7ebae238533643db13a6b54ae1589 SAMEA2238845 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461909/ERR461909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461909/ERR461909_2.fastq.gz 4362922 WGS 2104279-sc-2013-11-05T12:03:22Z-1750208 RANDOM 151223294;157092233 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461909/ERR461909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461909/ERR461909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461909/11893_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461909/11893_1#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461909/ERR461909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461909/ERR461909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461909/11893_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461909/11893_1#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 255204346;7079 ERS367657 ERX428250 GENOMIC 9028194 436292200 2014-03-18 SC_RUN_11893_1#86 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461909/11893_1#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461909/11893_1#86.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#86 ERR2091061 SC_EXP_22841_3#140 405 c93b93d4d40e5f8b77d9ae9e6e8c891a;f4b9383562990b98b879e0c20753bb44 1313 da79598db5bcdb8c211d7b612fbc7778;7554b4c0c49c2d5685fb68f185b456f6 SAMEA104035920 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091061/ERR2091061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091061/ERR2091061_2.fastq.gz 2642384 WGS ca1bbc30-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 57949934;62401266 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091061/ERR2091061_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091061/ERR2091061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091061/22841_3#140.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091061/22841_3#140.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091061/ERR2091061_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091061/ERR2091061_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091061/22841_3#140.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091061/22841_3#140.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85768467;4414 ERS1699813 ERX2147855 GENOMIC DN483670V:G6 330298000 2017-08-08 SC_RUN_22841_3#140 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091061/22841_3#140.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091061/22841_3#140.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#140 ERR2090910 SC_EXP_22841_2#179 365 ac566c8fc5f6e4aabd8c46cc5af87ae8;c6091a7f4209584667dc0f9e088b6e87 1313 318b2b609529df103b77e1b18a1251bb;6e5411feaefc7f0c57c30330b79318b3 SAMEA104035762 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090910/ERR2090910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090910/ERR2090910_2.fastq.gz 3078458 WGS bb534010-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 67048364;73108641 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090910/ERR2090910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090910/ERR2090910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090910/22841_2#179.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090910/22841_2#179.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090910/ERR2090910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090910/ERR2090910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090910/22841_2#179.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090910/22841_2#179.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 98969470;5007 ERS1699655 ERX2147704 GENOMIC DN483654V:D11 384807250 2017-08-08 SC_RUN_22841_2#179 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090910/22841_2#179.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090910/22841_2#179.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#179 ERR461847 SC_EXP_11893_1#21 234 636f823c89535c673d5d504a183d2ad9;1f82a785c15b2637619d1548c6f15d5a 1313 8fe7561b8c0db5f8c465732844d1a5eb;3295d37885216285df686a6df48f6b1a SAMEA2238778 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461847/ERR461847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461847/ERR461847_2.fastq.gz 5649384 WGS 2102095-sc-2013-11-05T12:02:17Z-1750141 RANDOM 191420233;197307920 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461847/ERR461847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461847/ERR461847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461847/11893_1#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461847/11893_1#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461847/ERR461847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461847/ERR461847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461847/11893_1#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461847/11893_1#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 320564945;9264 ERS367590 ERX428188 GENOMIC 9028174 564938400 2014-03-18 SC_RUN_11893_1#21 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461847/11893_1#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461847/11893_1#21.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#21 ERR1202400 SC_EXP_17870_8#140 447 af2fec5234a410d575f3460e2097b586;e3051fd3bbb5938afdd1ee44a8246b3d 1313 afb19ef744c638f39c5fdb4c79a1ec05;3cf02c15a67d8629a4473d545614fcae SAMEA3389913 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202400/ERR1202400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202400/ERR1202400_2.fastq.gz 2636826 WGS GPS_MW_1027358_R1-sc-2296157 RANDOM 49210862;53611238 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202400/ERR1202400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202400/ERR1202400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202400/17870_8#140.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202400/17870_8#140.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202400/ERR1202400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202400/ERR1202400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202400/17870_8#140.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202400/17870_8#140.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76842153;4379 ERS726016 ERX1274642 GENOMIC 14977628 329603250 2016-01-12 SC_RUN_17870_8#140 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202400/17870_8#140.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202400/17870_8#140.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#140 ERR1066262 SC_EXP_17175_7#69 468 10ad6776d4d27892d4b91d2dcbddaf08;b78a6267661eecab5f038ad2f1e905e1 1313 de5e8ff7faef937600098ad7bac770b0;240f17ad3f152418c421b17186f57c53 SAMEA3354038 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066262/ERR1066262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066262/ERR1066262_2.fastq.gz 4415822 WGS GPS_ZA_2861-sc-2278644 RANDOM 81024420;83442897 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066262/ERR1066262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066262/ERR1066262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066262/17175_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066262/17175_7#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066262/ERR1066262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066262/ERR1066262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066262/17175_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066262/17175_7#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 127157533;7330 ERS708393 ERX1146412 GENOMIC 14427475 551977750 2015-10-13 SC_RUN_17175_7#69 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066262/17175_7#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066262/17175_7#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#69 ERR1066316 SC_EXP_17175_8#32 467 fa1fda505900160467d681a4c81200a4;5d0993d55f32a93370b374a1b778ef40 1313 75ec6c34d6621f46d2ed359578586c52;602b54ab4c8e5f52aacc8c0c539c909d SAMEA3353961 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066316/ERR1066316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066316/ERR1066316_2.fastq.gz 4767468 WGS GPS_ZA_2914-sc-2278567 RANDOM 86833484;90505481 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066316/ERR1066316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066316/ERR1066316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066316/17175_8#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066316/17175_8#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066316/ERR1066316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066316/ERR1066316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066316/17175_8#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066316/17175_8#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 135997381;7916 ERS708316 ERX1146466 GENOMIC 14455773 595933500 2015-10-13 SC_RUN_17175_8#32 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066316/17175_8#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066316/17175_8#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#32 ERR979948 SC_EXP_16288_3#75 234 41bad73d2d0f74cc60cfeee7d7671b06;9e92a438183c25ceae2864c3a7c709d5 1313 2006efc3b8a8050dcc89e765788ee239;5bc86a4aa090b39e193c5c6438af4639 SAMEA3232418 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979948/ERR979948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979948/ERR979948_2.fastq.gz 3890576 WGS GPS_NP_2041-sc-2205336 RANDOM 126996151;124372359 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979948/ERR979948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979948/ERR979948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979948/16288_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979948/16288_3#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979948/ERR979948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979948/ERR979948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979948/16288_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979948/16288_3#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 202990208;6258 ERS653629 ERX1056820 GENOMIC 13296169 389057600 2015-08-12 SC_RUN_16288_3#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979948/16288_3#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979948/16288_3#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#75 ERR925071 SC_EXP_15995_1#45 231 2b51a5ace32f643e5b31929800c6ed50;2a5af2d14e0acde5579ed1b564c7a030 1313 6d5f98ac37f609e2147e1fc54c87cfb8;9939dfbe4877bf1600605b3feb3b0049 SAMEA3206791 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925071/ERR925071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925071/ERR925071_2.fastq.gz 1490326 WGS GPS_ZA_carriage_SP149-sc-2191725 RANDOM 46190246;47990955 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925071/ERR925071_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925071/ERR925071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925071/15995_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925071/15995_1#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925071/ERR925071_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925071/ERR925071_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925071/15995_1#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925071/15995_1#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76111801;2525 ERS638801 ERX1004346 GENOMIC 13241021 149032600 2015-06-23 SC_RUN_15995_1#45 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925071/15995_1#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925071/15995_1#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#45 ERR909093 SC_EXP_15841_3#54 225 a5584549fa36066fc0854827cd238092;06a72d8dd7aeed2c7cb17d8d8653c1bd 1313 2786089f8b802300a4c435b437eaa6d1;c2418d06d53c47cca2a8e3e10c996786 SAMEA3208700 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909093/ERR909093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909093/ERR909093_2.fastq.gz 4728322 WGS GPS_ZA_carriage_SP732-sc-2204834 RANDOM 143740094;147508339 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909093/ERR909093_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909093/ERR909093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909093/15841_3#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909093/15841_3#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909093/ERR909093_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909093/ERR909093_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909093/15841_3#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909093/15841_3#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234168717;7642 ERS639802 ERX988348 GENOMIC 13267854 472832200 2015-06-09 SC_RUN_15841_3#54 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909093/15841_3#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909093/15841_3#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#54 ERR913480 SC_EXP_15873_5#84 208 b4e3deb014dce19d31c2a7f8019ad0a8;28022d8b6fad83ba95c12202d602383e 1313 b26116d694ba5b923eaff3e8e5c48123;0607d14d512026dcce2e0a3c9354bf8c SAMEA3233407 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913480/ERR913480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913480/ERR913480_2.fastq.gz 11624998 WGS GPS_GM_1531-sc-2206165 RANDOM 357859589;371637566 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913480/ERR913480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913480/ERR913480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913480/15873_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913480/15873_5#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913480/ERR913480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913480/ERR913480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913480/15873_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913480/15873_5#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 600522834;18440 ERS654600 ERX992604 GENOMIC 13308422 1162499800 2015-06-17 SC_RUN_15873_5#84 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913480/15873_5#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913480/15873_5#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_5#84 ERR913081 SC_EXP_15873_1#23 206 1aa7fe30fbcd197a18aabe73b74147e6;43f79a9d4c910cee2e758ffae0be19ce 1313 f66f91b3cf98760e99e6350d8e2748b1;3f213ad221b1dd132059c01b8d84062a SAMEA3207123 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913081/ERR913081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913081/ERR913081_2.fastq.gz 4874636 WGS GPS_ZA_carriage_SP550-sc-2192061 RANDOM 151380131;158443093 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913081/ERR913081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913081/ERR913081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913081/15873_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913081/15873_1#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913081/ERR913081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913081/ERR913081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913081/15873_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913081/15873_1#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251155083;7910 ERS639133 ERX992205 GENOMIC 13227608 487463600 2015-06-17 SC_RUN_15873_1#23 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913081/15873_1#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913081/15873_1#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#23 ERR774483 SC_EXP_14936_4#10 220 a63ce12d3fc18df8deccb01e0d2acbea;e156d8734c658192824fadf872bfac9c 1313 f3428eae8de86283407ab5cfb6588075;854d260c82823e3b87e383d62b771cce SAMEA2814315 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774483/ERR774483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774483/ERR774483_2.fastq.gz 3625856 WGS GPS_ZA_2527-sc-2138109 RANDOM 133498076;134585494 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774483/ERR774483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774483/ERR774483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774483/14936_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774483/14936_4#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774483/ERR774483_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774483/ERR774483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774483/14936_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774483/14936_4#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222455198;5871 ERS566683 ERX717362 GENOMIC 12347931 362585600 2015-03-03 SC_RUN_14936_4#10 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774483/14936_4#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774483/14936_4#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#10 ERR884441 SC_EXP_15682_2#48 211 ce0bfc9236ba2e4d1f87a75e50986719;a34121488cb6bc3af9155d10dc69cf15 1313 e207ac14a3902a1f40e41f30f49af58c;48c5fbf6152e85fac8ae6ae4b4c8a3d1 SAMEA3176163 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884441/ERR884441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884441/ERR884441_2.fastq.gz 5463924 WGS GPS_PL_7714_12-sc-2191222 RANDOM 175123394;180348156 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884441/ERR884441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884441/ERR884441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884441/15682_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884441/15682_2#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884441/ERR884441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884441/ERR884441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884441/15682_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884441/15682_2#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287425296;8847 ERS629111 ERX963844 GENOMIC 13029690 546392400 2015-05-21 SC_RUN_15682_2#48 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884441/15682_2#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884441/15682_2#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_2#48 ERR600432 SC_EXP_13415_5#28 246 4d547a2efc6ca9a533837214a857e76a;70d04e67bc0b0fdd41c8429925011b20 1313 fa882750f2a36ea5ce172fa956794601;ce14732dfd6e2dfb5e4a39227682db1d SAMEA2553900 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600432/ERR600432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600432/ERR600432_2.fastq.gz 4655380 WGS GPS_ZA_836-sc-1950982 RANDOM 153252590;159878902 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600432/ERR600432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600432/ERR600432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600432/13415_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600432/13415_5#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600432/ERR600432_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600432/ERR600432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600432/13415_5#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600432/13415_5#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256782210;7578 ERS464401 ERX557261 GENOMIC 10646229 465538000 2014-09-16 SC_RUN_13415_5#28 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600432/13415_5#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600432/13415_5#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#28 ERR568683 SC_EXP_12837_3#82 231 f036ab6717e5da5527b7650d4ae20998;9a4e325df75f2d9d9d172f82c3caa94e 1313 e777c0c31b05a9de1c3ed18f49b944d1;69be01d7f8c31fa4b616a9d80bd4e9e0 SAMEA2434670 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568683/ERR568683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568683/ERR568683_2.fastq.gz 5342822 WGS SA_GPS_SP565-sc-1895735 RANDOM 167513089;174649221 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568683/ERR568683_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568683/ERR568683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568683/12837_3#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568683/12837_3#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568683/ERR568683_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568683/ERR568683_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568683/12837_3#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568683/12837_3#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276193454;8988 ERS428847 ERX527672 GENOMIC 9986312 534282200 2014-07-23 SC_RUN_12837_3#82 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568683/12837_3#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568683/12837_3#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#82 ERR730603 SC_EXP_14555_3#85 227 a827d0f44cdbe938fb4a4c80d09eb032;ed48eea8c7595eeb0d505611c894238b 1313 3c35f7a51c0da1c850def6060a33b515;72f5ccd9bd32daf8ea991589697ce405 SAMEA2658505 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730603/ERR730603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730603/ERR730603_2.fastq.gz 4394670 WGS GPS_ZA_1367-sc-2021110 RANDOM 145856819;150315412 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730603/ERR730603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730603/ERR730603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730603/14555_3#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730603/14555_3#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730603/ERR730603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730603/ERR730603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730603/14555_3#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730603/14555_3#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242694692;7065 ERS508533 ERX674549 GENOMIC 11820740 439467000 2015-01-14 SC_RUN_14555_3#85 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730603/14555_3#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730603/14555_3#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#85 ERR505929 SC_EXP_12291_6#38 219 86ed66bc73443c2cada8d3139b90e7fe;45fe5d718004247038288dca3e24b1e6 1313 3569ac122fe6c5d35b9c168918782c96;da5ed76317175c3d11bccc8537c4aa50 SAMEA2298220 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505929/ERR505929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505929/ERR505929_2.fastq.gz 4370256 WGS SA_GPS_SP154-sc-1810430 RANDOM 135169412;140564473 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505929/ERR505929_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505929/ERR505929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505929/12291_6#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505929/12291_6#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505929/ERR505929_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505929/ERR505929_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505929/12291_6#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505929/12291_6#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 224327134;7197 ERS390678 ERX471286 GENOMIC 9367900 437025600 2014-05-19 SC_RUN_12291_6#38 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505929/12291_6#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505929/12291_6#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_6#38 ERR516639 SC_EXP_12378_2#32 207 e667764347278db31de8367beafb7e54;0551af7902d4205afa4601650e6b3de1 1313 c5e4c7b6697524e1514e3f74ef6d7af0;f8b6330c59099b41afe57a741824ed34 SAMEA2341482 2014-05-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR516/ERR516639/ERR516639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR516/ERR516639/ERR516639_2.fastq.gz 6014822 WGS D1703-sc-1811561 RANDOM 197459197;203881420 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR516/ERR516639/ERR516639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR516/ERR516639/ERR516639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR516/ERR516639/12378_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR516/ERR516639/12378_2#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR516/ERR516639/ERR516639_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR516/ERR516639/ERR516639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR516/ERR516639/12378_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR516/ERR516639/12378_2#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 328974671;9673 ERS399153 ERX481874 GENOMIC 9469781 601482200 2014-05-27 SC_RUN_12378_2#32 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR516/ERR516639/12378_2#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR516/ERR516639/12378_2#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA313838 12378_2#32 ERR490762 SC_EXP_12162_1#58 223 da36cf80dc618e20f322a21935b46565;803830f492a52262f75c5c3d6a85e351 1313 29f1439156af0163957a8e11b606fd00;b2d29daaf78c5d3d953c14a2dcfc868a SAMEA2298335 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490762/ERR490762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490762/ERR490762_2.fastq.gz 4796470 WGS SA_GPS_SP269-sc-1810546 RANDOM 146556462;155539005 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490762/ERR490762_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490762/ERR490762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490762/12162_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490762/12162_1#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490762/ERR490762_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490762/ERR490762_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490762/12162_1#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490762/12162_1#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247625652;7847 ERS390793 ERX456216 GENOMIC 9340461 479647000 2014-04-28 SC_RUN_12162_1#58 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490762/12162_1#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490762/12162_1#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12162_1#58 ERR461824 SC_EXP_11861_5#87 221 be57716bbf06e5008393d329dcd69770;1c5ad6814b0fb6267bd8028c47f0d4e0 1313 773cbe55abf8afe1fb5f4adbe07d6637;5a3364025c3b85ddf454fb905d47ede2 SAMEA2239312 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461824/ERR461824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461824/ERR461824_2.fastq.gz 4053370 WGS 2081043-sc-2013-11-05T12:11:34Z-1750685 RANDOM 125569310;131057050 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461824/ERR461824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461824/ERR461824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461824/11861_5#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461824/11861_5#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461824/ERR461824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461824/ERR461824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461824/11861_5#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461824/11861_5#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 208390074;6641 ERS368124 ERX428165 GENOMIC 9017897 405337000 2014-03-18 SC_RUN_11861_5#87 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461824/11861_5#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461824/11861_5#87.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461860 SC_EXP_11893_1#35 234 8d6589e360f6e0f8650c8af4a89f96ed;e709bb0cbb8fb3a7fa53513349c3eb4c 1313 75b8cbb4cde60c640cab8d6ad3303310;a3753e5b3d88aa30f7361b97a27b801f SAMEA2238792 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461860/ERR461860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461860/ERR461860_2.fastq.gz 4471890 WGS 2102586-sc-2013-11-05T12:02:31Z-1750155 RANDOM 150486211;156581513 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461860/ERR461860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461860/ERR461860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461860/11893_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461860/11893_1#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461860/ERR461860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461860/ERR461860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461860/11893_1#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461860/11893_1#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 253651461;7378 ERS367604 ERX428201 GENOMIC 9028152 447189000 2014-03-18 SC_RUN_11893_1#35 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461860/11893_1#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461860/11893_1#35.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR490837 SC_EXP_12169_1#38 224 3001b4a874977aacd535c12401557448;9a93e1b3635a3b9e59390ca7150b6c96 1313 cb0560b9abac446281b3499c02467dcb;c13f1ed4c48d44df43606a52def0f0ee SAMEA2298220 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490837/ERR490837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490837/ERR490837_2.fastq.gz 2686590 WGS SA_GPS_SP154-sc-1810430 RANDOM 75590475;77922674 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490837/ERR490837_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490837/ERR490837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490837/12169_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490837/12169_1#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490837/ERR490837_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490837/ERR490837_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490837/12169_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490837/12169_1#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 122664379;4462 ERS390678 ERX456291 GENOMIC 9367900 268659000 2014-04-28 SC_RUN_12169_1#38 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490837/12169_1#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490837/12169_1#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12291_6#38 ERR433547 SC_EXP_11657_2#27 228 11a0071ef73192fadbe641b66bf9c416;4c79b5c6cfd0f7d8371dff2ed40c58e5 1313 1afee8205afb2b8ef34e4deae29904d7;d7a6defb48300a2ac1c73a8f389bab8e SAMEA1966986 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433547/ERR433547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433547/ERR433547_2.fastq.gz 5356270 WGS 0043_99-sc-2013-07-03T13:36:16Z-1659406 RANDOM 189673825;194064073 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433547/ERR433547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433547/ERR433547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433547/11657_2#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433547/11657_2#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433547/ERR433547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433547/ERR433547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433547/11657_2#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433547/11657_2#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318038382;8635 ERS322577 ERX399822 GENOMIC 8593136 535627000 2014-02-18 SC_RUN_11657_2#27 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433547/11657_2#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433547/11657_2#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_2#27 ERR064172 SC_EXP_6949_2#10 257 0e1eedf7afad88f52335a088e790aa2c 1313 84b37dfe96b203069838ac12c50a6254;140489a7dab8b20b5a001aa53ec7ff33 SAMEA1029164 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064172/ERR064172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064172/ERR064172_2.fastq.gz 9131062 WGS SMRU2434-sc-2011-01-27-1062647 RANDOM 464866144;487123761 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064172/ERR064172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064172/ERR064172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064172/6949_2#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064172/ERR064172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064172/ERR064172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064172/6949_2#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1196361320 ERS021944 ERX042145 GENOMIC 3660711 1369659300 2012-03-19 SC_RUN_6949_2#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064172/6949_2#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063958 SC_EXP_6925_5#5 235 f2552d46eb1be22edd50e4ab81e0d403 1313 da06ec5307532e8dac5be0233dabd129;fa86564ca8e0f10bbcc0470cf67ac89f SAMEA1025953 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063958/ERR063958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063958/ERR063958_2.fastq.gz 4184949 WGS SMRU2165-sc-2011-01-27-1062378 RANDOM 250818722;247188557 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063958/ERR063958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063958/ERR063958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063958/6925_5#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063958/ERR063958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063958/ERR063958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063958/6925_5#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 652057126 ERS021675 ERX041931 GENOMIC 3610961 627742350 2012-01-05 SC_RUN_6925_5#5 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063958/6925_5#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR433872 SC_EXP_11658_2#16 231 bca32f5cf1d5cd853cd529d269af7480;b24e3642f1d12ab33a7f4f7e0778d88d 1313 226799b542c2ecc35af5defd551841f3;26172b98bb472a3c16594195d4dc5bdd SAMEA2204149 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433872/ERR433872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433872/ERR433872_2.fastq.gz 4512742 WGS PATH2305-sc-2013-10-09T11:56:14Z-1712742 RANDOM 140848994;146561772 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433872/ERR433872_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433872/ERR433872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433872/11658_2#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433872/11658_2#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433872/ERR433872_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433872/ERR433872_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433872/11658_2#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433872/11658_2#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230106105;7575 ERS356660 ERX400147 GENOMIC 8593388 451274200 2014-02-18 SC_RUN_11658_2#16 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433872/11658_2#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433872/11658_2#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#16 ERR051589 SC_EXP_6731_3#11 214 41bcd4b5e2a81615e30959e8e323b456 1313 894316897e152da8665790322a6af6e1;ca5ed517bfd9e559fba6debc281feaf8 SAMEA1024852 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051589/ERR051589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051589/ERR051589_2.fastq.gz 4087272 WGS SMRU1043-sc-2011-01-27-1061256 RANDOM 234911134;245379612 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051589/ERR051589_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051589/ERR051589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051589/6731_3#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051589/ERR051589_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051589/ERR051589_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051589/6731_3#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 617676302 ERS020553 ERX028637 GENOMIC 3246243 613090800 2011-11-02 SC_RUN_6731_3#11 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051589/6731_3#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR054457 SC_EXP_6753_2#20 243 aac5db1d8279a2779b637f5a9759f21b 1313 eea318093de372d4754f7e6247f7c8c7;503cb026022add7ad5632d89a667804f SAMEA1025202 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054457/ERR054457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054457/ERR054457_2.fastq.gz 3570215 WGS SMRU1509-sc-2011-01-27-1061722 RANDOM 187592438;193965417 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054457/ERR054457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054457/ERR054457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054457/6753_2#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054457/ERR054457_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054457/ERR054457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054457/6753_2#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 496791544 ERS021019 ERX031503 GENOMIC 3414193 535532250 2011-11-15 SC_RUN_6753_2#20 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054457/6753_2#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051482 SC_EXP_6730_5#24 234 f7df785a79ff5c5bc45a06207c283a55 1313 4b70010dd2984f28eba7431891fa57b1;eb63cea35517f3889cdc8a0291c8be65 SAMEA1024584 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051482/ERR051482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051482/ERR051482_2.fastq.gz 6465224 WGS SMRU672-sc-2011-01-27-1060861 RANDOM 381158679;398782201 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051482/ERR051482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051482/ERR051482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051482/6730_5#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051482/ERR051482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051482/ERR051482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051482/6730_5#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 973096768 ERS020182 ERX028530 GENOMIC 3100173 969783600 2011-11-02 SC_RUN_6730_5#24 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051482/6730_5#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR057801 SC_EXP_6807_2#19 221 5e5b1eb3383b68a93a4a507975d720be 1313 0a091dd8bafd6925e6e7d9ccc6fe5468;9ef7d8fb851e25031fb9959b78c6a93d SAMEA1025562 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057801/ERR057801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057801/ERR057801_2.fastq.gz 3251397 WGS SMRU1603-sc-2011-01-27-1061816 RANDOM 202127488;199454197 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057801/ERR057801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057801/ERR057801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057801/6807_2#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057801/ERR057801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057801/ERR057801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057801/6807_2#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 507565969 ERS021113 ERX035647 GENOMIC 3414299 487709550 2011-12-05 SC_RUN_6807_2#19 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057801/6807_2#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057994 SC_EXP_6823_7#21 247 147a5a66906d4eb85b2879a6a66f29f0 1313 d9493bace3a63e91019d1a196a9e4308;2d01c639f7d7d0e8f69a8d3531cafecd SAMEA1026067 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057994/ERR057994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057994/ERR057994_2.fastq.gz 1863874 WGS SMRU2013-sc-2011-01-27-1062226 RANDOM 116760053;112042389 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057994/ERR057994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057994/ERR057994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057994/6823_7#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057994/ERR057994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057994/ERR057994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057994/6823_7#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 291130029 ERS021523 ERX035840 GENOMIC 3469242 279581100 2012-03-22 SC_RUN_6823_7#21 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057994/6823_7#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057783 SC_EXP_6807_2#1 221 135d7e336262d90636583a0410cdb8a5 1313 0121a5e1695c731abd6ab5f750f53fd7;9dccba850477c6990f4fa9db3826012c SAMEA1025362 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057783/ERR057783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057783/ERR057783_2.fastq.gz 3507093 WGS SMRU1585-sc-2011-01-27-1061798 RANDOM 215232900;214325953 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057783/ERR057783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057783/ERR057783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057783/6807_2#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057783/ERR057783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057783/ERR057783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057783/6807_2#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 549538961 ERS021095 ERX035629 GENOMIC 3414281 526063950 2011-12-05 SC_RUN_6807_2#1 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057783/6807_2#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057849 SC_EXP_6823_1#20 240 0e4c856af426d71d8e220acb03b5591a 1313 43bb38654e608a006cd2783d31e98983;14a9a39b97306fbc8f6eaa386f33f995 SAMEA1026140 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057849/ERR057849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057849/ERR057849_2.fastq.gz 5569375 WGS SMRU1868-sc-2011-01-27-1062081 RANDOM 339827599;354979678 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057849/ERR057849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057849/ERR057849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057849/6823_1#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057849/ERR057849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057849/ERR057849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057849/6823_1#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 891929799 ERS021378 ERX035695 GENOMIC 3469097 835406250 2012-03-22 SC_RUN_6823_1#20 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057849/6823_1#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR072225 SC_EXP_7054_6#4 234 e35f9504c9652b7248e370aaadeba550 1313 bac9aeb0482d9525024b5b1c89cd593d;395fc1a2c6b693fc1309f43453413990 SAMEA1029285 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072225/ERR072225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072225/ERR072225_2.fastq.gz 3390552 WGS SMRU3076-sc-2011-01-27-1063289 RANDOM 200851926;208946507 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072225/ERR072225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072225/ERR072225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072225/7054_6#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072225/ERR072225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072225/ERR072225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072225/7054_6#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 526278334 ERS022586 ERX049991 GENOMIC 3888067 508582800 2012-01-31 SC_RUN_7054_6#4 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072225/7054_6#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR060033 SC_EXP_6841_7#5 222 87759af3a26920c96d28b427a67fdbf4 1313 20d706cadad32dc14daa8062c696b564;1c301ee0af857fe8e45df255f9a3adb7 SAMEA1025537 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060033/ERR060033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060033/ERR060033_2.fastq.gz 6381328 WGS SMRU1325-sc-2011-01-27-1061538 RANDOM 429870065;443620252 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060033/ERR060033_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060033/ERR060033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060033/6841_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060033/ERR060033_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060033/ERR060033_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060033/6841_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1098050182 ERS020835 ERX037871 GENOMIC 3348783 957199200 2011-12-13 SC_RUN_6841_7#5 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060033/6841_7#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR052612 SC_EXP_6714_7#11 225 a385b3f131162291b165c1f9a9799b48 1313 0ad0ec1080c2ea88b71770c6d21797e1;7b28033618b7bd0005ebb4c4ef13bc5d SAMEA1024753 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052612/ERR052612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052612/ERR052612_2.fastq.gz 5247009 WGS SMRU755-sc-2011-01-27-1060944 RANDOM 289883377;295305683 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052612/ERR052612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052612/ERR052612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052612/6714_7#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052612/ERR052612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052612/ERR052612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052612/6714_7#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 771374895 ERS020265 ERX029660 GENOMIC 3152264 787051350 2011-11-07 SC_RUN_6714_7#11 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052612/6714_7#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR1438563 PHESPD0644 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438563 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438563 9d171035c9bd0aa6d6f9319b2fd7e739;72d58f659268f9216ed4c2e9f62f411a 1313 118123710 fc60935c175bce3910727d6d6fee8fd1;3e2a7115b6f85bbbc84be16d9d5639f0 SAMEA4022832 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438563/ERR1438563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438563/ERR1438563_2.fastq.gz 1411223 WGS PHESPD0644 RANDOM 78684051;82161521 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline f686f1ff8c9eadbfb3408fa28cbbc31e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438563/ERR1438563_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438563/ERR1438563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438563/PHESPD0644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438563/PHESPD0644.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438563/ERR1438563_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438563/ERR1438563_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438563/PHESPD0644.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438563/PHESPD0644.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 83439894;86855884 ERS1193942 ERX1508941 GENOMIC 274103606 2016-06-10 PHESPD0644 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438563/PHESPD0644.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438563/PHESPD0644.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438563 PHESPD0644 ERR1438745 PHESPD0826 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438745 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438745 97f999514a0c649543b5cad50e3c49f0;abee2957cdd25a198926e5d347dfb546 1313 31300211 e167b7c97dea840f6fa489c5061ffbc4;18055e6a53922db648e8efab09b8f8e2 SAMEA4023014 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438745/ERR1438745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438745/ERR1438745_2.fastq.gz 375804 WGS PHESPD0826 RANDOM 21084086;21624073 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline d4332a6f235c21e95e65147bc0dc284a ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438745/ERR1438745_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438745/ERR1438745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438745/PHESPD0826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438745/PHESPD0826.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438745/ERR1438745_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438745/ERR1438745_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438745/PHESPD0826.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438745/PHESPD0826.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 22550415;23071634 ERS1194124 ERX1509123 GENOMIC 73183359 2016-06-10 PHESPD0826 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438745/PHESPD0826.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438745/PHESPD0826.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438745 PHESPD0826 ERR1438557 PHESPD0638 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/007/ERR1438557 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438557 1c705450fb425ad6c640ba3430884269;e6aea3c4a8c6fd29220e17fd6dd0bfed 1313 171462333 2c43f0d43a0957172079293087d23767;d718c86d12a4dcd480c8947a1069f95e SAMEA4022826 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438557/ERR1438557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438557/ERR1438557_2.fastq.gz 2065608 WGS PHESPD0638 RANDOM 115389614;118440021 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 3bc38e113891ce8a867047f2949ba615 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438557/ERR1438557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/007/ERR1438557/ERR1438557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438557/PHESPD0638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438557/PHESPD0638.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438557/ERR1438557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/007/ERR1438557/ERR1438557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438557/PHESPD0638.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438557/PHESPD0638.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 121998668;125014358 ERS1193936 ERX1508935 GENOMIC 402126027 2016-06-10 PHESPD0638 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438557/PHESPD0638.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438557/PHESPD0638.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/007/ERR1438557 PHESPD0638 ERR1438500 PHESPD0581 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438500 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438500 be2de8b0919af0237a0cfb57f2732aca;f1d62509968326a581b1f816134801e1 1313 134499047 c44bc0951a5f391e6e99778b9757f4d3;26a2cd332ff5667323923dac8b9f3137 SAMEA4022769 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438500/ERR1438500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438500/ERR1438500_2.fastq.gz 1621787 WGS PHESPD0581 RANDOM 90656009;92583504 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0b0a09107519029425ca3b3bfeee16d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438500/ERR1438500_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438500/ERR1438500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438500/PHESPD0581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438500/PHESPD0581.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438500/ERR1438500_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438500/ERR1438500_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438500/PHESPD0581.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438500/PHESPD0581.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 96033610;97951372 ERS1193879 ERX1508878 GENOMIC 316019344 2016-06-10 PHESPD0581 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438500/PHESPD0581.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438500/PHESPD0581.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438500 PHESPD0581 ERR1438499 PHESPD0580 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438499 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438499 ba2760062ad89ca644b294e229b382a9;a5eb32060a1f9d4e088d0d793399f888 1313 104470968 bb31bde48b12d1fd8669ea736c55b1a8;f11839c74190eee21a55d8a1af74345a SAMEA4022768 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438499/ERR1438499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438499/ERR1438499_2.fastq.gz 1261185 WGS PHESPD0580 RANDOM 70362310;71940429 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline aab041e0d3ce0626c35e5ae10689e50e ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438499/ERR1438499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438499/ERR1438499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438499/PHESPD0580.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438499/PHESPD0580.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438499/ERR1438499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438499/ERR1438499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438499/PHESPD0580.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438499/PHESPD0580.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 74664692;76235500 ERS1193878 ERX1508877 GENOMIC 245797793 2016-06-10 PHESPD0580 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438499/PHESPD0580.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438499/PHESPD0580.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438499 PHESPD0580 ERR1438440 PHESPD0521 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/000/ERR1438440 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438440 748110f20854f0a40e23497753156cc9;9ec5585a38bb0f7313f669dfbced96df 1313 145091453 7edf983e2ef8c0f1fecab1ab8ad866ca;73ba06216427a7c65b7e7a7484895bf5 SAMEA4022709 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438440/ERR1438440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438440/ERR1438440_2.fastq.gz 1836350 WGS PHESPD0521 RANDOM 98210310;102650298 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0f420477776e409bf9b37fb2b1e6f3c0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438440/ERR1438440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/000/ERR1438440/ERR1438440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438440/PHESPD0521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438440/PHESPD0521.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438440/ERR1438440_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/000/ERR1438440/ERR1438440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438440/PHESPD0521.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438440/PHESPD0521.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104150587;108636427 ERS1193819 ERX1508818 GENOMIC 360616911 2016-06-10 PHESPD0521 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438440/PHESPD0521.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438440/PHESPD0521.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/000/ERR1438440 PHESPD0521 ERR1438438 PHESPD0519 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438438 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438438 4f5625b934769e771a6734b0545d7456;c4a6a21c86275e93f00efb067bf5560a 1313 120457709 801cceae71b6eb331a052922baac43f7;c9a8a995b814a60268be43dd37079dd0 SAMEA4022707 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438438/ERR1438438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438438/ERR1438438_2.fastq.gz 1541389 WGS PHESPD0519 RANDOM 82623819;84456936 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a3be88deaae3c5559435f457d7a73c04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438438/ERR1438438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438438/ERR1438438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438438/PHESPD0519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438438/PHESPD0519.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438438/ERR1438438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438438/ERR1438438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438438/PHESPD0519.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438438/PHESPD0519.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87727596;89594078 ERS1193817 ERX1508816 GENOMIC 303056886 2016-06-10 PHESPD0519 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438438/PHESPD0519.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438438/PHESPD0519.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438438 PHESPD0519 ERR1438425 PHESPD0506 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438425 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438425 64482523e0056aeffdcd7e4b7e76f597;472d21be31003079555b8211ba1f1233 1313 81148339 9a6b288e0122a6a2d8dd8aa037eb1cbb;445c894b048ec778988e7f175c143cad SAMEA4022694 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438425/ERR1438425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438425/ERR1438425_2.fastq.gz 1002209 WGS PHESPD0506 RANDOM 55210360;56477512 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 20bd7ba2bc62f824a45a83e3cc1e2ca3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438425/ERR1438425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438425/ERR1438425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438425/PHESPD0506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438425/PHESPD0506.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438425/ERR1438425_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438425/ERR1438425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438425/PHESPD0506.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438425/PHESPD0506.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 58727870;59989699 ERS1193804 ERX1508803 GENOMIC 195513259 2016-06-10 PHESPD0506 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438425/PHESPD0506.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438425/PHESPD0506.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438425 PHESPD0506 ERR1438253 PHESPD0334 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438253 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438253 71ef4ccde8daa3bd5be9ec99daf15e1a;ea530e1d69612e1634e87f31f8a7b191 1313 92761007 f7a35412012868784b2539f71bddcca1;aa6aa91ed420b9a4ddd277bf2d8b688f SAMEA4022522 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438253/ERR1438253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438253/ERR1438253_2.fastq.gz 1140533 WGS PHESPD0334 RANDOM 63655547;64023107 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 443fc91b1d00db47b8a0ec1dbe653d46 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438253/ERR1438253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438253/ERR1438253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438253/PHESPD0334.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438253/PHESPD0334.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438253/ERR1438253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438253/ERR1438253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438253/PHESPD0334.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438253/PHESPD0334.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 67552184;67901714 ERS1193632 ERX1508631 GENOMIC 223271497 2016-06-10 PHESPD0334 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438253/PHESPD0334.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438253/PHESPD0334.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438253 PHESPD0334 ERR1438418 PHESPD0499 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438418 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438418 a31257df3d22ebc1883db1c1b987cb2d;c66dfc6b5a51d88001bfda4ba6762823 1313 125539819 ae9b97437ae536d5180864c27fc1ec0e;f3b63a5e798a0306e3e0839b3ac9f6fd SAMEA4022687 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438418/ERR1438418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438418/ERR1438418_2.fastq.gz 1599745 WGS PHESPD0499 RANDOM 85734734;87711395 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 576ebb9c8d3a0f738265deeb0368b6d1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438418/ERR1438418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438418/ERR1438418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438418/PHESPD0499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438418/PHESPD0499.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438418/ERR1438418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438418/ERR1438418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438418/PHESPD0499.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438418/PHESPD0499.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 91013605;93011962 ERS1193797 ERX1508796 GENOMIC 314084096 2016-06-10 PHESPD0499 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438418/PHESPD0499.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438418/PHESPD0499.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438418 PHESPD0499 ERR1438179 PHESPD0260 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/009/ERR1438179 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438179 3e21827ece331abff6f23adbf9e87f4e;89c689b1b469d0e053f9302ef41096d1 1313 69569302 97026822648092d36c97d275e014dc1e;ec1232a0e434e82c0d06d5f486ad5db7 SAMEA4022448 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438179/ERR1438179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438179/ERR1438179_2.fastq.gz 879502 WGS PHESPD0260 RANDOM 47588257;48716235 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 9eb708d0af9fdf092d3cd854baed3c7c ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438179/ERR1438179_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/009/ERR1438179/ERR1438179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438179/PHESPD0260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438179/PHESPD0260.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438179/ERR1438179_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/009/ERR1438179/ERR1438179_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438179/PHESPD0260.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438179/PHESPD0260.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 50699374;51809499 ERS1193558 ERX1508557 GENOMIC 172564241 2016-06-10 PHESPD0260 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438179/PHESPD0260.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438179/PHESPD0260.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/009/ERR1438179 PHESPD0260 ERR1438122 PHESPD0203 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438122 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438122 82def67f33b25fb22f66d7a74abc053a;c84132e2e5ab3a10ef17b2fdcc95d348 1313 121876404 479bc8572a27ab1198d8ae7194bf0c60;4fdd41687a2b12cc086a2328c2db214c SAMEA4022391 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438122/ERR1438122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438122/ERR1438122_2.fastq.gz 1508935 WGS PHESPD0203 RANDOM 82888183;84917781 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 89b16ed7552c781bbf1557a765d9a376 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438122/ERR1438122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438122/ERR1438122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438122/PHESPD0203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438122/PHESPD0203.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438122/ERR1438122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438122/ERR1438122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438122/PHESPD0203.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438122/PHESPD0203.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87874715;89915548 ERS1193501 ERX1508500 GENOMIC 294544171 2016-06-10 PHESPD0203 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438122/PHESPD0203.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438122/PHESPD0203.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438122 PHESPD0203 ERR775449 SC_EXP_14937_1#12 250 b1d4d70af6fc742ab80bf01ac10f3233;465fbf0b9aa3270aeb156aa0c0c84873 1313 1ba71384641e9cd76e0ca77ab387acce;0640b9bc3474f13629b0865f0acb5b13 SAMEA2682043 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR775/ERR775449/ERR775449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR775/ERR775449/ERR775449_2.fastq.gz 4429312 WGS UOS_6090-sc-1993061 RANDOM 152648951;158524603 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR775/ERR775449/ERR775449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR775/ERR775449/ERR775449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR775/ERR775449/14937_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR775/ERR775449/14937_1#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR775/ERR775449/ERR775449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR775/ERR775449/ERR775449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR775/ERR775449/14937_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR775/ERR775449/14937_1#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 255467901;7123 ERS518708 ERX718328 GENOMIC 12354942 442931200 2015-03-03 SC_RUN_14937_1#12 fasp.sra.ebi.ac.uk:/vol1/run/ERR775/ERR775449/14937_1#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR775/ERR775449/14937_1#12.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2000 paired end sequencing ERA414371 14937_1#12 ERR1438036 PHESPD0117 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438036 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438036 aedecee728162f7c4131a6769b808133;e8ce5fb5b5dc542059d8b167d08ca881 1313 103776704 a5d1337743d939a43a99928b48af51b6;268b1d9d1507cef476bcc9463b2be62f SAMEA4022305 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438036/ERR1438036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438036/ERR1438036_2.fastq.gz 1316540 WGS PHESPD0117 RANDOM 71015075;72608677 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 45ba6fa83fa6f9b592d2f7474383ddcc ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438036/ERR1438036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438036/ERR1438036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438036/PHESPD0117.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438036/PHESPD0117.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438036/ERR1438036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438036/ERR1438036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438036/PHESPD0117.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438036/PHESPD0117.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 75498369;77119052 ERS1193415 ERX1508414 GENOMIC 258256555 2016-06-10 PHESPD0117 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438036/PHESPD0117.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438036/PHESPD0117.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438036 PHESPD0117 ERR054239 SC_EXP_6710_6#18 229 56096d3d51a7db6d440f896d5bf5e516 1313 f19822715ade9c31d98cefcdfd141e2c;4701cfc8607b20222e1f7606da5740e8 SAMEA1025547 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054239/ERR054239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054239/ERR054239_2.fastq.gz 6310379 WGS SMRU1362-sc-2011-01-27-1061575 RANDOM 359609463;378057848 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054239/ERR054239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054239/ERR054239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054239/6710_6#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054239/ERR054239_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054239/ERR054239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054239/6710_6#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 927467163 ERS020872 ERX031285 GENOMIC 3348820 946556850 2011-11-15 SC_RUN_6710_6#18 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054239/6710_6#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR657006 SC_EXP_13681_1#18 233 04072e70d913d060502e70c92f062fa9;2c7a482120ce927f71ec91404db4989e 1313 edfb6a5861d49a066ac5e842e24e2796;315fa0fcb8ed7ef0ae353c948a0482be SAMEA2626853 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657006/ERR657006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657006/ERR657006_2.fastq.gz 2627054 WGS UOS_7106-sc-1922693 RANDOM 70529938;73084088 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657006/ERR657006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657006/ERR657006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657006/13681_1#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657006/13681_1#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657006/ERR657006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657006/ERR657006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657006/13681_1#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657006/13681_1#18.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 112755441;4421 ERS496763 ERX613329 GENOMIC 11120434 262705400 2014-10-15 SC_RUN_13681_1#18 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657006/13681_1#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657006/13681_1#18.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#18 ERR657100 SC_EXP_13681_2#18 235 d6d37179ed4f5be68b940a2658797ee1;d778f19393474bf123181476f1183627 1313 54f8356a0a920387474369fc94472971;b0ae45dc4b6db47cf33799d4a94393bd SAMEA2626853 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657100/ERR657100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657100/ERR657100_2.fastq.gz 2563524 WGS UOS_7106-sc-1922693 RANDOM 68908781;70542232 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657100/ERR657100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657100/ERR657100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657100/13681_2#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657100/13681_2#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657100/ERR657100_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657100/ERR657100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657100/13681_2#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657100/13681_2#18.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 109330125;4311 ERS496763 ERX613423 GENOMIC 11120434 256352400 2014-10-15 SC_RUN_13681_2#18 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657100/13681_2#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657100/13681_2#18.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#18 ERR054222 SC_EXP_6710_6#1 229 1758ad49b681f6a02f44fbf53130f61d 1313 6b308ecd5cbb90891a2e39a70c02a594;21a8e1ae38bc85da3bf109ab15f44185 SAMEA1025682 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054222/ERR054222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054222/ERR054222_2.fastq.gz 9957796 WGS SMRU1345-sc-2011-01-27-1061558 RANDOM 581512191;610750795 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054222/ERR054222_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054222/ERR054222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054222/6710_6#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054222/ERR054222_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054222/ERR054222_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054222/6710_6#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1478010989 ERS020855 ERX031268 GENOMIC 3348803 1493669400 2011-11-15 SC_RUN_6710_6#1 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054222/6710_6#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054349 SC_EXP_6736_6#8 247 54c74e38d93f168b547e1737297426c8 1313 3aaeff11ebdf97277f18867046a73e36;b7807bc0a2b27967c3ed9f1ff06e9862 SAMEA1025237 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054349/ERR054349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054349/ERR054349_2.fastq.gz 7130412 WGS SMRU1256-sc-2011-01-27-1061469 RANDOM 370640939;392703996 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054349/ERR054349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054349/ERR054349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054349/6736_6#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054349/ERR054349_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054349/ERR054349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054349/6736_6#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 950970003 ERS020766 ERX031395 GENOMIC 3308103 1069561800 2011-11-15 SC_RUN_6736_6#8 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054349/6736_6#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051470 SC_EXP_6730_5#12 234 2b960b49cf7471753db92151c1c2062a 1313 c5b07a88c33ba88be1a53ad48a999d68;2cd70fbe0a0345eb5612b93ba0f414b6 SAMEA1024626 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051470/ERR051470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051470/ERR051470_2.fastq.gz 3200545 WGS SMRU660-sc-2011-01-27-1060849 RANDOM 185803395;194275298 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051470/ERR051470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051470/ERR051470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051470/6730_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051470/ERR051470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051470/ERR051470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051470/6730_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 478569681 ERS020170 ERX028518 GENOMIC 3100161 480081750 2011-11-02 SC_RUN_6730_5#12 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051470/6730_5#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051633 SC_EXP_6731_5#7 232 0bf91248eebb506e8319c9983a6278b6 1313 8c6baababd235deb3a051c6f808a740a;1144d13f18987c796b66834f3f2ec295 SAMEA1024877 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051633/ERR051633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051633/ERR051633_2.fastq.gz 5110049 WGS SMRU1087-sc-2011-01-27-1061300 RANDOM 319848545;336685503 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051633/ERR051633_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051633/ERR051633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051633/6731_5#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051633/ERR051633_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051633/ERR051633_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051633/6731_5#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 832041352 ERS020597 ERX028681 GENOMIC 3246337 766507350 2011-11-02 SC_RUN_6731_5#7 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051633/6731_5#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR2091253 SC_EXP_22841_4#144 421 375cefa3a4cb6b06e4dde8887c56834b;f996c2a9289284480908d6d5ec5fe481 1313 9581537974bd9eb2a5ddabf3e62c9f21;99d11d62d83c53a3be388fea82f68e15 SAMEA104035450 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091253/ERR2091253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091253/ERR2091253_2.fastq.gz 2578634 WGS a119fe50-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51051358;54742868 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091253/ERR2091253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091253/ERR2091253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091253/22841_4#144.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091253/22841_4#144.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091253/ERR2091253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091253/ERR2091253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091253/22841_4#144.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091253/22841_4#144.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74115484;4312 ERS1699343 ERX2148047 GENOMIC DN477153Q:A7 322329250 2017-08-08 SC_RUN_22841_4#144 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091253/22841_4#144.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091253/22841_4#144.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#144 ERR1788181 SC_EXP_21053_8#170 403 b706b1790355d7a3092c0f3cf6a89ef8;83e1823e66ab1ba0eb565f894b464138 1313 09834331d64623f9d9866f050a3c64b1;787350f2df0afb21fe8aec45e0a74e98 SAMEA4388322 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788181/ERR1788181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788181/ERR1788181_2.fastq.gz 2590864 WGS 5b83a230-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 49280506;53639613 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788181/ERR1788181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/001/ERR1788181/ERR1788181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788181/21053_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788181/21053_8#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788181/ERR1788181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/001/ERR1788181/ERR1788181_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788181/21053_8#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788181/21053_8#170.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74290536;4370 ERS1299771 ERX1851904 GENOMIC DN465033T:E10 323858000 2017-01-11 SC_RUN_21053_8#170 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788181/21053_8#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788181/21053_8#170.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#170 ERR1788157 SC_EXP_21053_8#146 406 7eba9abce2db6f2d3236d5c0010e8c5c;16224cc2ff285baf98b350e9eac833e4 1313 8f3f21505b255c108dbba696b9139f67;2992d2a237469906b29e38f3d71ccf4b SAMEA4388183 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788157/ERR1788157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788157/ERR1788157_2.fastq.gz 2915096 WGS 5a91a110-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 57003205;60285371 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788157/ERR1788157_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/007/ERR1788157/ERR1788157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788157/21053_8#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788157/21053_8#146.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/007/ERR1788157/ERR1788157_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/007/ERR1788157/ERR1788157_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788157/21053_8#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788157/21053_8#146.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84691487;4861 ERS1299632 ERX1851880 GENOMIC DN465033T:C7 364387000 2017-01-11 SC_RUN_21053_8#146 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788157/21053_8#146.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788157/21053_8#146.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#146 ERR1764047 SC_EXP_20957_7#122 421 a94443ca8d8ea81290abfc25c0492ed3;0c8ea463a2e8bf50d95853f904ccceac 1313 54579c623f68da28ccba269ad88658d0;c4433c7edbcfeb8fff92f764c1cc3590 SAMEA4394628 2016-12-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764047/ERR1764047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764047/ERR1764047_2.fastq.gz 2862626 WGS f9da01f0-589e-11e6-9a3d-3c4a9275d6c8 RANDOM 58178089;65626908 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764047/ERR1764047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR176/007/ERR1764047/ERR1764047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764047/20957_7#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764047/20957_7#122.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/007/ERR1764047/ERR1764047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR176/007/ERR1764047/ERR1764047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764047/20957_7#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR176/ERR1764047/20957_7#122.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89852962;4756 ERS1306077 ERX1829616 GENOMIC DN462612U:C4 357828250 2016-12-20 SC_RUN_20957_7#122 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764047/20957_7#122.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR176/ERR1764047/20957_7#122.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA777967 20957_7#122 ERR1438706 PHESPD0787 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/006/ERR1438706 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438706 ef213165ead8a507b41078c218672283;c2af2d38da51541e8bc184e177094598 1313 152594445 fd9a8e3a2aae60f09f11def70f0cf9fe;6d20ffc635f1c457f5fa66a306c1ff2e SAMEA4022975 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438706/ERR1438706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438706/ERR1438706_2.fastq.gz 1843765 WGS PHESPD0787 RANDOM 102300095;106322183 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 0867ba084805e6f1f510d0f9b563117f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438706/ERR1438706_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1438706/ERR1438706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438706/PHESPD0787.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438706/PHESPD0787.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438706/ERR1438706_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1438706/ERR1438706_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438706/PHESPD0787.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438706/PHESPD0787.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 108294741;112335188 ERS1194085 ERX1509084 GENOMIC 358408390 2016-06-10 PHESPD0787 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438706/PHESPD0787.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438706/PHESPD0787.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/006/ERR1438706 PHESPD0787 ERR1399914 ena-EXPERIMENT-HARVARD SCHOOL OF PUBLIC HEALTH-06-05-2016-18:31:35:818-136 150 fasp.sra.ebi.ac.uk:/vol1/err/ERR139/004/ERR1399914 ftp.sra.ebi.ac.uk/vol1/err/ERR139/004/ERR1399914 85c5f8abac1f21786354d8b39c3e9955;79159a689a637fab83804cbeb25b699e 1313 91683440 66a5a4bad2a791adccf269f7d6794158;aa2b44ab8d65419e5107ab5d17ab51ce SAMEA3952790 2016-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR139/004/ERR1399914/ERR1399914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR139/004/ERR1399914/ERR1399914_2.fastq.gz 601660 WGS 22644y09 RANDOM 58691932;63449523 FASTQ;FASTQ Streptococcus pneumoniae Non-vaccine type penicillin nonsusceptible pneumococcus 87354c2c3dd84f901c297b0a6c0b8dd5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR139/004/ERR1399914/ERR1399914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR139/004/ERR1399914/ERR1399914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR139/ERR1399914/22644y09_S20_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR139/ERR1399914/22644y09_S20_L001_R2_001.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR139/004/ERR1399914/ERR1399914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR139/004/ERR1399914/ERR1399914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR139/ERR1399914/22644y09_S20_L001_R1_001.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR139/ERR1399914/22644y09_S20_L001_R2_001.fastq.gz Illumina MiSeq PAIRED HARVARD SCHOOL OF PUBLIC HEALTH PRJEB13827 ERP015405 66153499;70433511 ERS1139924 ERX1471173 GENOMIC NVT PNSP 140977166 2016-10-31 ena-RUN-HARVARD SCHOOL OF PUBLIC HEALTH-06-05-2016-18:31:35:818-136 fasp.sra.ebi.ac.uk:/vol1/run/ERR139/ERR1399914/22644y09_S20_L001_R1_001.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR139/ERR1399914/22644y09_S20_L001_R2_001.fastq.gz ena-STUDY-HARVARD SCHOOL OF PUBLIC HEALTH-03-05-2016-03:21:14:094-128 Illumina MiSeq paired end sequencing ERA618100 ftp.sra.ebi.ac.uk/vol1/err/ERR139/004/ERR1399914 NVT PNSP ERR1438672 PHESPD0753 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438672 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438672 cee7eb2302fec5b40c01103e55b68e23;45f8d7dfe9acde2b4422515f7ddd6f08 1313 112068133 36201e87367cea4cc38ebdf04f373f89;cd81d522904571aa1939a2db0b44e687 SAMEA4022941 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438672/ERR1438672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438672/ERR1438672_2.fastq.gz 1432904 WGS PHESPD0753 RANDOM 76406809;78628276 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 780790137cd236288de99302f9248a1f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438672/ERR1438672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438672/ERR1438672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438672/PHESPD0753.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438672/PHESPD0753.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438672/ERR1438672_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438672/ERR1438672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438672/PHESPD0753.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438672/PHESPD0753.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81187388;83420937 ERS1194051 ERX1509050 GENOMIC 281836879 2016-06-10 PHESPD0753 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438672/PHESPD0753.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438672/PHESPD0753.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438672 PHESPD0753 ERR1438635 PHESPD0716 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438635 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438635 fb56175d07ae186c5f0fb0c6484bb03a;833c2a67518a6b4f0001ea43cc50e7b5 1313 143564666 31bcaca04dee853875396f6521279967;e099f6f2ce9a2fb02b4647e8e860d21b SAMEA4022904 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438635/ERR1438635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438635/ERR1438635_2.fastq.gz 1734214 WGS PHESPD0716 RANDOM 96680965;99224589 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 4dd1096338d7dc2880a92b12b110b130 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438635/ERR1438635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438635/ERR1438635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438635/PHESPD0716.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438635/PHESPD0716.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438635/ERR1438635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438635/ERR1438635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438635/PHESPD0716.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438635/PHESPD0716.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102393128;104911224 ERS1194014 ERX1509013 GENOMIC 337855186 2016-06-10 PHESPD0716 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438635/PHESPD0716.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438635/PHESPD0716.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438635 PHESPD0716 ERR1438623 PHESPD0704 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/003/ERR1438623 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438623 2e7be9ea0a3f79dc30851612291ffa54;770282c1bf12fe309b43bb4b912f9a42 1313 146820534 04e3325ca64c4f67ba9bd31eb9ecd958;bce9d22cfbb0dc715f26a06f8918ecd0 SAMEA4022892 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438623/ERR1438623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438623/ERR1438623_2.fastq.gz 1770162 WGS PHESPD0704 RANDOM 98841295;101335602 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 183bd8bc90a7a517d648ad6fba330379 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438623/ERR1438623_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/003/ERR1438623/ERR1438623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438623/PHESPD0704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438623/PHESPD0704.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438623/ERR1438623_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/003/ERR1438623/ERR1438623_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438623/PHESPD0704.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438623/PHESPD0704.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 104649219;107129547 ERS1194002 ERX1509001 GENOMIC 344818699 2016-06-10 PHESPD0704 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438623/PHESPD0704.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438623/PHESPD0704.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/003/ERR1438623 PHESPD0704 ERR1438615 PHESPD0696 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438615 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438615 a5da6a8d70946e67fcbc2bdd5b27a5bf;d69b203b4381feaa611c9a362768e5d2 1313 114660636 9dd2e7f0917c279c9bd8e68e27863d5d;ff0224a9e2084911c1cbcfd7f9743162 SAMEA4022884 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438615/ERR1438615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438615/ERR1438615_2.fastq.gz 1383133 WGS PHESPD0696 RANDOM 77038341;79234077 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b2e907d16e4e90bba10082e150c9e249 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438615/ERR1438615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438615/ERR1438615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438615/PHESPD0696.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438615/PHESPD0696.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438615/ERR1438615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438615/ERR1438615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438615/PHESPD0696.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438615/PHESPD0696.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 81731341;83894095 ERS1193994 ERX1508993 GENOMIC 269466050 2016-06-10 PHESPD0696 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438615/PHESPD0696.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438615/PHESPD0696.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438615 PHESPD0696 ERR1438598 PHESPD0679 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438598 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438598 9f284c84ff35193d0840863345d41fec;000d9ae0a9dfda125938f001ac2aae68 1313 123017601 3e075e559bf38ba7d559a4a48fcdb5d4;25e810c033acda96b331871ec20d706b SAMEA4022867 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438598/ERR1438598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438598/ERR1438598_2.fastq.gz 1486263 WGS PHESPD0679 RANDOM 82918847;85258118 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline 6daa5ed6799daaa6e03b9f19604754a5 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438598/ERR1438598_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438598/ERR1438598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438598/PHESPD0679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438598/PHESPD0679.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438598/ERR1438598_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438598/ERR1438598_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438598/PHESPD0679.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438598/PHESPD0679.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 87927364;90229188 ERS1193977 ERX1508976 GENOMIC 289560772 2016-06-10 PHESPD0679 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438598/PHESPD0679.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438598/PHESPD0679.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438598 PHESPD0679 ERR1438595 PHESPD0676 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438595 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438595 c00c2d4a29662f4c15811532046245de;62ff32bfc18b5b1aa02a43342d32a2d6 1313 124730300 0ff4afe89c63afac227d470c7fa8559b;c57b30f033f67fe5ec19f8d6e29a8da0 SAMEA4022864 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438595/ERR1438595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438595/ERR1438595_2.fastq.gz 1508447 WGS PHESPD0676 RANDOM 84096229;86261263 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a5c73e42d7ada22eea6638007b6a7475 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438595/ERR1438595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438595/ERR1438595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438595/PHESPD0676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438595/PHESPD0676.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438595/ERR1438595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438595/ERR1438595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438595/PHESPD0676.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438595/PHESPD0676.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 89142959;91283501 ERS1193974 ERX1508973 GENOMIC 294124008 2016-06-10 PHESPD0676 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438595/PHESPD0676.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438595/PHESPD0676.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438595 PHESPD0676 ERR1438568 PHESPD0649 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/008/ERR1438568 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438568 e39cb1852d28a76f21a812444ca4eaae;034421ad4ddd428a11d3513e9d64e832 1313 144635968 3fef2dd4b4a88fee86e027f37a067cfc;9e2038e1578c930c00b3a6660d9d6d0a SAMEA4022837 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438568/ERR1438568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438568/ERR1438568_2.fastq.gz 1739363 WGS PHESPD0649 RANDOM 97111274;99834572 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline a4b9b527a9eade9f7ca002ba6b3ac61f ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438568/ERR1438568_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/008/ERR1438568/ERR1438568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438568/PHESPD0649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438568/PHESPD0649.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438568/ERR1438568_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/008/ERR1438568/ERR1438568_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438568/PHESPD0649.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438568/PHESPD0649.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 102810565;105508843 ERS1193947 ERX1508946 GENOMIC 338660192 2016-06-10 PHESPD0649 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438568/PHESPD0649.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438568/PHESPD0649.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/008/ERR1438568 PHESPD0649 ERR1438522 PHESPD0603 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/002/ERR1438522 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438522 2e83e9cefbbedf566963a9e32b6260b0;c908c6b074760de450328484b8c13515 1313 109430656 d4da6a4e735973098de69c5709bfb511;50c6b3e017a49ef127c4eb27f6cc5172 SAMEA4022791 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438522/ERR1438522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438522/ERR1438522_2.fastq.gz 1321219 WGS PHESPD0603 RANDOM 73686251;75380650 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b333f3660f21774cdfa2c26b11fe90f0 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438522/ERR1438522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/002/ERR1438522/ERR1438522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438522/PHESPD0603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438522/PHESPD0603.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438522/ERR1438522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/002/ERR1438522/ERR1438522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438522/PHESPD0603.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438522/PHESPD0603.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 78144278;79822459 ERS1193901 ERX1508900 GENOMIC 257398327 2016-06-10 PHESPD0603 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438522/PHESPD0603.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438522/PHESPD0603.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/002/ERR1438522 PHESPD0603 ERR1438515 PHESPD0596 100 fasp.sra.ebi.ac.uk:/vol1/err/ERR143/005/ERR1438515 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438515 3d4a984ff3cb780359177ba97bf8cf5c;59d4ab394928a84fe34b177e1f7b210f 1313 47997360 06009aadd271daf464e83500ee06fad2;6f1f8540b84d7a7ff2d0effad26f802f SAMEA4022784 2016-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438515/ERR1438515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438515/ERR1438515_2.fastq.gz 576648 WGS PHESPD0596 RANDOM 32228174;33028108 FASTQ;FASTQ Streptococcus pneumoniae Whole Genome Sequencing of Streptococcus pneumoniae: Development, Evaluation and Verification of Targets for Serogroup and Serotype Prediction using an Automated Pipeline b36819ef0309daabd4b600fb0b405f18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438515/ERR1438515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/005/ERR1438515/ERR1438515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438515/PHESPD0596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438515/PHESPD0596.R2.fastq.gz ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438515/ERR1438515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/005/ERR1438515/ERR1438515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438515/PHESPD0596.R1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1438515/PHESPD0596.R2.fastq.gz Illumina HiSeq 2500 PAIRED PHE PRJEB14267 ERP015902 34376642;35154262 ERS1193894 ERX1508893 GENOMIC 112148945 2016-06-10 PHESPD0596 0 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438515/PHESPD0596.R1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1438515/PHESPD0596.R2.fastq.gz PneumoCaT Illumina HiSeq 2500 paired end sequencing ERA645809 ftp.sra.ebi.ac.uk/vol1/err/ERR143/005/ERR1438515 PHESPD0596 ERR1202072 SC_EXP_17870_7#2 463 cc2796b4fbd4e803c716c354b915fb1f;a786b1a5f3f4169dc7b0e87ec40b0931 1313 62653be49160613e9c7817cd24d2a61c;e2abd8888dd30b573f36eaceeea920a4 SAMEA3389372 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202072/ERR1202072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202072/ERR1202072_2.fastq.gz 3131144 WGS GPS_MW_1275_UNC-sc-2295847 RANDOM 59662923;61661597 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202072/ERR1202072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202072/ERR1202072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202072/17870_7#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202072/17870_7#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202072/ERR1202072_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202072/ERR1202072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202072/17870_7#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202072/17870_7#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91410904;5212 ERS725475 ERX1274314 GENOMIC 14978286 391393000 2016-01-12 SC_RUN_17870_7#2 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202072/17870_7#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202072/17870_7#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#2 ERR870232 SC_EXP_15531_6#40 212 721168af3b718fff6fb4e280de45c292;9de23ddcb5c345e414183e5ce23712c5 1313 1e94728864ec9541eb9c94085dd49093;0505d66a901f7ca1213c05192edac6be SAMEA3172983 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870232/ERR870232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870232/ERR870232_2.fastq.gz 4023374 WGS GPS_GM_1127-sc-2190542 RANDOM 153194513;144315607 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870232/ERR870232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870232/ERR870232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870232/15531_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870232/15531_6#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870232/ERR870232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870232/ERR870232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870232/15531_6#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870232/15531_6#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247022224;6594 ERS627226 ERX949833 GENOMIC 12870104 402337400 2015-05-06 SC_RUN_15531_6#40 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870232/15531_6#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870232/15531_6#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#40 ERR870206 SC_EXP_15531_6#14 212 77e9f4ed92116205f7d4f2103be198e0;b29024d03327eb0dedf37465aaaa1792 1313 c0b9876d7997b8b52814f010ffaafaef;9613b4aab78e7143c7ba32b6678b46d4 SAMEA3172956 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870206/ERR870206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870206/ERR870206_2.fastq.gz 4135584 WGS GPS_GM_1100-sc-2190515 RANDOM 157475047;149016708 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870206/ERR870206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870206/ERR870206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870206/15531_6#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870206/15531_6#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870206/ERR870206_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870206/ERR870206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870206/15531_6#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870206/15531_6#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253856627;6744 ERS627199 ERX949807 GENOMIC 12870077 413558400 2015-05-06 SC_RUN_15531_6#14 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870206/15531_6#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870206/15531_6#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#14 ERR870244 SC_EXP_15531_6#52 212 d97a968d808388158625a97fbf7bc205;f1cd8504b9643cb5763753fde917238b 1313 ee8729be4808e176da0877927c047165;1998796bb1e1a5fc42afb79502cbf1c2 SAMEA3172995 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870244/ERR870244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870244/ERR870244_2.fastq.gz 4158402 WGS GPS_GM_1139-sc-2190554 RANDOM 158051864;148991145 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870244/ERR870244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870244/ERR870244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870244/15531_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870244/15531_6#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870244/ERR870244_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870244/ERR870244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870244/15531_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870244/15531_6#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255336177;6781 ERS627238 ERX949845 GENOMIC 12870058 415840200 2015-05-06 SC_RUN_15531_6#52 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870244/15531_6#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870244/15531_6#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#52 ERR870261 SC_EXP_15531_6#69 212 e10530bec34748714e77c17c4bd14ebd;d44a0c0edc9b89225ba23293895eb6f8 1313 edcbc3fae97a5b4f5429178ec534aedd;85d5a142ba1b6155dccf588218440d8d SAMEA3173012 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870261/ERR870261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870261/ERR870261_2.fastq.gz 4705240 WGS GPS_GM_1156-sc-2190571 RANDOM 178494832;168264081 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870261/ERR870261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870261/ERR870261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870261/15531_6#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870261/15531_6#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870261/ERR870261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870261/ERR870261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870261/15531_6#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870261/15531_6#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 289727789;7684 ERS627255 ERX949862 GENOMIC 12870072 470524000 2015-05-06 SC_RUN_15531_6#69 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870261/15531_6#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870261/15531_6#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#69 ERR774510 SC_EXP_14936_4#37 220 804ebc0f09c4b8197d4c942bd22e8f6e;b735eb84903dd6136491fa452f01abb0 1313 18fb1a49f82d1f5df0d05da0ea2a3eb2;cc5b2f47be3a7285536bf80737d7ee1c SAMEA2814342 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774510/ERR774510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774510/ERR774510_2.fastq.gz 4253418 WGS GPS_ZA_2554-sc-2138136 RANDOM 155680134;157850732 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774510/ERR774510_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774510/ERR774510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774510/14936_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774510/14936_4#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774510/ERR774510_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774510/ERR774510_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774510/14936_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774510/14936_4#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260920463;6894 ERS566710 ERX717389 GENOMIC 12347970 425341800 2015-03-03 SC_RUN_14936_4#37 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774510/14936_4#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774510/14936_4#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#37 ERR750849 SC_EXP_14723_2#26 226 7ad19a1e50fe8b61ddbbb2b42574d315;582935ebdc93249b6edb79370fe9c8a0 1313 6dabea271eb257b8e51a9beb5f371652;49a55e1a0860316b8e22c47957ac450d SAMEA2797099 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750849/ERR750849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750849/ERR750849_2.fastq.gz 5722190 WGS GPS_US_PATH3649-sc-2139126 RANDOM 213343350;216810742 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750849/ERR750849_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750849/ERR750849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750849/14723_2#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750849/14723_2#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750849/ERR750849_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750849/ERR750849_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750849/14723_2#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750849/14723_2#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 355900803;9097 ERS558710 ERX694531 GENOMIC 12133595 572219000 2015-02-03 SC_RUN_14723_2#26 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750849/14723_2#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750849/14723_2#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#26 ERR742674 SC_EXP_14673_4#79 209 bac9e054e4c26b37059463a121c71eee;ce703ca37972b7ca75487121429106bb 1313 1db0012dc33768ba1348499ae2842f73;bc1425c9770664dd1013d262c5e4e24b SAMEA2796772 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742674/ERR742674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742674/ERR742674_2.fastq.gz 4308726 WGS GPS_US_PATH352-sc-2138780 RANDOM 140579649;145665139 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742674/ERR742674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742674/ERR742674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742674/14673_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742674/14673_4#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742674/ERR742674_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742674/ERR742674_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742674/14673_4#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742674/14673_4#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232275173;6869 ERS558383 ERX686357 GENOMIC 12062050 430872600 2015-01-27 SC_RUN_14673_4#79 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742674/14673_4#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742674/14673_4#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#79 ERR730820 SC_EXP_14566_5#60 233 11a7d0e641522118d1c9cbaa20b1ab4b;3f4015180cf988305521da5c6ea4dfc4 1313 dfab280225c71e75736ba106f2ffa044;eed4c5ca5536a1982a6b46f036c648d1 SAMEA2658773 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730820/ERR730820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730820/ERR730820_2.fastq.gz 4017470 WGS GPS_ZA_1817-sc-2021382 RANDOM 115101473;116901325 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730820/ERR730820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730820/ERR730820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730820/14566_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730820/14566_5#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730820/ERR730820_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730820/ERR730820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730820/14566_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730820/14566_5#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188375751;6578 ERS508801 ERX674766 GENOMIC 11838968 401747000 2015-01-14 SC_RUN_14566_5#60 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730820/14566_5#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730820/14566_5#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#60 ERR730526 SC_EXP_14555_3#8 227 55ea1f393743b430a99deca1a20d9cda;838b7dff0727a6adfce1dda620c14ae7 1313 58d70e00d5ae54010d3ee869f2ea745f;6dbe376a046f50516d23026f0e917474 SAMEA2658276 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730526/ERR730526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730526/ERR730526_2.fastq.gz 6313528 WGS GPS_ZA_1290-sc-2020881 RANDOM 203953074;209550492 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730526/ERR730526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730526/ERR730526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730526/14555_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730526/14555_3#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730526/ERR730526_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730526/ERR730526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730526/14555_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730526/14555_3#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 341346574;10397 ERS508304 ERX674472 GENOMIC 11820766 631352800 2015-01-14 SC_RUN_14555_3#8 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730526/14555_3#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730526/14555_3#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#8 ERR774017 SC_EXP_14913_4#15 230 848792a2a9f98d879732f9e04637d82e;eaec22f0557a8edd20c236c6ff8876b0 1313 cabb6e8ec34f5ab1c68d434da407a3e7;491d361897a0e68bc21c7d56d3c70795 SAMEA2814020 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774017/ERR774017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774017/ERR774017_2.fastq.gz 4754880 WGS GPS_ZA_2342-sc-2022504 RANDOM 158486307;165701678 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774017/ERR774017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774017/ERR774017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774017/14913_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774017/14913_4#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774017/ERR774017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774017/ERR774017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774017/14913_4#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774017/14913_4#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265773909;7631 ERS566388 ERX716896 GENOMIC 12396054 475488000 2015-03-03 SC_RUN_14913_4#15 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774017/14913_4#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774017/14913_4#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#15 ERR714377 SC_EXP_14410_7#20 220 b26d72ab856f3a32b3f7415db0e65841;0a51e4dd8199d91e14e2bd0d3159123e 1313 4b8042910bca31f9a37b6fde83494f30;cfd16dd5362ff8ff0e1023996f6b2a36 SAMEA2627340 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714377/ERR714377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714377/ERR714377_2.fastq.gz 5166816 WGS GPS_GM_0453-sc-2003278 RANDOM 181207326;182942302 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714377/ERR714377_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714377/ERR714377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714377/14410_7#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714377/14410_7#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714377/ERR714377_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714377/ERR714377_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714377/14410_7#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714377/14410_7#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 300555960;8482 ERS497239 ERX658299 GENOMIC 11883187 516681600 2015-01-08 SC_RUN_14410_7#20 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714377/14410_7#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714377/14410_7#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#20 ERR714341 SC_EXP_14410_6#69 230 5126701429e485c94a133cad5a4bfad6;2d7714454d790daf7ef9f01fd1cb53e6 1313 8dc03f5bbb9dc2aea307dc797f497075;ad83919de9e780edd31ecfba074d5ac8 SAMEA2627512 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714341/ERR714341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714341/ERR714341_2.fastq.gz 5595606 WGS GPS_GM_0417-sc-2003464 RANDOM 194857570;195953689 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714341/ERR714341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714341/ERR714341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714341/14410_6#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714341/14410_6#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714341/ERR714341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714341/ERR714341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714341/14410_6#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714341/14410_6#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 323652181;9213 ERS497411 ERX658263 GENOMIC 11883310 559560600 2015-01-08 SC_RUN_14410_6#69 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714341/14410_6#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714341/14410_6#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#69 ERR714714 SC_EXP_14412_2#82 223 c29c934df2dbf9fb81e9b3eb33495148;19ca2d29afcc226b4421ef2abc7c1077 1313 610d504ce24c791001fc526269ebaf52;a635de93cfc6b15a6bdf70756de92229 SAMEA2658896 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714714/ERR714714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714714/ERR714714_2.fastq.gz 4148362 WGS GPS_ZA_1934-sc-2021533 RANDOM 144949326;148679132 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714714/ERR714714_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714714/ERR714714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714714/14412_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714714/14412_2#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714714/ERR714714_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714714/ERR714714_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714714/14412_2#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714714/14412_2#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241618092;6771 ERS508924 ERX658636 GENOMIC 11882977 414836200 2015-01-08 SC_RUN_14412_2#82 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714714/14412_2#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714714/14412_2#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#82 ERR714455 SC_EXP_14410_8#13 224 e9b7f8cda1c1949af625262d0cf6f1ec;175e018771c50cf8546aca61f1a0eb87 1313 5d1bbc5e460c4e3acd2a2fd91910cfd2;73b237be5fc48e4d27559773579be4b9 SAMEA2658340 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714455/ERR714455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714455/ERR714455_2.fastq.gz 5091850 WGS GPS_ZA_1485-sc-2020945 RANDOM 178308511;179044044 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714455/ERR714455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714455/ERR714455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714455/14410_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714455/14410_8#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714455/ERR714455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714455/ERR714455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714455/14410_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714455/14410_8#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294507977;8355 ERS508368 ERX658377 GENOMIC 11883101 509185000 2015-01-08 SC_RUN_14410_8#13 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714455/14410_8#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714455/14410_8#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_8#13 ERR657030 SC_EXP_13681_1#42 233 c5bdb7118ce88917abd34a4561b8d785;0e9758c6e62b7f2c2a0e5e374fc5e70a 1313 1b4ed3a9bbd3b85cd1e60f337c415a6d;b8efc1c2ab2ba784329a612b3a448805 SAMEA2626877 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657030/ERR657030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657030/ERR657030_2.fastq.gz 2297722 WGS UOS_7186-sc-1922717 RANDOM 63487615;65290457 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657030/ERR657030_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657030/ERR657030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657030/13681_1#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657030/13681_1#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657030/ERR657030_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657030/ERR657030_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657030/13681_1#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657030/13681_1#42.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 101875010;3841 ERS496787 ERX613353 GENOMIC 11120437 229772200 2014-10-15 SC_RUN_13681_1#42 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657030/13681_1#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657030/13681_1#42.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#42 ERR657025 SC_EXP_13681_1#37 233 7757845682b921387adf90cfe7ce8f10;343adc32948ad335ddcb4dc15e014944 1313 b3bbfcdadfaaba47b30db5c6bfb1cdad;bded3c68ad37a000eb341dd56f93198b SAMEA2626872 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657025/ERR657025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657025/ERR657025_2.fastq.gz 2549730 WGS UOS_7175-sc-1922712 RANDOM 71951710;74569301 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657025/ERR657025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657025/ERR657025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657025/13681_1#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657025/13681_1#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657025/ERR657025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657025/ERR657025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657025/13681_1#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657025/13681_1#37.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 115863272;4185 ERS496782 ERX613348 GENOMIC 11120472 254973000 2014-10-15 SC_RUN_13681_1#37 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657025/13681_1#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657025/13681_1#37.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#37 ERR657019 SC_EXP_13681_1#31 233 32015089d30a6ad7f310173304417306;9e28686c164c67db715b45a6ba0974bb 1313 f487bac481dd145a30102192edbcf6a9;6e02a3308779444f848081721fc25698 SAMEA2626866 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657019/ERR657019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657019/ERR657019_2.fastq.gz 2866172 WGS UOS_7144-sc-1922706 RANDOM 76753512;79558899 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657019/ERR657019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657019/ERR657019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657019/13681_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657019/13681_1#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657019/ERR657019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657019/ERR657019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657019/13681_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657019/13681_1#31.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 122975478;4830 ERS496776 ERX613342 GENOMIC 11120495 286617200 2014-10-15 SC_RUN_13681_1#31 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657019/13681_1#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657019/13681_1#31.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#31 ERR657124 SC_EXP_13681_2#42 235 420683ed0ec69aef5f72eb415221ba8c;ab7b3a766e64c05a50c623fec32c9941 1313 5fe8b4df1938ebac6341dda0f4d65446;5c26c571ece3a76509c827ccbc030a99 SAMEA2626877 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657124/ERR657124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657124/ERR657124_2.fastq.gz 2241346 WGS UOS_7186-sc-1922717 RANDOM 61978463;63110623 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657124/ERR657124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657124/ERR657124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657124/13681_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657124/13681_2#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657124/ERR657124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657124/ERR657124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657124/13681_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657124/13681_2#42.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 98871278;3749 ERS496787 ERX613447 GENOMIC 11120437 224134600 2014-10-15 SC_RUN_13681_2#42 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657124/13681_2#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657124/13681_2#42.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#42 ERR657119 SC_EXP_13681_2#37 235 45e8fe1c44b266b4f67a8d597407d50f;0cdcb82cd4cb85debec4f267dbcd7f25 1313 3c45405b377dcde822868aa890070a8b;63bf313870dc4a3f79119826f8d219b9 SAMEA2626872 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657119/ERR657119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657119/ERR657119_2.fastq.gz 2503744 WGS UOS_7175-sc-1922712 RANDOM 70696098;72475064 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657119/ERR657119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657119/ERR657119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657119/13681_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657119/13681_2#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657119/ERR657119_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657119/ERR657119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657119/13681_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657119/13681_2#37.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 113077250;4121 ERS496782 ERX613442 GENOMIC 11120472 250374400 2014-10-15 SC_RUN_13681_2#37 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657119/13681_2#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657119/13681_2#37.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#37 ERR657113 SC_EXP_13681_2#31 235 49f89064e387524d0b9c852b34ed244e;044e0f666ba4b0c88b2f2635ca99e307 1313 5b2f23b441bad1f015ec14098b287234;7ee2aba4e6638a25fe74411b970f3f6d SAMEA2626866 2014-10-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657113/ERR657113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657113/ERR657113_2.fastq.gz 2797892 WGS UOS_7144-sc-1922706 RANDOM 75021412;76909609 CRAM;CRAI Streptococcus pneumoniae Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657113/ERR657113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR657/ERR657113/ERR657113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657113/13681_2#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657113/13681_2#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657113/ERR657113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR657/ERR657113/ERR657113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657113/13681_2#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR657/ERR657113/13681_2#31.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB6332 ERP005855 119339311;4713 ERS496776 ERX613436 GENOMIC 11120495 279789200 2014-10-15 SC_RUN_13681_2#31 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657113/13681_2#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR657/ERR657113/13681_2#31.cram.crai Identifying_pneumococcal_genetic_determinants_for_progression_from_colonisation_to_serious_disease-sc-3063 Illumina HiSeq 2500 paired end sequencing ERA370021 13681_1#31 ERR646610 SC_EXP_13470_1#81 235 297770f9c83705c4951b73aca83ff519;813b4d126ed189fc0f72888905bde59c 1313 8c2eec484d90fcc97067de0762a494cd;cbb50366e398f2fd587a23ff24c90189 SAMEA2554384 2014-10-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646610/ERR646610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646610/ERR646610_2.fastq.gz 5554752 WGS GPS_ZA_1273-sc-1951423 RANDOM 187387409;189568562 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646610/ERR646610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646610/ERR646610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646610/13470_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646610/13470_1#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646610/ERR646610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646610/ERR646610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646610/13470_1#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646610/13470_1#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 314535344;9163 ERS464885 ERX603046 GENOMIC 10615512 555475200 2014-10-01 SC_RUN_13470_1#81 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646610/13470_1#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646610/13470_1#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA363825 13470_1#81 ERR501617 SC_EXP_12290_3#77 200 72b9cec4e0ea4943d8c1445dd3a4bea3;ec0c70f5b2bebc7733496bffad0a21cc 1313 565af3447608534d144af8afb0967841;67dfdf46072409fb8c1dc0209c2b6b65 SAMEA2341352 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501617/ERR501617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501617/ERR501617_2.fastq.gz 3580292 WGS A56847-sc-1811429 RANDOM 107628378;112852771 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501617/ERR501617_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501617/ERR501617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501617/12290_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501617/12290_3#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501617/ERR501617_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501617/ERR501617_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501617/12290_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501617/12290_3#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 179622795;5899 ERS399023 ERX466974 GENOMIC 9467237 358029200 2014-05-12 SC_RUN_12290_3#77 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501617/12290_3#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501617/12290_3#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#77 ERR600446 SC_EXP_13415_5#42 246 8a6c45554f875bb3ab66e053eb61b7ea;405d95903f25436b82eeadde1bb0d2f2 1313 2ae30d52fe1d1ec2426d39981cbf3a06;b9f453e205ebf2d3769eab2e3a021723 SAMEA2553914 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600446/ERR600446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600446/ERR600446_2.fastq.gz 3894270 WGS GPS_ZA_850-sc-1950996 RANDOM 127225525;133437551 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600446/ERR600446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600446/ERR600446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600446/13415_5#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600446/13415_5#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600446/ERR600446_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600446/ERR600446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600446/13415_5#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600446/13415_5#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 213494267;6475 ERS464415 ERX557275 GENOMIC 10646207 389427000 2014-09-16 SC_RUN_13415_5#42 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600446/13415_5#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600446/13415_5#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#42 ERR064079 SC_EXP_6938_6#13 230 46113b78dea3ed2c8ced3bdb8de5b4e9 1313 519d316df9244265d27253e98ee3ad29;4a1dfc8024a133faaa7c62e513593441 SAMEA1029058 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064079/ERR064079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064079/ERR064079_2.fastq.gz 5561795 WGS SMRU2677-sc-2011-01-27-1062890 RANDOM 387110678;399039827 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064079/ERR064079_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064079/ERR064079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064079/6938_6#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064079/ERR064079_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064079/ERR064079_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064079/6938_6#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 991780038 ERS022187 ERX042052 GENOMIC 3651697 834269250 2012-03-19 SC_RUN_6938_6#13 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064079/6938_6#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR273509 SC_EXP_6730_4#6 231 dd99c7e270829c1e87426349f79d2bad 1313 d1d67ad0b698ea79678fd4660e9a22c0;ef5a42d8fdc3ffe4c4e122f7d0d004ff SAMEA1025108 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273509/ERR273509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273509/ERR273509_2.fastq.gz 2263360 WGS SMRU630-sc-2011-01-27-1060819 RANDOM 103094030;105771691 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273509/ERR273509_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273509/ERR273509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273509/6730_4#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273509/ERR273509_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273509/ERR273509_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273509/6730_4#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 310167031 ERS020140 ERX247785 GENOMIC 3100108 339504000 2013-05-13 SC_RUN_6730_4#6 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273509/6730_4#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR048205 SC_EXP_6631_7#24 213 c7b832bd16eca93366099d45e8822bfa 1313 3970c73af51041ebfec2ca12df1b09de;f5f7ff4390e80284b09e227ca822407d SAMEA1023891 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048205/ERR048205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048205/ERR048205_2.fastq.gz 5542205 WGS SMRU528-sc-2011-01-27-1060717 RANDOM 300436098;293485139 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048205/ERR048205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048205/ERR048205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048205/6631_7#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048205/ERR048205_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048205/ERR048205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048205/6631_7#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 740341039 ERS019686 ERX025268 GENOMIC 3037847 831330750 2011-10-11 SC_RUN_6631_7#24 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048205/6631_7#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR051535 SC_EXP_6730_8#5 229 279e702199d9539a08fc73413b513914 1313 a08abde9239532859049855b64cc14d0;3d748460cf801355d27305a03b8cbabf SAMEA1025066 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051535/ERR051535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051535/ERR051535_2.fastq.gz 3502924 WGS SMRU725-sc-2011-01-27-1060914 RANDOM 185609151;191047603 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051535/ERR051535_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051535/ERR051535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051535/6730_8#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051535/ERR051535_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051535/ERR051535_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051535/6730_8#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 478419822 ERS020235 ERX028583 GENOMIC 3100227 525438600 2011-11-02 SC_RUN_6730_8#5 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051535/6730_8#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051593 SC_EXP_6731_3#15 214 fb961b23d24dcc6b3c08cd8d6d61ce3c 1313 06de1e8f3ef4652d277b89f8749478b3;f2f9afa01c75bed2104f0d4025e414a8 SAMEA1024914 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051593/ERR051593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051593/ERR051593_2.fastq.gz 3868089 WGS SMRU1047-sc-2011-01-27-1061260 RANDOM 221346029;230453940 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051593/ERR051593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051593/ERR051593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051593/6731_3#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051593/ERR051593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051593/ERR051593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051593/6731_3#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 572480003 ERS020557 ERX028641 GENOMIC 3246247 580213350 2011-11-02 SC_RUN_6731_3#15 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051593/6731_3#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051472 SC_EXP_6730_5#14 234 277f48ac5d30bd6aa9098448f40685a5 1313 90aa4db26581a55c5922b0abd951e637;125a18f51fc84281f3fe115de256a91e SAMEA1024750 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051472/ERR051472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051472/ERR051472_2.fastq.gz 3725669 WGS SMRU662-sc-2011-01-27-1060851 RANDOM 216653689;228420003 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051472/ERR051472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051472/ERR051472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051472/6730_5#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051472/ERR051472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051472/ERR051472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051472/6730_5#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 560255353 ERS020172 ERX028520 GENOMIC 3100163 558850350 2011-11-02 SC_RUN_6730_5#14 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051472/6730_5#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR057740 SC_EXP_6791_6#6 233 6aa326f57fead42f0343fbc0d8a35eb5 1313 5173a944b8829221aa332c84c0f2081e;0eb73e43901bf637938d4e36ae8fa9bb SAMEA1025108 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057740/ERR057740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057740/ERR057740_2.fastq.gz 3272417 WGS SMRU630-sc-2011-01-27-1060819 RANDOM 197221585;194628290 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057740/ERR057740_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057740/ERR057740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057740/6791_6#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057740/ERR057740_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057740/ERR057740_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057740/6791_6#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 513668009 ERS020140 ERX035586 GENOMIC 3100108 490862550 2011-12-05 SC_RUN_6791_6#6 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057740/6791_6#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056895 SC_EXP_6805_7#21 233 3cb85b3cd6b4f830a9b006e9dc4a9467 1313 59c7144db409d950fe126cd5ce06ea28;a4aa716eeeefefd5120080e1937cbf48 SAMEA1026202 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056895/ERR056895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056895/ERR056895_2.fastq.gz 3759574 WGS SMRU1750-sc-2011-01-27-1061963 RANDOM 179422813;186238912 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056895/ERR056895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056895/ERR056895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056895/6805_7#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056895/ERR056895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056895/ERR056895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056895/6805_7#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 465750009 ERS021260 ERX034739 GENOMIC 3481253 563936100 2012-03-22 SC_RUN_6805_7#21 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056895/6805_7#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056878 SC_EXP_6805_7#4 233 8190dac48d050ca3f9f149f2d0eb3d61 1313 8ce9d9a0960a37bdfcbc5df0ed893fcc;efacde859133c2eff794409d12817986 SAMEA1026118 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056878/ERR056878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056878/ERR056878_2.fastq.gz 4791994 WGS SMRU1732-sc-2011-01-27-1061945 RANDOM 223485969;232877855 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056878/ERR056878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056878/ERR056878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056878/6805_7#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056878/ERR056878_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056878/ERR056878_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056878/6805_7#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 578292966 ERS021242 ERX034722 GENOMIC 3481236 718799100 2012-03-22 SC_RUN_6805_7#4 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056878/6805_7#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR084295 SC_EXP_7068_4#21 228 88b250bb148ffcb33bcee0c005752d7c 1313 ae29c777fb1d948147c909ab26263e54;477abd00316364b6cc8e750b496aca79 SAMEA1029412 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084295/ERR084295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084295/ERR084295_2.fastq.gz 4005549 WGS SMRU3141-sc-2011-01-27-1063354 RANDOM 249003088;251418177 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084295/ERR084295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084295/ERR084295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084295/7068_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084295/ERR084295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084295/ERR084295_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084295/7068_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 638608000 ERS022651 ERX062061 GENOMIC 3910176 600832350 2012-02-07 SC_RUN_7068_4#21 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084295/7068_4#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR052618 SC_EXP_6714_7#17 225 4db9e9dacc4965c61e801135ad021d6c 1313 689a5c111db33d9ff17b00b2844a2434;054abc857f8ca52f74cae58f3945d93b SAMEA1024609 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052618/ERR052618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052618/ERR052618_2.fastq.gz 6629773 WGS SMRU761-sc-2011-01-27-1060950 RANDOM 367810129;374280757 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052618/ERR052618_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052618/ERR052618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052618/6714_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052618/ERR052618_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052618/ERR052618_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052618/6714_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 960106535 ERS020271 ERX029666 GENOMIC 3152270 994465950 2011-11-07 SC_RUN_6714_7#17 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052618/6714_7#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR046145 SC_EXP_6512_5#2 242 70f4ccd5eda3ee299844962ee3e529c0 1313 98cc3bf5eec954562c3308de38b1face;ab970cf57c65994d7d10431a52ccb549 SAMEA1026535 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046145/ERR046145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046145/ERR046145_2.fastq.gz 7162088 WGS UoS4011-sc-2011-02-14-1078374 RANDOM 376912805;374400289 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046145/ERR046145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046145/ERR046145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046145/6512_5#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046145/ERR046145_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046145/ERR046145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046145/6512_5#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 952954936 ERS023320 ERX023207 GENOMIC 2735023 1074313200 2011-09-20 SC_RUN_6512_5#2 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046145/6512_5#2.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_5#2 ERR039616 SC_EXP_6259_7#9 201 0564c5bd76d9b7f1e301fbc5c28d01fc 1313 b4daba746319081d8fcc47437b6781f6;b85f7287912544e9a38c47d2e6498c4b SAMEA974675 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039616/ERR039616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039616/ERR039616_2.fastq.gz 3547175 WGS SMRU57-sc-2011-01-27-1026482 RANDOM 191548378;202104662 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039616/ERR039616_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039616/ERR039616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039616/6259_7#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039616/ERR039616_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039616/ERR039616_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039616/6259_7#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 490690993 ERS019215 ERX016789 GENOMIC 2590961 532076250 2011-07-27 SC_RUN_6259_7#9 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039616/6259_7#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2089729 SC_EXP_22027_1#109 467 2e4e94348d32c7a6b0ea90900642580e;80335a29c89b469f20a9feacb2e8a6e9 1313 78102b25c1121828c0e5dce313b3cf66;f1d44e22d27b228ed4843419731fa583 SAMEA104155084 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089729/ERR2089729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089729/ERR2089729_2.fastq.gz 2522894 WGS 91a70f50-c37a-11e6-b158-3c4a9275d6c8 RANDOM 47389226;51752524 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089729/ERR2089729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089729/ERR2089729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089729/22027_1#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089729/22027_1#109.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089729/ERR2089729_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089729/ERR2089729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089729/22027_1#109.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089729/22027_1#109.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70026429;4217 ERS1814102 ERX2146523 GENOMIC DN477278F:E3 315361750 2017-08-08 SC_RUN_22027_1#109 89 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089729/22027_1#109.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089729/22027_1#109.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#109 ERR1836940 SC_EXP_21485_4#2 449 6d3479fdaeb6acb74145dc5030b25e3e;0efddf30074722b3688678306ac89261 1313 20bb0d42052647bc66c375a39274f542;5e85cc608f58c0a16b5bef9c8d631d8e SAMEA4388113 2017-02-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/000/ERR1836940/ERR1836940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/000/ERR1836940/ERR1836940_2.fastq.gz 12966722 WGS 4a45c130-5a14-11e6-af69-3c4a9275d6c8 RANDOM 234629868;253130991 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/000/ERR1836940/ERR1836940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR183/000/ERR1836940/ERR1836940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836940/21485_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836940/21485_4#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR183/000/ERR1836940/ERR1836940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR183/000/ERR1836940/ERR1836940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836940/21485_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR183/ERR1836940/21485_4#2.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 370027261;20556 ERS1299562 ERX1898915 GENOMIC DN469131N:E1 1620840250 2017-02-14 SC_RUN_21485_4#2 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR183/ERR1836940/21485_4#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR183/ERR1836940/21485_4#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA812889 21485_4#2 ERR1788155 SC_EXP_21053_8#144 393 380b2a8149d1c43c8a255c2cc5aabc9e;7a420e2df3620708dd8129ad55b786fa 1313 4a38a3202b050a63f55ff0ff5eea5f2f;052725e9c8c6c294e4d2ae2ea95e11bf SAMEA4388437 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788155/ERR1788155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788155/ERR1788155_2.fastq.gz 3816520 WGS 5a819b80-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 70940741;74832337 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788155/ERR1788155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788155/ERR1788155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788155/21053_8#144.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788155/21053_8#144.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788155/ERR1788155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788155/ERR1788155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788155/21053_8#144.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788155/21053_8#144.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105161877;6334 ERS1299886 ERX1851878 GENOMIC DN465033T:A7 477065000 2017-01-11 SC_RUN_21053_8#144 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788155/21053_8#144.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788155/21053_8#144.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#144 ERR2089700 SC_EXP_22027_1#80 465 4b7fc8f117fac383dfee9d1bef2b4f99;10b9f6c00a3b983300ac4b6ec0ce8359 1313 997c7b5d9839f026e0c4595118a78091;f7f8a2206ff458c59c1a4704c7b0611e SAMEA104154965 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089700/ERR2089700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089700/ERR2089700_2.fastq.gz 3651258 WGS 86a84560-c37a-11e6-b158-3c4a9275d6c8 RANDOM 67205674;69843770 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089700/ERR2089700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089700/ERR2089700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089700/22027_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089700/22027_1#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089700/ERR2089700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089700/ERR2089700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089700/22027_1#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089700/22027_1#80.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96412401;6004 ERS1813983 ERX2146494 GENOMIC DN477277E:H10 456407250 2017-08-08 SC_RUN_22027_1#80 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089700/22027_1#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089700/22027_1#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#80 ERR1214607 SC_EXP_18090_2#99 454 d7aad32a6c14b6af7126d0fdc9ec4417;ea88d63414982abdc7b4dcae8b17846e 1313 a38f16e663f8d713e45a83d7128b2e14;f46a7154f5c4c7c0501f85b3b85f419b SAMEA3431549 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214607/ERR1214607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214607/ERR1214607_2.fastq.gz 3685178 WGS GPS_HK_102-sc-2296723 RANDOM 69649938;77821347 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214607/ERR1214607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214607/ERR1214607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214607/18090_2#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214607/18090_2#99.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/007/ERR1214607/ERR1214607_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/007/ERR1214607/ERR1214607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214607/18090_2#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214607/18090_2#99.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105448988;6127 ERS740834 ERX1286820 GENOMIC 15080072 460647250 2016-01-19 SC_RUN_18090_2#99 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214607/18090_2#99.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214607/18090_2#99.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#99 ERR1214606 SC_EXP_18090_2#98 454 06b91a19eb27b0823038e240d6cefb16;7dd33365e1d58ad9671038349a2ca919 1313 b86daa9d39fb03b74f57fa699e803be6;3787c6729576fc0fddec6fae0e316e0d SAMEA3431547 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214606/ERR1214606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214606/ERR1214606_2.fastq.gz 3655726 WGS GPS_HK_101-sc-2296721 RANDOM 70923163;76111872 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214606/ERR1214606_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214606/ERR1214606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214606/18090_2#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214606/18090_2#98.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/006/ERR1214606/ERR1214606_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/006/ERR1214606/ERR1214606_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214606/18090_2#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214606/18090_2#98.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105370266;6080 ERS740832 ERX1286819 GENOMIC 15080060 456965750 2016-01-19 SC_RUN_18090_2#98 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214606/18090_2#98.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214606/18090_2#98.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#98 ERR1214446 SC_EXP_18090_1#126 448 54c8f324277410ed02aa927dbfb38827;4f32d5eb5abf599d8c5b04cc3d97981a 1313 e3eff60e51b70a57c6667bad09ed5eb6;23fadd62768dd074b4e4de097a08846d SAMEA3431413 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214446/ERR1214446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214446/ERR1214446_2.fastq.gz 2465022 WGS GPS_US_PATH4027-sc-2296587 RANDOM 48078930;54074096 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214446/ERR1214446_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/006/ERR1214446/ERR1214446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214446/18090_1#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214446/18090_1#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/006/ERR1214446/ERR1214446_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/006/ERR1214446/ERR1214446_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214446/18090_1#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214446/18090_1#126.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72774086;4195 ERS740698 ERX1286659 GENOMIC 15034795 308127750 2016-01-19 SC_RUN_18090_1#126 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214446/18090_1#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214446/18090_1#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#126 ERR774345 SC_EXP_14913_7#61 228 b7cd6e60bbe8b6520f3f7d6c8767cb31;3a4f4f1f6520673ee08bbc62c74f2d41 1313 a8b6ea967e8205f23d4746218bdc2125;c54d9d03c215f9018b92cb98bd1317ae SAMEA2814271 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774345/ERR774345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774345/ERR774345_2.fastq.gz 5006440 WGS GPS_ZA_2483-sc-2022798 RANDOM 166754939;175548067 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774345/ERR774345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774345/ERR774345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774345/14913_7#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774345/14913_7#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774345/ERR774345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774345/ERR774345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774345/14913_7#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774345/14913_7#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280272541;8037 ERS566639 ERX717224 GENOMIC 12357976 500644000 2015-03-03 SC_RUN_14913_7#61 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774345/14913_7#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774345/14913_7#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#61 ERR774064 SC_EXP_14913_4#62 230 4a650e0263d504f6bde52fb416de00ef;56afebbbe09fd6311fb359c10cd26132 1313 1512166ae7dc3a583ea3ae63884a0915;21c1c5c5d64c35cfaab1e978bb590e1c SAMEA2814160 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774064/ERR774064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774064/ERR774064_2.fastq.gz 5043682 WGS GPS_ZA_2389-sc-2022645 RANDOM 166555318;175631589 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774064/ERR774064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774064/ERR774064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774064/14913_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774064/14913_4#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774064/ERR774064_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774064/ERR774064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774064/14913_4#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774064/14913_4#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281211071;8198 ERS566528 ERX716943 GENOMIC 12396048 504368200 2015-03-03 SC_RUN_14913_4#62 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774064/14913_4#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774064/14913_4#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#62 ERR774262 SC_EXP_14913_6#73 223 e7ccc91158af6ea003975ded1eb54875;bcd6247846ce93c3ebbb917ba85894ef 1313 32f13cbf9a9262aa489595663f485d17;e0ea34a32b47ac2112f3e641c14de946 SAMEA2814568 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774262/ERR774262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774262/ERR774262_2.fastq.gz 4375702 WGS GPS_ZA_2765-sc-2138364 RANDOM 134895471;141459311 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774262/ERR774262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774262/ERR774262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774262/14913_6#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774262/14913_6#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774262/ERR774262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774262/ERR774262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774262/14913_6#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774262/14913_6#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222930877;7087 ERS566936 ERX717141 GENOMIC 12334805 437570200 2015-03-03 SC_RUN_14913_6#73 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774262/14913_6#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774262/14913_6#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_6#73 ERR774162 SC_EXP_14913_5#67 225 ccd5075dca54b551b623b26e68c12b5e;ce75b55487b0688e75762b7f2e3d2a5e 1313 e9f276a368089bf2f3c1c6a1db8fb2e3;9f2bb365b46a7b26d0875bd1881447b2 SAMEA2814467 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774162/ERR774162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774162/ERR774162_2.fastq.gz 5178080 WGS GPS_ZA_2679-sc-2138262 RANDOM 170840467;179218693 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774162/ERR774162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774162/ERR774162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774162/14913_5#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774162/14913_5#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774162/ERR774162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774162/ERR774162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774162/14913_5#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774162/14913_5#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286570892;8368 ERS566835 ERX717041 GENOMIC 12403399 517808000 2015-03-03 SC_RUN_14913_5#67 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774162/14913_5#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774162/14913_5#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#67 ERR714575 SC_EXP_14412_1#38 235 8bf9da0073fe16e66a1acb05f2260efe;745ab2f34a6e090c783769897d6a8ed3 1313 f21224de61d4972d9265ff1d66b324e3;d614ad0c38d9034e7104d9a75ba9ebd8 SAMEA2658691 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714575/ERR714575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714575/ERR714575_2.fastq.gz 6014028 WGS GPS_ZA_1700-sc-2021299 RANDOM 212890113;216555291 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714575/ERR714575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714575/ERR714575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714575/14412_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714575/14412_1#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714575/ERR714575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714575/ERR714575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714575/14412_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714575/14412_1#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 353971899;9998 ERS508719 ERX658497 GENOMIC 11839086 601402800 2015-01-08 SC_RUN_14412_1#38 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714575/14412_1#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714575/14412_1#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#38 ERR505513 SC_EXP_12291_1#55 213 506a866f8737ef712f37efac4a93e023;a95d91cee549305d4bb13a91164b1f1a 1313 a2029abbcda060ad961823f321cf115f;24fc8d1d01d65596bc351ca38b851680 SAMEA2335714 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505513/ERR505513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505513/ERR505513_2.fastq.gz 5460286 WGS PATH2551-sc-1810639 RANDOM 168806555;175330891 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505513/ERR505513_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505513/ERR505513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505513/12291_1#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505513/12291_1#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505513/ERR505513_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505513/ERR505513_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505513/12291_1#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505513/12291_1#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282023598;9087 ERS393908 ERX470870 GENOMIC 9441174 546028600 2014-05-19 SC_RUN_12291_1#55 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505513/12291_1#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505513/12291_1#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#55 ERR646536 SC_EXP_13470_1#6 235 2b513f936078d0a0b15aa4985b14009b;e207c858227f77d5b5d7dd366a5e1c4f 1313 6449dadc349cca966ba55723ab08d6ef;02c5d3b380f8a4e3874f5baf2edd4c71 SAMEA2554309 2014-10-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646536/ERR646536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646536/ERR646536_2.fastq.gz 7106488 WGS GPS_ZA_1198-sc-1951348 RANDOM 239668380;244923101 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646536/ERR646536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/ERR646536/ERR646536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646536/13470_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646536/13470_1#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646536/ERR646536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR646/ERR646536/ERR646536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646536/13470_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR646/ERR646536/13470_1#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 407666541;11660 ERS464810 ERX602972 GENOMIC 10615562 710648800 2014-10-01 SC_RUN_13470_1#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646536/13470_1#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR646/ERR646536/13470_1#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA363825 13470_1#6 ERR047909 SC_EXP_6593_4#16 238 d3825afa3fe5d37ffe22df20c7f9f1ff 1313 d5836fb34fd65429515796dc12d50cf5;e1ea03d9b0122a0fc652636b4a4783d1 SAMEA1023834 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047909/ERR047909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047909/ERR047909_2.fastq.gz 11990377 WGS SMRU112-sc-2011-01-27-1060301 RANDOM 699867396;749833416 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047909/ERR047909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047909/ERR047909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047909/6593_4#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047909/ERR047909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047909/ERR047909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047909/6593_4#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1821778326 ERS019270 ERX024972 GENOMIC 2882491 1798556550 2011-10-11 SC_RUN_6593_4#16 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047909/6593_4#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048016 SC_EXP_6630_4#3 226 45d911775b3984ed6b101dcff44ab92c 1313 721972323a0428e2ab1faecb3560b42b;e1aff8f4c3b3a99527eef61a1a45aa83 SAMEA1023671 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048016/ERR048016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048016/ERR048016_2.fastq.gz 3124807 WGS SMRU387-sc-2011-01-27-1060576 RANDOM 189198251;188467465 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048016/ERR048016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048016/ERR048016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048016/6630_4#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048016/ERR048016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048016/ERR048016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048016/6630_4#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 485093870 ERS019545 ERX025079 GENOMIC 2952174 468721050 2011-10-11 SC_RUN_6630_4#3 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048016/6630_4#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047979 SC_EXP_6630_2#14 233 64c865b5f78150fb39ebe78c8e7820fb 1313 0f743cac09e29c51aa119018a37f9671;7ed684b06be54e1523a310eb41cb1ec1 SAMEA1023692 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047979/ERR047979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047979/ERR047979_2.fastq.gz 1858655 WGS SMRU302-sc-2011-01-27-1060491 RANDOM 113524088;113434198 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047979/ERR047979_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047979/ERR047979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047979/6630_2#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047979/ERR047979_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047979/ERR047979_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047979/6630_2#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 286383498 ERS019460 ERX025042 GENOMIC 2952089 278798250 2011-10-11 SC_RUN_6630_2#14 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047979/6630_2#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047975 SC_EXP_6630_2#10 233 9b848fe6feb4790a0bf929857111eda1 1313 08b5d0800139e43c09fbae68c2c36fcf;25cd421dacbb7ce053475cda09fb6859 SAMEA1024199 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047975/ERR047975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047975/ERR047975_2.fastq.gz 1977382 WGS SMRU298-sc-2011-01-27-1060487 RANDOM 121927906;122339273 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047975/ERR047975_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047975/ERR047975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047975/6630_2#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047975/ERR047975_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047975/ERR047975_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047975/6630_2#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 307312288 ERS019456 ERX025038 GENOMIC 2952085 296607300 2011-10-11 SC_RUN_6630_2#10 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047975/6630_2#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048057 SC_EXP_6631_1#20 217 cd50e4eaffb5522d4651487f0c9dbf84 1313 81e606c8af10a2ed285bdb25d9d51d35;0c56b33fb7ad6c9aad38ca7d50079846 SAMEA1024048 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048057/ERR048057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048057/ERR048057_2.fastq.gz 5346248 WGS SMRU332-sc-2011-01-27-1060521 RANDOM 301039798;297840857 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048057/ERR048057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048057/ERR048057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048057/6631_1#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048057/ERR048057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048057/ERR048057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048057/6631_1#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 756715801 ERS019490 ERX025120 GENOMIC 2952119 801937200 2011-10-11 SC_RUN_6631_1#20 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048057/6631_1#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048141 SC_EXP_6631_5#8 201 cc77ea225ac8547243c2ba8e7b410061 1313 a8df4f34d185164757c66caa1dcac5fe;2d60a4ac4cf421ebec016f5968aedd5c SAMEA1023795 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048141/ERR048141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048141/ERR048141_2.fastq.gz 5810855 WGS SMRU464-sc-2011-01-27-1060653 RANDOM 324476084;333512041 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048141/ERR048141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048141/ERR048141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048141/6631_5#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048141/ERR048141_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048141/ERR048141_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048141/6631_5#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 810933503 ERS019622 ERX025204 GENOMIC 3037783 871628250 2011-10-11 SC_RUN_6631_5#8 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048141/6631_5#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054235 SC_EXP_6710_6#14 229 3e4ba17a49469c8a3bb0c0406c91e645 1313 53518ccb9359c8579d04ecdd006eea30;0eb58b6efa59c8c8c3ae1d72d8d54dab SAMEA1025121 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054235/ERR054235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054235/ERR054235_2.fastq.gz 6539480 WGS SMRU1358-sc-2011-01-27-1061571 RANDOM 387202784;408787284 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054235/ERR054235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054235/ERR054235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054235/6710_6#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054235/ERR054235_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054235/ERR054235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054235/6710_6#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 979751768 ERS020868 ERX031281 GENOMIC 3348816 980922000 2011-11-15 SC_RUN_6710_6#14 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054235/6710_6#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054364 SC_EXP_6736_6#23 247 912879d1f7e6a5500890d9789635eac2 1313 e8da6d547ffee076141f4350add7f688;7e582ff0d63b57749a7ea5e1f6f2f01b SAMEA1025490 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054364/ERR054364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054364/ERR054364_2.fastq.gz 6725150 WGS SMRU1271-sc-2011-01-27-1061484 RANDOM 358908735;381230347 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054364/ERR054364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054364/ERR054364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054364/6736_6#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054364/ERR054364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054364/ERR054364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054364/6736_6#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 914491242 ERS020781 ERX031410 GENOMIC 3308118 1008772500 2011-11-15 SC_RUN_6736_6#23 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054364/6736_6#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054233 SC_EXP_6710_6#12 229 27128721e1ea7784608186de3d21101f 1313 5e45a6c844175a02b002e03c11a96b8e;19f32d012035528dd564ab6641352abb SAMEA1025136 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054233/ERR054233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054233/ERR054233_2.fastq.gz 15725438 WGS SMRU1356-sc-2011-01-27-1061569 RANDOM 909244659;955611257 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054233/ERR054233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054233/ERR054233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054233/6710_6#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054233/ERR054233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054233/ERR054233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054233/6710_6#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 2275449879 ERS020866 ERX031279 GENOMIC 3348814 2358815700 2011-11-15 SC_RUN_6710_6#12 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054233/6710_6#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054628 SC_EXP_6755_5#24 248 c88aeb23820b6e3807aa1fad750e15d9 1313 3de57a27baabb46b54e8661e94d956e9;e624161ad1f2055eedd603f79dee26ca SAMEA1025651 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054628/ERR054628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054628/ERR054628_2.fastq.gz 8924811 WGS SMRU1176-sc-2011-01-27-1061389 RANDOM 484964236;505531512 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054628/ERR054628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054628/ERR054628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054628/6755_5#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054628/ERR054628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054628/ERR054628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054628/6755_5#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1221693495 ERS020686 ERX031674 GENOMIC 3307636 1338721650 2011-11-15 SC_RUN_6755_5#24 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054628/6755_5#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054356 SC_EXP_6736_6#15 247 7476da5ff03b266c22eed58a15238d78 1313 8aa48a259d1e6f897e8d31c82d9fa556;ccd918687ec3ba996052ecf0d45b272a SAMEA1025659 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054356/ERR054356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054356/ERR054356_2.fastq.gz 5432839 WGS SMRU1263-sc-2011-01-27-1061476 RANDOM 284459290;301191956 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054356/ERR054356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054356/ERR054356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054356/6736_6#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054356/ERR054356_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054356/ERR054356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054356/6736_6#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 732750074 ERS020773 ERX031402 GENOMIC 3308110 814925850 2011-11-15 SC_RUN_6736_6#15 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054356/6736_6#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054554 SC_EXP_6755_2#22 204 c2ba966d282540c42e13bb5239a28e01 1313 9cf9c838c49325246e7f9017c67865f7;4ccc4196bc38ef3a519bab11d8963982 SAMEA1024628 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054554/ERR054554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054554/ERR054554_2.fastq.gz 3660279 WGS SMRU814-sc-2011-01-27-1061003 RANDOM 174119184;179082278 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054554/ERR054554_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054554/ERR054554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054554/6755_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054554/ERR054554_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054554/ERR054554_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054554/6755_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 451773219 ERS020324 ERX031600 GENOMIC 3152323 549041850 2011-11-15 SC_RUN_6755_2#22 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054554/6755_2#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054531 SC_EXP_6755_1#23 221 01a92c3d954c97cd7aee6ad81f8392fd 1313 87e800426b2b13bc70c538d2d8d4d802;24d021f93d4382279756abe15d55aa6d SAMEA1024871 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054531/ERR054531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054531/ERR054531_2.fastq.gz 4353990 WGS SMRU791-sc-2011-01-27-1060980 RANDOM 209042685;212052086 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054531/ERR054531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054531/ERR054531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054531/6755_1#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054531/ERR054531_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054531/ERR054531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054531/6755_1#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 532851691 ERS020301 ERX031577 GENOMIC 3152300 653098500 2011-11-15 SC_RUN_6755_1#23 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054531/6755_1#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054354 SC_EXP_6736_6#13 247 b92f5c1831a56039007acc3a235fa58a 1313 6ff53d78bebcb0072d54567a981fe656;2b7f50ee9a1d42d5ac1fa6ed73eede25 SAMEA1025631 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054354/ERR054354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054354/ERR054354_2.fastq.gz 7318259 WGS SMRU1261-sc-2011-01-27-1061474 RANDOM 383254055;403312828 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054354/ERR054354_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054354/ERR054354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054354/6736_6#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054354/ERR054354_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054354/ERR054354_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054354/6736_6#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 980073182 ERS020771 ERX031400 GENOMIC 3308108 1097738850 2011-11-15 SC_RUN_6736_6#13 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054354/6736_6#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054505 SC_EXP_6753_4#21 212 2ed5bfca2934ea0186508e740da19e60 1313 ce446d7216a1b6a8e890261e86695117;776e9b38e82241f5a757e05a1ea29037 SAMEA1025178 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054505/ERR054505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054505/ERR054505_2.fastq.gz 7212497 WGS SMRU1557-sc-2011-01-27-1061770 RANDOM 477601423;504874911 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054505/ERR054505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054505/ERR054505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054505/6753_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054505/ERR054505_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054505/ERR054505_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054505/6753_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1241215883 ERS021067 ERX031551 GENOMIC 3414243 1081874550 2011-11-15 SC_RUN_6753_4#21 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054505/6753_4#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054504 SC_EXP_6753_4#20 212 2ba1be920f8b3f6c0beb2e2dc0c1200e 1313 856d04f93ade2673cfc7b591db0af66c;9001b5b13c882dc8f010eb5bb5f2eeb1 SAMEA1025364 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054504/ERR054504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054504/ERR054504_2.fastq.gz 6563764 WGS SMRU1556-sc-2011-01-27-1061769 RANDOM 427574943;451410485 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054504/ERR054504_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054504/ERR054504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054504/6753_4#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054504/ERR054504_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054504/ERR054504_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054504/6753_4#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1112427195 ERS021066 ERX031550 GENOMIC 3414242 984564600 2011-11-15 SC_RUN_6753_4#20 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054504/6753_4#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054284 SC_EXP_6710_8#15 230 f7b1b33bade26e9d80a14ed0775bfaaa 1313 9d024e5c59ef432b20b450b0dbe340b9;7a32f723fc921857d14a36bee7d00cda SAMEA1025135 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054284/ERR054284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054284/ERR054284_2.fastq.gz 6680550 WGS SMRU1407-sc-2011-01-27-1061620 RANDOM 396843894;412881276 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054284/ERR054284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054284/ERR054284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054284/6710_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054284/ERR054284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054284/ERR054284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054284/6710_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 987903784 ERS020917 ERX031330 GENOMIC 3348865 1002082500 2011-11-15 SC_RUN_6710_8#15 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054284/6710_8#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054281 SC_EXP_6710_8#12 230 66a3ab2b42ab55b80110c3ecbc4b8d01 1313 3c594f1e847c63416aed290c824994da;66809abd22611484e84e547f1e43d7e7 SAMEA1025159 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054281/ERR054281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054281/ERR054281_2.fastq.gz 11258713 WGS SMRU1404-sc-2011-01-27-1061617 RANDOM 648051246;675684020 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054281/ERR054281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054281/ERR054281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054281/6710_8#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054281/ERR054281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054281/ERR054281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054281/6710_8#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1644020865 ERS020914 ERX031327 GENOMIC 3348862 1688806950 2011-11-15 SC_RUN_6710_8#12 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054281/6710_8#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051648 SC_EXP_6731_5#22 232 e3cbf4b8598c0c7fe9759efc9ba2a7cb 1313 65403fb9c59ebcac769367d5c6921a78;939ac2fa9eea0cf7bb8ad94a5f8e5a21 SAMEA1024769 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051648/ERR051648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051648/ERR051648_2.fastq.gz 4675830 WGS SMRU1102-sc-2011-01-27-1061315 RANDOM 293842828;310614714 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051648/ERR051648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051648/ERR051648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051648/6731_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051648/ERR051648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051648/ERR051648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051648/6731_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 760303994 ERS020612 ERX028696 GENOMIC 3246352 701374500 2011-11-02 SC_RUN_6731_5#22 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051648/6731_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051516 SC_EXP_6730_7#10 229 4157ed735058d51849edbf3dd14c7ca3 1313 ce96156929aeb685f8d551379e903425;c8d46bd9d2d5ee175f17ecf539d36aa4 SAMEA1024616 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051516/ERR051516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051516/ERR051516_2.fastq.gz 2876179 WGS SMRU706-sc-2011-01-27-1060895 RANDOM 155096374;159729835 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051516/ERR051516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051516/ERR051516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051516/6730_7#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051516/ERR051516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051516/ERR051516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051516/6730_7#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 398021646 ERS020216 ERX028564 GENOMIC 3100208 431426850 2011-11-02 SC_RUN_6730_7#10 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051516/6730_7#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051433 SC_EXP_6730_1#23 236 f0ec535131159bd6664c729bf146e1d3 1313 29248e328cd2c1fd1232c89404af8cad;777b1d8acb84094de6e324ecd0a25cd5 SAMEA1025025 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051433/ERR051433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051433/ERR051433_2.fastq.gz 2269307 WGS SMRU599-sc-2011-01-27-1060788 RANDOM 129594545;134793767 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051433/ERR051433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051433/ERR051433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051433/6730_1#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051433/ERR051433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051433/ERR051433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051433/6730_1#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 332099872 ERS020109 ERX028481 GENOMIC 3100077 340396050 2011-11-02 SC_RUN_6730_1#23 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051433/6730_1#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051430 SC_EXP_6730_1#20 236 7ef622e0fdcc66bf5fa1a2dcc68c5923 1313 79019c0392c000cdeccb338aefe493ac;870f0ec673d0d605cfdf22693061c6d2 SAMEA1025003 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051430/ERR051430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051430/ERR051430_2.fastq.gz 5368801 WGS SMRU596-sc-2011-01-27-1060785 RANDOM 304203035;315864141 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051430/ERR051430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051430/ERR051430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051430/6730_1#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051430/ERR051430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051430/ERR051430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051430/6730_1#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 773906214 ERS020106 ERX028478 GENOMIC 3100074 805320150 2011-11-02 SC_RUN_6730_1#20 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051430/6730_1#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR069649 SC_EXP_7011_5#15 204 b5d9f690126fe74cc8dd43602127484b 1313 f01c635456ff4797d92326875b4c001e;73465f8c9ea5aa15102da972d2f2a8ee SAMEA1028713 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069649/ERR069649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069649/ERR069649_2.fastq.gz 3644978 WGS SMRU2799-sc-2011-01-27-1063012 RANDOM 223936246;218299407 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069649/ERR069649_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069649/ERR069649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069649/7011_5#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069649/ERR069649_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069649/ERR069649_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069649/7011_5#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 567249127 ERS022309 ERX047502 GENOMIC 3758471 546746700 2012-01-19 SC_RUN_7011_5#15 60 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069649/7011_5#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR057953 SC_EXP_6823_6#4 249 1199320d381fc20e9ee087a30f82530d 1313 63896bd2389e9b26367cc2124bc13682;835177ef61d5bf88c64197496ffeaeac SAMEA1026122 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057953/ERR057953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057953/ERR057953_2.fastq.gz 8272225 WGS SMRU1972-sc-2011-01-27-1062185 RANDOM 500331164;519450442 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057953/ERR057953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057953/ERR057953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057953/6823_6#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057953/ERR057953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057953/ERR057953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057953/6823_6#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1285914271 ERS021482 ERX035799 GENOMIC 3469201 1240833750 2012-03-22 SC_RUN_6823_6#4 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057953/6823_6#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056816 SC_EXP_6805_4#14 237 7839bff15ac1f8129f73850118000a3e 1313 36e356e54708ada6802270c4594bbd93;2142625134d71cd591b9b1a903e3d84a SAMEA1025367 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056816/ERR056816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056816/ERR056816_2.fastq.gz 5869450 WGS SMRU1670-sc-2011-01-27-1061883 RANDOM 304582227;313330642 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056816/ERR056816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056816/ERR056816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056816/6805_4#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056816/ERR056816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056816/ERR056816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056816/6805_4#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 779462372 ERS021180 ERX034660 GENOMIC 3481145 880417500 2011-11-29 SC_RUN_6805_4#14 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056816/6805_4#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR084304 SC_EXP_7092_6#6 230 2c71bc13ed83c4ca76a193c439c63fd1 1313 6f570801d5511f5f4c3e68c9fa084d0c;47318a690022236bc67c4c2a5f6d297d SAMEA1029432 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084304/ERR084304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084304/ERR084304_2.fastq.gz 2735736 WGS SMRU3102-sc-2011-01-27-1063315 RANDOM 178556591;177136155 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084304/ERR084304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084304/ERR084304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084304/7092_6#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084304/ERR084304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084304/ERR084304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084304/7092_6#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 653814377 ERS022612 ERX062070 GENOMIC 3890212 410360400 2012-02-07 SC_RUN_7092_6#6 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084304/7092_6#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR060032 SC_EXP_6841_7#4 222 b94f716da3090d8618ce4a424f0842e2 1313 c2aad5e75802a7284660011cb1609591;3419c5e9c2a6260dc9ab6b3302fb201e SAMEA1025539 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060032/ERR060032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060032/ERR060032_2.fastq.gz 7274466 WGS SMRU1324-sc-2011-01-27-1061537 RANDOM 494074570;509952386 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060032/ERR060032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060032/ERR060032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060032/6841_7#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060032/ERR060032_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060032/ERR060032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060032/6841_7#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1259064066 ERS020834 ERX037870 GENOMIC 3348782 1091169900 2011-12-13 SC_RUN_6841_7#4 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060032/6841_7#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR049958 SC_EXP_6664_1#23 221 63b9c1e46f06e705174f37532078d79f 1313 b23c876fa99836ee97f3281b83687ef3;a31cd8f0c7abd801a3a0063534961df0 SAMEA1023793 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049958/ERR049958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049958/ERR049958_2.fastq.gz 8470628 WGS SMRU239-sc-2011-01-27-1060428 RANDOM 482984083;503585361 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049958/ERR049958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049958/ERR049958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049958/6664_1#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049958/ERR049958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049958/ERR049958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049958/6664_1#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1239028968 ERS019397 ERX027018 GENOMIC 2950577 1270594200 2011-10-25 SC_RUN_6664_1#23 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049958/6664_1#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 ERR059981 SC_EXP_6840_1#1 232 98494780ac3a3a23698b507f905c64f3 1313 339add29eda917f392ae1ef7e7edadbc;ea87ce8777024fc86bd607ff8bf96599 SAMEA1026226 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059981/ERR059981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059981/ERR059981_2.fastq.gz 7578815 WGS SMRU1753-sc-2011-01-27-1061966 RANDOM 477726186;476629932 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059981/ERR059981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR059/ERR059981/ERR059981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059981/6840_1#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059981/ERR059981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR059/ERR059981/ERR059981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR059/ERR059981/6840_1#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1191822992 ERS021263 ERX037819 GENOMIC 3481270 1136822250 2012-03-22 SC_RUN_6840_1#1 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR059/ERR059981/6840_1#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR060016 SC_EXP_6840_3#12 234 afc587d1498b0ee09c063ccd17f03d31 1313 b0f24c68021a7b533296321f8cf52274;19203541c0f5c13a281d8766c4f9a520 SAMEA1026126 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060016/ERR060016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060016/ERR060016_2.fastq.gz 9437294 WGS SMRU1812-sc-2011-01-27-1062025 RANDOM 601503178;600999913 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060016/ERR060016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060016/ERR060016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060016/6840_3#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060016/ERR060016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060016/ERR060016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060016/6840_3#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1508840406 ERS021322 ERX037854 GENOMIC 3481344 1415594100 2012-03-22 SC_RUN_6840_3#12 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060016/6840_3#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR049091 SC_EXP_6641_6#13 219 3051a50e41b2c5284112f96dd9649739 1313 0c47b7d247b8179306e8a95a8a053781;626cc845d8f1741d92e0e0aaa36f57df SAMEA1023761 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049091/ERR049091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049091/ERR049091_2.fastq.gz 4727260 WGS SMRU157-sc-2011-01-27-1060346 RANDOM 321015038;331090169 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049091/ERR049091_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049091/ERR049091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049091/6641_6#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049091/ERR049091_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049091/ERR049091_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049091/6641_6#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 827998526 ERS019315 ERX026158 GENOMIC 3040284 709089000 2011-10-18 SC_RUN_6641_6#13 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049091/6641_6#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR052592 SC_EXP_6673_8#15 221 4c036d02eba432ed113bd1c7490550a8 1313 3b7c1dcb42aa321db108496510571a00;2332b6b66d3746d7b8e44740e5839f42 SAMEA1024189 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052592/ERR052592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052592/ERR052592_2.fastq.gz 7483689 WGS SMRU255-sc-2011-01-27-1060444 RANDOM 417998454;450080272 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052592/ERR052592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052592/ERR052592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052592/6673_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052592/ERR052592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052592/ERR052592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052592/6673_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1081177549 ERS019413 ERX029640 GENOMIC 2950593 1122553350 2011-11-07 SC_RUN_6673_8#15 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052592/6673_8#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR049083 SC_EXP_6641_6#5 219 04e76f0808e7ea708dce47afd3509825 1313 6de6a7b9ab017294f9aedc6524eb6a4d;10ab5936a620ca8f3e512e22ec4377d9 SAMEA1023947 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049083/ERR049083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049083/ERR049083_2.fastq.gz 6167055 WGS SMRU149-sc-2011-01-27-1060338 RANDOM 411217382;420884024 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049083/ERR049083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049083/ERR049083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049083/6641_6#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049083/ERR049083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049083/ERR049083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049083/6641_6#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1065041656 ERS019307 ERX026150 GENOMIC 3040276 925058250 2011-10-18 SC_RUN_6641_6#5 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049083/6641_6#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR039613 SC_EXP_6259_7#6 201 0cfa7071a2dd7b57ee25f6436c3cf379 1313 8c38febb0890b2a157a2fbb88efb8e87;acc2807630a0d2eb6c9fed4fb5f9ca36 SAMEA974614 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039613/ERR039613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039613/ERR039613_2.fastq.gz 4923981 WGS SMRU54-sc-2011-01-27-1026479 RANDOM 258790683;269667583 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039613/ERR039613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039613/ERR039613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039613/6259_7#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039613/ERR039613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039613/ERR039613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039613/6259_7#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 666850346 ERS019212 ERX016786 GENOMIC 2590958 738597150 2011-07-27 SC_RUN_6259_7#6 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039613/6259_7#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR046081 SC_EXP_6512_2#10 206 d003c8ec7e2a9e2f18e604c8b58afa9b 1313 bd8070e98e97f348eaf3dd4badeb0fe2;a7d4cdc8fa7f2e878c742eb2ff077844 SAMEA1026839 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046081/ERR046081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046081/ERR046081_2.fastq.gz 6539256 WGS UoS3138-sc-2011-02-14-1078310 RANDOM 374517811;379352183 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046081/ERR046081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046081/ERR046081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046081/6512_2#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046081/ERR046081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046081/ERR046081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046081/6512_2#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 936635675 ERS023256 ERX023143 GENOMIC 2734260 980888400 2011-09-20 SC_RUN_6512_2#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046081/6512_2#10.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_2#10 ERR1453770 SC_EXP_19341_3#122 448 af9fac99a46c38df3d76aebf8e8fda3e;5129afb8b3212cd7b511c5384812c61d 1313 017818b2e02c743f68ed5db85c7cfa46;e8ceaec99bd709b9b7b9e77aad501a63 SAMEA3714087 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/000/ERR1453770/ERR1453770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/000/ERR1453770/ERR1453770_2.fastq.gz 2688932 WGS 426be5e0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 52834390;62636044 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/000/ERR1453770/ERR1453770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/000/ERR1453770/ERR1453770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453770/19341_3#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453770/19341_3#122.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/000/ERR1453770/ERR1453770_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/000/ERR1453770/ERR1453770_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453770/19341_3#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453770/19341_3#122.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83513620;4488 ERS1021236 ERX1524248 GENOMIC 16008574 336116500 2016-06-14 SC_RUN_19341_3#122 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453770/19341_3#122.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453770/19341_3#122.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#122 ERR1065631 SC_EXP_17138_5#57 500 cb973433b1adbbb1c1a9b62dd273d94e;d798b7d71a8820c5ff266e1130515334 1313 c86682d0f9dcfaa6dcf7c3f62c44fb52;ddd7e7439aff2f7c3a13e68c991a5cd5 SAMEA3232725 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065631/ERR1065631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065631/ERR1065631_2.fastq.gz 2169732 WGS GPS_NP_1164-sc-2205645 RANDOM 43696150;42809315 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065631/ERR1065631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065631/ERR1065631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065631/17138_5#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065631/17138_5#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065631/ERR1065631_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065631/ERR1065631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065631/17138_5#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065631/17138_5#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63332280;3753 ERS653936 ERX1145781 GENOMIC 14451834 271216500 2015-10-13 SC_RUN_17138_5#57 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065631/17138_5#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065631/17138_5#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#57 ERR1065622 SC_EXP_17138_5#48 500 8da41f42420c751870447427abcc64cc;ad40e4ea248ce5db3737359c2c0f77b6 1313 8702feea2da03d169f5cc01258fb14b3;36abccc92d60313d792f7ef603cfb973 SAMEA3232673 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065622/ERR1065622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065622/ERR1065622_2.fastq.gz 4280420 WGS GPS_NP_1029-sc-2205592 RANDOM 91590819;88540889 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065622/ERR1065622_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065622/ERR1065622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065622/17138_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065622/17138_5#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065622/ERR1065622_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065622/ERR1065622_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065622/17138_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065622/17138_5#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 135952222;6886 ERS653884 ERX1145772 GENOMIC 14451916 535052500 2015-10-13 SC_RUN_17138_5#48 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065622/17138_5#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065622/17138_5#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#48 ERR980298 SC_EXP_16288_8#25 202 5c5acd60d81af159c620764a3ec9ef36;1d7235db000bab85ad26a2fa3a3f0bbd 1313 2aea7cf2dd233bfdef5df1f281a124ed;81eac52f9a1a9f7b4b4bee9df4874c7d SAMEA3232791 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980298/ERR980298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980298/ERR980298_2.fastq.gz 4511358 WGS GPS_NP_1319-sc-2205703 RANDOM 154028101;149726613 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980298/ERR980298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980298/ERR980298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980298/16288_8#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980298/16288_8#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980298/ERR980298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980298/ERR980298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980298/16288_8#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980298/16288_8#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245044342;7290 ERS654002 ERX1057170 GENOMIC 13301752 451135800 2015-08-12 SC_RUN_16288_8#25 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980298/16288_8#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980298/16288_8#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#25 ERR980105 SC_EXP_16288_5#67 218 27cb3de8fafddc785f6c55cce9692cc4;77419138bac57c89cd15efb8579fb1fe 1313 bb2e6b9ea4c2071ee2037efbe101fde7;c2362320e409311317c61c26d9e66b87 SAMEA3232576 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980105/ERR980105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980105/ERR980105_2.fastq.gz 5094528 WGS GPS_NP_3136-sc-2205494 RANDOM 172860324;172718917 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980105/ERR980105_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980105/ERR980105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980105/16288_5#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980105/16288_5#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980105/ERR980105_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980105/ERR980105_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980105/16288_5#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980105/16288_5#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281945094;8298 ERS653787 ERX1056977 GENOMIC 13296362 509452800 2015-08-12 SC_RUN_16288_5#67 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980105/16288_5#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980105/16288_5#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#67 ERR979935 SC_EXP_16288_3#62 234 d15561ac0e3648430a3d385ff29a0735;d610d88c855139313d62c77739a73bb4 1313 9afd7640b62246340ac278857086cae9;39e6954fd8567646a9131bb672da0b88 SAMEA3232405 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979935/ERR979935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979935/ERR979935_2.fastq.gz 4079994 WGS GPS_NP_2371-sc-2205323 RANDOM 133967368;132529814 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979935/ERR979935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979935/ERR979935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979935/16288_3#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979935/16288_3#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979935/ERR979935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979935/ERR979935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979935/16288_3#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979935/16288_3#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 216204875;6627 ERS653616 ERX1056807 GENOMIC 13296203 407999400 2015-08-12 SC_RUN_16288_3#62 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979935/16288_3#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979935/16288_3#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#62 ERR063803 SC_EXP_6871_1#18 236 eebf683e53183e5fe464bccd7b182673 1313 28e378f643d4f308ae8a0defadb0cf50;ec74720ed78656ff20bc73b5e35a2f64 SAMEA1025878 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063803/ERR063803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063803/ERR063803_2.fastq.gz 4886939 WGS SMRU1794-sc-2011-01-27-1062007 RANDOM 297740087;293204363 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063803/ERR063803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063803/ERR063803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063803/6871_1#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063803/ERR063803_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063803/ERR063803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063803/6871_1#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 746754467 ERS021304 ERX041776 GENOMIC 3481312 733040850 2012-01-05 SC_RUN_6871_1#18 56 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063803/6871_1#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054642 SC_EXP_6755_6#14 249 1b15b1389d08a99a174a4231662a6b24 1313 c8524be846d3566c45cfd2969278bd99;d749603dcdded09824a6d5214a4155d4 SAMEA1025297 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054642/ERR054642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054642/ERR054642_2.fastq.gz 8096092 WGS SMRU1191-sc-2011-01-27-1061404 RANDOM 439025390;458659869 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054642/ERR054642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054642/ERR054642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054642/6755_6#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054642/ERR054642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054642/ERR054642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054642/6755_6#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1107089730 ERS020701 ERX031688 GENOMIC 3308038 1214413800 2011-11-15 SC_RUN_6755_6#14 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054642/6755_6#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR047915 SC_EXP_6593_4#22 238 ea649c08e4de34300dc90a2e8cc54510 1313 af02f93571b600e32473046684a56607;cc8ee893c438ed4ebc663f40ce2ee5d9 SAMEA1024093 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047915/ERR047915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047915/ERR047915_2.fastq.gz 11358812 WGS SMRU118-sc-2011-01-27-1060307 RANDOM 668017252;712125621 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047915/ERR047915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047915/ERR047915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047915/6593_4#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047915/ERR047915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047915/ERR047915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047915/6593_4#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1721299108 ERS019276 ERX024978 GENOMIC 2882497 1703821800 2011-10-11 SC_RUN_6593_4#22 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047915/6593_4#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054592 SC_EXP_6755_4#12 251 9831e82eedc8a22dcba00fc010a4fe4d 1313 f8c74b18e9553a84df5f2e4f4fd7e98e;d3bab10a349ee2ee190626077c29661a SAMEA1024558 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054592/ERR054592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054592/ERR054592_2.fastq.gz 7714729 WGS SMRU1140-sc-2011-01-27-1061353 RANDOM 392018511;406646707 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054592/ERR054592_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054592/ERR054592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054592/6755_4#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054592/ERR054592_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054592/ERR054592_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054592/6755_4#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1013094058 ERS020650 ERX031638 GENOMIC 3307600 1157209350 2011-11-15 SC_RUN_6755_4#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054592/6755_4#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051612 SC_EXP_6731_4#10 216 e28121d70cc3d8bc8a9c75bc25aab3f8 1313 bc106b57a64e0467be71ff523c47c7b4;95ce19d466dc7ce46c8ba402ff8b5d54 SAMEA1024747 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051612/ERR051612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051612/ERR051612_2.fastq.gz 2229886 WGS SMRU1066-sc-2011-01-27-1061279 RANDOM 119904855;122256328 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051612/ERR051612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051612/ERR051612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051612/6731_4#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051612/ERR051612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051612/ERR051612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051612/6731_4#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 309497238 ERS020576 ERX028660 GENOMIC 3246291 334482900 2011-11-02 SC_RUN_6731_4#10 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051612/6731_4#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR067768 SC_EXP_6972_2#1 231 80ad56555c52372f2961026fd9e6028b 1313 87e0a4ea57155122b9a70acdba7cc6fb;7a394251aaaf93a5cc0a3f53a3d89343 SAMEA1028685 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067768/ERR067768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067768/ERR067768_2.fastq.gz 4535243 WGS SMRU2545-sc-2011-01-27-1062758 RANDOM 277270425;288065478 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067768/ERR067768_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067768/ERR067768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067768/6972_2#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067768/ERR067768_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067768/ERR067768_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067768/6972_2#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 723299644 ERS022055 ERX045631 GENOMIC 3686216 680286450 2012-01-16 SC_RUN_6972_2#1 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067768/6972_2#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR056852 SC_EXP_6805_6#2 238 3ab3232ce42ae5b61798e7a4c3b26b81 1313 6fb5deb133312bafcdc1dafea6f43d1e;20a8583351f100f16bcaf865c6b91d22 SAMEA1025131 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056852/ERR056852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056852/ERR056852_2.fastq.gz 5963851 WGS SMRU1706-sc-2011-01-27-1061919 RANDOM 304072047;309652272 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056852/ERR056852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056852/ERR056852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056852/6805_6#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056852/ERR056852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056852/ERR056852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056852/6805_6#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 773479181 ERS021216 ERX034696 GENOMIC 3481196 894577650 2011-11-29 SC_RUN_6805_6#2 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056852/6805_6#2.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR067812 SC_EXP_6972_3#21 229 22abf6b63c0a15b9c0f0c10bf220d73a 1313 73a6b2593bbc0b3670301403e9601bf5;df1f5964c155e3d31090eca5006c3bf9 SAMEA1028810 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067812/ERR067812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067812/ERR067812_2.fastq.gz 4595406 WGS SMRU2589-sc-2011-01-27-1062802 RANDOM 290128068;294347494 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067812/ERR067812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067812/ERR067812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067812/6972_3#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067812/ERR067812_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067812/ERR067812_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067812/6972_3#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 746956479 ERS022099 ERX045675 GENOMIC 3686262 689310900 2012-01-16 SC_RUN_6972_3#21 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067812/6972_3#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR060027 SC_EXP_6840_3#23 234 3c5f6d1d563777e7ac6a3368c659bc7b 1313 733c84b76ea3a5db99a398e4cf9aae63;566a71189a018ff4888b2af7d54c94bf SAMEA1025962 2011-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060027/ERR060027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060027/ERR060027_2.fastq.gz 8273781 WGS SMRU1823-sc-2011-01-27-1062036 RANDOM 533274533;534346656 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060027/ERR060027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR060/ERR060027/ERR060027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060027/6840_3#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060027/ERR060027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR060/ERR060027/ERR060027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR060/ERR060027/6840_3#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1345086750 ERS021333 ERX037865 GENOMIC 3481355 1241067150 2012-03-22 SC_RUN_6840_3#23 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR060/ERR060027/6840_3#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA073802 Streptococcus pneumoniae Streptococcus pneumoniae ERR2305119 SC_EXP_22695_3#78 421 08506f46cb8b391c2f622a0277a08520;6eca94e7d1a9f1cbc697a5286b3ee57b 1313 51b4cddbe7e0068ba742e270f5e69a0e;2c49b68fc04190ecdca8d0f899e5eae0 SAMEA104034667 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305119/ERR2305119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305119/ERR2305119_2.fastq.gz 2354510 WGS e7533570-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61614678;83985426 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305119/ERR2305119_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305119/ERR2305119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305119/22695_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305119/22695_3#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305119/ERR2305119_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305119/ERR2305119_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305119/22695_3#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305119/22695_3#78.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105730810;4027 ERS1698560 ERX2356429 GENOMIC DN477140L:F10 355531010 2018-02-16 SC_RUN_22695_3#78 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305119/22695_3#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305119/22695_3#78.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808632 ERR2305118 SC_EXP_22695_3#77 425 bfccbb82170bf364a6be069043731872;ffa79cb652ef5fb3ed542fd84d2fc98c 1313 61b306deb7a595dd951730c059ca784f;4f0c3ab28ec98a735ff1a94d83a8b1ce SAMEA104034666 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305118/ERR2305118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305118/ERR2305118_2.fastq.gz 2482172 WGS e74b1f20-13c3-11e7-942b-3c4a9275d6c8 RANDOM 64966854;89416169 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305118/ERR2305118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305118/ERR2305118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305118/22695_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305118/22695_3#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305118/ERR2305118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305118/ERR2305118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305118/22695_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305118/22695_3#77.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 112950424;4222 ERS1698559 ERX2356428 GENOMIC DN477140L:E10 374807972 2018-02-16 SC_RUN_22695_3#77 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305118/22695_3#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305118/22695_3#77.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808631 ERR039569 SC_EXP_6259_5#10 197 c4847ed5a1e5b9144ad0b98c4fc7a773 1313 8db07427fef752c64f6d660857ae2d46;5988e24f5a58a5f11d6333ab9b04bc2e SAMEA974694 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039569/ERR039569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039569/ERR039569_2.fastq.gz 4793934 WGS SMRU10-sc-2011-01-27-1026435 RANDOM 270159044;280717788 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039569/ERR039569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039569/ERR039569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039569/6259_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039569/ERR039569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039569/ERR039569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039569/6259_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 687909920 ERS019168 ERX016742 GENOMIC 2590854 719090100 2011-07-27 SC_RUN_6259_5#10 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039569/6259_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2305172 SC_EXP_22695_3#131 423 3548867b5d09d5bb6750c88933e1823c;6ce91251d049dd6f806f978d45803898 1313 c7c005739aef6ea148bfba2da06de313;76d57f160747e794c6146dad0bcbd05d SAMEA104034720 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305172/ERR2305172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305172/ERR2305172_2.fastq.gz 2367622 WGS ecfcf240-13c3-11e7-942b-3c4a9275d6c8 RANDOM 62413478;84132395 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305172/ERR2305172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305172/ERR2305172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305172/22695_3#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305172/22695_3#131.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305172/ERR2305172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305172/ERR2305172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305172/22695_3#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305172/22695_3#131.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106636573;4015 ERS1698613 ERX2356482 GENOMIC DN477141M:D5 357510922 2018-02-16 SC_RUN_22695_3#131 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305172/22695_3#131.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305172/22695_3#131.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808686 ERR039596 SC_EXP_6259_6#13 172 a7d8964d5e7f939bb6f3615a371e8ce9 1313 6677fdd88b1ac10c62f3bd9622d0ac67;f6df86a08ec422710b3fc5c933416662 SAMEA974672 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039596/ERR039596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039596/ERR039596_2.fastq.gz 4452052 WGS SMRU37-sc-2011-01-27-1026462 RANDOM 236717407;242330412 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039596/ERR039596_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039596/ERR039596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039596/6259_6#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039596/ERR039596_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039596/ERR039596_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039596/6259_6#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 612643856 ERS019195 ERX016769 GENOMIC 2590915 667807800 2011-07-27 SC_RUN_6259_6#13 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039596/6259_6#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2305116 SC_EXP_22695_3#75 425 55a5baef6604a4357e5ffc77a7f7aff3;3a35af8dcceb6f24d87d2db3183a8833 1313 8224535fab138cd952f6b96ab7a9e5e0;e61dc55a47da58bc45ce6a3b43181887 SAMEA104034664 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305116/ERR2305116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305116/ERR2305116_2.fastq.gz 2326200 WGS e73af280-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61927096;82530566 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305116/ERR2305116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305116/ERR2305116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305116/22695_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305116/22695_3#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305116/ERR2305116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305116/ERR2305116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305116/22695_3#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305116/22695_3#75.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105128215;3956 ERS1698557 ERX2356426 GENOMIC DN477140L:C10 351256200 2018-02-16 SC_RUN_22695_3#75 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305116/22695_3#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305116/22695_3#75.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808629 ERR2305089 SC_EXP_22695_3#48 431 06c3b562104fc78a3fe56402dd24a852;f36402ac766bfc836b2ed5189a908955 1313 73ee964ca10f3f654d10318519ffe8e7;2173c552d0e1e1e89050417790ce79fd SAMEA104034637 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305089/ERR2305089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305089/ERR2305089_2.fastq.gz 2343384 WGS e65b40e0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61743742;83600148 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305089/ERR2305089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/009/ERR2305089/ERR2305089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305089/22695_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305089/22695_3#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305089/ERR2305089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/009/ERR2305089/ERR2305089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305089/22695_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305089/22695_3#48.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105828067;3996 ERS1698530 ERX2356399 GENOMIC DN477140L:H6 353850984 2018-02-16 SC_RUN_22695_3#48 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305089/22695_3#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305089/22695_3#48.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808602 ERR742669 SC_EXP_14673_4#73 209 ba9e8dd833bf73b1a5eaf1ea80f42a63;2b6d3f9b9aadf0511182ff5380b79d4e 1313 926fb9329f8ca1bf970b6c8c0dc396ef;cc06bd2ed54b6776e60a4522a7642aa6 SAMEA2796766 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742669/ERR742669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742669/ERR742669_2.fastq.gz 4735622 WGS GPS_US_PATH344-sc-2138774 RANDOM 151975013;156659569 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742669/ERR742669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742669/ERR742669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742669/14673_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742669/14673_4#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742669/ERR742669_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742669/ERR742669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742669/14673_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742669/14673_4#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249656384;7648 ERS558377 ERX686352 GENOMIC 12061978 473562200 2015-01-27 SC_RUN_14673_4#73 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742669/14673_4#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742669/14673_4#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#73 ERR714669 SC_EXP_14412_2#37 223 1128dbfa171c549aab534091ebde0942;14a24c169fc02b58a381b3e2853390d2 1313 4c950e3401d71da2b940346aee21aa65;b1129d7af9e6d9b2c440614ee2dec1ed SAMEA2658849 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714669/ERR714669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714669/ERR714669_2.fastq.gz 5270738 WGS GPS_ZA_1889-sc-2021486 RANDOM 180259134;183145512 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714669/ERR714669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714669/ERR714669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714669/14412_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714669/14412_2#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714669/ERR714669_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714669/ERR714669_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714669/14412_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714669/14412_2#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 296933324;8726 ERS508877 ERX658591 GENOMIC 11883007 527073800 2015-01-08 SC_RUN_14412_2#37 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714669/14412_2#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714669/14412_2#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#37 ERR1192136 SC_EXP_17794_8#125 441 4b0b25ef5092581da209bc7425572b3f;a7138a11f080273a049716ec04570a57 1313 476746e7ef790e309eef02be63e8e191;6ed1a7cfdf39b471e0495efea48627c0 SAMEA3381673 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192136/ERR1192136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192136/ERR1192136_2.fastq.gz 2951396 WGS GPS_GM_2184-sc-2279582 RANDOM 52430421;59677481 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192136/ERR1192136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192136/ERR1192136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192136/17794_8#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192136/17794_8#125.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192136/ERR1192136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192136/ERR1192136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192136/17794_8#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192136/17794_8#125.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87325566;4921 ERS719932 ERX1265520 GENOMIC 14941691 368924500 2015-12-17 SC_RUN_17794_8#125 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192136/17794_8#125.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192136/17794_8#125.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#125 ERR600160 SC_EXP_13414_2#21 233 aa69171556cd8cc8c4444ac24c0fcc92;f7752e46c9c987e88cce09d9ae9bcb45 1313 89df6ff6583528878f2ca899d4eafb9a;33acd1257a4db5521d16f99fd947f8cb SAMEA2521572 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600160/ERR600160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600160/ERR600160_2.fastq.gz 5749128 WGS 2012214919-sc-1946864 RANDOM 198160895;200725753 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600160/ERR600160_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600160/ERR600160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600160/13414_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600160/13414_2#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600160/ERR600160_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600160/ERR600160_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600160/13414_2#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600160/13414_2#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 328570710;9142 ERS455112 ERX556989 GENOMIC 10600544 574912800 2014-09-16 SC_RUN_13414_2#21 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600160/13414_2#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600160/13414_2#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#21 ERR352114 SC_EXP_10396_8#21 250 842b47b5086158fa24a73afcda6fad98;8fe65ce2f7a014b17d7f9cef6046e856 1313 2bc9f2fb9f2eafe34962d9e9442539cd;4bea72cbe2daa88335384ab10133f6d2 SAMEA2057701 2013-10-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352114/ERR352114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352114/ERR352114_2.fastq.gz 5761570 WGS PBCN0459-sc-2013-03-27T13:21:27Z-1603767 RANDOM 186917609;198131111 CRAM;CRAI Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352114/ERR352114_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352114/ERR352114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352114/10396_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352114/10396_8#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352114/ERR352114_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352114/ERR352114_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352114/10396_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352114/10396_8#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 314881778;9539 ERS225900 ERX324897 GENOMIC 7811779 576157000 2013-10-14 SC_RUN_10396_8#21 fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352114/10396_8#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352114/10396_8#21.cram.crai Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA257940 10396_8#21 ERR600154 SC_EXP_13414_2#12 233 e571fa162b833c34e7d916ed7cbfdd47;d8483c5571f7ba5a48f8af42346cfa34 1313 8bb033860dc65262bfcf99d88aa7ca9e;6daa8a978cd53dd610988d53ee012fa4 SAMEA2521563 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600154/ERR600154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600154/ERR600154_2.fastq.gz 4845426 WGS 2012215849-sc-1946855 RANDOM 161551925;164756294 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600154/ERR600154_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600154/ERR600154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600154/13414_2#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600154/13414_2#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600154/ERR600154_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600154/ERR600154_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600154/13414_2#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600154/13414_2#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268737377;7934 ERS455103 ERX556983 GENOMIC 10600531 484542600 2014-09-16 SC_RUN_13414_2#12 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600154/13414_2#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600154/13414_2#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#12 ERR505640 SC_EXP_12291_3#5 215 36523bbd8118d7c4d7c524ae9f24f6ca;b188ea8d8d8605f9e50292f1bee1b3ce 1313 9acb8f02d4dd9620af9817fc298eda17;665ea831fc045b2e637af7a3aa45fcfd SAMEA2335847 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505640/ERR505640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505640/ERR505640_2.fastq.gz 4672626 WGS PATH3276-sc-1810773 RANDOM 142574974;148832737 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505640/ERR505640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505640/ERR505640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505640/12291_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505640/12291_3#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505640/ERR505640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505640/ERR505640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505640/12291_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505640/12291_3#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 240011364;7741 ERS394041 ERX470997 GENOMIC 9439854 467262600 2014-05-19 SC_RUN_12291_3#5 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505640/12291_3#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505640/12291_3#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#5 ERR596406 SC_EXP_13353_7#58 259 ae865d4aa76370a35fcd1cbc059f187f;3c460e933f22a96f554b40759a12ef33 1313 75d40f9e177461a959c131a734dea61e;44facab58d048accb430f193e3da0b26 SAMEA2521799 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596406/ERR596406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596406/ERR596406_2.fastq.gz 9023868 WGS 2013202624-sc-1947093 RANDOM 285345058;302514090 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596406/ERR596406_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596406/ERR596406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596406/13353_7#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596406/13353_7#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596406/ERR596406_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596406/ERR596406_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596406/13353_7#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596406/13353_7#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 490316257;14708 ERS455339 ERX553369 GENOMIC 10552853 902386800 2014-09-09 SC_RUN_13353_7#58 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596406/13353_7#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596406/13353_7#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#58 ERR505846 SC_EXP_12291_5#44 230 df936d60840e8655374be5172c62aa57;7c2de5c6695ac84ec693ca392d5fddc1 1313 b11ec74263f22a3bd487d3656938288d;94346015393fd8f020ebe5ac406bdd84 SAMEA2336066 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505846/ERR505846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505846/ERR505846_2.fastq.gz 4536352 WGS 2010220110-sc-1810996 RANDOM 138575295;144777572 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505846/ERR505846_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505846/ERR505846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505846/12291_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505846/12291_5#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505846/ERR505846_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505846/ERR505846_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505846/12291_5#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505846/12291_5#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230934343;7490 ERS394260 ERX471203 GENOMIC 9446417 453635200 2014-05-19 SC_RUN_12291_5#44 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505846/12291_5#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505846/12291_5#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#44 ERR505999 SC_EXP_12299_1#15 227 a0168fb9373a7912f8b5f4d5e9ed5397;ae325d2f3e0add43715f0773a056a77f 1313 15f620532b07f8eace981b4cee7a9f07;1114cc8b7dfe7829ba16d9f569f8c326 SAMEA2336127 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505999/ERR505999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505999/ERR505999_2.fastq.gz 6328900 WGS 2009215670-sc-1811057 RANDOM 206654413;211458426 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505999/ERR505999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505999/ERR505999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505999/12299_1#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505999/12299_1#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505999/ERR505999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505999/ERR505999_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505999/12299_1#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505999/12299_1#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 344869936;10434 ERS394321 ERX471356 GENOMIC 9446546 632890000 2014-05-19 SC_RUN_12299_1#15 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505999/12299_1#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505999/12299_1#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#15 ERR505808 SC_EXP_12291_5#6 230 b3db47c94fdc1670c0ef52cec23144d1;3d9f338ee188a506f474d934ad806c37 1313 7c6d4e8114682db29e8474d5e928947b;f7bf232b56b245698709dcd370c0827c SAMEA2336028 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505808/ERR505808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505808/ERR505808_2.fastq.gz 4305794 WGS 2010216137-sc-1810956 RANDOM 133606233;137721237 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505808/ERR505808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505808/ERR505808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505808/12291_5#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505808/12291_5#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505808/ERR505808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505808/ERR505808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505808/12291_5#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505808/12291_5#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 221197659;7022 ERS394222 ERX471165 GENOMIC 9446436 430579400 2014-05-19 SC_RUN_12291_5#6 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505808/12291_5#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505808/12291_5#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#6 ERR461829 SC_EXP_11893_1#1 234 76e6063662919e88a51bec8164509200;c286cb04bd61fb862e6b5231617b43ff 1313 fd5efaee9d7f373aea3ee574e802b955;8004b1ea316a50ce6830fdf28597cc6a SAMEA2238758 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461829/ERR461829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461829/ERR461829_2.fastq.gz 5511618 WGS 2100284-sc-2013-11-05T12:01:56Z-1750121 RANDOM 182458060;188052330 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461829/ERR461829_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461829/ERR461829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461829/11893_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461829/11893_1#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461829/ERR461829_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461829/ERR461829_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461829/11893_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461829/11893_1#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 307363234;9199 ERS367570 ERX428170 GENOMIC 9028124 551161800 2014-03-18 SC_RUN_11893_1#1 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461829/11893_1#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461829/11893_1#1.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#1 ERR461367 SC_EXP_11860_8#85 222 327d8eb1344b9a45a78addd7d3a3d641;b2a1b745fe25855aca8774dd8df7c4bb 1313 8d79c91f001dd80c3b1ea985aa8117f5;4b526ecec806a4ccbd3971ddde819dba SAMEA2239217 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461367/ERR461367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461367/ERR461367_2.fastq.gz 4067446 WGS 2010182-sc-2013-11-05T12:09:57Z-1750588 RANDOM 127503717;134394602 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461367/ERR461367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461367/ERR461367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461367/11860_8#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461367/11860_8#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461367/ERR461367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461367/ERR461367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461367/11860_8#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461367/11860_8#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 213726374;6707 ERS368029 ERX427708 GENOMIC 9015323 406744600 2014-03-18 SC_RUN_11860_8#85 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461367/11860_8#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461367/11860_8#85.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461484 SC_EXP_11861_2#17 216 7d2ffef7ad8b4fece404c4d47e8713da;3583e9132eaeab34c3a5f35c5c0c222d 1313 9f0c49bf0250e487cf50d90a638b5acc;d62bf6702e50cbaa198e82d5d591e21e SAMEA2238678 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461484/ERR461484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461484/ERR461484_2.fastq.gz 4985774 WGS 2091775-sc-2013-11-05T12:00:32Z-1750040 RANDOM 157139890;166084030 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461484/ERR461484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461484/ERR461484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461484/11861_2#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461484/11861_2#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461484/ERR461484_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461484/ERR461484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461484/11861_2#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461484/11861_2#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 265272381;8278 ERS367490 ERX427825 GENOMIC 9020856 498577400 2014-03-18 SC_RUN_11861_2#17 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461484/11861_2#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461484/11861_2#17.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#17 ERR461457 SC_EXP_11861_1#83 225 d9ef1b82a74ece738c3ba924ce9bdc0b;10e41f573393b5248b537d58a1b914c4 1313 f0329f185a7c0deca5993b08dfd399e4;f56712f882e5cd6ea0c3767f97715a35 SAMEA2238648 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461457/ERR461457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461457/ERR461457_2.fastq.gz 13286124 WGS 2090930-sc-2013-11-05T12:00:03Z-1750009 RANDOM 413566880;438140470 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461457/ERR461457_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461457/ERR461457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461457/11861_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461457/11861_1#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461457/ERR461457_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461457/ERR461457_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461457/11861_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461457/11861_1#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 715782939;21487 ERS367460 ERX427798 GENOMIC 9016142 1328612400 2014-03-18 SC_RUN_11861_1#83 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461457/11861_1#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461457/11861_1#83.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#83 ERR461460 SC_EXP_11861_1#86 225 6da313902f39f0545a1b4a3d3cba0295;445e1e0d146d5a2f298b04c931f3a00d 1313 0181923d7a03a746537e778344cbfeab;7fd0ab96911fedf5d56e05e5f8542c69 SAMEA2238651 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461460/ERR461460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461460/ERR461460_2.fastq.gz 11636398 WGS 2090937-sc-2013-11-05T12:00:06Z-1750012 RANDOM 367483037;389293866 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461460/ERR461460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461460/ERR461460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461460/11861_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461460/11861_1#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461460/ERR461460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461460/ERR461460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461460/11861_1#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461460/11861_1#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 638538322;18692 ERS367463 ERX427801 GENOMIC 9016178 1163639800 2014-03-18 SC_RUN_11861_1#86 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461460/11861_1#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461460/11861_1#86.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461821 SC_EXP_11861_5#84 221 5a236ca8e5ae82db5a6a3e4638e495fb;7cdd8cbc8073aafa13ffba0fae00fab4 1313 163224d1af3e3473c70e43ef87f8f14b;613eb75d5e844bf3da479ff94bea8448 SAMEA2239309 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461821/ERR461821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461821/ERR461821_2.fastq.gz 4590218 WGS 2071939-sc-2013-11-05T12:11:31Z-1750682 RANDOM 139589432;147489803 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461821/ERR461821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461821/ERR461821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461821/11861_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461821/11861_5#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461821/ERR461821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461821/ERR461821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461821/11861_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461821/11861_5#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 235148642;7610 ERS368121 ERX428162 GENOMIC 9017861 459021800 2014-03-18 SC_RUN_11861_5#84 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461821/11861_5#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461821/11861_5#84.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#84 ERR461429 SC_EXP_11861_1#54 225 ccf7956033ae85255ec448279ca50187;178e1caa21e58905550f0a1d084edcce 1313 c7e14791dc7139060543f56d6283d9f5;463ebfd292b72a85840b50f4943d0f73 SAMEA2238616 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461429/ERR461429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461429/ERR461429_2.fastq.gz 3312360 WGS 2090270-sc-2013-11-05T11:59:29Z-1749977 RANDOM 104593033;109326674 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461429/ERR461429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461429/ERR461429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461429/11861_1#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461429/11861_1#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461429/ERR461429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461429/ERR461429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461429/11861_1#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461429/11861_1#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 174629995;5524 ERS367428 ERX427770 GENOMIC 9016174 331236000 2014-03-18 SC_RUN_11861_1#54 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461429/11861_1#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461429/11861_1#54.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#54 ERR433723 SC_EXP_11657_8#30 250 331cfee5a969a6f57d153a32a683115e;f0ec69ab227775406e961b358f8f5712 1313 9368d6a98e57cd8f6c22d85965be7dd1;430e759f6dc07778e29ba5fefe25e3f9 SAMEA2204006 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433723/ERR433723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433723/ERR433723_2.fastq.gz 5160374 WGS 2009215743-sc-2013-10-09T11:53:29Z-1712597 RANDOM 179888933;183071496 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433723/ERR433723_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433723/ERR433723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433723/11657_8#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433723/11657_8#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433723/ERR433723_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433723/ERR433723_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433723/11657_8#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433723/11657_8#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 299773188;8469 ERS356517 ERX399998 GENOMIC 8657147 516037400 2014-02-18 SC_RUN_11657_8#30 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433723/11657_8#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433723/11657_8#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_8#30 ERR460966 SC_EXP_11860_4#52 217 f8427692c10aa156a7142de95a4f627d;dad6fb2a9f2642478f6c34bb75190ac0 1313 ff0a7ea978aeb3309f5eeb46e4414705;7964155e98d189219280c61f3f50e239 SAMEA2238325 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460966/ERR460966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460966/ERR460966_2.fastq.gz 4184324 WGS 2061532-sc-2013-11-05T11:54:37Z-1749683 RANDOM 134103498;140319073 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460966/ERR460966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460966/ERR460966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460966/11860_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460966/11860_4#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460966/ERR460966_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460966/ERR460966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460966/11860_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460966/11860_4#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 224323815;6862 ERS367137 ERX427307 GENOMIC 9012478 418432400 2014-03-18 SC_RUN_11860_4#52 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460966/11860_4#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460966/11860_4#52.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#52 ERR449198 SC_EXP_11826_1#10 238 22909a29aa9d0f477462346670c650e5;e00f64a18aec5f9951e42a41f5550685 1313 826b87a04f23699af2b992ebdf2d445f;7221d51a42dc1ec538180b4a5dccad52 SAMEA2163231 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449198/ERR449198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449198/ERR449198_2.fastq.gz 7595998 WGS 3913_99-sc-2013-07-03T13:31:46Z-1659274 RANDOM 243023672;247981352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449198/ERR449198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449198/ERR449198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449198/11826_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449198/11826_1#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449198/ERR449198_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449198/ERR449198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449198/11826_1#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449198/11826_1#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 404470025;12364 ERS322450 ERX415570 GENOMIC 8949107 759599800 2014-03-04 SC_RUN_11826_1#10 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449198/11826_1#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449198/11826_1#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#10 ERR433722 SC_EXP_11657_8#29 250 51e3635da96a880a5a7ee6a722c5cfed;fe305a5e206c1577a0e8b3fcdf6c58f0 1313 2ca4e6fb5f133c00388df689946844e1;33638e2d7a6bb37540296945c2f6ccad SAMEA2204002 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433722/ERR433722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433722/ERR433722_2.fastq.gz 5173198 WGS 2009215690-sc-2013-10-09T11:53:24Z-1712593 RANDOM 178448528;184038238 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433722/ERR433722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433722/ERR433722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433722/11657_8#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433722/11657_8#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433722/ERR433722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433722/ERR433722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433722/11657_8#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433722/11657_8#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297967231;8532 ERS356513 ERX399997 GENOMIC 8657135 517319800 2014-02-18 SC_RUN_11657_8#29 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433722/11657_8#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433722/11657_8#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_8#29 ERR433945 SC_EXP_11658_8#4 250 2d3db5f8ae866a08dec2de758ebb6925;e7410a1124978187a0b8468d29616d7d 1313 b4c958513f8fcae92f9f6c7bacbfbb80;18d9c0c728a4c14470f951285a3bbae5 SAMEA2203953 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433945/ERR433945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433945/ERR433945_2.fastq.gz 4693604 WGS 2009212862-sc-2013-10-09T11:52:29Z-1712544 RANDOM 151334460;153479404 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433945/ERR433945_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433945/ERR433945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433945/11658_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433945/11658_8#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433945/ERR433945_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433945/ERR433945_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433945/11658_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433945/11658_8#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249064605;7805 ERS356464 ERX400220 GENOMIC 8647226 469360400 2014-02-18 SC_RUN_11658_8#4 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433945/11658_8#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433945/11658_8#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_8#4 ERR433708 SC_EXP_11657_8#15 250 9504f093431674d4f00b2a12c3065e33;b64d0eb722976b49e8a86fd6ec286c93 1313 8a930e1bf26cb61ba8abc2c1e9f3f0e7;6b0e38c8124a294dac21c57756dcefd9 SAMEA2203862 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433708/ERR433708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433708/ERR433708_2.fastq.gz 5741398 WGS 2010220104-sc-2013-10-09T11:50:47Z-1712452 RANDOM 197777005;203268002 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433708/ERR433708_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433708/ERR433708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433708/11657_8#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433708/11657_8#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433708/ERR433708_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433708/ERR433708_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433708/11657_8#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433708/11657_8#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 330940667;9466 ERS356366 ERX399983 GENOMIC 8657157 574139800 2014-02-18 SC_RUN_11657_8#15 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433708/11657_8#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433708/11657_8#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_8#15 ERR340855 SC_EXP_10208_2#39 215 b07c9a7c1da982844e480b5e031d71a0 1313 fbf34629266ed93638c41c99ed0d2f30;104d172c93726e2dd8ed536f71952211 SAMEA2057555 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340855/ERR340855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340855/ERR340855_2.fastq.gz 2828371 WGS PBCN0440-sc-2013-03-27T13:21:12Z-1603751 RANDOM 188840805;214620323 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340855/ERR340855_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340855/ERR340855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340855/10208_2#39.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340855/ERR340855_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340855/ERR340855_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340855/10208_2#39.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 551435612 ERS225884 ERX313704 GENOMIC 7400653 565674200 2013-09-16 SC_RUN_10208_2#39 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340855/10208_2#39.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#39 ERR338188 SC_EXP_10071_4#24 215 01298abb98eaaf116fb0438fe42c2fd6 1313 ee8c1bb23a357160f362561aadd96f9c;d81250373f783b263d2893041fb3f5dd SAMEA2059885 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338188/ERR338188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338188/ERR338188_2.fastq.gz 1484973 WGS PBCN0315-sc-2013-03-27T13:19:31Z-1603648 RANDOM 95731456;99533713 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338188/ERR338188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338188/ERR338188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338188/10071_4#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338188/ERR338188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338188/ERR338188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338188/10071_4#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 271538807 ERS225782 ERX311093 GENOMIC 7400566 296994600 2013-09-03 SC_RUN_10071_4#24 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338188/10071_4#24.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#24 ERR338185 SC_EXP_10071_4#21 215 e7e322bd52b65dd72d9f37a88ad9b26a 1313 25cdda31a481ce3d7968385acac43a4a;f1d65fad0992f778a10b2d78f996e94a SAMEA2059883 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338185/ERR338185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338185/ERR338185_2.fastq.gz 1397274 WGS PBCN0312-sc-2013-03-27T13:19:28Z-1603645 RANDOM 90369713;93889915 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338185/ERR338185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338185/ERR338185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338185/10071_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338185/ERR338185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338185/ERR338185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338185/10071_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 256300916 ERS225779 ERX311090 GENOMIC 7400530 279454800 2013-09-03 SC_RUN_10071_4#21 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338185/10071_4#21.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#21 ERR425471 SC_EXP_11511_8#34 288 351a088de7a84a2603818935dbc9f6ee;cc090b104d8cd1dc92a5374a3818a028 1313 055f87e567d911fe9da61879c15c0bd1;d8fa4633bfb4b04804a3e1b2d0ccc7a9 SAMEA2203886 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425471/ERR425471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425471/ERR425471_2.fastq.gz 2960944 WGS 2009206439-sc-2013-10-09T11:51:12Z-1712476 RANDOM 96944306;98985751 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425471/ERR425471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425471/ERR425471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425471/11511_8#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425471/11511_8#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425471/ERR425471_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425471/ERR425471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425471/11511_8#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425471/11511_8#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 159351693;4925 ERS356390 ERX391746 GENOMIC 8529199 296094400 2014-02-10 SC_RUN_11511_8#34 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425471/11511_8#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425471/11511_8#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_8#34 ERR331436 SC_EXP_10050_2#46 224 661f3ced482330658366e2d131974a86 1313 67eeb3c5f6085bfea36871bb32ff50e0;ea7805a9b73a1b0c5a8fb95c88f97b25 SAMEA1968085 2013-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331436/ERR331436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331436/ERR331436_2.fastq.gz 1666195 WGS PBCN0085-sc-2013-03-27T13:16:54Z-1603492 RANDOM 108095271;117188182 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331436/ERR331436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331436/ERR331436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331436/10050_2#46.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331436/ERR331436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331436/ERR331436_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331436/10050_2#46.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 311694809 ERS225628 ERX304365 GENOMIC 7376954 333239000 2013-08-27 SC_RUN_10050_2#46 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR331/ERR331436/10050_2#46.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA247607 10050_2#46 ERR048052 SC_EXP_6631_1#15 217 f4b08672f3805a68756061642c5e5b0f 1313 ba93c4980cd361713494c2b7b1383d93;cf53559d1cb13e9e151e188fa0b7feb9 SAMEA1023915 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048052/ERR048052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048052/ERR048052_2.fastq.gz 5552552 WGS SMRU327-sc-2011-01-27-1060516 RANDOM 315662480;312905298 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048052/ERR048052_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048052/ERR048052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048052/6631_1#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048052/ERR048052_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048052/ERR048052_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048052/6631_1#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 800227728 ERS019485 ERX025115 GENOMIC 2952114 832882800 2011-10-11 SC_RUN_6631_1#15 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048052/6631_1#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR050051 SC_EXP_6680_7#20 229 b4a9cc9ce3f3eb68292535659086caec 1313 87d09309432b838b198ea5e5dff797b4;c9fbd33ab0dac012f07954c90162cc58 SAMEA1024799 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050051/ERR050051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050051/ERR050051_2.fastq.gz 5840552 WGS SMRU980-sc-2011-01-27-1061193 RANDOM 321040889;335827993 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050051/ERR050051_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050051/ERR050051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050051/6680_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050051/ERR050051_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050051/ERR050051_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050051/6680_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 840754474 ERS020490 ERX027111 GENOMIC 3178899 876082800 2011-11-07 SC_RUN_6680_7#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050051/6680_7#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR047964 SC_EXP_6630_1#23 215 26bc235dfd40ec705173cd4983a88dbd 1313 103873a196ef17890e65746ac143d28e;7dd05cbd1f2a8a4c5ef9b97d708c1cf9 SAMEA1023832 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047964/ERR047964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047964/ERR047964_2.fastq.gz 2679828 WGS SMRU287-sc-2011-01-27-1060476 RANDOM 161420221;163414822 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047964/ERR047964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047964/ERR047964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047964/6630_1#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047964/ERR047964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047964/ERR047964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047964/6630_1#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 418975217 ERS019445 ERX025027 GENOMIC 2952074 401974200 2011-10-11 SC_RUN_6630_1#23 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047964/6630_1#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR052582 SC_EXP_6673_8#5 221 2fb25f0b00d47bb9c91649d3c1f80f2b 1313 fb7016d53d801eb168d3fbcb64fa1cdd;66a1db5d2ce27a37ad3130c1d5863fbb SAMEA1024052 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052582/ERR052582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052582/ERR052582_2.fastq.gz 6569436 WGS SMRU245-sc-2011-01-27-1060434 RANDOM 353322137;382628514 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052582/ERR052582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052582/ERR052582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052582/6673_8#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052582/ERR052582_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052582/ERR052582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052582/6673_8#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 932357143 ERS019403 ERX029630 GENOMIC 2950583 985415400 2011-11-07 SC_RUN_6673_8#5 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052582/6673_8#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR326694 SC_EXP_9953_7#5 227 17a2c8eb8e9bf55ab0fcbdfb1b83d3e0 1313 1e0591e22c9f7142192b4f6cdcca2f2c;ba0c726f9fe6f57f85db3530ee427246 SAMEA2059550 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326694/ERR326694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326694/ERR326694_2.fastq.gz 2402710 WGS PBCN0145-sc-2013-03-27T13:17:45Z-1603539 RANDOM 162645497;162274922 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326694/ERR326694_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326694/ERR326694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326694/9953_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326694/ERR326694_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326694/ERR326694_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326694/9953_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 452613495 ERS225675 ERX299794 GENOMIC 7376840 480542000 2013-08-14 SC_RUN_9953_7#5 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326694/9953_7#5.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#5 ERR2305642 SC_EXP_23495_7#86 397 1272d37bb76897553ab67f63a2876f2a;ac71ed17ac8fb20288892916a0a51ad2 1313 2abd612a6eb06a596d0b38815ae4555d;ed4205c27f7f0f93c35503fb9b79d9e7 SAMEA104034866 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305642/ERR2305642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305642/ERR2305642_2.fastq.gz 1725702 WGS f62aa5b0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 47820497;54139406 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305642/ERR2305642_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305642/ERR2305642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305642/23495_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305642/23495_7#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305642/ERR2305642_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305642/ERR2305642_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305642/23495_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305642/23495_7#86.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 72596723;3038 ERS1698759 ERX2356952 GENOMIC DN483688I:F11 260581002 2018-02-16 SC_RUN_23495_7#86 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305642/23495_7#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305642/23495_7#86.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808833 ERR2305643 SC_EXP_23495_7#87 396 7d6dc6d17f78bdb6c3cf4786c7a89062;47179ba345c87286d921bbd5c130d26e 1313 7ebb5d81369a1b1a2e5d6288f2b5c308;8a3d4a0118d348a433391e5a87b9cf80 SAMEA104034867 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305643/ERR2305643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305643/ERR2305643_2.fastq.gz 1631674 WGS f632bc00-13c3-11e7-942b-3c4a9275d6c8 RANDOM 47784223;53840064 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305643/ERR2305643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305643/ERR2305643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305643/23495_7#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305643/23495_7#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305643/ERR2305643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305643/ERR2305643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305643/23495_7#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305643/23495_7#87.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 72694714;2851 ERS1698760 ERX2356953 GENOMIC DN483688I:G11 246382774 2018-02-16 SC_RUN_23495_7#87 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305643/23495_7#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305643/23495_7#87.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808834 ERR2305571 SC_EXP_23495_7#15 390 12b3b0813fa4b8a29d6225ee9df04aad;c216eb20bb223060e389065560653624 1313 8eeaca9236f1e6be6e2488aa98692155;56d9afeaaaf95edcaab0b9521092e8af SAMEA104034794 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305571/ERR2305571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305571/ERR2305571_2.fastq.gz 2030972 WGS f3a58170-13c3-11e7-942b-3c4a9275d6c8 RANDOM 55688282;62175345 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305571/ERR2305571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305571/ERR2305571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305571/23495_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305571/23495_7#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305571/ERR2305571_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305571/ERR2305571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305571/23495_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305571/23495_7#15.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 84263896;3503 ERS1698687 ERX2356881 GENOMIC DN483688I:G2 306676772 2018-02-16 SC_RUN_23495_7#15 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305571/23495_7#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305571/23495_7#15.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808761 ERR2305635 SC_EXP_23495_7#79 390 ce6fbf9d18cb4d2ee35abc8eac21eec6;9ff97691a1ac9d5719ea5337675f7b35 1313 e1ad184426ee6b9202e6f04906e96e7c;c140a86200a77cc4b6f4239f30991d35 SAMEA104034859 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305635/ERR2305635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305635/ERR2305635_2.fastq.gz 1860502 WGS f5ee8710-13c3-11e7-942b-3c4a9275d6c8 RANDOM 51429855;57215215 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305635/ERR2305635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305635/ERR2305635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305635/23495_7#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305635/23495_7#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305635/ERR2305635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305635/ERR2305635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305635/23495_7#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305635/23495_7#79.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 77604626;3221 ERS1698752 ERX2356945 GENOMIC DN483688I:G10 280935802 2018-02-16 SC_RUN_23495_7#79 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305635/23495_7#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305635/23495_7#79.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808826 ERR2305456 SC_EXP_22709_8#369 443 6b3bbd306aab6eb15482bd240fee97e8;1b2122ca190f8bb6efe236b4b3edd42d 1313 f8015f9cec65aa5a633e2cbe84223708;992a579faafc42eb4a657743cf1af040 SAMEA104034583 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305456/ERR2305456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305456/ERR2305456_2.fastq.gz 2367558 WGS e0859210-13c3-11e7-942b-3c4a9275d6c8 RANDOM 59222222;85369310 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305456/ERR2305456_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305456/ERR2305456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305456/22709_8#369.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305456/22709_8#369.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305456/ERR2305456_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305456/ERR2305456_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305456/22709_8#369.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305456/22709_8#369.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105623732;3980 ERS1698476 ERX2356766 GENOMIC DN477148T:A12 357501258 2018-02-16 SC_RUN_22709_8#369 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305456/22709_8#369.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305456/22709_8#369.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808547 ERR2305452 SC_EXP_22709_8#365 439 628947f05a75b8e72c268e8826023356;ba17a3d02d34ae5341afae21b5e5f96d 1313 8b3615a50f2e599fcadbfce812de3b21;253a01d40a0b148035c18d4c342da437 SAMEA104034579 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305452/ERR2305452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305452/ERR2305452_2.fastq.gz 2388576 WGS e06056d0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 55955091;82585155 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305452/ERR2305452_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305452/ERR2305452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305452/22709_8#365.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305452/22709_8#365.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305452/ERR2305452_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305452/ERR2305452_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305452/22709_8#365.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305452/22709_8#365.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 101023357;4094 ERS1698472 ERX2356762 GENOMIC DN477148T:E11 360674976 2018-02-16 SC_RUN_22709_8#365 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305452/22709_8#365.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305452/22709_8#365.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808543 ERR2305451 SC_EXP_22709_8#364 430 1b6bf6724aa6d8a034f5d7c12308526a;915de87d08cff8bbc1bedec139111431 1313 6733352363715d146b549b1484ded569;0b7b11c8c48e6a0c8f99224c61e9c08d SAMEA104034578 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305451/ERR2305451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305451/ERR2305451_2.fastq.gz 2286586 WGS e056b9e0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 53635239;78203706 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305451/ERR2305451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305451/ERR2305451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305451/22709_8#364.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305451/22709_8#364.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305451/ERR2305451_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305451/ERR2305451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305451/22709_8#364.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305451/22709_8#364.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 96191598;3877 ERS1698471 ERX2356761 GENOMIC DN477148T:D11 345274486 2018-02-16 SC_RUN_22709_8#364 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305451/22709_8#364.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305451/22709_8#364.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808542 ERR2305411 SC_EXP_22709_8#324 444 e789f765fed07a17f435fd76aef35fe7;b2c9424a1897c5bb90b38e6e32fdf094 1313 f410b0a0a98fbc85435b3018ed0c02a7;79bbf544ddf41031e3a4cfa48fb63b88 SAMEA104034538 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305411/ERR2305411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305411/ERR2305411_2.fastq.gz 2453208 WGS def9e900-13c3-11e7-942b-3c4a9275d6c8 RANDOM 57394863;84643217 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305411/ERR2305411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305411/ERR2305411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305411/22709_8#324.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305411/22709_8#324.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305411/ERR2305411_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305411/ERR2305411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305411/22709_8#324.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305411/22709_8#324.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103584247;4194 ERS1698431 ERX2356721 GENOMIC DN477148T:D6 370434408 2018-02-16 SC_RUN_22709_8#324 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305411/22709_8#324.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305411/22709_8#324.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808502 ERR2305433 SC_EXP_22709_8#346 452 ea0822de30d7435a733b9d8ed77a6189;f2a839b48f35a7615239c19f3bd66733 1313 5171ce922e13255d471ef07e5b176cf4;e6607f69dc5f76544e303dd1bc322233 SAMEA104034553 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305433/ERR2305433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305433/ERR2305433_2.fastq.gz 2193908 WGS dfab85c0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 51927778;76473338 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305433/ERR2305433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305433/ERR2305433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305433/22709_8#346.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305433/22709_8#346.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305433/ERR2305433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305433/ERR2305433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305433/22709_8#346.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305433/22709_8#346.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92993607;3756 ERS1698446 ERX2356743 GENOMIC DN477148T:B9 331280108 2018-02-16 SC_RUN_22709_8#346 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305433/22709_8#346.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305433/22709_8#346.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808524 ERR2305264 SC_EXP_22695_3#223 417 61ab3a478d06d914f6c7da88ec65affd;03fe94c39fcedc5d25719eeb93aaf930 1313 95dc42b451ae9371be4b4f05e956e21c;76a27c81a17bb2d36312e50486b96e20 SAMEA104034907 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305264/ERR2305264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305264/ERR2305264_2.fastq.gz 2184424 WGS fb6a5610-13c3-11e7-942b-3c4a9275d6c8 RANDOM 57542238;77556992 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305264/ERR2305264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305264/ERR2305264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305264/22695_3#223.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305264/22695_3#223.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305264/ERR2305264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305264/ERR2305264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305264/22695_3#223.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305264/22695_3#223.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 98222090;3756 ERS1698800 ERX2356574 GENOMIC DN477146R:A5 329848024 2018-02-16 SC_RUN_22695_3#223 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305264/22695_3#223.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305264/22695_3#223.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808875 ERR2305286 SC_EXP_22695_3#245 428 a895a888c41e1cee21aab5ccfbf5a476;ccac048cfbe6f63f6c23281cfeea3f2a 1313 e55b212566a68aced3cb69d422ddfe55;e68b691f1e38babb109214a08737356a SAMEA104034929 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305286/ERR2305286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305286/ERR2305286_2.fastq.gz 2163216 WGS fc23e210-13c3-11e7-942b-3c4a9275d6c8 RANDOM 58216660;79701873 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305286/ERR2305286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305286/ERR2305286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305286/22695_3#245.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305286/22695_3#245.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305286/ERR2305286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305286/ERR2305286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305286/22695_3#245.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305286/22695_3#245.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100262409;3672 ERS1698822 ERX2356596 GENOMIC DN477146R:G7 326645616 2018-02-16 SC_RUN_22695_3#245 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305286/22695_3#245.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305286/22695_3#245.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808897 ERR2305360 SC_EXP_22695_3#319 426 6aff97dffee0e018921b61b1a05ed997;ca6d2795951aea1aa486d3b5ca819ad6 1313 90a2d187820e28d5096d15b13289aaf4;cb5f553e614208aaba18b70da05cfffe SAMEA104035098 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305360/ERR2305360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305360/ERR2305360_2.fastq.gz 2661164 WGS 09cff1b0-13c4-11e7-942b-3c4a9275d6c8 RANDOM 69866485;94731170 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305360/ERR2305360_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305360/ERR2305360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305360/22695_3#319.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305360/22695_3#319.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305360/ERR2305360_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305360/ERR2305360_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305360/22695_3#319.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305360/22695_3#319.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 120146411;4508 ERS1698991 ERX2356670 GENOMIC DN477147S:B5 401835764 2018-02-16 SC_RUN_22695_3#319 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305360/22695_3#319.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305360/22695_3#319.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809068 ERR2305320 SC_EXP_22695_3#279 427 e25805c4348585c1b097b79b620f25d8;4046e55e043b973669c0f42de6ef7ae8 1313 c8f701dbd53d1f7881620df6affb6944;aca3d8fd8482abc1a4eca7353600c7ba SAMEA104034963 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305320/ERR2305320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305320/ERR2305320_2.fastq.gz 2092874 WGS fd43f810-13c3-11e7-942b-3c4a9275d6c8 RANDOM 55200397;75822827 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305320/ERR2305320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305320/ERR2305320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305320/22695_3#279.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305320/22695_3#279.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305320/ERR2305320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305320/ERR2305320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305320/22695_3#279.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305320/22695_3#279.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 95617754;3619 ERS1698856 ERX2356630 GENOMIC DN477146R:A12 316023974 2018-02-16 SC_RUN_22695_3#279 93 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305320/22695_3#279.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305320/22695_3#279.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808931 ERR2305292 SC_EXP_22695_3#251 401 13382e4a7c6fd40e71011ab5fa6b34e0;86503a64f92a308996af4bee20ee9a33 1313 f3d45e79a6c0c029988b1cdac933c113;0e5ee24358c25ed924382d18ca01713d SAMEA104034935 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305292/ERR2305292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305292/ERR2305292_2.fastq.gz 2604546 WGS fc548f00-13c3-11e7-942b-3c4a9275d6c8 RANDOM 67851768;90048837 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305292/ERR2305292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305292/ERR2305292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305292/22695_3#251.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305292/22695_3#251.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305292/ERR2305292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305292/ERR2305292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305292/22695_3#251.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305292/22695_3#251.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 115113803;4411 ERS1698828 ERX2356602 GENOMIC DN477146R:E8 393286446 2018-02-16 SC_RUN_22695_3#251 92 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305292/22695_3#251.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305292/22695_3#251.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808903 ERR2305221 SC_EXP_22695_3#180 422 92c4d20b7085c40aeae05e64097ea504;ca4db9cc2038bc5f03cf1bc1f771f5a3 1313 b71a663f550f688104240bbec7a3fa9f;87f59550a0db43653591d78483be2551 SAMEA104034769 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305221/ERR2305221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305221/ERR2305221_2.fastq.gz 2318264 WGS eed3ae10-13c3-11e7-942b-3c4a9275d6c8 RANDOM 60610154;82652357 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305221/ERR2305221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305221/ERR2305221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305221/22695_3#180.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305221/22695_3#180.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305221/ERR2305221_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305221/ERR2305221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305221/22695_3#180.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305221/22695_3#180.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104310184;3953 ERS1698662 ERX2356531 GENOMIC DN477141M:E11 350057864 2018-02-16 SC_RUN_22695_3#180 92 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305221/22695_3#180.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305221/22695_3#180.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808735 ERR2091287 SC_EXP_22841_4#178 437 d98e2761dd543b8a16809012966c1158;6b6cb496ca4e46e95a18372902a0dfcc 1313 ce765728ea17373a130de970371e4c5c;b71f84651b851eb886e54fd382375895 SAMEA104035485 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091287/ERR2091287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091287/ERR2091287_2.fastq.gz 2666066 WGS a2680220-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51901042;57884578 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091287/ERR2091287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2091287/ERR2091287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091287/22841_4#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091287/22841_4#178.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2091287/ERR2091287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2091287/ERR2091287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091287/22841_4#178.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091287/22841_4#178.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76696973;4447 ERS1699378 ERX2148081 GENOMIC DN477153Q:D11 333258250 2017-08-08 SC_RUN_22841_4#178 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091287/22841_4#178.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091287/22841_4#178.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#178 ERR2091300 SC_EXP_23164_8#74 413 3446690ddbde2592d66476ec0c535932;96ad8bb506908a692b302cdff203a64a 1313 a365c33701dcdac8cb099d94b282525a;855cdb8796c5a4bc32da25bcc355b4e9 SAMEA104035491 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091300/ERR2091300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091300/ERR2091300_2.fastq.gz 3078166 WGS a2a30f50-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60969995;63087215 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091300/ERR2091300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2091300/ERR2091300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091300/23164_8#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091300/23164_8#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091300/ERR2091300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2091300/ERR2091300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091300/23164_8#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091300/23164_8#74.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86280972;5087 ERS1699384 ERX2148094 GENOMIC DN488670S:C1 384770750 2017-08-08 SC_RUN_23164_8#74 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091300/23164_8#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091300/23164_8#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 23164_8#74 ERR2091186 SC_EXP_22841_4#77 449 c4274ce8c6e1d93530c543265d700405;d3166f00f6732518a6f86729c851aca7 1313 d659ff80fe7af83da1f59ee3dff5e588;e76bd8055e909b4235eaaad43f229a69 SAMEA104035383 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091186/ERR2091186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091186/ERR2091186_2.fastq.gz 2760426 WGS 99ffe8a0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55262506;58941650 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091186/ERR2091186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091186/ERR2091186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091186/22841_4#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091186/22841_4#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091186/ERR2091186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091186/ERR2091186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091186/22841_4#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091186/22841_4#77.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80041275;4605 ERS1699276 ERX2147980 GENOMIC DN477152P:E10 345053250 2017-08-08 SC_RUN_22841_4#77 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091186/22841_4#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091186/22841_4#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#77 ERR2091199 SC_EXP_22841_4#90 456 3d4a16200402ee30cdf01175980e5b78;ae0168694872899e1640aeb3ac6bca18 1313 ac58bb3befa7853f94350f7010f4b562;408d1acf5c4065104f46b647b9ee58c7 SAMEA104035396 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091199/ERR2091199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091199/ERR2091199_2.fastq.gz 2328790 WGS 9a82d440-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 48946965;50029557 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091199/ERR2091199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091199/ERR2091199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091199/22841_4#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091199/22841_4#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091199/ERR2091199_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091199/ERR2091199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091199/22841_4#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091199/22841_4#90.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69225572;3917 ERS1699289 ERX2147993 GENOMIC DN477152P:B12 291098750 2017-08-08 SC_RUN_22841_4#90 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091199/22841_4#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091199/22841_4#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#90 ERR2091161 SC_EXP_22841_4#52 444 9589bdf64927526eda1935047a176146;e99af3ce141bb9c12af12f292079ebe7 1313 80e01a3caf148af8ba024b2d2265c5d5;fbdf0dd0e8a5e9bd399eda6ac26d7df8 SAMEA104035358 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091161/ERR2091161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091161/ERR2091161_2.fastq.gz 2437104 WGS 98f7a060-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49215862;51603270 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091161/ERR2091161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2091161/ERR2091161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091161/22841_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091161/22841_4#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091161/ERR2091161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2091161/ERR2091161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091161/22841_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091161/22841_4#52.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70109594;4109 ERS1699251 ERX2147955 GENOMIC DN477152P:D7 304638000 2017-08-08 SC_RUN_22841_4#52 112 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091161/22841_4#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091161/22841_4#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#52 ERR2091158 SC_EXP_22841_4#49 444 d8e242cbd2cfbccf67d96539aede40b8;13ec3b69e31da094908aad7e35a41ff7 1313 c9ff45b5e1ecb54f352a5917ff183fe3;5b831a1a61907a3a026916ecf49388e3 SAMEA104035355 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2091158/ERR2091158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2091158/ERR2091158_2.fastq.gz 2336648 WGS 98d76e30-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 48112209;49662939 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2091158/ERR2091158_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2091158/ERR2091158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091158/22841_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091158/22841_4#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2091158/ERR2091158_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2091158/ERR2091158_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091158/22841_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091158/22841_4#49.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68154686;3921 ERS1699248 ERX2147952 GENOMIC DN477152P:A7 292081000 2017-08-08 SC_RUN_22841_4#49 110 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091158/22841_4#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091158/22841_4#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#49 ERR2090847 SC_EXP_22841_2#116 390 a692e6e483f941f5c840820554737ce5;586c9e37b6f50980befd347600208ebf 1313 8cddb14cb05ae71c9f1543fccbe65f07;8ed4fbb9572482a9cca26994d5fc01b5 SAMEA104035695 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090847/ERR2090847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090847/ERR2090847_2.fastq.gz 2649874 WGS b89e3230-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 56815501;61729207 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090847/ERR2090847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090847/ERR2090847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090847/22841_2#116.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090847/22841_2#116.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090847/ERR2090847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090847/ERR2090847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090847/22841_2#116.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090847/22841_2#116.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83285459;4433 ERS1699588 ERX2147641 GENOMIC DN483654V:E3 331234250 2017-08-08 SC_RUN_22841_2#116 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090847/22841_2#116.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090847/22841_2#116.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#116 ERR2091113 SC_EXP_22841_4#4 448 624daaeaf2917d2f6d76fffba3c21d4e;908ac5dbecb328f8cdcfc98f0ef08a39 1313 175cb7aca820583c84acaff571dfc54d;e3708b09e02564dabef31309173240d9 SAMEA104035324 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091113/ERR2091113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091113/ERR2091113_2.fastq.gz 2458588 WGS 970657b0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 50368270;51938149 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091113/ERR2091113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091113/ERR2091113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091113/22841_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091113/22841_4#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091113/ERR2091113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091113/ERR2091113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091113/22841_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091113/22841_4#4.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71153628;4131 ERS1699217 ERX2147907 GENOMIC DN477152P:D1 307323500 2017-08-08 SC_RUN_22841_4#4 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091113/22841_4#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091113/22841_4#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#4 ERR2090890 SC_EXP_22841_2#159 391 3ba454cbbd5ef4b3af1e2eb1056c0fad;730969d19551d5a7ae2127cc82dd6cdb 1313 f0bd2eb63b8223b8ebbdc09c146b5a25;9e4e7936e1b8655f2dce2313c4320874 SAMEA104035742 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090890/ERR2090890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090890/ERR2090890_2.fastq.gz 2558566 WGS ba96a6d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55213029;58978409 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090890/ERR2090890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090890/ERR2090890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090890/22841_2#159.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090890/22841_2#159.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090890/ERR2090890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090890/ERR2090890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090890/22841_2#159.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090890/22841_2#159.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79957002;4288 ERS1699635 ERX2147684 GENOMIC DN483654V:H8 319820750 2017-08-08 SC_RUN_22841_2#159 98 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090890/22841_2#159.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090890/22841_2#159.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#159 ERR2090830 SC_EXP_22841_2#99 394 dcd93e7b5bb6632b9ae4decb01d62ad1;ded6b71c7809e99d0e226447e7551900 1313 0e205ea3299766f34fe224908a95370a;7273d2d69bab05caeab5b332249f4089 SAMEA104035678 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090830/ERR2090830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090830/ERR2090830_2.fastq.gz 2585862 WGS b38088c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55812323;60001159 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090830/ERR2090830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090830/ERR2090830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090830/22841_2#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090830/22841_2#99.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090830/ERR2090830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090830/ERR2090830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090830/22841_2#99.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090830/22841_2#99.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81047467;4321 ERS1699571 ERX2147624 GENOMIC DN483654V:D1 323232750 2017-08-08 SC_RUN_22841_2#99 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090830/22841_2#99.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090830/22841_2#99.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#99 ERR2090788 SC_EXP_22841_2#57 397 e7fd2db1a3c952e006abe5de34b78b73;28413d8a674b0195350c65385f7bfc70 1313 ed9e8fee526e112633ad24278ae88884;d4b44c34dc85532fc2944426aff6aca9 SAMEA104035636 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090788/ERR2090788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090788/ERR2090788_2.fastq.gz 2445730 WGS b1df0dc0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 54054533;55588779 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090788/ERR2090788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090788/ERR2090788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090788/22841_2#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090788/22841_2#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090788/ERR2090788_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090788/ERR2090788_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090788/22841_2#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090788/22841_2#57.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76567917;4102 ERS1699529 ERX2147582 GENOMIC DN483653U:A8 305716250 2017-08-08 SC_RUN_22841_2#57 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090788/22841_2#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090788/22841_2#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#57 ERR1947195 SC_EXP_21903_8#41 427 1f731aeebd0c62ae262b3e996860da64;a5e41bf5678626648cb02693c62bc0f7 1313 99276f2041f6f17b687c43105a705941;d7c57db86370ee3ff54a3b3266f1b896 SAMEA4561221 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947195/ERR1947195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947195/ERR1947195_2.fastq.gz 2698620 WGS 13e82c50-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 64655613;96222568 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947195/ERR1947195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947195/ERR1947195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947195/21903_8#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947195/21903_8#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947195/ERR1947195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947195/ERR1947195_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947195/21903_8#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947195/21903_8#41.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 117324790;4590 ERS1460400 ERX2012982 GENOMIC 18430194 407491620 2017-04-25 SC_RUN_21903_8#41 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947195/21903_8#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947195/21903_8#41.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR2090751 SC_EXP_22841_2#20 411 415d4381a9ebf114a059a7bbe20bef26;02558cfbc9db9766ad0f4f670c3ca827 1313 be5d1f6d62738e4cb04f8748d12ca90a;38cfa588f7b0f1f5e04159975e42849c SAMEA104035597 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090751/ERR2090751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090751/ERR2090751_2.fastq.gz 2723804 WGS b0381480-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62510919;65619919 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090751/ERR2090751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090751/ERR2090751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090751/22841_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090751/22841_2#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090751/ERR2090751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090751/ERR2090751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090751/22841_2#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090751/22841_2#20.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90671060;4440 ERS1699490 ERX2147545 GENOMIC DN483653U:D3 340475500 2017-08-08 SC_RUN_22841_2#20 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090751/22841_2#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090751/22841_2#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#20 ERR2090591 SC_EXP_22841_1#50 430 98f769de851e93b2ac4397e266e6109e;63751f51a88c04ff6c4bb1833ef31493 1313 103c703f347f9e37ac0ff8a512384b5e;2b54c59aae04d1e7dd0dfeeb22dcd9dc SAMEA104035245 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090591/ERR2090591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090591/ERR2090591_2.fastq.gz 1796794 WGS 90270110-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 35242086;36678937 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090591/ERR2090591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090591/ERR2090591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090591/22841_1#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090591/22841_1#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090591/ERR2090591_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090591/ERR2090591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090591/22841_1#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090591/22841_1#50.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 49022287;3076 ERS1699138 ERX2147385 GENOMIC DN477155S:B7 224599250 2017-08-08 SC_RUN_22841_1#50 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090591/22841_1#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090591/22841_1#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#50 ERR1947190 SC_EXP_21903_8#36 438 c5fb126f0d1fd135b781798dd7f78d49;567f835801beaf24c1bd9398e86eee82 1313 2dadd2b10d74092ed281a6fa176ef52a;14da493a27fd8de557435b8ff7287fe4 SAMEA4561216 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947190/ERR1947190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947190/ERR1947190_2.fastq.gz 2055002 WGS 13b646e0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 51008961;74993505 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947190/ERR1947190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947190/ERR1947190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947190/21903_8#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947190/21903_8#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947190/ERR1947190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947190/ERR1947190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947190/21903_8#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947190/21903_8#36.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92058702;3494 ERS1460395 ERX2012977 GENOMIC 18430229 310305302 2017-04-25 SC_RUN_21903_8#36 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947190/21903_8#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947190/21903_8#36.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR461072 SC_EXP_11860_5#69 210 87c6eb2bc7fd8e8199c7bfe02edc6eef;57839bedfd97e13e52472dbb8b8c6661 1313 fbf0cccb35c5eca5d8ef488349973800;8b6e1f62339356ff3d7a9081da4be67d SAMEA2238438 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461072/ERR461072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461072/ERR461072_2.fastq.gz 2299068 WGS 2071445-sc-2013-11-05T11:56:24Z-1749797 RANDOM 61034183;64446701 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461072/ERR461072_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461072/ERR461072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461072/11860_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461072/11860_5#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461072/ERR461072_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461072/ERR461072_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461072/11860_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461072/11860_5#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 99504160;3854 ERS367250 ERX427413 GENOMIC 9014539 229906800 2014-03-18 SC_RUN_11860_5#69 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461072/11860_5#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461072/11860_5#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#69 ERR600202 SC_EXP_13414_2#69 233 5c2b148ecd60883bf3589b1abd478eac;a1a7e198f9873340f1fc8c8e56c40e87 1313 1cec9a896055db561a9e0e3b9ca5a3c5;d58ae3fccc2e52152fb98ec83bce6872 SAMEA2521620 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600202/ERR600202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600202/ERR600202_2.fastq.gz 5416704 WGS 2012219972-sc-1946912 RANDOM 179461544;184826694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600202/ERR600202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600202/ERR600202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600202/13414_2#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600202/13414_2#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600202/ERR600202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600202/ERR600202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600202/13414_2#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600202/13414_2#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302197840;8868 ERS455160 ERX557031 GENOMIC 10600550 541670400 2014-09-16 SC_RUN_13414_2#69 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600202/13414_2#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600202/13414_2#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#69 ERR600176 SC_EXP_13414_2#42 233 551a48bf3a233cc78d3b2df67fb1d54d;81e6da72f801f76ac33dad2915f0c36c 1313 efc4283f3cf827d0d865d25ef58d0504;5bcdedbc8b7e76306be0de3602945f73 SAMEA2521593 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600176/ERR600176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600176/ERR600176_2.fastq.gz 5225346 WGS 2013202261-sc-1946885 RANDOM 176150547;179128124 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600176/ERR600176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600176/ERR600176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600176/13414_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600176/13414_2#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600176/ERR600176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600176/ERR600176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600176/13414_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600176/13414_2#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291666868;8471 ERS455133 ERX557005 GENOMIC 10600511 522534600 2014-09-16 SC_RUN_13414_2#42 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600176/13414_2#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600176/13414_2#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#42 ERR600299 SC_EXP_13414_4#31 250 bea6e531e1acc408eff77ad3a644fd21;50f793fb361aab71ee0ed154702d0044 1313 448e56ef403e511b82ff0afb95b9955b;7ac0b5b2d316dd0b6d7d73166cc3581f SAMEA2521867 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600299/ERR600299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600299/ERR600299_2.fastq.gz 8625744 WGS 3666_06-sc-1947163 RANDOM 251157836;255290458 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600299/ERR600299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600299/ERR600299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600299/13414_4#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600299/13414_4#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600299/ERR600299_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600299/ERR600299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600299/13414_4#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600299/13414_4#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 413397155;13952 ERS455407 ERX557128 GENOMIC 10614695 862574400 2014-09-16 SC_RUN_13414_4#31 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600299/13414_4#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600299/13414_4#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_4#31 ERR461245 SC_EXP_11860_7#56 206 34313181261c5883c36d93832660bb34;afc4a49bc9e71b0a9ff2543bef0615e5 1313 ac19f29f5863bbbcd9537c0ecc897651;d362039a1c45ec44da0ade7df0c605ac SAMEA2239095 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461245/ERR461245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461245/ERR461245_2.fastq.gz 4304764 WGS 992020-sc-2013-11-05T12:07:50Z-1750465 RANDOM 138718727;144328835 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461245/ERR461245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461245/ERR461245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461245/11860_7#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461245/11860_7#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461245/ERR461245_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461245/ERR461245_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461245/11860_7#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461245/11860_7#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 231621845;7016 ERS367907 ERX427586 GENOMIC 9014966 430476400 2014-03-18 SC_RUN_11860_7#56 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461245/11860_7#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461245/11860_7#56.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#56 ERR124257 SC_EXP_7553_4#41 206 255702d1dc2cece38fca4baa31c420a8 1313 62abbc5a658100fabbf2b90ebbb738f9;64fa38c7e8d17d213c746d8478344640 SAMEA1463190 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124257/ERR124257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124257/ERR124257_2.fastq.gz 4381995 WGS NP7053-sc-2011-11-08T10:09:12Z-1298516 RANDOM 465400481;466811144 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124257/ERR124257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124257/ERR124257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124257/7553_4#41.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124257/ERR124257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124257/ERR124257_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124257/7553_4#41.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 905453143 ERS070148 ERX100439 GENOMIC 4382965 876399000 2012-05-09 SC_RUN_7553_4#41 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124257/7553_4#41.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR461148 SC_EXP_11860_6#52 233 c75037b94938b3ddab139761517fa134;a26af90c31cb2cc0ea8f826216ac7c31 1313 0d18d8c8be83926333407ace791f18e2;00b9fe9b7452136e6deddd613d3b6107 SAMEA2238517 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461148/ERR461148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461148/ERR461148_2.fastq.gz 3785518 WGS 2080611-sc-2013-11-05T11:57:44Z-1749877 RANDOM 121530583;128647132 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461148/ERR461148_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461148/ERR461148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461148/11860_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461148/11860_6#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461148/ERR461148_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461148/ERR461148_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461148/11860_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461148/11860_6#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 205108458;6253 ERS367329 ERX427489 GENOMIC 9015561 378551800 2014-03-18 SC_RUN_11860_6#52 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461148/11860_6#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461148/11860_6#52.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_6#52 ERR129185 SC_EXP_7622_5#65 225 cad901a5f4ea5de8454fdd1c3e687893 1313 45d1ae04cd38f240a646052c8a449620;46ed2bad4ad9ca3c830a3435a01a75b5 SAMEA1463135 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129185/ERR129185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129185/ERR129185_2.fastq.gz 1781023 WGS MD5107-sc-2011-11-08T10:08:18Z-1298444 RANDOM 191381523;198147915 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129185/ERR129185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129185/ERR129185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129185/7622_5#65.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129185/ERR129185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129185/ERR129185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129185/7622_5#65.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 385695753 ERS070076 ERX105326 GENOMIC 4336594 356204600 2012-05-28 SC_RUN_7622_5#65 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129185/7622_5#65.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR069789 SC_EXP_6999_5#15 246 c5e0570038f3c690fcd7846e5f6e1381 1313 9921e57a49701cb6652f7dd184ca72e9;3eb86eaf8efe07960bec4fc21b0eb520 SAMEA1032562 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069789/ERR069789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069789/ERR069789_2.fastq.gz 3995796 WGS 187406-sc-2011-08-01T09:45:39Z-1250160 RANDOM 232944839;232349995 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069789/ERR069789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069789/ERR069789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069789/6999_5#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069789/ERR069789_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069789/ERR069789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069789/6999_5#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 596737107 ERS044095 ERX047642 GENOMIC 3737012 599369400 2012-01-19 SC_RUN_6999_5#15 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069789/6999_5#15.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR067972 SC_EXP_6952_7#13 226 4d487bae01b342de8634b2a3f6b27be1 1313 1a036c65c266c220c98fdc3ededcf79d;d94e12d3f485cca2aee48a36069d4e2f SAMEA1032688 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067972/ERR067972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067972/ERR067972_2.fastq.gz 4749217 WGS 3173_99p-sc-2011-08-01T09:44:17Z-1250043 RANDOM 276984217;271717416 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067972/ERR067972_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067972/ERR067972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067972/6952_7#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067972/ERR067972_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067972/ERR067972_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067972/6952_7#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 705005152 ERS043978 ERX045835 GENOMIC 3758234 712382550 2012-01-16 SC_RUN_6952_7#13 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067972/6952_7#13.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR068021 SC_EXP_7001_2#16 224 d10391dfd770f7f73a915c2cf99b53d6 1313 96f65aabfb1b251956aca51516ddaa29;6e68ac3cd3186f2d36a6a2d96f127fb8 SAMEA1032575 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068021/ERR068021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068021/ERR068021_2.fastq.gz 4655291 WGS 3121-sc-2011-08-01T09:43:45Z-1250000 RANDOM 265424665;272801842 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068021/ERR068021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068021/ERR068021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068021/7001_2#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068021/ERR068021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068021/ERR068021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068021/7001_2#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 688981494 ERS043935 ERX045884 GENOMIC 3758184 698293650 2012-01-16 SC_RUN_7001_2#16 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068021/7001_2#16.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR047136 SC_EXP_6569_8#12 247 8c7aa8d3f05a5cadc7f70d319a71295d 1313 770c3f5d35905418929c46640626c72a;17e512c522cff63575d4d763f2523710 SAMEA1026633 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047136/ERR047136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047136/ERR047136_2.fastq.gz 1241657 WGS UoS5079-sc-2011-03-11-1098949 RANDOM 77048532;81792089 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047136/ERR047136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047136/ERR047136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047136/6569_8#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047136/ERR047136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047136/ERR047136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047136/6569_8#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 206894239 ERS025139 ERX024198 GENOMIC 2744168 186248550 2011-09-27 SC_RUN_6569_8#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047136/6569_8#12.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_8#12 ERR047120 SC_EXP_6569_7#17 252 3ce71f4b65340238f147cf4c9d8baca1 1313 81a137082a10ce340a212af2bf6ad0fd;097c782c707dbcf0ffb3175ede42c641 SAMEA1026629 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047120/ERR047120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047120/ERR047120_2.fastq.gz 6050141 WGS UoS5226-sc-2011-03-11-1098998 RANDOM 335953984;330301566 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047120/ERR047120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047120/ERR047120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047120/6569_7#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047120/ERR047120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047120/ERR047120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047120/6569_7#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 837259064 ERS025188 ERX024182 GENOMIC 2744144 907521150 2011-09-27 SC_RUN_6569_7#17 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047120/6569_7#17.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_7#17 ERR047109 SC_EXP_6569_7#6 252 366e41bf3672ea5f6e040c01b0b03967 1313 1449a72a912188bf2213b12c4f55a9b7;07801e48fa7dc87a5585b2d6e603d144 SAMEA1026686 2011-09-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047109/ERR047109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047109/ERR047109_2.fastq.gz 6343192 WGS UoS5191-sc-2011-03-11-1098987 RANDOM 352556724;347884022 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047109/ERR047109_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047109/ERR047109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047109/6569_7#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047109/ERR047109_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047109/ERR047109_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047109/6569_7#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 888743994 ERS025177 ERX024171 GENOMIC 2744133 951478800 2011-09-27 SC_RUN_6569_7#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047109/6569_7#6.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA052552 6569_7#6 ERR046191 SC_EXP_6512_7#4 241 b94a534b11dab9a97dac214c3f57b113 1313 90f719bcb48beab53546d61e6e3c25bb;87328ae482b09acf8ef30e566514ac80 SAMEA1026691 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046191/ERR046191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046191/ERR046191_2.fastq.gz 11051312 WGS UoS4184-sc-2011-02-14-1078420 RANDOM 583002047;581814714 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046191/ERR046191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046191/ERR046191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046191/6512_7#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046191/ERR046191_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046191/ERR046191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046191/6512_7#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1440771238 ERS023366 ERX023253 GENOMIC 2735146 1657696800 2011-09-20 SC_RUN_6512_7#4 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046191/6512_7#4.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_7#4 ERR046108 SC_EXP_6512_3#13 204 60ae759f3ec8f2d4d2c68c1f7eb0891f 1313 b7828337fe45b7367e074a244bfb81ab;429541969cc7dc79e756ace2e6ab002a SAMEA1026822 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046108/ERR046108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046108/ERR046108_2.fastq.gz 12071600 WGS UoS3233-sc-2011-02-14-1078337 RANDOM 723014348;725679991 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046108/ERR046108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046108/ERR046108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046108/6512_3#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046108/ERR046108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046108/ERR046108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046108/6512_3#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1818818441 ERS023283 ERX023170 GENOMIC 2734312 1810740000 2011-09-20 SC_RUN_6512_3#13 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046108/6512_3#13.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#13 ERR045433 SC_EXP_6486_8#18 229 7922e94aa6594d6554fd8398337fb60a 1313 a328b775a648b2392765bd661da41598;0d9e25156dc02a0928d26f3d0bd4a41e SAMEA1026507 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045433/ERR045433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045433/ERR045433_2.fastq.gz 8055581 WGS UoS5165-sc-2011-03-11-1098977 RANDOM 421135368;425650760 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045433/ERR045433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045433/ERR045433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045433/6486_8#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045433/ERR045433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045433/ERR045433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045433/6486_8#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1058576327 ERS025167 ERX022495 GENOMIC 2745037 1208337150 2011-09-14 SC_RUN_6486_8#18 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045433/6486_8#18.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_8#18 ERR045429 SC_EXP_6486_8#14 229 737145b423f04a92d493837adfbc1986 1313 dc70cce5f82eefdc90644f16b0f13b70;7e72c52a860ad2d56efb56af0edfdd07 SAMEA1026562 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045429/ERR045429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045429/ERR045429_2.fastq.gz 6946926 WGS UoS5156-sc-2011-03-11-1098973 RANDOM 371028906;376653742 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045429/ERR045429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045429/ERR045429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045429/6486_8#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045429/ERR045429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045429/ERR045429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045429/6486_8#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 923380318 ERS025163 ERX022491 GENOMIC 2745033 1042038900 2011-09-14 SC_RUN_6486_8#14 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045429/6486_8#14.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_8#14 ERR045362 SC_EXP_6486_5#13 228 9dd910b79cb61a6c7e6858f638703933 1313 e67e2da5ef08de64fbac2f1bf49a31f1;9c30bb203ae16273201733aa67184841 SAMEA1026539 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045362/ERR045362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045362/ERR045362_2.fastq.gz 8778502 WGS UoS4314-sc-2011-02-14-1078451 RANDOM 464831523;472843022 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045362/ERR045362_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045362/ERR045362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045362/6486_5#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045362/ERR045362_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045362/ERR045362_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045362/6486_5#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1196890116 ERS023397 ERX022424 GENOMIC 2744966 1316775300 2011-09-14 SC_RUN_6486_5#13 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045362/6486_5#13.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_5#13 ERR044966 SC_EXP_6472_5#13 250 6166ab42705a866d40da9971dc5575d9 1313 f2568d70358bd2d6a4e2072ccb52bc0f;655680a54b9e432213b34cdfe5e4b453 SAMEA1026577 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044966/ERR044966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044966/ERR044966_2.fastq.gz 8094528 WGS UoS2011-sc-2011-02-14-1078169 RANDOM 402231675;411408136 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044966/ERR044966_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044966/ERR044966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044966/6472_5#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044966/ERR044966_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044966/ERR044966_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044966/6472_5#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1023270472 ERS023115 ERX022074 GENOMIC 2732337 1214179200 2011-09-06 SC_RUN_6472_5#13 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044966/6472_5#13.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_5#13 ERR2090695 SC_EXP_22841_1#154 429 7c9f6fe5b60f3794be4bb3715c04eedb;6997bb4a73e1c537ca6ac6122adbc636 1313 ef62674fa724db267cb386a9a01df85c;f7866d52b7215ed3989e7323e9b7a79d SAMEA104035540 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090695/ERR2090695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090695/ERR2090695_2.fastq.gz 2987486 WGS a8f4cbf0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 55937880;60403152 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090695/ERR2090695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/005/ERR2090695/ERR2090695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090695/22841_1#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090695/22841_1#154.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090695/ERR2090695_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/005/ERR2090695/ERR2090695_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090695/22841_1#154.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090695/22841_1#154.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80858670;4928 ERS1699433 ERX2147489 GENOMIC DN477156T:C8 373435750 2017-08-08 SC_RUN_22841_1#154 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090695/22841_1#154.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090695/22841_1#154.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#154 ERR2090654 SC_EXP_22841_1#113 433 dd3b04dcdc59e29f185df2381d234c6c;87ed8523a91a4b73d565cf46f8aaf29d 1313 94394931949a58aaeabf574e2a84653b;c95e599984e3082abacf807a7363b0b1 SAMEA104035499 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090654/ERR2090654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090654/ERR2090654_2.fastq.gz 2670340 WGS a728e590-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49225155;53823397 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090654/ERR2090654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090654/ERR2090654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090654/22841_1#113.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090654/22841_1#113.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090654/ERR2090654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090654/ERR2090654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090654/22841_1#113.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090654/22841_1#113.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71550265;4459 ERS1699392 ERX2147448 GENOMIC DN477156T:B3 333792500 2017-08-08 SC_RUN_22841_1#113 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090654/22841_1#113.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090654/22841_1#113.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#113 ERR2090521 SC_EXP_22667_8#59 437 7cc1851a7907230c41d7575bb97aa758;468c16385e07cb7e62344499ac537b8a 1313 e388f792485e1e54e6b7c957cd641d79;ba0f0210570d69c4f28ba339b175df09 SAMEA104038606 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090521/ERR2090521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090521/ERR2090521_2.fastq.gz 3250428 WGS d4074160-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 59291664;63282538 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090521/ERR2090521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090521/ERR2090521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090521/22667_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090521/22667_8#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090521/ERR2090521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090521/ERR2090521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090521/22667_8#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090521/22667_8#59.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85144332;5364 ERS1702499 ERX2147315 GENOMIC DN486339C:C8 406303500 2017-08-08 SC_RUN_22667_8#59 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090521/22667_8#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090521/22667_8#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_8#59 ERR2090656 SC_EXP_22841_1#115 449 9fefd88f169757e144d8c6abc27b8981;1196fc9b22af0ca0f889b78ca58cd94b 1313 d286ac924a7d609450353c87fa11582a;41a6fab0b3e317ed2ddf44c85f15fe21 SAMEA104035501 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090656/ERR2090656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090656/ERR2090656_2.fastq.gz 2642356 WGS a73ce2c0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 48876428;54106947 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090656/ERR2090656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090656/ERR2090656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090656/22841_1#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090656/22841_1#115.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090656/ERR2090656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090656/ERR2090656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090656/22841_1#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090656/22841_1#115.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71609194;4394 ERS1699394 ERX2147450 GENOMIC DN477156T:D3 330294500 2017-08-08 SC_RUN_22841_1#115 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090656/22841_1#115.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090656/22841_1#115.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#115 ERR2090396 SC_EXP_22667_7#124 441 8ed14cf26c8eecbe46b727901b44c77f;9d884d2844497118c8132549fdde3bc6 1313 f86fa17fc2714b3b59124fa555197784;df738bf3c7b089f0a61019d1ac779126 SAMEA104035120 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090396/ERR2090396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090396/ERR2090396_2.fastq.gz 3216312 WGS 86c6cbf0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60833090;65621085 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090396/ERR2090396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090396/ERR2090396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090396/22667_7#124.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090396/22667_7#124.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090396/ERR2090396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090396/ERR2090396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090396/22667_7#124.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090396/22667_7#124.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88198507;5307 ERS1699013 ERX2147190 GENOMIC DN486303N:D4 402039000 2017-08-08 SC_RUN_22667_7#124 111 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090396/22667_7#124.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090396/22667_7#124.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#124 ERR2089801 SC_EXP_22114_6#13 466 167bc7aba726f9bd33145f0b09642e99;40810074461fc2e555d6d754a02b872c 1313 378af9f08a44852b1ee15ac82c94bcd7;54dc4aaf08a7d03b2936686940f808b3 SAMEA104154988 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089801/ERR2089801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089801/ERR2089801_2.fastq.gz 2344348 WGS 877fe0b0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 51406461;52525263 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089801/ERR2089801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089801/ERR2089801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089801/22114_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089801/22114_6#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089801/ERR2089801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089801/ERR2089801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089801/22114_6#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089801/22114_6#13.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73279856;3873 ERS1814006 ERX2146595 GENOMIC DN478829S:E2 293043500 2017-08-08 SC_RUN_22114_6#13 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089801/22114_6#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089801/22114_6#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#13 ERR2089869 SC_EXP_22114_6#81 452 e74497f6b7ea31697ff025d0762766a4;2d8c9eef9fb93d6f4e5887e07a015187 1313 5f0c9f6162b7532d2a6df28b08d0b723;c9743b5ac40450edaef56edda16e91c5 SAMEA104155059 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089869/ERR2089869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089869/ERR2089869_2.fastq.gz 2157374 WGS 907fa650-c37a-11e6-b158-3c4a9275d6c8 RANDOM 48052775;46519264 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089869/ERR2089869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089869/ERR2089869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089869/22114_6#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089869/22114_6#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089869/ERR2089869_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089869/ERR2089869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089869/22114_6#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089869/22114_6#81.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66061593;3591 ERS1814077 ERX2146663 GENOMIC DN478829S:A11 269671750 2017-08-08 SC_RUN_22114_6#81 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089869/22114_6#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089869/22114_6#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#81 ERR2089735 SC_EXP_22027_1#115 456 35904b6183e59fbd2ac43e7770997a72;e35b8e0ac780c28a09d517c432ec04e4 1313 29f26b7cc3f3547349afa67bb8dbee37;7555fad5c20452c3603b87026b0495f8 SAMEA104155090 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089735/ERR2089735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089735/ERR2089735_2.fastq.gz 2391030 WGS 91f7ee70-c37a-11e6-b158-3c4a9275d6c8 RANDOM 43641865;47290314 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089735/ERR2089735_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/005/ERR2089735/ERR2089735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089735/22027_1#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089735/22027_1#115.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089735/ERR2089735_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/005/ERR2089735/ERR2089735_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089735/22027_1#115.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089735/22027_1#115.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63813548;4016 ERS1814108 ERX2146529 GENOMIC DN477278F:C4 298878750 2017-08-08 SC_RUN_22027_1#115 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089735/22027_1#115.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089735/22027_1#115.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#115 ERR2089756 SC_EXP_22027_1#136 429 a7780e997a7589a8b82232caef45ac68;8d8cb10c8c20e1e27aba53e860661071 1313 80cc584a1c7c81124cfd241fa06c5b80;261455e3f059693cfb5df1e6e57b7a80 SAMEA104155111 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089756/ERR2089756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089756/ERR2089756_2.fastq.gz 2969582 WGS 99683a70-c37a-11e6-b158-3c4a9275d6c8 RANDOM 53047577;56366784 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089756/ERR2089756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089756/ERR2089756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089756/22027_1#136.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089756/22027_1#136.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089756/ERR2089756_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089756/ERR2089756_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089756/22027_1#136.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089756/22027_1#136.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76638721;4914 ERS1814129 ERX2146550 GENOMIC DN477278F:H6 371197750 2017-08-08 SC_RUN_22027_1#136 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089756/22027_1#136.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089756/22027_1#136.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#136 ERR2089483 SC_EXP_21999_8#38 457 e6806ae45a8088bf9b47ad0368f38d8c;eee1175cd4cf52634a5a53ee7ab6c41d 1313 50505b80638ac8b5fcd23878b7d9bcdd;84a22e2fa1f3e39b43638f2b491bf7d1 SAMEA104154748 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089483/ERR2089483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089483/ERR2089483_2.fastq.gz 2475072 WGS 7095c9f0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 45328095;47769639 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089483/ERR2089483_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089483/ERR2089483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089483/21999_8#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089483/21999_8#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089483/ERR2089483_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089483/ERR2089483_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089483/21999_8#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089483/21999_8#38.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64292640;4145 ERS1813766 ERX2146277 GENOMIC DN476959T:F5 309384000 2017-08-08 SC_RUN_21999_8#38 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089483/21999_8#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089483/21999_8#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#38 ERR2089702 SC_EXP_22027_1#82 462 cfd4b0d120df199c9ad1d7eac5404e4f;a43280cea368836fbc454c140c3a0078 1313 069cabf64a8844cc87f3cda75aadd177;d0c107a47b97a44132811e4e1b4f4676 SAMEA104154968 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089702/ERR2089702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089702/ERR2089702_2.fastq.gz 3078146 WGS 86ba94e0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 56713907;58879767 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089702/ERR2089702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089702/ERR2089702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089702/22027_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089702/22027_1#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089702/ERR2089702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089702/ERR2089702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089702/22027_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089702/22027_1#82.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80626244;5102 ERS1813986 ERX2146496 GENOMIC DN477277E:B11 384768250 2017-08-08 SC_RUN_22027_1#82 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089702/22027_1#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089702/22027_1#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#82 ERR2089711 SC_EXP_22027_1#91 456 1e5715557853bea6317d35aba67177b1;30dac7efe97376cfa6decd2b2c38c6eb 1313 d14a2d9313b40bbbbca53edad91f9e3b;34619ec3deb5df5c2362fa4dfef65eba SAMEA104155066 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089711/ERR2089711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089711/ERR2089711_2.fastq.gz 3303240 WGS 90e93d90-c37a-11e6-b158-3c4a9275d6c8 RANDOM 60931656;65179158 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089711/ERR2089711_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089711/ERR2089711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089711/22027_1#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089711/22027_1#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089711/ERR2089711_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089711/ERR2089711_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089711/22027_1#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089711/22027_1#91.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88920042;5408 ERS1814084 ERX2146505 GENOMIC DN477278F:C1 412905000 2017-08-08 SC_RUN_22027_1#91 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089711/22027_1#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089711/22027_1#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#91 ERR2089640 SC_EXP_22027_1#20 460 33107d64ac6af8476db0b7ea5e4dc299;167b5658d5a8458b441bc0c3ef13d842 1313 59f1f66c4dbeeab50b1aa403218f2c80;7c431aa0eb07ece5a5b0686a3ea15619 SAMEA104154907 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089640/ERR2089640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089640/ERR2089640_2.fastq.gz 2629556 WGS 83c8a510-c37a-11e6-b158-3c4a9275d6c8 RANDOM 47404677;49907374 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089640/ERR2089640_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089640/ERR2089640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089640/22027_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089640/22027_1#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089640/ERR2089640_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089640/ERR2089640_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089640/22027_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089640/22027_1#20.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67504764;4368 ERS1813925 ERX2146434 GENOMIC DN477277E:D3 328694500 2017-08-08 SC_RUN_22027_1#20 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089640/22027_1#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089640/22027_1#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#20 ERR2089648 SC_EXP_22027_1#28 464 2ac0ec22965e879f221a332645405e70;54f68cebdc3425a572cd07a2c4fa55ea 1313 6484c5c2ddeb6a9f7da5c860e2cf0c4d;1c8869653c726e18e99acb5ba89b7cea SAMEA104154914 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089648/ERR2089648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089648/ERR2089648_2.fastq.gz 2838602 WGS 8446d5c0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 51862483;54224904 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089648/ERR2089648_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089648/ERR2089648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089648/22027_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089648/22027_1#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089648/ERR2089648_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089648/ERR2089648_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089648/22027_1#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089648/22027_1#28.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73478141;4707 ERS1813932 ERX2146442 GENOMIC DN477277E:D4 354825250 2017-08-08 SC_RUN_22027_1#28 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089648/22027_1#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089648/22027_1#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#28 ERR1947843 SC_EXP_21946_6#323 465 015f3f33206237048b68109de50ec518;a80a279da2c1746b979be979166b52cf 1313 82dc4a65dc17250f7d7dba774ff115f1;efcab31988fa3c11890808723575a79c SAMEA4561139 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947843/ERR1947843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947843/ERR1947843_2.fastq.gz 2140510 WGS 0c0b3bd0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 54088907;76374635 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947843/ERR1947843_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947843/ERR1947843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947843/21946_6#323.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947843/21946_6#323.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947843/ERR1947843_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947843/ERR1947843_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947843/21946_6#323.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947843/21946_6#323.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 94021060;3677 ERS1460318 ERX2013630 GENOMIC 18471551 323217010 2017-04-25 SC_RUN_21946_6#323 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947843/21946_6#323.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947843/21946_6#323.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947732 SC_EXP_21946_6#212 468 4bdf71ed74d137ea59135c643bcc0292;0b24fc7594ea4121cbcbec0582db5e43 1313 9dc3a38a032312c152181c529a08c69b;64aa017883cc2424604e244a9dca1f0f SAMEA4561027 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947732/ERR1947732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947732/ERR1947732_2.fastq.gz 2236598 WGS 02c9b240-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 56157356;80646087 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947732/ERR1947732_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947732/ERR1947732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947732/21946_6#212.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947732/21946_6#212.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947732/ERR1947732_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947732/ERR1947732_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947732/21946_6#212.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947732/21946_6#212.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 99502090;3812 ERS1460206 ERX2013519 GENOMIC 18471414 337726298 2017-04-25 SC_RUN_21946_6#212 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947732/21946_6#212.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947732/21946_6#212.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947852 SC_EXP_21946_6#332 443 5400495b4bfbdb4fd109deaa6d2518e9;344f60c9b4a6918b0297ab4cd02b0fa0 1313 b472a780a9f717baebb1636a3f100b17;b1b2d1d4c5cc9d04220041f35ff087c6 SAMEA4561148 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947852/ERR1947852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947852/ERR1947852_2.fastq.gz 2479326 WGS 0c5b57a0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 62100491;86108997 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947852/ERR1947852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947852/ERR1947852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947852/21946_6#332.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947852/21946_6#332.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947852/ERR1947852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947852/ERR1947852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947852/21946_6#332.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947852/21946_6#332.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106787748;4194 ERS1460327 ERX2013639 GENOMIC 18471564 374378226 2017-04-25 SC_RUN_21946_6#332 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947852/21946_6#332.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947852/21946_6#332.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947571 SC_EXP_21946_6#51 457 97ed7e78367f44bc7fba7b5a9a34aa05;cc3b8c3d574b11c0d84cd9c788028dc1 1313 c828cae6b5a10809b74fcbbbdcc51fb4;15f62fd5c7bd8879d08ca8a5c16fb531 SAMEA4561600 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947571/ERR1947571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947571/ERR1947571_2.fastq.gz 2024476 WGS 3735f430-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 50965140;71781009 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947571/ERR1947571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947571/ERR1947571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947571/21946_6#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947571/21946_6#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947571/ERR1947571_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947571/ERR1947571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947571/21946_6#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947571/21946_6#51.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 88676150;3496 ERS1460779 ERX2013358 GENOMIC 18471648 305695876 2017-04-25 SC_RUN_21946_6#51 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947571/21946_6#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947571/21946_6#51.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947690 SC_EXP_21946_6#170 453 22a57e388daf72572a2238527bc0cdb7;4f0de2d5a9f36e371a4407428fcf4558 1313 6d66a42934ef8173e2d0732784d721c6;b3f6dd0ff6a532c014ff15627d938595 SAMEA17725918 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947690/ERR1947690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947690/ERR1947690_2.fastq.gz 2066042 WGS 40fa9070-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 51524915;73562605 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947690/ERR1947690_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947690/ERR1947690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947690/21946_6#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947690/21946_6#170.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947690/ERR1947690_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947690/ERR1947690_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947690/21946_6#170.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947690/21946_6#170.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 90237901;3538 ERS1461749 ERX2013477 GENOMIC 18471493 311972342 2017-04-25 SC_RUN_21946_6#170 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947690/21946_6#170.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947690/21946_6#170.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947539 SC_EXP_21946_6#19 451 6569cab1c3b92c6536dbd25c72a711d8;f20efcc8a9b8a0785cd2726186f9dbba 1313 315165e8fa7b5a8fc0c08906c13053b5;7c312bad29c99d223f14276f1b60c8ec SAMEA4561568 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947539/ERR1947539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947539/ERR1947539_2.fastq.gz 2495494 WGS 362fced0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 62088792;87556286 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947539/ERR1947539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947539/ERR1947539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947539/21946_6#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947539/21946_6#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947539/ERR1947539_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947539/ERR1947539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947539/21946_6#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947539/21946_6#19.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 108709742;4243 ERS1460747 ERX2013326 GENOMIC 18471644 376819594 2017-04-25 SC_RUN_21946_6#19 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947539/21946_6#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947539/21946_6#19.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947321 SC_EXP_21903_8#167 438 3d197d1be1a04ada71f52861a4994efa;3da07b370f9e5ac398493c459dcb016c 1313 94a7ea70c8fd1a659430dfafa774b53a;82b3b55504c1f0551b4034d1de2d72ff SAMEA4561348 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947321/ERR1947321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947321/ERR1947321_2.fastq.gz 2090598 WGS 1e15c390-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 50602516;75485378 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947321/ERR1947321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947321/ERR1947321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947321/21903_8#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947321/21903_8#167.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947321/ERR1947321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947321/ERR1947321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947321/21903_8#167.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947321/21903_8#167.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 91933779;3602 ERS1460527 ERX2013108 GENOMIC 18430319 315680298 2017-04-25 SC_RUN_21903_8#167 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947321/21903_8#167.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947321/21903_8#167.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947314 SC_EXP_21903_8#160 429 48f740fd5d8bf918a7cd45c4f4931dec;2bab7ef9f78ec80728c13dd8386d5417 1313 094063f14604f0e5f0a5ace8bc50261c;dc2afd9e89bf6ef38aca7894f7aad2f0 SAMEA4561341 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947314/ERR1947314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947314/ERR1947314_2.fastq.gz 2351928 WGS 1dda1a20-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 56721825;84506091 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947314/ERR1947314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947314/ERR1947314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947314/21903_8#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947314/21903_8#160.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947314/ERR1947314_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947314/ERR1947314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947314/21903_8#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947314/21903_8#160.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103097494;3981 ERS1460520 ERX2013101 GENOMIC 18430330 355141128 2017-04-25 SC_RUN_21903_8#160 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947314/21903_8#160.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947314/21903_8#160.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947525 SC_EXP_21946_6#5 452 4c84ee0488affe2bcbb1911b58aa3949;90a60d39d5d49b9beb2fa6a38d99ca08 1313 9b7a422e9643fbce66774bc5712b1388;b4318bae80a3850fae12bab69949f50d SAMEA4561554 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947525/ERR1947525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947525/ERR1947525_2.fastq.gz 2501638 WGS 35c1f1d0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 61977890;88209629 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947525/ERR1947525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947525/ERR1947525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947525/21946_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947525/21946_6#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947525/ERR1947525_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947525/ERR1947525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947525/21946_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947525/21946_6#5.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 109513078;4239 ERS1460733 ERX2013312 GENOMIC 18471666 377747338 2017-04-25 SC_RUN_21946_6#5 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947525/21946_6#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947525/21946_6#5.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947291 SC_EXP_21903_8#137 446 281d822e7bd48f20f3b747b5be306dd3;4f0155bbd09988776132eb2a8406ef34 1313 80d044603f57a457d137c2941113bcac;c136baa7b49129744bae767168edf5e6 SAMEA4561318 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947291/ERR1947291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947291/ERR1947291_2.fastq.gz 2471552 WGS 1d0034e0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 60539970;90826769 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947291/ERR1947291_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947291/ERR1947291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947291/21903_8#137.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947291/21903_8#137.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947291/ERR1947291_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947291/ERR1947291_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947291/21903_8#137.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947291/21903_8#137.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 110781277;4156 ERS1460497 ERX2013078 GENOMIC 18430339 373204352 2017-04-25 SC_RUN_21903_8#137 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947291/21903_8#137.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947291/21903_8#137.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947279 SC_EXP_21903_8#125 436 920d1cd6a37ec2a3e61d5cbf4621fbf3;1056cfe2c7aab04e253c2073297eea0f 1313 b2176296d0406eb3a11856159a68d22e;de6ff353d341215ee6e827f9861b5ff2 SAMEA4561306 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947279/ERR1947279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947279/ERR1947279_2.fastq.gz 2713324 WGS 1c6ea340-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 65179705;97630549 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947279/ERR1947279_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947279/ERR1947279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947279/21903_8#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947279/21903_8#125.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947279/ERR1947279_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947279/ERR1947279_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947279/21903_8#125.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947279/21903_8#125.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 119256018;4599 ERS1460485 ERX2013066 GENOMIC 18430290 409711924 2017-04-25 SC_RUN_21903_8#125 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947279/21903_8#125.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947279/21903_8#125.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1756404 SC_EXP_20925_3#19 443 b34bfa59546b4c1510f3f4e126dbea05;8c4ef1b2a9b7c89120c707cadccf410e 1313 7ca1d6756a8298169954e75184dd2705;609f751dd997083968a3d7a599b22204 SAMEA4034869 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756404/ERR1756404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756404/ERR1756404_2.fastq.gz 3670358 WGS 3a7de9b0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 71128517;76706493 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756404/ERR1756404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756404/ERR1756404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756404/20925_3#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756404/20925_3#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/004/ERR1756404/ERR1756404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/004/ERR1756404/ERR1756404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756404/20925_3#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756404/20925_3#19.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 111443792;6138 ERS1205979 ERX1823424 GENOMIC DN461288B:C3 458794750 2016-12-13 SC_RUN_20925_3#19 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756404/20925_3#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756404/20925_3#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#19 ERR1756414 SC_EXP_20925_3#29 412 357c73f0ed209d20e1f0f800f858048e;a15995700a29960e080c94a627582b99 1313 f719dee7594826936e764340d7f4c41e;e9ab1b024aeae3059041d0ac5e5c41aa SAMEA4034874 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756414/ERR1756414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756414/ERR1756414_2.fastq.gz 4589840 WGS 3af081a0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 90881279;95323416 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756414/ERR1756414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/004/ERR1756414/ERR1756414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756414/20925_3#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756414/20925_3#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/004/ERR1756414/ERR1756414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/004/ERR1756414/ERR1756414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756414/20925_3#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756414/20925_3#29.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 143425040;7550 ERS1205984 ERX1823434 GENOMIC DN461288B:E4 573730000 2016-12-13 SC_RUN_20925_3#29 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756414/20925_3#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756414/20925_3#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#29 ERR1947274 SC_EXP_21903_8#120 430 9f10effdbdf3f45d3a36ba06eaac68ee;ff49b5f5c7b994d98f66bfe97d579b32 1313 08b4f8b2c05c70c1728cf7bd29e592b3;94e081b1b04dce03c018c8d98e584d92 SAMEA4561301 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947274/ERR1947274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947274/ERR1947274_2.fastq.gz 2571594 WGS 1c38ed40-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 61313455;91174790 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947274/ERR1947274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947274/ERR1947274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947274/21903_8#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947274/21903_8#120.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947274/ERR1947274_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947274/ERR1947274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947274/21903_8#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947274/21903_8#120.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 111734935;4353 ERS1460480 ERX2013061 GENOMIC 18430325 388310694 2017-04-25 SC_RUN_21903_8#120 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947274/21903_8#120.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947274/21903_8#120.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1453638 SC_EXP_19341_2#171 452 726c0ccbc5f3f09bf2427c7bc16bd1d7;29e7cc74aa0c904d28c56def36b538c5 1313 9357a9cd710a03f70b8539932a89afbf;f8ec4a324b7ecaa5869cf05658b28628 SAMEA3713906 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453638/ERR1453638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453638/ERR1453638_2.fastq.gz 2932436 WGS 389e9710-41bd-11e5-998e-3c4a9275d6c6 RANDOM 56177425;66188458 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453638/ERR1453638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453638/ERR1453638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453638/19341_2#171.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453638/19341_2#171.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453638/ERR1453638_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453638/ERR1453638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453638/19341_2#171.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453638/19341_2#171.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87582499;4940 ERS1021055 ERX1524116 GENOMIC 15972559 366554500 2016-06-14 SC_RUN_19341_2#171 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453638/19341_2#171.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453638/19341_2#171.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#171 ERR1422647 SC_EXP_19084_8#134 448 9f690e9155c3655234b778ea6e9e11f6;ed6f29951f1c6506e44966fe8787ee40 1313 9cc14135364662b6d7d867471ffea9a0;52b82466b73ed7ff404afb99bd61b3d6 SAMEA3714471 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422647/ERR1422647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422647/ERR1422647_2.fastq.gz 2527874 WGS 551ebb90-41bd-11e5-998e-3c4a9275d6c6 RANDOM 57957099;59211275 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422647/ERR1422647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422647/ERR1422647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422647/19084_8#134.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422647/19084_8#134.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422647/ERR1422647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422647/ERR1422647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422647/19084_8#134.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422647/19084_8#134.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84161408;4248 ERS1021620 ERX1493229 GENOMIC 15758523 315984250 2016-05-24 SC_RUN_19084_8#134 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422647/19084_8#134.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422647/19084_8#134.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#134 ERR1422344 SC_EXP_19084_7#15 438 c60005c66018cfa0e9832b5be08eb8d6;e1271f7a46226ba14d1a8e6570e93e33 1313 61783d20746d561f93d619930ebdcead;d1ae25f4b44a86d5aaf67bc802a12d0e SAMEA3714168 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422344/ERR1422344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422344/ERR1422344_2.fastq.gz 2053828 WGS 44313c90-41bd-11e5-998e-3c4a9275d6c6 RANDOM 44227787;43795113 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422344/ERR1422344_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/004/ERR1422344/ERR1422344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422344/19084_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422344/19084_7#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/004/ERR1422344/ERR1422344_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/004/ERR1422344/ERR1422344_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422344/19084_7#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422344/19084_7#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63098738;3525 ERS1021317 ERX1492926 GENOMIC 15738045 256728500 2016-05-24 SC_RUN_19084_7#15 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422344/19084_7#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422344/19084_7#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#15 ERR1422343 SC_EXP_19084_7#14 418 a5bd1162b45d9473c7a26bb3378c7c09;d7fe831add96d60f546e8a7c3dcb35e8 1313 45bc10496e133d6facb454b578a0be29;1b99ea9c88f5b15bab97c9f8e3c5312e SAMEA3714167 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422343/ERR1422343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422343/ERR1422343_2.fastq.gz 2142738 WGS 44283be0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 45529485;44512628 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422343/ERR1422343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422343/ERR1422343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422343/19084_7#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422343/19084_7#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422343/ERR1422343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422343/ERR1422343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422343/19084_7#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422343/19084_7#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64278613;3651 ERS1021316 ERX1492925 GENOMIC 15738033 267842250 2016-05-24 SC_RUN_19084_7#14 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422343/19084_7#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422343/19084_7#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#14 ERR1422566 SC_EXP_19084_8#53 446 92a10bd841d2d76a978c2184fe1a1b8f;31d2559e7fe13469f97021930d112488 1313 6b1e351b6d1feae87d2237a198ef5d62;00b86c00bca1cf7988dc0cde7d915eaf SAMEA3714390 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422566/ERR1422566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422566/ERR1422566_2.fastq.gz 2490278 WGS 4e893f30-41bd-11e5-998e-3c4a9275d6c6 RANDOM 55641627;56705941 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422566/ERR1422566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422566/ERR1422566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422566/19084_8#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422566/19084_8#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422566/ERR1422566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422566/ERR1422566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422566/19084_8#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422566/19084_8#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80533535;4209 ERS1021539 ERX1493148 GENOMIC 15758431 311284750 2016-05-24 SC_RUN_19084_8#53 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422566/19084_8#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422566/19084_8#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#53 ERR1202586 SC_EXP_17966_5#136 464 356910a13daa5f88e3faa55ee0d25925;c1ce844b542f404dbb1e12cf8819b172 1313 185f6a88261be4998f6a19cf8821618e;dea60f8ca93fe44295ac3ca478adef1d SAMEA3430882 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202586/ERR1202586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202586/ERR1202586_2.fastq.gz 2235624 WGS GPS_US_2010202228_R1-sc-2296403 RANDOM 37367699;40044771 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202586/ERR1202586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202586/ERR1202586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202586/17966_5#136.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202586/17966_5#136.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202586/ERR1202586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202586/ERR1202586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202586/17966_5#136.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202586/17966_5#136.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 53936044;3778 ERS740167 ERX1274828 GENOMIC 15024684 279453000 2016-01-12 SC_RUN_17966_5#136 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202586/17966_5#136.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202586/17966_5#136.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#136 ERR1202386 SC_EXP_17870_8#126 447 fd3958b4c53c0b1057371c33120055f3;7fc0fd626ac1763ce257eecb85844fe7 1313 c138e400ffede0509a4266177a5dd3b4;0a3274b80c1db63570647ebe1a321cb8 SAMEA3389884 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202386/ERR1202386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202386/ERR1202386_2.fastq.gz 2651112 WGS GPS_MW_BHA2WF_R1-sc-2296128 RANDOM 48404143;51765027 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202386/ERR1202386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202386/ERR1202386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202386/17870_8#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202386/17870_8#126.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202386/ERR1202386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202386/ERR1202386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202386/17870_8#126.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202386/17870_8#126.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75070871;4419 ERS725987 ERX1274628 GENOMIC 14977650 331389000 2016-01-12 SC_RUN_17870_8#126 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202386/17870_8#126.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202386/17870_8#126.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#126 ERR1066287 SC_EXP_17175_8#3 467 01d669d5b31a39833682342dca612375;52602912ed161c5dc002286028b132e8 1313 9f2e6f0c178280d2d551b309564d4791;4405aa58ddc8c1a964cbbe58688ce080 SAMEA3354090 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066287/ERR1066287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066287/ERR1066287_2.fastq.gz 5529956 WGS GPS_ZA_2885-sc-2278696 RANDOM 102156758;103775749 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066287/ERR1066287_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066287/ERR1066287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066287/17175_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066287/17175_8#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066287/ERR1066287_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066287/ERR1066287_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066287/17175_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066287/17175_8#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 158735970;9123 ERS708445 ERX1146437 GENOMIC 14455710 691244500 2015-10-13 SC_RUN_17175_8#3 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066287/17175_8#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066287/17175_8#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#3 ERR1065501 SC_EXP_17138_4#18 472 9f99ead9afb7c054848509497ecca098;ba9463aa749942c3400aa900f6d5f91b 1313 31578e53378603fac0425c23ef2d8f4b;813711385d704009e0d4347b0f3ae63c SAMEA3354300 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065501/ERR1065501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065501/ERR1065501_2.fastq.gz 5215984 WGS GPS_ZA_3069-sc-2278909 RANDOM 100451618;102162242 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065501/ERR1065501_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065501/ERR1065501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065501/17138_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065501/17138_4#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065501/ERR1065501_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065501/ERR1065501_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065501/17138_4#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065501/17138_4#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 153883075;8655 ERS708655 ERX1145651 GENOMIC 14468567 651998000 2015-10-13 SC_RUN_17138_4#18 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065501/17138_4#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065501/17138_4#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#18 ERR1191907 SC_EXP_17794_7#85 458 32e9ee75b5d200316b5aff3902492a1d;650de17df627fb3171ac4f1ebc1dab7c 1313 62289ea48da05693b0b6992d318952fe;38c13489ed90b84ea1597a779c041af4 SAMEA3430884 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191907/ERR1191907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191907/ERR1191907_2.fastq.gz 1111410 WGS GPS_US_2010203157_R1-sc-2296405 RANDOM 22838629;23383504 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191907/ERR1191907_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191907/ERR1191907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191907/17794_7#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191907/17794_7#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191907/ERR1191907_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191907/ERR1191907_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191907/17794_7#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191907/17794_7#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 33363614;1913 ERS740169 ERX1265291 GENOMIC 14934789 138926250 2015-12-17 SC_RUN_17794_7#85 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191907/17794_7#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191907/17794_7#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#85 ERR980330 SC_EXP_16288_8#57 202 407f924d5c43a0f00727332860e49c1d;89c5132951c5a872aae89461a142843f 1313 7df085bfb7804adaf93085496f3619c3;ae6c99e4fbf60d4d13c53d9c0dc8f4ca SAMEA3232823 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980330/ERR980330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980330/ERR980330_2.fastq.gz 5175874 WGS GPS_NP_3511-sc-2205735 RANDOM 173487774;169090818 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980330/ERR980330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980330/ERR980330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980330/16288_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980330/16288_8#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980330/ERR980330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980330/ERR980330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980330/16288_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980330/16288_8#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276869283;8436 ERS654034 ERX1057202 GENOMIC 13301756 517587400 2015-08-12 SC_RUN_16288_8#57 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980330/16288_8#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980330/16288_8#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#57 ERR980286 SC_EXP_16288_8#13 202 40c17e284d60232713f46382225faca7;e2b7b50663a35afc23796d7f7dd5a8ea 1313 c1e9ccf08097573be3f243bbda1e51fe;e33fd4471e22646f44fe62bf04ed2c18 SAMEA3232779 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980286/ERR980286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980286/ERR980286_2.fastq.gz 4547050 WGS GPS_NP_1281-sc-2205691 RANDOM 153085805;149313311 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980286/ERR980286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980286/ERR980286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980286/16288_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980286/16288_8#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980286/ERR980286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980286/ERR980286_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980286/16288_8#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980286/16288_8#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244639594;7410 ERS653990 ERX1057158 GENOMIC 13301798 454705000 2015-08-12 SC_RUN_16288_8#13 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980286/16288_8#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980286/16288_8#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#13 ERR980232 SC_EXP_16288_7#37 201 1ea2b2854c36a8473b6a13209dadcae9;ba3f495acb091e1cdcd2025899a40585 1313 1c96fc07504ec89b7a3f6c00a2ba3a9c;76e996f50d8409a128f6980065f39658 SAMEA3232712 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980232/ERR980232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980232/ERR980232_2.fastq.gz 5534380 WGS GPS_NP_1041-sc-2205631 RANDOM 185559449;181115208 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980232/ERR980232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980232/ERR980232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980232/16288_7#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980232/16288_7#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980232/ERR980232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980232/ERR980232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980232/16288_7#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980232/16288_7#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295837125;8905 ERS653923 ERX1057104 GENOMIC 13304055 553438000 2015-08-12 SC_RUN_16288_7#37 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980232/16288_7#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980232/16288_7#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#37 ERR979949 SC_EXP_16288_3#76 234 5dfdaa5e127424d72a0d75ecacee13ff;388e3b2d6169b59f30b5a30d6d5915f6 1313 66cdbb88f58c22e03f06b8b06a845979;b4da7e4161ae9ddd0323377074fbc7a2 SAMEA3232419 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979949/ERR979949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979949/ERR979949_2.fastq.gz 4131010 WGS GPS_NP_2047-sc-2205337 RANDOM 138386944;136594431 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979949/ERR979949_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979949/ERR979949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979949/16288_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979949/16288_3#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979949/ERR979949_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979949/ERR979949_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979949/16288_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979949/16288_3#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222001130;6508 ERS653630 ERX1056821 GENOMIC 13296181 413101000 2015-08-12 SC_RUN_16288_3#76 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979949/16288_3#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979949/16288_3#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#76 ERR876495 SC_EXP_15608_2#65 215 ece3bafef12874d9bcd0e93f8ef56751;621df55bb7ca54f68243597a931ce5b6 1313 19a39154f85fa1e8ee8127504bafeecd;eda51f9e7ac048cc73c02ac9b34748fa SAMEA3175710 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876495/ERR876495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876495/ERR876495_2.fastq.gz 5000490 WGS GPS_US_1148_98_R1-sc-2190759 RANDOM 150542578;156334692 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876495/ERR876495_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876495/ERR876495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876495/15608_2#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876495/15608_2#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876495/ERR876495_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876495/ERR876495_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876495/15608_2#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876495/15608_2#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248261737;8077 ERS628658 ERX956058 GENOMIC 13024173 500049000 2015-05-12 SC_RUN_15608_2#65 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876495/15608_2#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876495/15608_2#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#65 ERR876488 SC_EXP_15608_2#58 215 7e90cdc481b0b6f6a61ab41668eb1e7f;b79a8ba3569190ee0bd664cb89341cde 1313 6d4b5b9e07cde83ec2262ba263b03b34;f38e46ef0f25ddb8410dd9c466dbbf88 SAMEA3175703 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876488/ERR876488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876488/ERR876488_2.fastq.gz 4690782 WGS GPS_US_1457_00_R1-sc-2190752 RANDOM 143536193;148468490 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876488/ERR876488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876488/ERR876488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876488/15608_2#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876488/15608_2#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876488/ERR876488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876488/ERR876488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876488/15608_2#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876488/15608_2#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 233985566;7528 ERS628651 ERX956051 GENOMIC 13024184 469078200 2015-05-12 SC_RUN_15608_2#58 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876488/15608_2#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876488/15608_2#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#58 ERR876467 SC_EXP_15608_2#37 215 12be8b8a751231d568f6d4e11355fc69;d120d2a6129e17fe3e3c3218957cd841 1313 3e5937d97f024139826973adad163f82;19a335ca7ebc77df73f8004caea55eea SAMEA3175682 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876467/ERR876467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876467/ERR876467_2.fastq.gz 4553964 WGS GPS_US_2204_00_R1-sc-2190731 RANDOM 139962028;146192630 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876467/ERR876467_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876467/ERR876467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876467/15608_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876467/15608_2#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876467/ERR876467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876467/ERR876467_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876467/15608_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876467/15608_2#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 229378366;7286 ERS628630 ERX956030 GENOMIC 13024217 455396400 2015-05-12 SC_RUN_15608_2#37 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876467/15608_2#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876467/15608_2#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#37 ERR862485 SC_EXP_15378_4#37 205 2a39be9e58254365d776559e1319dba7;52ae3f9096dae8cd9df97cb152f63f7c 1313 47182948becff3191a5caf8a8af18a3a;a48f7db2333d2e6abd1bd1d7ce15280e SAMEA3171173 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862485/ERR862485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862485/ERR862485_2.fastq.gz 3845138 WGS GPS_MW_BQN1FT-sc-2139736 RANDOM 129747403;133967920 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862485/ERR862485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862485/ERR862485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862485/15378_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862485/15378_4#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862485/ERR862485_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862485/ERR862485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862485/15378_4#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862485/15378_4#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 213379373;6197 ERS625564 ERX942135 GENOMIC 12826917 384513800 2015-04-21 SC_RUN_15378_4#37 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862485/15378_4#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862485/15378_4#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#37 ERR862480 SC_EXP_15378_4#32 205 36e0ff153c40aa7c42d0a7d294b08ebb;8c84c47b062e1a6b735cd8433baab326 1313 4cf08400617fa6022b9bf81bac8f791a;f035e58d50394b2567529f2a7f70e97b SAMEA3171167 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862480/ERR862480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862480/ERR862480_2.fastq.gz 4473690 WGS GPS_MW_BQN1D8-sc-2139730 RANDOM 150983288;155908167 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862480/ERR862480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862480/ERR862480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862480/15378_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862480/15378_4#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862480/ERR862480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862480/ERR862480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862480/15378_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862480/15378_4#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249062999;7081 ERS625558 ERX942130 GENOMIC 12826952 447369000 2015-04-21 SC_RUN_15378_4#32 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862480/15378_4#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862480/15378_4#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#32 ERR870242 SC_EXP_15531_6#50 212 6c7d4214b51a5dab4e5e33497a20ba03;45584ef9ed97b3b4c7b1ead01087e5c8 1313 8811588f3968191e12419e16f949fe99;d3cf3d24b8e0b9d0f5538fb4db04ed5d SAMEA3172993 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870242/ERR870242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870242/ERR870242_2.fastq.gz 4056810 WGS GPS_GM_1137-sc-2190552 RANDOM 154637820;145885281 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870242/ERR870242_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870242/ERR870242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870242/15531_6#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870242/15531_6#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870242/ERR870242_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870242/ERR870242_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870242/15531_6#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870242/15531_6#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248875446;6575 ERS627236 ERX949843 GENOMIC 12870034 405681000 2015-05-06 SC_RUN_15531_6#50 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870242/15531_6#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870242/15531_6#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#50 ERR742337 SC_EXP_14673_1#4 214 9d8f62234d41782f5a199d6f62dbf9da;c9eeecc141207937203d79462ef5516e 1313 e7e8e5f99c78cf0167c70eb90b65bfcf;534d7d767d23f9245f6c29089ba171e0 SAMEA2796412 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742337/ERR742337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742337/ERR742337_2.fastq.gz 6155902 WGS GPS_US_2013210866-sc-2138391 RANDOM 196807903;204557459 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742337/ERR742337_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742337/ERR742337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742337/14673_1#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742337/14673_1#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742337/ERR742337_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742337/ERR742337_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742337/14673_1#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742337/14673_1#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326644527;9892 ERS558023 ERX686020 GENOMIC 12061714 615590200 2015-01-27 SC_RUN_14673_1#4 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742337/14673_1#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742337/14673_1#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#4 ERR845742 SC_EXP_15277_1#9 250 048a7b762dba863dc15a7278b91cd110;09f6048428d9b0fdeebfb1ec56ceaaf1 1313 820e7cfcc26cc8b0db498ef84f102aff;36dd97b49704754774eb7a65c719048f SAMEA2796443 2015-04-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845742/ERR845742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845742/ERR845742_2.fastq.gz 5010988 WGS GPS_US_3673_03-sc-2138422 RANDOM 157202984;158654304 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845742/ERR845742_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR845/ERR845742/ERR845742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845742/15277_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845742/15277_1#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845742/ERR845742_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR845/ERR845742/ERR845742_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845742/15277_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR845/ERR845742/15277_1#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256740576;8086 ERS558054 ERX926653 GENOMIC 12591374 501098800 2015-04-08 SC_RUN_15277_1#9 fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845742/15277_1#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR845/ERR845742/15277_1#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA428759 15277_1#9 ERR773840 SC_EXP_14913_2#26 226 d6c2ebfa33f8a81a44d515d948487e9c;c63522e330d7c55eb665a89fea0624ce 1313 d325e9d38a6539cdba3fe06b72fa017e;c2c6ee7969cdef86fe077bb95352bc18 SAMEA2814030 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773840/ERR773840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773840/ERR773840_2.fastq.gz 4291290 WGS GPS_ZA_2258-sc-2022514 RANDOM 141863360;147493873 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773840/ERR773840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773840/ERR773840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773840/14913_2#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773840/14913_2#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773840/ERR773840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773840/ERR773840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773840/14913_2#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773840/14913_2#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 235604980;6990 ERS566398 ERX716719 GENOMIC 12395899 429129000 2015-03-03 SC_RUN_14913_2#26 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773840/14913_2#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773840/14913_2#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#26 ERR774484 SC_EXP_14936_4#11 220 8bd67eceeeedc2ae7353b829b94b805b;452789ed818d1099d5ce87c76d718ede 1313 aa6ad1c1eeb4249e1cf5dc34d49c7ce1;baf31db1c80dcefa51ee0dfa82d96a79 SAMEA2814316 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774484/ERR774484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774484/ERR774484_2.fastq.gz 3989240 WGS GPS_ZA_2528-sc-2138110 RANDOM 143358609;144127940 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774484/ERR774484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774484/ERR774484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774484/14936_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774484/14936_4#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774484/ERR774484_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774484/ERR774484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774484/14936_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774484/14936_4#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239588274;6524 ERS566684 ERX717363 GENOMIC 12347943 398924000 2015-03-03 SC_RUN_14936_4#11 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774484/14936_4#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774484/14936_4#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#11 ERR774628 SC_EXP_14936_5#64 211 a3ec356d94432f8f7093a140b1b761a3;266feb47363cbe008b035a0b842f4cc4 1313 70787f4536d893e65c7cbd4a52c1b934;f3d3839c01df7fcdb5de270a1f3aef79 SAMEA2783716 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774628/ERR774628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774628/ERR774628_2.fastq.gz 5605784 WGS GPS_MW_C7253_R1-sc-2022211 RANDOM 203443958;205619434 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774628/ERR774628_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774628/ERR774628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774628/14936_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774628/14936_5#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774628/ERR774628_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774628/ERR774628_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774628/14936_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774628/14936_5#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 340599783;9037 ERS553461 ERX717507 GENOMIC 12403555 560578400 2015-03-03 SC_RUN_14936_5#64 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774628/14936_5#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774628/14936_5#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_5#64 ERR774164 SC_EXP_14913_5#69 225 edf8555bfc7d64aa494648fb71979a8d;52c726c13f8d9f1aa54b0ee480291467 1313 0ddc4e740e9a1ef1b9fd5216262ae6d5;496a7f3421e9ede90e5d9e80ec3e9a58 SAMEA2814469 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774164/ERR774164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774164/ERR774164_2.fastq.gz 5192876 WGS GPS_ZA_2681-sc-2138264 RANDOM 168582754;176283991 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774164/ERR774164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774164/ERR774164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774164/14913_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774164/14913_5#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774164/ERR774164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774164/ERR774164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774164/14913_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774164/14913_5#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283130665;8478 ERS566837 ERX717043 GENOMIC 12403423 519287600 2015-03-03 SC_RUN_14913_5#69 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774164/14913_5#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774164/14913_5#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#69 ERR750853 SC_EXP_14723_2#30 226 328b49650018f7e5bf84770b9db372b0;521ceece4fb748764af837bda4d42fd9 1313 47928d22011a2d5b134d54d2320bd00b;0bcea8a7c9cb5ee3034b245693b350a4 SAMEA2797103 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750853/ERR750853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750853/ERR750853_2.fastq.gz 5913192 WGS GPS_US_PATH3655-sc-2139130 RANDOM 216604874;219989858 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750853/ERR750853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750853/ERR750853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750853/14723_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750853/14723_2#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750853/ERR750853_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750853/ERR750853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750853/14723_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750853/14723_2#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 363239360;9605 ERS558714 ERX694535 GENOMIC 12133643 591319200 2015-02-03 SC_RUN_14723_2#30 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750853/14723_2#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750853/14723_2#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_2#30 ERR742541 SC_EXP_14673_3#39 214 c6edfd8fcbb8d036a41f2e57c17bde4c;75f0d89170ae4dcaf00353e497d150f8 1313 1e90e3fb31832a0d99a113bfd4dd99af;5e2768ee913e02487bf58088e9ef09bf SAMEA2796637 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742541/ERR742541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742541/ERR742541_2.fastq.gz 4790112 WGS GPS_US_3390_06-sc-2138618 RANDOM 154174554;160298408 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742541/ERR742541_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742541/ERR742541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742541/14673_3#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742541/14673_3#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742541/ERR742541_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742541/ERR742541_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742541/14673_3#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742541/14673_3#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 254629206;7694 ERS558248 ERX686224 GENOMIC 12061948 479011200 2015-01-27 SC_RUN_14673_3#39 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742541/14673_3#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742541/14673_3#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#39 ERR750820 SC_EXP_14723_1#92 225 783aba534b9338c1983ef840d65db915;e28ec9dc3c29e6d7cc0ef277359ded43 1313 048965ad064494fb7dca06256e090e43;a5e5264ad74b2901d3acb778a3ae7454 SAMEA2797070 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750820/ERR750820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750820/ERR750820_2.fastq.gz 5140234 WGS GPS_US_PATH3618-sc-2139097 RANDOM 187908484;190357458 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750820/ERR750820_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750820/ERR750820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750820/14723_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750820/14723_1#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750820/ERR750820_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750820/ERR750820_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750820/14723_1#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750820/14723_1#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313341257;8369 ERS558681 ERX694502 GENOMIC 12123393 514023400 2015-02-03 SC_RUN_14723_1#92 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750820/14723_1#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750820/14723_1#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#92 ERR742474 SC_EXP_14673_2#60 220 b4daf215a82f6945a55a33448785f7d3;979f7e41ad511f33d95ba44e3b78d7bf 1313 c606452e5fe434599f8826dd98805433;93a38545735db3762be6e326b898ab4a SAMEA2796563 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742474/ERR742474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742474/ERR742474_2.fastq.gz 4655804 WGS GPS_US_4062_03-sc-2138543 RANDOM 146284012;152253423 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742474/ERR742474_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742474/ERR742474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742474/14673_2#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742474/14673_2#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742474/ERR742474_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742474/ERR742474_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742474/14673_2#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742474/14673_2#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241845038;7468 ERS558174 ERX686157 GENOMIC 12061818 465580400 2015-01-27 SC_RUN_14673_2#60 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742474/14673_2#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742474/14673_2#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#60 ERR742336 SC_EXP_14673_1#3 214 4ad3bd0f7ae21a517a8603e426540791;3a7c60540525716ff4d7724223cf1905 1313 92ce2a61155dc72f0cfa6d945e89e53b;937e07af3dbe57f9b0756d2094f937c2 SAMEA2796411 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742336/ERR742336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742336/ERR742336_2.fastq.gz 6030102 WGS GPS_US_2012220420-sc-2138390 RANDOM 192124010;199214961 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742336/ERR742336_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742336/ERR742336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742336/14673_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742336/14673_1#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742336/ERR742336_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742336/ERR742336_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742336/14673_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742336/14673_1#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318783738;9744 ERS558022 ERX686019 GENOMIC 12061702 603010200 2015-01-27 SC_RUN_14673_1#3 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742336/14673_1#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742336/14673_1#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#3 ERR742382 SC_EXP_14673_1#57 214 59247a580d99d0bfe9474e126848ece1;dc3c3af7fd04cf4c2f2278bbfb6101d3 1313 a14e5a5b5bee417b77e434769b2cdabd;75005b14c010d944044487fa97232ddf SAMEA2796465 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742382/ERR742382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742382/ERR742382_2.fastq.gz 5902200 WGS GPS_US_4268_07-sc-2138444 RANDOM 190362380;198460306 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742382/ERR742382_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742382/ERR742382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742382/14673_1#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742382/14673_1#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742382/ERR742382_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742382/ERR742382_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742382/14673_1#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742382/14673_1#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 315805912;9409 ERS558076 ERX686065 GENOMIC 12061685 590220000 2015-01-27 SC_RUN_14673_1#57 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742382/14673_1#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742382/14673_1#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#57 ERR742434 SC_EXP_14673_2#15 220 fa22dd1766088dd3e90ec6aa7878d116;c11015bccc70e743b2133889173b1e99 1313 c670109773ca186c50af5d4bc5096b57;9eca900bea0969b96b96fd6121f72342 SAMEA2796518 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742434/ERR742434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742434/ERR742434_2.fastq.gz 6076752 WGS GPS_US_5808_04-sc-2138498 RANDOM 190489430;197813567 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742434/ERR742434_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742434/ERR742434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742434/14673_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742434/14673_2#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742434/ERR742434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742434/ERR742434_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742434/14673_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742434/14673_2#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 315377133;9763 ERS558129 ERX686117 GENOMIC 12061848 607675200 2015-01-27 SC_RUN_14673_2#15 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742434/14673_2#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742434/14673_2#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#15 ERR742412 SC_EXP_14673_1#87 214 c521d83a5e4fa41f81a31d38077f92e9;2ea507e5e50b6d384302833f3c52ff8f 1313 210d94e9213f9c1cb82fa907d8cc71dc;a7c09e5eedb08b19d2d3790069cd9f78 SAMEA2796495 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742412/ERR742412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742412/ERR742412_2.fastq.gz 6199856 WGS GPS_US_2008232831-sc-2138474 RANDOM 197586225;205659198 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742412/ERR742412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742412/ERR742412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742412/14673_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742412/14673_1#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742412/ERR742412_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742412/ERR742412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742412/14673_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742412/14673_1#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 328133889;9991 ERS558106 ERX686095 GENOMIC 12061760 619985600 2015-01-27 SC_RUN_14673_1#87 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742412/14673_1#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742412/14673_1#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#87 ERR742663 SC_EXP_14673_4#67 209 17a0542bb35a891de5ea8c5490234c8a;d370e81e59917ab6944d471fbba0aca3 1313 9318f934d089b41ac5b52d093d460a05;78186df922e4be167bb223ae947ea19a SAMEA2796760 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742663/ERR742663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742663/ERR742663_2.fastq.gz 5042450 WGS GPS_US_2010202229_R1-sc-2138744 RANDOM 160635635;165831267 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742663/ERR742663_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742663/ERR742663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742663/14673_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742663/14673_4#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742663/ERR742663_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742663/ERR742663_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742663/14673_4#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742663/14673_4#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265471474;8231 ERS558371 ERX686346 GENOMIC 12062001 504245000 2015-01-27 SC_RUN_14673_4#67 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742663/14673_4#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742663/14673_4#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#67 ERR742659 SC_EXP_14673_4#63 209 7947c96b328b2d4037ceab90ed43edd2;da35e7df06d3d8a6cf1ff5459bb61cb7 1313 c4171b39c854a1aa605647190ff642bc;a3369980e9d7b25503bb38de84328037 SAMEA2796756 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742659/ERR742659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742659/ERR742659_2.fastq.gz 5578710 WGS GPS_US_2010208461_R1-sc-2138740 RANDOM 179329445;186198959 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742659/ERR742659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742659/ERR742659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742659/14673_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742659/14673_4#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742659/ERR742659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742659/ERR742659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742659/14673_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742659/14673_4#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298420919;8998 ERS558367 ERX686342 GENOMIC 12062048 557871000 2015-01-27 SC_RUN_14673_4#63 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742659/14673_4#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742659/14673_4#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#63 ERR742631 SC_EXP_14673_4#35 209 9c143487a883da37657eec3bcfc0e624;b1f7a35f4e92b0d048b312f6c5a7cb07 1313 e494ef9ca922f27d87536236e83958f5;58ee549df05de6d05276d1d79b598ca6 SAMEA2796728 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742631/ERR742631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742631/ERR742631_2.fastq.gz 4806004 WGS GPS_US_2009209974_R1-sc-2138712 RANDOM 155106928;160955694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742631/ERR742631_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742631/ERR742631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742631/14673_4#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742631/14673_4#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742631/ERR742631_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742631/ERR742631_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742631/14673_4#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742631/14673_4#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256750133;7699 ERS558339 ERX686314 GENOMIC 12061997 480600400 2015-01-27 SC_RUN_14673_4#35 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742631/14673_4#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742631/14673_4#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#35 ERR730764 SC_EXP_14566_5#4 233 146bbb88b6e569d988192ee76efc305b;7281c8c2634dfea5cb70103b01b9bbbe 1313 821727435c10a3803f3c1ad07ee14181;0d0217c24817d374d20a961f60ca15d2 SAMEA2658597 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730764/ERR730764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730764/ERR730764_2.fastq.gz 3767314 WGS GPS_ZA_1761-sc-2021205 RANDOM 106162003;107925735 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730764/ERR730764_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730764/ERR730764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730764/14566_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730764/14566_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730764/ERR730764_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730764/ERR730764_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730764/14566_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730764/14566_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 171895719;6252 ERS508625 ERX674710 GENOMIC 11838961 376731400 2015-01-14 SC_RUN_14566_5#4 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730764/14566_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730764/14566_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#4 ERR730906 SC_EXP_14566_6#51 237 016f98a181fd665485194f0543fa15c5;524fa019a4aa87225dc1271d39303e6c 1313 a3184dcc09944951a3bbf58605aaf2e8;2eb6b7cadfe6d56a72fb9a9b23f031a9 SAMEA2659000 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730906/ERR730906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730906/ERR730906_2.fastq.gz 5281826 WGS GPS_ZA_1998-sc-2021638 RANDOM 156515096;162251542 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730906/ERR730906_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730906/ERR730906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730906/14566_6#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730906/14566_6#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730906/ERR730906_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730906/ERR730906_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730906/14566_6#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730906/14566_6#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259119519;8752 ERS509028 ERX674852 GENOMIC 11887130 528182600 2015-01-14 SC_RUN_14566_6#51 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730906/14566_6#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730906/14566_6#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#51 ERR742637 SC_EXP_14673_4#41 209 31edf54574697fe4fd0eba107b8ed6e3;9c05ed4d700309f88eec7e8e9d2796fb 1313 216a9e8ffd1852feca2b6f8374d78313;ff78deec8a13d7428d19aa39a6544683 SAMEA2796734 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742637/ERR742637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742637/ERR742637_2.fastq.gz 4855574 WGS GPS_US_2009213994_R1-sc-2138718 RANDOM 156363011;160726651 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742637/ERR742637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742637/ERR742637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742637/14673_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742637/14673_4#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742637/ERR742637_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742637/ERR742637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742637/14673_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742637/14673_4#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257245021;7802 ERS558345 ERX686320 GENOMIC 12061974 485557400 2015-01-27 SC_RUN_14673_4#41 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742637/14673_4#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742637/14673_4#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#41 ERR716246 SC_EXP_14412_3#69 227 2881c81600bd2c4df4cf445cac4eb0b2;612e1a7482d351924888eaf74948e012 1313 7fd16bb68515b81846fc96abf496c746;28f2bd0cbf2644347aef180a8d147b49 SAMEA2674713 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716246/ERR716246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716246/ERR716246_2.fastq.gz 4203616 WGS 2000180-sc-2020066 RANDOM 144471189;146838272 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716246/ERR716246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716246/ERR716246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716246/14412_3#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716246/14412_3#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716246/ERR716246_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716246/ERR716246_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716246/14412_3#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716246/14412_3#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 239491630;6934 ERS515228 ERX660168 GENOMIC 11617136 420361600 2015-01-08 SC_RUN_14412_3#69 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716246/14412_3#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716246/14412_3#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 14412_3#69 ERR714725 SC_EXP_14412_2#93 223 909a39ab6b479ecb37be0db124605e7e;7d00c6a321e015cc998d616d114c2b9d 1313 9d63f815e43a78bc5c6c9b839b21df88;6016d5d8b1b8240175ce966618a75f52 SAMEA2658922 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714725/ERR714725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714725/ERR714725_2.fastq.gz 4274082 WGS GPS_ZA_1945-sc-2021559 RANDOM 146472673;148387946 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714725/ERR714725_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714725/ERR714725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714725/14412_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714725/14412_2#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714725/ERR714725_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714725/ERR714725_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714725/14412_2#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714725/14412_2#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241516568;7074 ERS508950 ERX658647 GENOMIC 11883014 427408200 2015-01-08 SC_RUN_14412_2#93 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714725/14412_2#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714725/14412_2#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#93 ERR714681 SC_EXP_14412_2#49 223 41d950a1a7a08f90fb512c622a92bc17;d02037f1ee771d3cb26e30ca8f53e135 1313 bc89b5ee962450de200fa629c981bd49;268782ec6ae2b23aa82d073ce7cd4c14 SAMEA2658861 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714681/ERR714681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714681/ERR714681_2.fastq.gz 5260142 WGS GPS_ZA_1901-sc-2021498 RANDOM 180731339;183563768 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714681/ERR714681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714681/ERR714681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714681/14412_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714681/14412_2#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714681/ERR714681_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714681/ERR714681_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714681/14412_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714681/14412_2#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298979121;8687 ERS508889 ERX658603 GENOMIC 11882961 526014200 2015-01-08 SC_RUN_14412_2#49 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714681/14412_2#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714681/14412_2#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#49 ERR600190 SC_EXP_13414_2#57 233 b8f6792aa898fc0d0f41b2f903cee6ac;30f93fac8f6fac440d14c4b74c3b5285 1313 f5996d458fae7c469cf11b8ab829205e;0ef9fecc526db41bf3be8bbf2b341e45 SAMEA2521608 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600190/ERR600190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600190/ERR600190_2.fastq.gz 5046650 WGS 2012220659-sc-1946900 RANDOM 167564674;173372091 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600190/ERR600190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600190/ERR600190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600190/13414_2#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600190/13414_2#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600190/ERR600190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600190/ERR600190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600190/13414_2#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600190/13414_2#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279655601;8299 ERS455148 ERX557019 GENOMIC 10600501 504665000 2014-09-16 SC_RUN_13414_2#57 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600190/13414_2#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600190/13414_2#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#57 ERR600174 SC_EXP_13414_2#38 233 c40e3bcd7c93258cf450456f32fc629f;41ed6944321429488694c74cbe17b65c 1313 ce2707de54471c6522f0142fe5aa3baa;b966e4d0136a0f3d11bb91214fb0b55d SAMEA2521589 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600174/ERR600174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600174/ERR600174_2.fastq.gz 5852296 WGS 2012225592-sc-1946881 RANDOM 195227700;201233475 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600174/ERR600174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600174/ERR600174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600174/13414_2#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600174/13414_2#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600174/ERR600174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600174/ERR600174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600174/13414_2#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600174/13414_2#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325880084;9603 ERS455129 ERX557003 GENOMIC 10600558 585229600 2014-09-16 SC_RUN_13414_2#38 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600174/13414_2#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600174/13414_2#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#38 ERR600155 SC_EXP_13414_2#14 233 c9867b91b5846370d03d9cd597777740;7b799a53aeb8e1bd19212dfa0c0c4347 1313 547974ee7123606efadbde208b928a36;ed9f91ee4408a78bee6e202c0e20f4d1 SAMEA2521565 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600155/ERR600155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600155/ERR600155_2.fastq.gz 5322510 WGS 2012217274-sc-1946857 RANDOM 177429055;180569257 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600155/ERR600155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600155/ERR600155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600155/13414_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600155/13414_2#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600155/ERR600155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600155/ERR600155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600155/13414_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600155/13414_2#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293637676;8701 ERS455105 ERX556984 GENOMIC 10600555 532251000 2014-09-16 SC_RUN_13414_2#14 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600155/13414_2#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600155/13414_2#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#14 ERR600149 SC_EXP_13414_2#4 233 5473475056a4238c303e075b51494fd1;f261f33ebe6bba66f714ea0c89b6dfd4 1313 a3e71174afd8f64677e322c992135504;7f980609c0dd2c3edf6a20d412be87e1 SAMEA2521555 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600149/ERR600149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600149/ERR600149_2.fastq.gz 5893772 WGS 2012213946-sc-1946847 RANDOM 196570099;200118594 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600149/ERR600149_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600149/ERR600149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600149/13414_2#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600149/13414_2#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600149/ERR600149_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600149/ERR600149_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600149/13414_2#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600149/13414_2#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326213691;9713 ERS455095 ERX556978 GENOMIC 10600530 589377200 2014-09-16 SC_RUN_13414_2#4 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600149/13414_2#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600149/13414_2#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#4 ERR600147 SC_EXP_13414_2#2 233 ea77f31440e021f422d2d966e61eb1d2;6bb8954a577c29aa8b2917a092537a83 1313 245d2c0e497d4042bb945e3e6f8debaa;5a6017cc7273ff4b42db6c56f9842740 SAMEA2521553 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600147/ERR600147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600147/ERR600147_2.fastq.gz 5664156 WGS 2012212663-sc-1946845 RANDOM 188705981;193093428 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600147/ERR600147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600147/ERR600147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600147/13414_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600147/13414_2#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600147/ERR600147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600147/ERR600147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600147/13414_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600147/13414_2#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 316020485;9306 ERS455093 ERX556976 GENOMIC 10600506 566415600 2014-09-16 SC_RUN_13414_2#2 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600147/13414_2#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600147/13414_2#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#2 ERR600140 SC_EXP_13414_1#87 292 bb6313a9db2d0ac13fe6fa211d9dafad;fcd6c1d401f70b0816fcdb7739546fa9 1313 9e88297d8627f7b2ac5131b23d50b5d3;53c0586dacf5ca0be4a6355b85c3cab0 SAMEA2521543 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600140/ERR600140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600140/ERR600140_2.fastq.gz 5277156 WGS 2013208527-sc-1946834 RANDOM 178700521;182765732 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600140/ERR600140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600140/ERR600140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600140/13414_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600140/13414_1#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600140/ERR600140_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600140/ERR600140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600140/13414_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600140/13414_1#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298853330;8665 ERS455083 ERX556969 GENOMIC 10524191 527715600 2014-09-16 SC_RUN_13414_1#87 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600140/13414_1#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600140/13414_1#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#87 ERR600307 SC_EXP_13414_4#41 250 440d00c086b9b6a44df292cc73b2c547;edcd28b28f3293f2423ad0e33ff58549 1313 cb7ca9547981f06ded8166f7f9588478;b2fc1c6d430d47fe63a57c3901f69d8c SAMEA2521877 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600307/ERR600307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600307/ERR600307_2.fastq.gz 8543974 WGS 5090_06-sc-1947173 RANDOM 248051620;253270413 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600307/ERR600307_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600307/ERR600307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600307/13414_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600307/13414_4#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600307/ERR600307_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600307/ERR600307_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600307/13414_4#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600307/13414_4#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 408939018;13906 ERS455417 ERX557136 GENOMIC 10614625 854397400 2014-09-16 SC_RUN_13414_4#41 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600307/13414_4#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600307/13414_4#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_4#41 ERR600099 SC_EXP_13414_1#26 292 df41170a34483229767c80876382ddac;3e58c051fc9d123a7af46c508e2dfe7d 1313 9d592a0dbbe0d2b46633ecbfdf4b9c4f;db77922c14b3418abb8dd005724b69bd SAMEA2521476 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600099/ERR600099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600099/ERR600099_2.fastq.gz 6550888 WGS 2010200679-sc-1946773 RANDOM 220461491;225410770 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600099/ERR600099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600099/ERR600099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600099/13414_1#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600099/13414_1#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600099/ERR600099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600099/ERR600099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600099/13414_1#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600099/13414_1#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 367953315;10802 ERS455016 ERX556928 GENOMIC 10524124 655088800 2014-09-16 SC_RUN_13414_1#26 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600099/13414_1#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600099/13414_1#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#26 ERR600264 SC_EXP_13414_3#55 223 9d532e603d4677c2ad1c33a8a7619341;f92f2d47c71521cc119a3a2cacfad069 1313 74cea4423557d471a142589974ff563f;894a6be22571f2c1c8c32ba6a355af5e SAMEA2521701 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600264/ERR600264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600264/ERR600264_2.fastq.gz 7091394 WGS 2012211697-sc-1946994 RANDOM 233496493;237997357 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600264/ERR600264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600264/ERR600264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600264/13414_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600264/13414_3#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600264/ERR600264_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600264/ERR600264_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600264/13414_3#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600264/13414_3#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 387275625;11580 ERS455241 ERX557093 GENOMIC 10600669 709139400 2014-09-16 SC_RUN_13414_3#55 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600264/13414_3#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600264/13414_3#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#55 ERR600233 SC_EXP_13414_3#11 223 6fe888eb76e2f268c2a8079f3e9f8233;8f4729fe2e6e7f0dd06c9941ee021097 1313 0c0a0af03797d8f54ad50d0adca5e9ac;c564f5ad9565812960ea0ff1f295d093 SAMEA2521657 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600233/ERR600233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600233/ERR600233_2.fastq.gz 6792898 WGS 2012220352-sc-1946950 RANDOM 222497653;228444797 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600233/ERR600233_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600233/ERR600233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600233/13414_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600233/13414_3#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600233/ERR600233_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600233/ERR600233_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600233/13414_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600233/13414_3#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 372482328;11128 ERS455197 ERX557062 GENOMIC 10600616 679289800 2014-09-16 SC_RUN_13414_3#11 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600233/13414_3#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600233/13414_3#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#11 ERR600201 SC_EXP_13414_2#68 233 d14cbfc01ed1268142f8e8ddede52f92;c96c876fd44742199e2664bc935ecbcd 1313 01c249e713267def0526f441bb43cab9;50f74df15887bafdf0873a915e56fa21 SAMEA2521619 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600201/ERR600201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600201/ERR600201_2.fastq.gz 4843354 WGS 2012219980-sc-1946911 RANDOM 162731873;167818335 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600201/ERR600201_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600201/ERR600201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600201/13414_2#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600201/13414_2#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600201/ERR600201_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600201/ERR600201_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600201/13414_2#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600201/13414_2#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 271935633;7852 ERS455159 ERX557030 GENOMIC 10600538 484335400 2014-09-16 SC_RUN_13414_2#68 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600201/13414_2#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600201/13414_2#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#68 ERR600207 SC_EXP_13414_2#74 233 9afa0e5630ed768f52bbe696dbe1b33a;502f96e89313d87b74857ef75d4ad725 1313 465e6f70be639866c98dd31f820acd1f;d9e538ef57afc3d82216fde9530e1d40 SAMEA2521625 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600207/ERR600207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600207/ERR600207_2.fastq.gz 4959832 WGS 2012218036-sc-1946917 RANDOM 165708400;170188201 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600207/ERR600207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600207/ERR600207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600207/13414_2#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600207/13414_2#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600207/ERR600207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600207/ERR600207_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600207/13414_2#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600207/13414_2#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278496825;8123 ERS455165 ERX557036 GENOMIC 10600515 495983200 2014-09-16 SC_RUN_13414_2#74 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600207/13414_2#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600207/13414_2#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#74 ERR600251 SC_EXP_13414_3#34 223 8d8d2630c8b912d7246bdfd9e349a4d2;4111a5362e8f0d2dcffcdf8215e165be 1313 81f11fc1cf2603ff20d1bb7967906ea8;35fa7419c9e6753df0dac11f2bece0ff SAMEA2521680 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600251/ERR600251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600251/ERR600251_2.fastq.gz 6760794 WGS 2012224889-sc-1946973 RANDOM 220568233;226098278 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600251/ERR600251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600251/ERR600251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600251/13414_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600251/13414_3#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600251/ERR600251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600251/ERR600251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600251/13414_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600251/13414_3#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 367879024;11130 ERS455220 ERX557080 GENOMIC 10600607 676079400 2014-09-16 SC_RUN_13414_3#34 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600251/13414_3#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600251/13414_3#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#34 ERR596411 SC_EXP_13353_7#64 259 0055a6eff80ccf612d7643d73ec0c2ca;ad5864820d358de9dabcbd4f5d6a2e75 1313 e0abdcc2370778655de6441f1c841aaa;0bbdacf29407b3674362a9a54e12451c SAMEA2521805 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596411/ERR596411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596411/ERR596411_2.fastq.gz 9068314 WGS 2012215622-sc-1947099 RANDOM 285600600;296051154 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596411/ERR596411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596411/ERR596411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596411/13353_7#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596411/13353_7#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596411/ERR596411_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596411/ERR596411_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596411/13353_7#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596411/13353_7#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 481690903;14677 ERS455345 ERX553374 GENOMIC 10552925 906831400 2014-09-09 SC_RUN_13353_7#64 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596411/13353_7#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596411/13353_7#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#64 ERR570386 SC_EXP_12837_4#73 226 0f557f2a89e5a8ee7f0d191a03da6151;dbdc09a2246d35b9d3e3babc013b30d8 1313 d377cf314553b5b0feccf867ae94f249;211d8592ca42ee59bb175fbd3ee4ea48 SAMEA2434749 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570386/ERR570386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570386/ERR570386_2.fastq.gz 5115048 WGS SA_GPS_SP644-sc-1895815 RANDOM 174453940;177808925 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570386/ERR570386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570386/ERR570386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570386/12837_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570386/12837_4#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570386/ERR570386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570386/ERR570386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570386/12837_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570386/12837_4#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291318015;8499 ERS428926 ERX529375 GENOMIC 9986202 511504800 2014-07-28 SC_RUN_12837_4#73 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570386/12837_4#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570386/12837_4#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_4#73 ERR505767 SC_EXP_12291_4#54 230 dc6d844107f7dc1615553608fe8d53f5;184e83ddc26dd5f8c36bb966dfb6f7bc 1313 2a3d55463d2dad5e3513e488a147dbcc;2d94e9bfe16e18740e273612665243ab SAMEA2335986 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505767/ERR505767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505767/ERR505767_2.fastq.gz 5480042 WGS 2010216221-sc-1810914 RANDOM 172789625;177981807 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505767/ERR505767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505767/ERR505767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505767/12291_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505767/12291_4#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505767/ERR505767_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505767/ERR505767_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505767/12291_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505767/12291_4#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287470322;9031 ERS394180 ERX471124 GENOMIC 9444708 548004200 2014-05-19 SC_RUN_12291_4#54 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505767/12291_4#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505767/12291_4#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#54 ERR554891 SC_EXP_12673_6#60 221 f934ba81be5c6b380fcdff9459d60cd9;b888d6b10011f89b3aad9e49b9b97fe9 1313 61e1f8f99fd5a386edd70627572af77f;1370e65eed0d6c27b6c9cd7160460e4d SAMEA2382605 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554891/ERR554891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554891/ERR554891_2.fastq.gz 4539700 WGS 2120994-sc-1869850 RANDOM 147999325;166573609 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554891/ERR554891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554891/ERR554891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554891/12673_6#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554891/12673_6#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554891/ERR554891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554891/ERR554891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554891/12673_6#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554891/12673_6#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 261324038;7550 ERS408930 ERX513960 GENOMIC 9798940 453970000 2014-07-02 SC_RUN_12673_6#60 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554891/12673_6#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554891/12673_6#60.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#60 ERR505511 SC_EXP_12291_1#53 213 01ba43a9504d714e397836882bf34a05;9a2a2c569b30b903608408a71976f079 1313 31bb4b9be665dcd5d8ee11390d827299;aacc3f8510386b56c9840a8e50aa5bc7 SAMEA2335712 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505511/ERR505511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505511/ERR505511_2.fastq.gz 4014164 WGS PATH2549-sc-1810637 RANDOM 124727017;128726803 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505511/ERR505511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505511/ERR505511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505511/12291_1#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505511/12291_1#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505511/ERR505511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505511/ERR505511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505511/12291_1#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505511/12291_1#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 206788961;6662 ERS393906 ERX470868 GENOMIC 9441150 401416400 2014-05-19 SC_RUN_12291_1#53 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505511/12291_1#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505511/12291_1#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#53 ERR461901 SC_EXP_11893_1#77 234 8662a134f85980f662ba8efe46bb21e3;01f0050a265a8c8ed6442ba56c220e07 1313 0503311d02f07e2f7cb77d9baf79d1a3;40cf78072d765daa706972c2ca71fe47 SAMEA2238836 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461901/ERR461901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461901/ERR461901_2.fastq.gz 4079940 WGS 2103678-sc-2013-11-05T12:03:14Z-1750199 RANDOM 136643887;141329430 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461901/ERR461901_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461901/ERR461901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461901/11893_1#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461901/11893_1#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461901/ERR461901_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461901/ERR461901_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461901/11893_1#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461901/11893_1#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 229714993;6782 ERS367648 ERX428242 GENOMIC 9028181 407994000 2014-03-18 SC_RUN_11893_1#77 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461901/11893_1#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461901/11893_1#77.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#77 ERR461896 SC_EXP_11893_1#72 234 507b63e24304fb19034a80300861c230;17e8759865bfe54106e7766c53049b48 1313 41967a668d3a7114f333e6d94f0ca071;42d52dc6d87a61795be5a660a6e7c02b SAMEA2238831 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461896/ERR461896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461896/ERR461896_2.fastq.gz 4459346 WGS 2103590-sc-2013-11-05T12:03:09Z-1750194 RANDOM 148914971;153501956 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461896/ERR461896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461896/ERR461896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461896/11893_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461896/11893_1#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461896/ERR461896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461896/ERR461896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461896/11893_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461896/11893_1#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 249190325;7426 ERS367643 ERX428237 GENOMIC 9028216 445934600 2014-03-18 SC_RUN_11893_1#72 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461896/11893_1#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461896/11893_1#72.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#72 ERR461603 SC_EXP_11861_3#52 226 fbd0592a68de100d688d03a53d57d1e8;adf5b608a95368ef3d46415534f35054 1313 f4db1ef628027c4ff2a692fac1b67e94;a18c8eaaba523f3d675b65f0a8845b66 SAMEA2238904 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461603/ERR461603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461603/ERR461603_2.fastq.gz 4318542 WGS 2110786-sc-2013-11-05T12:04:40Z-1750268 RANDOM 141704043;148301232 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461603/ERR461603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461603/ERR461603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461603/11861_3#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461603/11861_3#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461603/ERR461603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461603/ERR461603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461603/11861_3#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461603/11861_3#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 238061517;7077 ERS367716 ERX427944 GENOMIC 9016248 431854200 2014-03-18 SC_RUN_11861_3#52 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461603/11861_3#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461603/11861_3#52.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#52 ERR461557 SC_EXP_11861_3#3 226 f37cddfee4529b0db23f1a17f93bd71a;66a2be894177c10a4f5c2fd32aea7c86 1313 214b670c2aeb3315d6540c12c75ed5ca;df3e5678252f52803360e9d5916c6f59 SAMEA2238858 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461557/ERR461557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461557/ERR461557_2.fastq.gz 4162748 WGS 2110087-sc-2013-11-05T12:03:54Z-1750222 RANDOM 137280851;145483380 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461557/ERR461557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461557/ERR461557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461557/11861_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461557/11861_3#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461557/ERR461557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461557/ERR461557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461557/11861_3#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461557/11861_3#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 233559176;6913 ERS367670 ERX427898 GENOMIC 9016230 416274800 2014-03-18 SC_RUN_11861_3#3 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461557/11861_3#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461557/11861_3#3.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#3 ERR461899 SC_EXP_11893_1#75 234 1ec8fe311d595e75cf3cd5a97f07964d;d418b8140cb95179918bceeb91564c4b 1313 8faf049b5f614bbf41d5c4e84db0bd69;df40a9c36754186e62d8993f5f7cf8d9 SAMEA2238834 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461899/ERR461899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461899/ERR461899_2.fastq.gz 4212020 WGS 2103629-sc-2013-11-05T12:03:12Z-1750197 RANDOM 140082435;144445629 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461899/ERR461899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461899/ERR461899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461899/11893_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461899/11893_1#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461899/ERR461899_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461899/ERR461899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461899/11893_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461899/11893_1#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 234502673;7017 ERS367646 ERX428240 GENOMIC 9028157 421202000 2014-03-18 SC_RUN_11893_1#75 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461899/11893_1#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461899/11893_1#75.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#75 ERR461167 SC_EXP_11860_6#71 233 757156ef38828c391508389ae7cf5fca;01fb25ef86c972591cda8acd28a8d07c 1313 6bde3dd87b39c5f4a6454765b11e318c;4986f2240db32f6202e9aa9303d78db4 SAMEA2238537 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461167/ERR461167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461167/ERR461167_2.fastq.gz 3816494 WGS 2080807-sc-2013-11-05T11:58:09Z-1749897 RANDOM 121411452;129048152 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461167/ERR461167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461167/ERR461167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461167/11860_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461167/11860_6#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461167/ERR461167_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461167/ERR461167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461167/11860_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461167/11860_6#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 206022695;6402 ERS367349 ERX427508 GENOMIC 9015599 381649400 2014-03-18 SC_RUN_11860_6#71 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461167/11860_6#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461167/11860_6#71.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR433944 SC_EXP_11658_8#3 250 2098e1630482bb326b6d3d865f1b0e4a;ac074ad2ec956bbded67cde09904f701 1313 e757a08bd39b6dbfd7a101b12f1483e9;c25bd17ea9e46312731b417b68aa9dd7 SAMEA2203869 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433944/ERR433944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433944/ERR433944_2.fastq.gz 4743726 WGS 2009209140-sc-2013-10-09T11:50:54Z-1712459 RANDOM 155747465;157707389 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433944/ERR433944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433944/ERR433944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433944/11658_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433944/11658_8#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433944/ERR433944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433944/ERR433944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433944/11658_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433944/11658_8#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256828072;7749 ERS356373 ERX400219 GENOMIC 8647214 474372600 2014-02-18 SC_RUN_11658_8#3 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433944/11658_8#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433944/11658_8#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_8#3 ERR563840 SC_EXP_12754_2#86 209 f94a2605666ed0ce9203921d5bd21dd5;38a4e6356b31aa325314828f34c938cf 1313 4a5294821170ac86b465bef555c1ec5a;eb89d21b5e32aec5e33cc5a30fd3609f SAMEA2383106 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563840/ERR563840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563840/ERR563840_2.fastq.gz 4811768 WGS 2100284_II-sc-1870356 RANDOM 161121497;166847539 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563840/ERR563840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563840/ERR563840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563840/12754_2#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563840/12754_2#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563840/ERR563840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563840/ERR563840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563840/12754_2#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563840/12754_2#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271926680;8030 ERS409431 ERX522865 GENOMIC 9918637 481176800 2014-07-16 SC_RUN_12754_2#86 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563840/12754_2#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563840/12754_2#86.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#86 ERR716247 SC_EXP_14412_3#70 227 063cf221d49f2814a3948fc47ae99dec;b94e6dff334c6e66bd663d268031f739 1313 ec96addf30bf09fa0b0e6cdc3ba053d4;81b42c4608322538b87aeded40560438 SAMEA2674715 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716247/ERR716247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716247/ERR716247_2.fastq.gz 4398942 WGS 2000180_II-sc-2020068 RANDOM 150771743;152520841 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716247/ERR716247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR716/ERR716247/ERR716247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716247/14412_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716247/14412_3#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716247/ERR716247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR716/ERR716247/ERR716247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716247/14412_3#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR716/ERR716247/14412_3#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 247524001;7251 ERS515230 ERX660169 GENOMIC 11617148 439894200 2015-01-08 SC_RUN_14412_3#70 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716247/14412_3#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR716/ERR716247/14412_3#70.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA398042 14412_3#70 ERR563662 SC_EXP_12754_1#3 223 eab926619e78ef0d18d39f10f81d351f;197481fe7ecc04bf815a0fca4870e3fd 1313 b7e120486c582d1661fc400a79f75839;acb488ec04e9a27f832ffc0113711641 SAMEA2382928 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563662/ERR563662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563662/ERR563662_2.fastq.gz 4803850 WGS 2071939_II-sc-1870177 RANDOM 157059102;162262238 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563662/ERR563662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563662/ERR563662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563662/12754_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563662/12754_1#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563662/ERR563662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563662/ERR563662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563662/12754_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563662/12754_1#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 263422662;8039 ERS409253 ERX522687 GENOMIC 9918494 480385000 2014-07-16 SC_RUN_12754_1#3 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563662/12754_1#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563662/12754_1#3.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#3 ERR563789 SC_EXP_12754_2#35 209 868e97327baec7555c60b236e3b295cc;5e82f196d4185a80a74f6ce29309639d 1313 3acc4459fd42ae3c9ae389725d3d7057;bcf21ad8bcfe65715f1997efa3c118e7 SAMEA2383055 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563789/ERR563789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563789/ERR563789_2.fastq.gz 4597024 WGS 2091775_II-sc-1870305 RANDOM 154077902;159082391 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563789/ERR563789_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563789/ERR563789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563789/12754_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563789/12754_2#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563789/ERR563789_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563789/ERR563789_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563789/12754_2#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563789/12754_2#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 258549652;7601 ERS409380 ERX522814 GENOMIC 9918595 459702400 2014-07-16 SC_RUN_12754_2#35 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563789/12754_2#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563789/12754_2#35.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#35 ERR563757 SC_EXP_12754_2#3 209 642ae078bee0187eb87affdfd8fc1a36;93afe075dbc423d89e97a1715939810a 1313 b48c737e608ded95514d0400edd0c277;213ad3a3ba28e623601379fc08292acc SAMEA2383023 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563757/ERR563757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563757/ERR563757_2.fastq.gz 4974588 WGS 2090270_II-sc-1870273 RANDOM 166200729;171261003 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563757/ERR563757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563757/ERR563757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563757/12754_2#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563757/12754_2#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563757/ERR563757_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563757/ERR563757_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563757/12754_2#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563757/12754_2#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 278927943;8308 ERS409348 ERX522782 GENOMIC 9918591 497458800 2014-07-16 SC_RUN_12754_2#3 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563757/12754_2#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563757/12754_2#3.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#3 ERR563991 SC_EXP_12754_4#48 232 60cd22e8e014b08d3fa209e0b8cf71a4;2c04bacc30f8ee7768f463a9fd5375b8 1313 48678ef84356bd8c4fcf8664f67b39fa;501f3a5d82b9f1bf0c3cd19fae61796b SAMEA2383258 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563991/ERR563991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563991/ERR563991_2.fastq.gz 4863118 WGS 2120994_II-sc-1870510 RANDOM 166989381;171371203 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563991/ERR563991_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563991/ERR563991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563991/12754_4#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563991/12754_4#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563991/ERR563991_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563991/ERR563991_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563991/12754_4#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563991/12754_4#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 279800058;8110 ERS409583 ERX523016 GENOMIC 9922293 486311800 2014-07-16 SC_RUN_12754_4#48 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563991/12754_4#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563991/12754_4#48.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#48 ERR563773 SC_EXP_12754_2#19 209 def1bf468c50a1d0450642c319468aa7;eb03bb70e0ea6a2834ebbe16136c5d2f 1313 e3456e9119aa2cd6cedfb731fd3e2890;006023e0c1d7e004ef08d5c881d349ea SAMEA2383039 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563773/ERR563773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563773/ERR563773_2.fastq.gz 4672998 WGS 2090930_II-sc-1870289 RANDOM 155478393;160482446 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563773/ERR563773_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563773/ERR563773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563773/12754_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563773/12754_2#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563773/ERR563773_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563773/ERR563773_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563773/12754_2#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563773/12754_2#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 259715921;7786 ERS409364 ERX522798 GENOMIC 9918593 467299800 2014-07-16 SC_RUN_12754_2#19 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563773/12754_2#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563773/12754_2#19.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#19 ERR563928 SC_EXP_12754_3#79 235 9f306d6e7b745fc6dea597185a5d867c;f293bb5f921842bd03510ce0a9e80452 1313 c482409a2ac7676d38bb8a58bacc14f5;89d1cddc33f4281157ac8dcf53eac6f1 SAMEA2383194 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563928/ERR563928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563928/ERR563928_2.fastq.gz 5192986 WGS 2110786_II-sc-1870445 RANDOM 177748515;182859289 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563928/ERR563928_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563928/ERR563928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563928/12754_3#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563928/12754_3#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563928/ERR563928_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563928/ERR563928_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563928/12754_3#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563928/12754_3#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 298256291;8568 ERS409519 ERX522953 GENOMIC 9922091 519298600 2014-07-16 SC_RUN_12754_3#79 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563928/12754_3#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563928/12754_3#79.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#79 ERR563899 SC_EXP_12754_3#50 235 0e151a8da99f3e971f3f53fe97a9ea73;a254f15c8ffedf5616762a0c6cba9272 1313 3f929c0eb8ef20a68d5d017164015b76;f679e02bf7092380f770c52344537449 SAMEA2383165 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563899/ERR563899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563899/ERR563899_2.fastq.gz 4458364 WGS 2110087_II-sc-1870416 RANDOM 152085739;156144239 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563899/ERR563899_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563899/ERR563899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563899/12754_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563899/12754_3#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563899/ERR563899_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563899/ERR563899_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563899/12754_3#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563899/12754_3#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 254601412;7396 ERS409490 ERX522924 GENOMIC 9922028 445836400 2014-07-16 SC_RUN_12754_3#50 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563899/12754_3#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563899/12754_3#50.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#50 ERR563885 SC_EXP_12754_3#36 235 fdf460c83459efd2559c950a267a4fdd;766f1d2f68a452129fd592f4b10b36a8 1313 c0a4eaced69cafd0b468db963f5125ff;b198a9a4084a2b720ae026c7040bff63 SAMEA2383151 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563885/ERR563885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563885/ERR563885_2.fastq.gz 4514994 WGS 2103629_II-sc-1870402 RANDOM 153213699;157237632 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563885/ERR563885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563885/ERR563885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563885/12754_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563885/12754_3#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563885/ERR563885_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563885/ERR563885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563885/12754_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563885/12754_3#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 255696321;7506 ERS409476 ERX522910 GENOMIC 9922050 451499400 2014-07-16 SC_RUN_12754_3#36 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563885/12754_3#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563885/12754_3#36.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#36 ERR563883 SC_EXP_12754_3#34 235 ade95cdbddf8438333d47c930ec75c92;b2b094e59a8cc625c28d8c90f1885231 1313 f7488e731119c81fbd52ce5562395d29;16660a56bde9342cf0938b4d829ddbf1 SAMEA2383149 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563883/ERR563883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563883/ERR563883_2.fastq.gz 3979266 WGS 2103590_II-sc-1870400 RANDOM 135698245;139421166 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563883/ERR563883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563883/ERR563883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563883/12754_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563883/12754_3#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563883/ERR563883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563883/ERR563883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563883/12754_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563883/12754_3#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 226043699;6607 ERS409474 ERX522908 GENOMIC 9922026 397926600 2014-07-16 SC_RUN_12754_3#34 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563883/12754_3#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563883/12754_3#34.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#34 ERR559445 SC_EXP_12718_5#84 231 207429c39bca4153c64f5028f1f045fc;9f758feabcf9b6f82aa68b52d1573af6 1313 0bc5001b2cda55940bc420e71eafad7e;77959336c6e992553e2e64e38e7d72fd SAMEA2382914 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559445/ERR559445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559445/ERR559445_2.fastq.gz 4522044 WGS 2071408_II-sc-1870162 RANDOM 138814417;144333977 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559445/ERR559445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559445/ERR559445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559445/12718_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559445/12718_5#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559445/ERR559445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559445/ERR559445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559445/12718_5#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559445/12718_5#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 233182986;7504 ERS409239 ERX518481 GENOMIC 9918411 452204400 2014-07-10 SC_RUN_12718_5#84 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559445/12718_5#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559445/12718_5#84.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#84 ERR563696 SC_EXP_12754_1#37 223 32c681af7a3d1bf009092b6322c4a530;013e32cc17d0f8a6895d5de7c716d577 1313 0f9e80e0d271f4744cb63c4c4f8ff17a;27f6a15eb9eee1623a28d260519130b0 SAMEA2382962 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563696/ERR563696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563696/ERR563696_2.fastq.gz 5057278 WGS 2080611_II-sc-1870211 RANDOM 167652662;173731277 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563696/ERR563696_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563696/ERR563696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563696/12754_1#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563696/12754_1#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563696/ERR563696_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563696/ERR563696_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563696/12754_1#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563696/12754_1#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 279853982;8330 ERS409287 ERX522721 GENOMIC 9918522 505727800 2014-07-16 SC_RUN_12754_1#37 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563696/12754_1#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563696/12754_1#37.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#37 ERR2091259 SC_EXP_22841_4#150 433 14568de0654d9d28398e851781d1d894;b2784482c7250bf0c0084b2ef08df019 1313 01bf0d36316d9865a3f4440984a33d8e;146c01c16301ac2225eb98224820f736 SAMEA104035456 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091259/ERR2091259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091259/ERR2091259_2.fastq.gz 2424716 WGS a1518910-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 49077253;52947924 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091259/ERR2091259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2091259/ERR2091259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091259/22841_4#150.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091259/22841_4#150.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091259/ERR2091259_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2091259/ERR2091259_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091259/22841_4#150.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091259/22841_4#150.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71587164;4074 ERS1699349 ERX2148053 GENOMIC DN477153Q:G7 303089500 2017-08-08 SC_RUN_22841_4#150 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091259/22841_4#150.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091259/22841_4#150.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#150 ERR1788300 SC_EXP_21127_1#102 421 7c3729b017bfc1b0efe3db32ade0864b;1105e72f68dc0ffc703a0f0cc2b2335c 1313 0ae508f4614344d8c3ffa1d724ffe1db;603a0b47ce2c61a6cf5fef748c75d4a2 SAMEA4388337 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788300/ERR1788300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788300/ERR1788300_2.fastq.gz 2867338 WGS 66d3c070-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 50450287;52112902 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788300/ERR1788300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788300/ERR1788300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788300/21127_1#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788300/21127_1#102.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/000/ERR1788300/ERR1788300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/000/ERR1788300/ERR1788300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788300/21127_1#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788300/21127_1#102.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74283911;4829 ERS1299786 ERX1852023 GENOMIC DN465134A:H1 358417250 2017-01-11 SC_RUN_21127_1#102 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788300/21127_1#102.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788300/21127_1#102.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#102 ERR554957 SC_EXP_12673_7#31 217 0f3cfaa4dd2cb49a8b085c740434fd71;c695fa7e855c924fd0e2be1af62e2e6a 1313 5115d97043b9f20c8c52b55a6c85af0a;04078de5106dfe7a2405c5bedb4c4c11 SAMEA2382671 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554957/ERR554957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554957/ERR554957_2.fastq.gz 5079550 WGS 992020_II-sc-1869917 RANDOM 171521448;191394387 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554957/ERR554957_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554957/ERR554957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554957/12673_7#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554957/12673_7#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554957/ERR554957_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554957/ERR554957_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554957/12673_7#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554957/12673_7#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 302566127;8370 ERS408996 ERX514026 GENOMIC 9799069 507955000 2014-07-02 SC_RUN_12673_7#31 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554957/12673_7#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554957/12673_7#31.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#31 ERR1756438 SC_EXP_20925_3#53 409 291eebf42e6b231f14be4784394cd468;f03e12938e09bbdf872362f708ff0b53 1313 7dab80c43aac983f12d5de28478fbb2d;c2ce131fd863954790399d0ba0854f28 SAMEA4034886 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/008/ERR1756438/ERR1756438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/008/ERR1756438/ERR1756438_2.fastq.gz 5838666 WGS 3c72b4d0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 110709059;117333538 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/008/ERR1756438/ERR1756438_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/008/ERR1756438/ERR1756438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756438/20925_3#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756438/20925_3#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/008/ERR1756438/ERR1756438_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/008/ERR1756438/ERR1756438_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756438/20925_3#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756438/20925_3#53.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177522987;9642 ERS1205996 ERX1823458 GENOMIC DN461288B:F7 729833250 2016-12-13 SC_RUN_20925_3#53 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756438/20925_3#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756438/20925_3#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#53 ERR559370 SC_EXP_12718_5#9 231 d4e9a07306c69afdbcd5d3db30c3365c;140f2cae36ddc49832bd1c540b357275 1313 42384a38735607aa11a2872a75f929b5;29fc198eac300740625a2fdb0d6b5f97 SAMEA2382839 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559370/ERR559370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559370/ERR559370_2.fastq.gz 4848164 WGS 2061532_II-sc-1870087 RANDOM 149949610;156201895 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559370/ERR559370_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559370/ERR559370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559370/12718_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559370/12718_5#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559370/ERR559370_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559370/ERR559370_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559370/12718_5#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559370/12718_5#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 251739381;7965 ERS409164 ERX518406 GENOMIC 9918366 484816400 2014-07-10 SC_RUN_12718_5#9 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559370/12718_5#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559370/12718_5#9.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#9 ERR1453771 SC_EXP_19341_3#123 428 3b5a5684a7ef47a915297b4620b6abc0;93051c43849409dafbfd4f610e6c2670 1313 eacc1e98e07d58a75483953486f3f47d;e6858f63ef276f1c727b5b1297386b24 SAMEA3714088 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453771/ERR1453771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453771/ERR1453771_2.fastq.gz 2674194 WGS 42716420-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 52381590;59278735 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453771/ERR1453771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453771/ERR1453771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453771/19341_3#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453771/19341_3#123.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453771/ERR1453771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453771/ERR1453771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453771/19341_3#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453771/19341_3#123.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81488213;4529 ERS1021237 ERX1524249 GENOMIC 16008586 334274250 2016-06-14 SC_RUN_19341_3#123 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453771/19341_3#123.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453771/19341_3#123.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#123 ERR1422523 SC_EXP_19084_8#10 430 e12d7811cf65a39ebae4d10089777a3b;0effb01ba0f34f9c5bd7481d440e1f4b 1313 dab39e5606ebb4bd62cadeff4635e7d2;e6179b85191f140df07d1f83ae22f426 SAMEA3714347 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422523/ERR1422523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422523/ERR1422523_2.fastq.gz 2518854 WGS 4d1033c0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 55005274;55014629 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422523/ERR1422523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422523/ERR1422523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422523/19084_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422523/19084_8#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422523/ERR1422523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422523/ERR1422523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422523/19084_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422523/19084_8#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 78552789;4269 ERS1021496 ERX1493105 GENOMIC 15758390 314856750 2016-05-24 SC_RUN_19084_8#10 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422523/19084_8#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422523/19084_8#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#10 ERR1453602 SC_EXP_19341_2#135 427 ba1e0cc21f7fd78003c35a9b3b7e8875;d4df8e687c2b39211e52b05407b0d01a 1313 d22b816ab5414f8b02ace8507f608815;14778e6b4aac0fac7eedc070c48c74fd SAMEA3713988 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/002/ERR1453602/ERR1453602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/002/ERR1453602/ERR1453602_2.fastq.gz 2569058 WGS 3a2732e0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 48422924;56351369 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/002/ERR1453602/ERR1453602_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/002/ERR1453602/ERR1453602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453602/19341_2#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453602/19341_2#135.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/002/ERR1453602/ERR1453602_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/002/ERR1453602/ERR1453602_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453602/19341_2#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453602/19341_2#135.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75815700;4361 ERS1021137 ERX1524080 GENOMIC 15972590 321132250 2016-06-14 SC_RUN_19341_2#135 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453602/19341_2#135.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453602/19341_2#135.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#135 ERR1422387 SC_EXP_19084_7#58 486 158f7d685f2efb5cb5cb5e9c3b2adca9;063c4e391e8f81fc4476ffb802d6bd29 1313 6c7f9be54f79723ec64beb66b087814d;67e76f99a523ad6e08c8264643f89df8 SAMEA3714211 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422387/ERR1422387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422387/ERR1422387_2.fastq.gz 2367108 WGS 45a31c10-41bd-11e5-998e-3c4a9275d6c6 RANDOM 51634184;52830462 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422387/ERR1422387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422387/ERR1422387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422387/19084_7#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422387/19084_7#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422387/ERR1422387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422387/ERR1422387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422387/19084_7#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422387/19084_7#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74797561;4023 ERS1021360 ERX1492969 GENOMIC 15737991 295888500 2016-05-24 SC_RUN_19084_7#58 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422387/19084_7#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422387/19084_7#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#58 ERR1214610 SC_EXP_18090_2#102 454 4a41e5e63e090c7daaeaf454f2618978;aaf661bb8ba3960dec3c1fdaf834d436 1313 12686325803126739d7fe990919f9a7c;28c0b43be7dc2db4d73c147b2cdcd10b SAMEA3431555 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214610/ERR1214610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214610/ERR1214610_2.fastq.gz 3460620 WGS GPS_HK_105-sc-2296729 RANDOM 67527460;72718826 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214610/ERR1214610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214610/ERR1214610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214610/18090_2#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214610/18090_2#102.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214610/ERR1214610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214610/ERR1214610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214610/18090_2#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214610/18090_2#102.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 100310737;5737 ERS740840 ERX1286823 GENOMIC 15080108 432577500 2016-01-19 SC_RUN_18090_2#102 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214610/18090_2#102.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214610/18090_2#102.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#102 ERR1066200 SC_EXP_17175_7#7 468 ea27840f0bcd41b08a382aa59880b458;fd8656330f9da4d1d98e67aec8186f67 1313 a2bc8eec5901e7f7d187eb02e666e139;1dd9f155dad82eb61b1b83d27fd2e0fb SAMEA3353913 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066200/ERR1066200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066200/ERR1066200_2.fastq.gz 6522464 WGS GPS_ZA_carriage_SP1872-sc-2278517 RANDOM 117852589;122338578 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066200/ERR1066200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066200/ERR1066200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066200/17175_7#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066200/17175_7#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066200/ERR1066200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066200/ERR1066200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066200/17175_7#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066200/17175_7#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188871190;10843 ERS708268 ERX1146350 GENOMIC 14427479 815308000 2015-10-13 SC_RUN_17175_7#7 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066200/17175_7#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066200/17175_7#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#7 ERR1066197 SC_EXP_17175_7#4 468 421718d5973c0fdf07af6867c41e8415;2c6b502964cd11c90ebc2386274b1004 1313 adf3ebaee8faff8035de12d9567d325b;4e1ea7b82a2ac95831ed010f782896e3 SAMEA3353907 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066197/ERR1066197_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066197/ERR1066197_2.fastq.gz 6150038 WGS GPS_ZA_carriage_SP1869-sc-2278511 RANDOM 110624729;114639616 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066197/ERR1066197_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066197/ERR1066197_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066197/17175_7#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066197/17175_7#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066197/ERR1066197_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066197/ERR1066197_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066197/17175_7#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066197/17175_7#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 176656620;10216 ERS708262 ERX1146347 GENOMIC 14427443 768754750 2015-10-13 SC_RUN_17175_7#4 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066197/17175_7#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066197/17175_7#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#4 ERR1066191 SC_EXP_17175_6#89 449 b1ca97a3de57071b558428013b194ea2;95334b4930258f2039e7ca0f8cd29bbf 1313 a0c242c7a68df78470a3724d0349a96a;83526f739ec89e66923b8f8aa4820194 SAMEA3353898 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066191/ERR1066191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066191/ERR1066191_2.fastq.gz 5799718 WGS GPS_ZA_carriage_SP1794-sc-2278502 RANDOM 102971157;108612767 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066191/ERR1066191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066191/ERR1066191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066191/17175_6#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066191/17175_6#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1066191/ERR1066191_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1066191/ERR1066191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066191/17175_6#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066191/17175_6#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164003488;9587 ERS708253 ERX1146341 GENOMIC 14427539 724964750 2015-10-13 SC_RUN_17175_6#89 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066191/17175_6#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066191/17175_6#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#89 ERR1422433 SC_EXP_19084_7#104 446 f46b2c1977c204e9dec83c8a019cb34e;69d529ceb51fbaefb24fb1e3f4a98822 1313 cad9f203b9374b905f78cc7b4df2f561;ded6a8d5662991e7a10373e7148a7b15 SAMEA3714257 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422433/ERR1422433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422433/ERR1422433_2.fastq.gz 2026084 WGS 4a16f0f0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 43892079;43859661 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422433/ERR1422433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/003/ERR1422433/ERR1422433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422433/19084_7#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422433/19084_7#104.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422433/ERR1422433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/003/ERR1422433/ERR1422433_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422433/19084_7#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422433/19084_7#104.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 61937558;3453 ERS1021406 ERX1493015 GENOMIC 15738106 253260500 2016-05-24 SC_RUN_19084_7#104 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422433/19084_7#104.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422433/19084_7#104.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#104 ERR1066129 SC_EXP_17175_6#27 449 babb38cea057697f1abf31031c930d50;dd479cf14887ed8162798c0a59c0c9a1 1313 e08d289354ca5a974a927a6ed93f09ea;8fb422a2a6ac1a63077abeaf2992bffc SAMEA3353767 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1066129/ERR1066129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1066129/ERR1066129_2.fastq.gz 4941422 WGS GPS_ZA_carriage_SP1730-sc-2278371 RANDOM 90583659;93990798 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1066129/ERR1066129_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1066129/ERR1066129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066129/17175_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066129/17175_6#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1066129/ERR1066129_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1066129/ERR1066129_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066129/17175_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066129/17175_6#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 142363478;8232 ERS708122 ERX1146279 GENOMIC 14427531 617677750 2015-10-13 SC_RUN_17175_6#27 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066129/17175_6#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066129/17175_6#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#27 ERR1066080 SC_EXP_17175_5#68 463 0582f694b31bc36cb0057235fa5654e5;c010175395f57ca160798f5319cc989d 1313 889056d3e0f31ede2003d9bed1a07689;37e1fd104818545848fd5c5dbfd8df0b SAMEA3353673 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066080/ERR1066080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066080/ERR1066080_2.fastq.gz 4831074 WGS GPS_ZA_carriage_SP1680-sc-2278275 RANDOM 91079459;92217391 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066080/ERR1066080_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066080/ERR1066080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066080/17175_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066080/17175_5#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066080/ERR1066080_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066080/ERR1066080_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066080/17175_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066080/17175_5#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 140131755;7979 ERS708028 ERX1146230 GENOMIC 14423458 603884250 2015-10-13 SC_RUN_17175_5#68 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066080/17175_5#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066080/17175_5#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#68 ERR1066107 SC_EXP_17175_6#5 449 96a12e1027c3d95e5047b1a1eb4c9af8;0e2f5109ea8f3d65be0336f2a4d9410a 1313 c5874f5ed9ad223c70853a114e8fae01;6fddfb9ffa98b8ff666c94611aba47b4 SAMEA3353729 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066107/ERR1066107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066107/ERR1066107_2.fastq.gz 6370518 WGS GPS_ZA_carriage_SP1708-sc-2278331 RANDOM 113152439;120727610 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066107/ERR1066107_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1066107/ERR1066107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066107/17175_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066107/17175_6#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066107/ERR1066107_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1066107/ERR1066107_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066107/17175_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066107/17175_6#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 181952161;10361 ERS708084 ERX1146257 GENOMIC 14427552 796314750 2015-10-13 SC_RUN_17175_6#5 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066107/17175_6#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066107/17175_6#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#5 ERR1066064 SC_EXP_17175_5#52 463 b75d0afe5dbfb9f3506857813f6f2eb7;f53981d67e3a5328f85b41a70a7e2a8d 1313 602f09c8c49406edce8309ac5e1d9263;6dbb08e260bec668dd86972de89f0ad1 SAMEA3353642 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066064/ERR1066064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066064/ERR1066064_2.fastq.gz 3120270 WGS GPS_ZA_carriage_SP1664-sc-2278244 RANDOM 59586273;60360818 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066064/ERR1066064_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1066064/ERR1066064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066064/17175_5#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066064/17175_5#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066064/ERR1066064_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1066064/ERR1066064_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066064/17175_5#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066064/17175_5#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89310664;5161 ERS707997 ERX1146214 GENOMIC 14423456 390033750 2015-10-13 SC_RUN_17175_5#52 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066064/17175_5#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066064/17175_5#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#52 ERR1066028 SC_EXP_17175_5#16 463 7426004105e1aea6d030afbe88044cbb;742932fb2ae9f00b35085b01fb24cf0b 1313 f8e67fa3f74c62a6bafec20002a99bc9;e44e374e0f13e3f710e0838e999e5835 SAMEA3353566 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066028/ERR1066028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066028/ERR1066028_2.fastq.gz 5357614 WGS GPS_ZA_carriage_SP1626-sc-2278168 RANDOM 102240902;102714426 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066028/ERR1066028_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066028/ERR1066028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066028/17175_5#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066028/17175_5#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066028/ERR1066028_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066028/ERR1066028_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066028/17175_5#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066028/17175_5#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 157698044;8858 ERS707921 ERX1146178 GENOMIC 14423475 669701750 2015-10-13 SC_RUN_17175_5#16 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066028/17175_5#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066028/17175_5#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#16 ERR1065930 SC_EXP_17175_4#11 467 bfa8c2405ab8919bd2ee8c505b681d09;d74191dfef2a10c25de63d06387b8b27 1313 c4c4240ceb5e3f95fd54651cd12682b4;1532c9e2b6b1fa84592a2e0c62065e74 SAMEA3353373 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065930/ERR1065930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065930/ERR1065930_2.fastq.gz 5057778 WGS GPS_ZA_carriage_SP1436-sc-2277973 RANDOM 91273030;95972108 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065930/ERR1065930_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065930/ERR1065930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065930/17175_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065930/17175_4#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065930/ERR1065930_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065930/ERR1065930_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065930/17175_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065930/17175_4#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 143609619;8382 ERS707728 ERX1146080 GENOMIC 14436322 632222250 2015-10-13 SC_RUN_17175_4#11 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065930/17175_4#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065930/17175_4#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#11 ERR1065814 SC_EXP_17150_5#81 460 366a27bca3b004362d9352b6f7564c48;6aff57e589431e9c7748502b135da5a0 1313 04146d1e9ae6aec5db19f3f7d72344c1;eaf3cc0cd3ed9665cf91e4b2467b9f52 SAMEA3353875 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065814/ERR1065814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065814/ERR1065814_2.fastq.gz 5939800 WGS GPS_ZA_carriage_SP1857-sc-2278479 RANDOM 115438802;110893457 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065814/ERR1065814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065814/ERR1065814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065814/17150_5#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065814/17150_5#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065814/ERR1065814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065814/ERR1065814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065814/17150_5#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065814/17150_5#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177459452;9922 ERS708230 ERX1145964 GENOMIC 14423206 742475000 2015-10-13 SC_RUN_17150_5#81 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065814/17150_5#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065814/17150_5#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#81 ERR1065702 SC_EXP_17150_4#63 458 986fe932645f8b91e53bd0c3ca3725eb;2edb342b2a74b69abb60327bdeea32f1 1313 91abf6d36bb044ce1fe87b8d9428a5ae;5d96d61a0fce7087fe3704db2622fcbe SAMEA3353655 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065702/ERR1065702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065702/ERR1065702_2.fastq.gz 5630614 WGS GPS_ZA_carriage_SP1579-sc-2278257 RANDOM 105508931;106189308 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065702/ERR1065702_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065702/ERR1065702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065702/17150_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065702/17150_4#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065702/ERR1065702_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065702/ERR1065702_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065702/17150_4#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065702/17150_4#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 164493927;9405 ERS708010 ERX1145852 GENOMIC 14436473 703826750 2015-10-13 SC_RUN_17150_4#63 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065702/17150_4#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065702/17150_4#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#63 ERR1065783 SC_EXP_17150_5#50 460 58f9a495ce0fbdb8af8adce779c2e00a;6e19de3a828139655c4765655f4a3b93 1313 6335d6da17fbc42cd59fc249b00dc8d8;c13780fe6ef1fddf3e6c5d4a745d7d42 SAMEA3353815 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065783/ERR1065783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065783/ERR1065783_2.fastq.gz 5054940 WGS GPS_ZA_carriage_SP1835-sc-2278419 RANDOM 97146073;95599718 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065783/ERR1065783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065783/ERR1065783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065783/17150_5#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065783/17150_5#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065783/ERR1065783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065783/ERR1065783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065783/17150_5#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065783/17150_5#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 148554906;8408 ERS708170 ERX1145933 GENOMIC 14423214 631867500 2015-10-13 SC_RUN_17150_5#50 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065783/17150_5#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065783/17150_5#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#50 ERR1065536 SC_EXP_17138_4#53 472 dfe931380b3cdef9bb526dba56dea2f4;2613465db32fb66e12be320ce2541458 1313 d2fb6e83ccb371e9a489e10e9bed11da;12b01ab2f957021df5be0c9dd68554bb SAMEA3354335 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065536/ERR1065536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065536/ERR1065536_2.fastq.gz 4185816 WGS GPS_ZA_carriage_SP2022-sc-2278978 RANDOM 85737754;84902173 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065536/ERR1065536_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065536/ERR1065536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065536/17138_4#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065536/17138_4#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065536/ERR1065536_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065536/ERR1065536_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065536/17138_4#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065536/17138_4#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 130004766;7001 ERS708690 ERX1145686 GENOMIC 14468607 523227000 2015-10-13 SC_RUN_17138_4#53 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065536/17138_4#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065536/17138_4#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#53 ERR1065431 SC_EXP_17138_3#41 472 9657e0af2dddfe9b4725a878d7159297;fc4ad8042657cde5e9d52a2a913b18e9 1313 b5b0d2baf51691742339501dfd749cc2;249d5ed5ab9ef280cb877b7af3c9fe3d SAMEA3354166 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065431/ERR1065431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065431/ERR1065431_2.fastq.gz 5176976 WGS GPS_ZA_carriage_SP1934-sc-2278774 RANDOM 105385166;103669738 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065431/ERR1065431_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065431/ERR1065431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065431/17138_3#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065431/17138_3#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065431/ERR1065431_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065431/ERR1065431_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065431/17138_3#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065431/17138_3#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 159189727;8588 ERS708521 ERX1145581 GENOMIC 14438258 647122000 2015-10-13 SC_RUN_17138_3#41 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065431/17138_3#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065431/17138_3#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#41 ERR1065389 SC_EXP_17059_8#93 447 373ba686d70c89394d1a3469ae1d4511;44fe1d5fffc06f136fb529e450754fc2 1313 cd0ee94671385e55d0b4e306de26b2a4;027a7e0421ea6a4fc5f1a823bc5d122e SAMEA3353537 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065389/ERR1065389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065389/ERR1065389_2.fastq.gz 5566716 WGS GPS_ZA_carriage_SP1421-sc-2278138 RANDOM 99459328;103125066 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065389/ERR1065389_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/009/ERR1065389/ERR1065389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065389/17059_8#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065389/17059_8#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065389/ERR1065389_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/009/ERR1065389/ERR1065389_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065389/17059_8#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065389/17059_8#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 166633325;9178 ERS707892 ERX1145539 GENOMIC 14406242 695839500 2015-10-13 SC_RUN_17059_8#93 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065389/17059_8#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065389/17059_8#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#93 ERR1065488 SC_EXP_17138_4#5 472 6dd7d166ac07396f0af30e29f63a2488;68a40b86583aacce2a4949af49d0321a 1313 4973da3b0ceb3f316c17e7b32617a24b;32ba0280cde4857f518b27d35e723de7 SAMEA3354282 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065488/ERR1065488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065488/ERR1065488_2.fastq.gz 6114806 WGS GPS_ZA_carriage_SP1981-sc-2278890 RANDOM 115456044;120159764 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065488/ERR1065488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065488/ERR1065488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065488/17138_4#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065488/17138_4#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065488/ERR1065488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065488/ERR1065488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065488/17138_4#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065488/17138_4#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 185455629;10082 ERS708637 ERX1145638 GENOMIC 14468601 764350750 2015-10-13 SC_RUN_17138_4#5 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065488/17138_4#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065488/17138_4#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#5 ERR1065331 SC_EXP_17059_8#35 447 25b7ac2644823e1e79dad3ec93b1d798;7bccbce2499f44a25e86dbc6c67a90b9 1313 fc02dd2194508c88a38d10d6f3027e3c;18bed8af1dd59ee7dcf4e760c71b4aa2 SAMEA3353419 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065331/ERR1065331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065331/ERR1065331_2.fastq.gz 5179888 WGS GPS_ZA_carriage_SP1363-sc-2278019 RANDOM 89887919;93811139 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065331/ERR1065331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065331/ERR1065331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065331/17059_8#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065331/17059_8#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065331/ERR1065331_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065331/ERR1065331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065331/17059_8#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065331/17059_8#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 150545387;8531 ERS707774 ERX1145481 GENOMIC 14406211 647486000 2015-10-13 SC_RUN_17059_8#35 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065331/17059_8#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065331/17059_8#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#35 ERR1065274 SC_EXP_17059_7#70 465 c70129f0fb9b66d772a46a9f3832f163;6640c1484dffd9209ba2f97f933325d0 1313 84ab42f81dfb3489298be750460a13bf;9300e5bad5bb54a68f44974eb559db7f SAMEA3353302 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065274/ERR1065274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065274/ERR1065274_2.fastq.gz 4302418 WGS GPS_ZA_carriage_SP1304-sc-2277900 RANDOM 82270510;85471005 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065274/ERR1065274_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/004/ERR1065274/ERR1065274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065274/17059_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065274/17059_7#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065274/ERR1065274_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/004/ERR1065274/ERR1065274_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065274/17059_7#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065274/17059_7#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 137172749;7119 ERS707657 ERX1145424 GENOMIC 14406350 537802250 2015-10-13 SC_RUN_17059_7#70 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065274/17059_7#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065274/17059_7#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#70 ERR1065122 SC_EXP_17059_6#11 444 040c42b6375d6e1005e4bf8fed66aa57;a41b40895523c5dcf335395273125b39 1313 5d33d0cc1fb554d40a9385a8618947ec;040756ae99f78f0a6855db8bd9070363 SAMEA3353182 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065122/ERR1065122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065122/ERR1065122_2.fastq.gz 4821704 WGS GPS_ZA_carriage_SP1151-sc-2277780 RANDOM 90536110;93758786 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065122/ERR1065122_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065122/ERR1065122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065122/17059_6#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065122/17059_6#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065122/ERR1065122_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065122/ERR1065122_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065122/17059_6#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065122/17059_6#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 151570783;8040 ERS707537 ERX1145272 GENOMIC 14397918 602713000 2015-10-13 SC_RUN_17059_6#11 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065122/17059_6#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065122/17059_6#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#11 ERR980210 SC_EXP_16288_7#10 201 f08893faccd43c2f24d10acc3a4958ea;cac0d301d5b464924b62ba6907b68963 1313 80df7388f2b37ec36426dd032697fa2b;3b1d4fd48c22dfc82146d7e7ac04cb94 SAMEA3232685 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980210/ERR980210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980210/ERR980210_2.fastq.gz 5017288 WGS GPS_NP_0012-sc-2205604 RANDOM 168341317;164767922 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980210/ERR980210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980210/ERR980210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980210/16288_7#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980210/16288_7#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980210/ERR980210_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980210/ERR980210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980210/16288_7#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980210/16288_7#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 270975610;8032 ERS653896 ERX1057082 GENOMIC 13304016 501728800 2015-08-12 SC_RUN_16288_7#10 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980210/16288_7#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980210/16288_7#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#10 ERR980313 SC_EXP_16288_8#40 202 c51a6772ba6fb28c045e2123041928b5;7c91481e0cf5794a299a6a6716fa0460 1313 269b92bdfdf992279033f45a2676f0ac;5200b15f25b221eab03c9243ccd2e3f7 SAMEA3232806 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980313/ERR980313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980313/ERR980313_2.fastq.gz 4827402 WGS GPS_NP_1362-sc-2205718 RANDOM 165847757;161617812 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980313/ERR980313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980313/ERR980313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980313/16288_8#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980313/16288_8#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980313/ERR980313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980313/ERR980313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980313/16288_8#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980313/16288_8#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 264533354;7654 ERS654017 ERX1057185 GENOMIC 13301837 482740200 2015-08-12 SC_RUN_16288_8#40 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980313/16288_8#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980313/16288_8#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#40 ERR979996 SC_EXP_16288_4#40 217 96f00f3987885e1cc4bd3814ad610107;584bdc2ecabbf37c25d4deb486a04b42 1313 f8e7741d0f2e3689600137a2a534d454;197cf0e9c444670a0f86a5afe86981f4 SAMEA3232466 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979996/ERR979996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979996/ERR979996_2.fastq.gz 5145092 WGS GPS_NP_2437-sc-2205384 RANDOM 181327139;176275035 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979996/ERR979996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979996/ERR979996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979996/16288_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979996/16288_4#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979996/ERR979996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979996/ERR979996_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979996/16288_4#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979996/16288_4#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291601112;8299 ERS653677 ERX1056868 GENOMIC 13296321 514509200 2015-08-12 SC_RUN_16288_4#40 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979996/16288_4#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979996/16288_4#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#40 ERR925345 SC_EXP_15995_2#135 219 ef93bfc5db11b1f58c7ea5272cf3624b;ecfd9b94239eb0ef65d62fb1825664d6 1313 4e809df52f98ab5507f1ee5bc669f48d;1c937a458f1991487f35a654ad132db6 SAMEA3209065 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925345/ERR925345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925345/ERR925345_2.fastq.gz 1855378 WGS GPS_ZA_carriage_SP1122-sc-2205203 RANDOM 57491507;60057766 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925345/ERR925345_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925345/ERR925345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925345/15995_2#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925345/15995_2#135.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925345/ERR925345_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925345/ERR925345_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925345/15995_2#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925345/15995_2#135.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 95645502;3172 ERS640167 ERX1004620 GENOMIC 13301287 185537800 2015-06-23 SC_RUN_15995_2#135 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925345/15995_2#135.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925345/15995_2#135.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#135 ERR913503 SC_EXP_15874_1#23 217 7e779a50ba2be69c4c27cf61bfe129f7;9f13f5f8678c57616df0492764aa39e7 1313 a55e886db9f6acc221deb2e0d7f10dfc;68f5d7e99d3fdbd28a1727ae4dab9d0b SAMEA3207028 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913503/ERR913503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913503/ERR913503_2.fastq.gz 4799228 WGS GPS_ZA_carriage_SP455-sc-2191965 RANDOM 139485572;148251470 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913503/ERR913503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913503/ERR913503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913503/15874_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913503/15874_1#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913503/ERR913503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913503/ERR913503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913503/15874_1#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913503/15874_1#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230306086;7715 ERS639038 ERX992627 GENOMIC 13242123 479922800 2015-06-17 SC_RUN_15874_1#23 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913503/15874_1#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913503/15874_1#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#23 ERR870032 SC_EXP_15531_4#30 207 54a17e1908c9dc041c5c5a3a1d9d6010;e5a4534f365b574de047caec546efafa 1313 9810489f757bba63317a9cd7bcc31f9a;7528a5b502de6cc879cbffdbf7cb7b82 SAMEA3171629 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870032/ERR870032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870032/ERR870032_2.fastq.gz 4799766 WGS GPS_MW_153300-sc-2140023 RANDOM 184248280;174258415 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870032/ERR870032_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870032/ERR870032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870032/15531_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870032/15531_4#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870032/ERR870032_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870032/ERR870032_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870032/15531_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870032/15531_4#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298218509;7813 ERS626020 ERX949633 GENOMIC 12882844 479976600 2015-05-06 SC_RUN_15531_4#30 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870032/15531_4#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870032/15531_4#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#30 ERR909236 SC_EXP_15841_5#7 223 952f9fc79bc14091235a24a50b8c9e29;fd96578cddfcc5cfaed62483c97369ff 1313 9ca60e655619c76bc21189177bee46ea;89ee25fbebde0a0fdd8f831b49daec93 SAMEA3206917 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909236/ERR909236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909236/ERR909236_2.fastq.gz 5743730 WGS GPS_ZA_carriage_SP358-sc-2191853 RANDOM 179572493;185214145 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909236/ERR909236_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909236/ERR909236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909236/15841_5#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909236/15841_5#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909236/ERR909236_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909236/ERR909236_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909236/15841_5#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909236/15841_5#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 295736543;9262 ERS638927 ERX988491 GENOMIC 13275995 574373000 2015-06-09 SC_RUN_15841_5#7 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909236/15841_5#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909236/15841_5#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#7 ERR925147 SC_EXP_15995_1#123 231 e5a39e4941d4cf0a5b3a0b8ea9284b26;86bac4257937c832d71d3cdc14add375 1313 5ce721f1c592eeeea52502ffd4deaaea;dad583ad3f34fe757f43a93cbd18f6a3 SAMEA3208863 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925147/ERR925147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925147/ERR925147_2.fastq.gz 1913758 WGS GPS_ZA_carriage_SP883-sc-2204999 RANDOM 57819510;60397169 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925147/ERR925147_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925147/ERR925147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925147/15995_1#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925147/15995_1#123.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925147/ERR925147_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925147/ERR925147_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925147/15995_1#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925147/15995_1#123.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96214899;3258 ERS639965 ERX1004422 GENOMIC 13241092 191375800 2015-06-23 SC_RUN_15995_1#123 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925147/15995_1#123.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925147/15995_1#123.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#123 ERR862387 SC_EXP_15378_3#34 191 19aeae0774bc37ed6a452ed3158c8282;ce242a3b95dc22da55213dcffd435cd0 1313 4b729d104beb1bd76959bc6f0bc04fb7;831820ae9ae78087b4485def8ab399a9 SAMEA3171069 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862387/ERR862387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862387/ERR862387_2.fastq.gz 5837782 WGS GPS_MW_6240-sc-2139631 RANDOM 200237377;204887917 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862387/ERR862387_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862387/ERR862387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862387/15378_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862387/15378_3#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862387/ERR862387_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862387/ERR862387_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862387/15378_3#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862387/15378_3#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 331410309;9518 ERS625460 ERX942037 GENOMIC 12815402 583778200 2015-04-21 SC_RUN_15378_3#34 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862387/15378_3#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862387/15378_3#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#34 ERR570425 SC_EXP_12837_5#24 238 a7131f40e14a433da1c468db18314576;608db19f04ba0d61182fedddb46948bb 1313 906d06f8f4c4a8ac2ffaee2d8e693bcf;796bb190245978134824ef2be88ffca8 SAMEA2434788 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570425/ERR570425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570425/ERR570425_2.fastq.gz 6311000 WGS SA_GPS_SP683-sc-1895854 RANDOM 210658224;215827294 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570425/ERR570425_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570425/ERR570425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570425/12837_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570425/12837_5#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570425/ERR570425_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570425/ERR570425_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570425/12837_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570425/12837_5#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 354527756;10388 ERS428965 ERX529414 GENOMIC 9993300 631100000 2014-07-28 SC_RUN_12837_5#24 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570425/12837_5#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570425/12837_5#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#24 ERR273531 SC_EXP_6731_2#4 215 4229287e519b62218596f06d4cdddf9d 1313 09215b0cbf24ea77cd3a5ca0b3fe892e;98536ddc50bf5836c6ea0dbf09a5d2ac SAMEA1024611 2013-05-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273531/ERR273531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273531/ERR273531_2.fastq.gz 1224422 WGS SMRU1012-sc-2011-01-27-1061225 RANDOM 56079030;56934709 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273531/ERR273531_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR273/ERR273531/ERR273531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273531/6731_2#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273531/ERR273531_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR273/ERR273531/ERR273531_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR273/ERR273531/6731_2#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 161187393 ERS020522 ERX247807 GENOMIC 3246187 183663300 2013-05-13 SC_RUN_6731_2#4 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR273/ERR273531/6731_2#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA212571 Streptococcus pneumoniae Streptococcus pneumoniae ERR064231 SC_EXP_6949_4#21 261 51fb0afd42bf6bc31e894f57cffa9a85 1313 b23cc147577da3b3de1031a3450e5200;95325f3f0bb66eb7eb669e872e51eaac SAMEA1028900 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064231/ERR064231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064231/ERR064231_2.fastq.gz 7397446 WGS SMRU2493-sc-2011-01-27-1062706 RANDOM 379642509;385221383 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064231/ERR064231_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064231/ERR064231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064231/6949_4#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064231/ERR064231_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064231/ERR064231_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064231/6949_4#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 954014105 ERS022003 ERX042204 GENOMIC 3660782 1109616900 2012-03-19 SC_RUN_6949_4#21 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064231/6949_4#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048186 SC_EXP_6631_7#5 213 5c2f419d53d6f957b5dd234eef745c3f 1313 eaf8fb0b82f5c1de1d68606f3e8535e4;4219eba1a005e67d22235aacc2b042a9 SAMEA1024160 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048186/ERR048186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048186/ERR048186_2.fastq.gz 4151854 WGS SMRU509-sc-2011-01-27-1060698 RANDOM 231465310;235460937 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048186/ERR048186_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048186/ERR048186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048186/6631_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048186/ERR048186_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048186/ERR048186_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048186/6631_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 586534407 ERS019667 ERX025249 GENOMIC 3037828 622778100 2011-10-11 SC_RUN_6631_7#5 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048186/6631_7#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048017 SC_EXP_6630_4#4 226 0bf8cd305fa8e49e89a7491a354521ba 1313 bd676d0621e17bbe9bc609b6f298ba86;9ca4c237ac1e2d661baa91df5ae4d271 SAMEA1023664 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048017/ERR048017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048017/ERR048017_2.fastq.gz 2457975 WGS SMRU388-sc-2011-01-27-1060577 RANDOM 149726913;148104668 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048017/ERR048017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048017/ERR048017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048017/6630_4#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048017/ERR048017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048017/ERR048017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048017/6630_4#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 380509072 ERS019546 ERX025080 GENOMIC 2952175 368696250 2011-10-11 SC_RUN_6630_4#4 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048017/6630_4#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054523 SC_EXP_6755_1#15 221 cb3362301ad92dac4585a6a9a62d934d 1313 efcd10ce41bdf8d90f233dcce41a35c3;e338b94077e8ede66da7e8c2986212db SAMEA1025067 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054523/ERR054523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054523/ERR054523_2.fastq.gz 2757585 WGS SMRU783-sc-2011-01-27-1060972 RANDOM 140335065;140869429 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054523/ERR054523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054523/ERR054523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054523/6755_1#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054523/ERR054523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054523/ERR054523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054523/6755_1#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 359499656 ERS020293 ERX031569 GENOMIC 3152292 413637750 2011-11-15 SC_RUN_6755_1#15 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054523/6755_1#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054250 SC_EXP_6710_7#5 233 8622a0df04b6bdd710b2c6511fa63e4b 1313 f3b08fc90f80b587423ab5a95761abad;58c75d8813596953bb565d5248a22ae4 SAMEA1025428 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054250/ERR054250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054250/ERR054250_2.fastq.gz 6324440 WGS SMRU1373-sc-2011-01-27-1061586 RANDOM 357743917;373286357 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054250/ERR054250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054250/ERR054250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054250/6710_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054250/ERR054250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054250/ERR054250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054250/6710_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 924581950 ERS020883 ERX031296 GENOMIC 3348831 948666000 2011-11-15 SC_RUN_6710_7#5 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054250/6710_7#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR066265 SC_EXP_6983_4#90 238 4565f0d580354d920690e47f674e682a 1313 252b6413991cbaf7b99ba74d8d4dd3c2;7b768daadbbb1d2aca71a4120f6a10bb SAMEA1026238 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066265/ERR066265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066265/ERR066265_2.fastq.gz 2229969 WGS SMRU2298-sc-2011-01-27-1062511 RANDOM 161144729;163317114 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066265/ERR066265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066265/ERR066265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066265/6983_4#90.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066265/ERR066265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066265/ERR066265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066265/6983_4#90.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 403017651 ERS021807 ERX044128 GENOMIC 3594918 334495350 2012-01-10 SC_RUN_6983_4#90 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066265/6983_4#90.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066214 SC_EXP_6983_2#15 239 e097110f71986c9d2cb9362f9c1c0ab8 1313 8344b50d674d2e7fe53b12e78c6cd03f;22f7ac54f461004df6de76f99f883a88 SAMEA1025789 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066214/ERR066214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066214/ERR066214_2.fastq.gz 2908561 WGS SMRU2223-sc-2011-01-27-1062436 RANDOM 204500802;204205532 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066214/ERR066214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066214/ERR066214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066214/6983_2#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066214/ERR066214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066214/ERR066214_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066214/6983_2#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 507398586 ERS021732 ERX044077 GENOMIC 3593287 436284150 2012-01-10 SC_RUN_6983_2#15 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066214/6983_2#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066359 SC_EXP_6983_8#88 237 bd1e547c5ce077bb20631ebe87b1f1ac 1313 0adf5498e96d9e79768afc4bec29dbd9;c277d01bed3b4a7472f0a685f05abdca SAMEA1028604 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066359/ERR066359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066359/ERR066359_2.fastq.gz 3361902 WGS SMRU2392-sc-2011-01-27-1062605 RANDOM 237188128;240580075 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066359/ERR066359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066359/ERR066359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066359/6983_8#88.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066359/ERR066359_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066359/ERR066359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066359/6983_8#88.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 591568912 ERS021901 ERX044222 GENOMIC 3596170 504285300 2012-03-19 SC_RUN_6983_8#88 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066359/6983_8#88.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR056765 SC_EXP_6805_2#11 234 1fd5b6a4b6dcbc445aecc53061c73b2e 1313 f88c52d6eabf7244904c72f762e882c0;143cd61b9e3fa648fe28e62cb1637eab SAMEA1025572 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056765/ERR056765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056765/ERR056765_2.fastq.gz 5274914 WGS SMRU1427-sc-2011-01-27-1061640 RANDOM 281400766;294072173 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056765/ERR056765_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056765/ERR056765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056765/6805_2#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056765/ERR056765_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056765/ERR056765_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056765/6805_2#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 715092225 ERS020937 ERX034609 GENOMIC 3441185 791237100 2011-11-29 SC_RUN_6805_2#11 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056765/6805_2#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056734 SC_EXP_6805_1#4 215 413035e53fc876c05d4bcb67cc94a435 1313 2dbc36b86b642840f592dd5cd39fb9a7;5cfca9bdf6a18670cea179e44920e41d SAMEA1024611 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056734/ERR056734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056734/ERR056734_2.fastq.gz 3404958 WGS SMRU1012-sc-2011-01-27-1061225 RANDOM 167667410;176189910 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056734/ERR056734_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056734/ERR056734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056734/6805_1#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056734/ERR056734_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056734/ERR056734_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056734/6805_1#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 429463200 ERS020522 ERX034578 GENOMIC 3246187 510743700 2011-11-29 SC_RUN_6805_1#4 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056734/6805_1#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR1947390 SC_EXP_21903_8#236 440 53cfcf05ca3f4c430f7cd7b9b3c2cff6;ccdfdc39a1814fa157e5337867e76425 1313 8f60d344fc7bc4beb94af3bbf4a0bba4;c10e9ae8772b662cf0fcf2a86298cbe9 SAMEA4561418 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947390/ERR1947390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947390/ERR1947390_2.fastq.gz 1883836 WGS 2654aa30-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 49983955;72629947 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947390/ERR1947390_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947390/ERR1947390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947390/21903_8#236.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947390/21903_8#236.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947390/ERR1947390_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947390/ERR1947390_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947390/21903_8#236.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947390/21903_8#236.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 91076850;3173 ERS1460597 ERX2013177 GENOMIC 18453112 284459236 2017-04-25 SC_RUN_21903_8#236 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947390/21903_8#236.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947390/21903_8#236.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR2305121 SC_EXP_22695_3#80 474 839549afad3e8b23af8b7aaa32fbf0d2;2a0b38a8028245508b2f01aa72738673 1313 ad3acf6c5967daa9ed22fc4d33254c39;51c8eb3d31a5c38b8a9d76fb0bbd636c SAMEA104034669 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305121/ERR2305121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305121/ERR2305121_2.fastq.gz 1892404 WGS e7638920-13c3-11e7-942b-3c4a9275d6c8 RANDOM 52036933;72161711 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305121/ERR2305121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305121/ERR2305121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305121/22695_3#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305121/22695_3#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305121/ERR2305121_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305121/ERR2305121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305121/22695_3#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305121/22695_3#80.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92479052;3247 ERS1698562 ERX2356431 GENOMIC DN477140L:H10 285753004 2018-02-16 SC_RUN_22695_3#80 119 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305121/22695_3#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305121/22695_3#80.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808634 ERR1202451 SC_EXP_17966_5#1 464 fbc9cfc5907d149637c3b3856c06cc6a;0063be9da16abf0b6f54420d296ab82e 1313 74086a3595d1d4a082feed8c7da0f6b5;7b9593167078e3a87431724a7536a62c SAMEA3390011 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202451/ERR1202451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202451/ERR1202451_2.fastq.gz 2027972 WGS GPS_MW_BQN1TJ-sc-2296256 RANDOM 36434923;35980721 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202451/ERR1202451_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202451/ERR1202451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202451/17966_5#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202451/17966_5#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202451/ERR1202451_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202451/ERR1202451_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202451/17966_5#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202451/17966_5#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 50237027;3424 ERS726114 ERX1274693 GENOMIC 15025455 253496500 2016-01-12 SC_RUN_17966_5#1 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202451/17966_5#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202451/17966_5#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#1 ERR2305095 SC_EXP_22695_3#54 417 83e8ead3efbbcf12c631ec630be6ae25;5784e3dbdc2e39d41fce8da3753a026d 1313 43c496caa60132fe03020ae41acf7254;2326c7bbc6d3ebf34dc58d33c2427b63 SAMEA104034643 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305095/ERR2305095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305095/ERR2305095_2.fastq.gz 2325526 WGS e68bedd0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 61416900;82743166 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305095/ERR2305095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305095/ERR2305095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305095/22695_3#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305095/22695_3#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305095/ERR2305095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305095/ERR2305095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305095/22695_3#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305095/22695_3#54.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104864955;3955 ERS1698536 ERX2356405 GENOMIC DN477140L:F7 351154426 2018-02-16 SC_RUN_22695_3#54 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305095/22695_3#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305095/22695_3#54.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808608 ERR1202268 SC_EXP_17870_8#8 447 1697810865a39e196b5e5259da31b541;9acf0356bf591d090fbcda9ad2210f55 1313 ceae6c35cfbfd3de9d72363d3a00ca23;d7e0d952e6f12d8c454ff47043f6f389 SAMEA3389821 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202268/ERR1202268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202268/ERR1202268_2.fastq.gz 2664058 WGS GPS_MW_C13306-sc-2296065 RANDOM 55011814;56247778 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202268/ERR1202268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202268/ERR1202268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202268/17870_8#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202268/17870_8#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202268/ERR1202268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202268/ERR1202268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202268/17870_8#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202268/17870_8#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 82190178;4232 ERS725924 ERX1274510 GENOMIC 14977756 333007250 2016-01-12 SC_RUN_17870_8#8 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202268/17870_8#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202268/17870_8#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#8 ERR1065176 SC_EXP_17059_6#65 444 87f9c200eebc88b5e1aedbb49626747e;a083dfd1ae4469527df9587786aeb228 1313 857b9c98f1bc07707f14a9be7eb790e8;c1c750fa1373a6ea59f3970616247f13 SAMEA3353286 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065176/ERR1065176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065176/ERR1065176_2.fastq.gz 5669550 WGS GPS_ZA_carriage_SP1205-sc-2277884 RANDOM 107286135;108000315 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065176/ERR1065176_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065176/ERR1065176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065176/17059_6#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065176/17059_6#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065176/ERR1065176_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065176/ERR1065176_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065176/17059_6#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065176/17059_6#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177339983;9316 ERS707641 ERX1145326 GENOMIC 14397901 708693750 2015-10-13 SC_RUN_17059_6#65 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065176/17059_6#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065176/17059_6#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#65 ERR1191853 SC_EXP_17794_7#31 458 2a6b264b4b8eb3fad854020f277e6a5b;6297797dff590da733b245bd7b50be95 1313 76f3dedff0dd7e1ec3b285b92c5cd55a;064d1495a8b88e1b0d4a99f3674e6dc3 SAMEA3381610 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191853/ERR1191853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191853/ERR1191853_2.fastq.gz 3425006 WGS GPS_GM_2121-sc-2279490 RANDOM 67422904;68648844 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191853/ERR1191853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191853/ERR1191853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191853/17794_7#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191853/17794_7#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191853/ERR1191853_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191853/ERR1191853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191853/17794_7#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191853/17794_7#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 104536981;5624 ERS719869 ERX1265237 GENOMIC 14934806 428125750 2015-12-17 SC_RUN_17794_7#31 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191853/17794_7#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191853/17794_7#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#31 ERR1065161 SC_EXP_17059_6#50 444 4d318835256aa427d0df4c2a59d5776d;c922430645c12e2c0c760a239b2d0621 1313 1b617a2c1e2ac9a47a81fe6f7122d4c5;ff8a99b27cbc4991be033adcbb99b6d9 SAMEA3353259 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065161/ERR1065161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065161/ERR1065161_2.fastq.gz 4942242 WGS GPS_ZA_carriage_SP1190-sc-2277857 RANDOM 95265085;98026354 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065161/ERR1065161_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065161/ERR1065161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065161/17059_6#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065161/17059_6#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065161/ERR1065161_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065161/ERR1065161_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065161/17059_6#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065161/17059_6#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 156918830;8046 ERS707614 ERX1145311 GENOMIC 14397911 617780250 2015-10-13 SC_RUN_17059_6#50 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065161/17059_6#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065161/17059_6#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#50 ERR1065836 SC_EXP_17150_6#10 464 29cf7627292ddc4975655ea29d8b6242;08f48785d62d0d3efe7a092f4a668770 1313 2b1570dbe5980f2fb528dcbdf76a81b1;609f9b843f11fc2e8adb46bb6ea63f23 SAMEA3354101 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065836/ERR1065836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065836/ERR1065836_2.fastq.gz 4227302 WGS GPS_ZA_2984-sc-2278707 RANDOM 82637781;79360533 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065836/ERR1065836_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1065836/ERR1065836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065836/17150_6#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065836/17150_6#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065836/ERR1065836_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1065836/ERR1065836_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065836/17150_6#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065836/17150_6#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 121837166;6902 ERS708456 ERX1145986 GENOMIC 14438169 528412750 2015-10-13 SC_RUN_17150_6#10 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065836/17150_6#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065836/17150_6#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#10 ERR997529 SC_EXP_16399_5#68 228 a2235b2f22aa0690a8a0a461ecc4d7d2;e571c0d917a59e80672dac569ca383c4 1313 3e7b9416a0f328b23496e17c4837db9f;f0b842cc98243b8733976d5ee15910ff SAMEA3309561 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997529/ERR997529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997529/ERR997529_2.fastq.gz 5378032 WGS GPS_GM_1580-sc-2206363 RANDOM 169339900;175879501 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997529/ERR997529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997529/ERR997529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997529/16399_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997529/16399_5#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997529/ERR997529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997529/ERR997529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997529/16399_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997529/16399_5#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279389697;8701 ERS686023 ERX1076565 GENOMIC 13835508 537803200 2015-09-04 SC_RUN_16399_5#68 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997529/16399_5#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997529/16399_5#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#68 ERR980277 SC_EXP_16288_8#4 202 d6f33e9c9edbfa9bd62389de7e45adef;569b7b707cf006cfcbd391ffbce695fa 1313 02093a2ae1fe69420af4eb6b0f9ebf51;078f838d2fa4d9941ec231cfb333d0ea SAMEA3232770 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980277/ERR980277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980277/ERR980277_2.fastq.gz 5944146 WGS GPS_NP_1263-sc-2205682 RANDOM 199462807;194010573 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980277/ERR980277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980277/ERR980277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980277/16288_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980277/16288_8#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980277/ERR980277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980277/ERR980277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980277/16288_8#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980277/16288_8#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 319118338;9681 ERS653981 ERX1057149 GENOMIC 13301785 594414600 2015-08-12 SC_RUN_16288_8#4 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980277/16288_8#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980277/16288_8#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#4 ERR925126 SC_EXP_15995_1#102 231 52657c8255e378a2be6c9403f50df5f9;13318dbfc7ffa37c3d8e95d19ae7fbc1 1313 46be641ee52e5a764e0de754a1064175;d561ce969f83a7f3c7026a09fb26bbb3 SAMEA3208842 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925126/ERR925126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925126/ERR925126_2.fastq.gz 2034192 WGS GPS_ZA_carriage_SP916-sc-2204978 RANDOM 61039717;64050125 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925126/ERR925126_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925126/ERR925126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925126/15995_1#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925126/15995_1#102.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925126/ERR925126_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925126/ERR925126_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925126/15995_1#102.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925126/15995_1#102.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 101931980;3493 ERS639944 ERX1004401 GENOMIC 13241125 203419200 2015-06-23 SC_RUN_15995_1#102 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925126/15995_1#102.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925126/15995_1#102.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#102 ERR925314 SC_EXP_15995_2#104 219 541e7aa50e83f529c8fb53936a604f9d;e905cf28ebaeb907111734231e3a9be3 1313 2894cccedde7658d153425f186eb4d90;53303fe5adabb535aa38f6d677d87e87 SAMEA3209034 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925314/ERR925314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925314/ERR925314_2.fastq.gz 2269806 WGS GPS_ZA_carriage_SP1130-sc-2205172 RANDOM 70188396;72968429 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925314/ERR925314_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925314/ERR925314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925314/15995_2#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925314/15995_2#104.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925314/ERR925314_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925314/ERR925314_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925314/15995_2#104.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925314/15995_2#104.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 117353777;3813 ERS640136 ERX1004589 GENOMIC 13301295 226980600 2015-06-23 SC_RUN_15995_2#104 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925314/15995_2#104.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925314/15995_2#104.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#104 ERR925216 SC_EXP_15995_2#5 219 3c762af896b3c2b72bec202af797c9fb;595c80b70d4c35f4fd15d443e422f8a6 1313 20cfe3448668a8d4c3d675ff6b1a8f08;909065bcc5548696b50cefc30a9d1d07 SAMEA3208936 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925216/ERR925216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925216/ERR925216_2.fastq.gz 1795376 WGS GPS_ZA_carriage_SP999-sc-2205073 RANDOM 56488518;58306651 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925216/ERR925216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925216/ERR925216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925216/15995_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925216/15995_2#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925216/ERR925216_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925216/ERR925216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925216/15995_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925216/15995_2#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93801310;2998 ERS640038 ERX1004491 GENOMIC 13301162 179537600 2015-06-23 SC_RUN_15995_2#5 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925216/15995_2#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925216/15995_2#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#5 ERR913569 SC_EXP_15874_1#94 217 94fd048a36e015d378ab84b0775a4078;fa1bcd96b1c3f65382c9d342ee853672 1313 f5e2105f6409cfdbe6d019be639b38d1;f66d7baf68bbc7e4ac69c709166078cf SAMEA3207118 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913569/ERR913569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913569/ERR913569_2.fastq.gz 4585496 WGS GPS_ZA_carriage_SP452-sc-2192055 RANDOM 133630073;142091545 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913569/ERR913569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913569/ERR913569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913569/15874_1#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913569/15874_1#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913569/ERR913569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913569/ERR913569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913569/15874_1#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913569/15874_1#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 222477430;7373 ERS639128 ERX992693 GENOMIC 13242120 458549600 2015-06-17 SC_RUN_15874_1#94 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913569/15874_1#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913569/15874_1#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#94 ERR909047 SC_EXP_15841_3#8 225 1746ead9f06887f05fe25a8d20e567dc;5883e145ee73a1a0dffc86559612f99e 1313 a7bccb58edde0232c5177df0ebbcb894;0c088ded51fe12ee932a628fcc8ff7f3 SAMEA3208654 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909047/ERR909047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909047/ERR909047_2.fastq.gz 6383258 WGS GPS_ZA_carriage_SP750-sc-2204788 RANDOM 193653310;199904708 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909047/ERR909047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909047/ERR909047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909047/15841_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909047/15841_3#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909047/ERR909047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909047/ERR909047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909047/15841_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909047/15841_3#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 318442864;10249 ERS639756 ERX988302 GENOMIC 13267872 638325800 2015-06-09 SC_RUN_15841_3#8 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909047/15841_3#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909047/15841_3#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#8 ERR908997 SC_EXP_15841_2#53 229 ff95a5f1082db081d0348f345f13242e;fba9efb3156cba3cc46d1c8ac7618093 1313 a761e1866eeff93746cc703df8e4bdc5;ea90df9b8975b7c6ae3c0716e8a41a28 SAMEA3207249 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908997/ERR908997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908997/ERR908997_2.fastq.gz 4936166 WGS GPS_ZA_carriage_SP625-sc-2192187 RANDOM 161319150;166816806 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908997/ERR908997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908997/ERR908997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908997/15841_2#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908997/15841_2#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908997/ERR908997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908997/ERR908997_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908997/15841_2#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908997/15841_2#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266113764;7834 ERS639259 ERX988252 GENOMIC 13265134 493616600 2015-06-09 SC_RUN_15841_2#53 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908997/15841_2#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908997/15841_2#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#53 ERR909321 SC_EXP_15841_5#92 223 4dabfb0d72a648f30bc08436ec66cd1f;8a3b748a5c1fd1daf5e613bad83e811d 1313 62539b2dc09e5b177a6ebf673625455e;e888d16f8b96784a6eed7649d734c6f7 SAMEA3207002 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909321/ERR909321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909321/ERR909321_2.fastq.gz 5347216 WGS GPS_ZA_carriage_SP333-sc-2191938 RANDOM 167600742;173193699 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909321/ERR909321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909321/ERR909321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909321/15841_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909321/15841_5#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909321/ERR909321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909321/ERR909321_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909321/15841_5#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909321/15841_5#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276213812;8669 ERS639012 ERX988576 GENOMIC 13275970 534721600 2015-06-09 SC_RUN_15841_5#92 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909321/15841_5#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909321/15841_5#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#92 ERR909190 SC_EXP_15841_4#56 228 70f1612b97c979acf783200c4b249507;15482cdb369b4fc817e8360b5f9cf58d 1313 ed0ae200581eb0036e75894dba41546a;29811c5a31e699bd54633cde7cd64862 SAMEA3208797 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909190/ERR909190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909190/ERR909190_2.fastq.gz 5111372 WGS GPS_ZA_carriage_SP851-sc-2204932 RANDOM 160979281;168084018 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909190/ERR909190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909190/ERR909190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909190/15841_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909190/15841_4#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909190/ERR909190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909190/ERR909190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909190/15841_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909190/15841_4#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266035085;8260 ERS639899 ERX988445 GENOMIC 13267995 511137200 2015-06-09 SC_RUN_15841_4#56 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909190/15841_4#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909190/15841_4#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#56 ERR909177 SC_EXP_15841_4#43 228 656af5918aac2332769911da3bcc09b7;1720e6209f18961eab36db1500234a63 1313 b02d4d05ac8eb9201108cc8b0020e462;c4208cbbab9be048cf3c12a73a7cd97a SAMEA3208784 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909177/ERR909177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909177/ERR909177_2.fastq.gz 5332726 WGS GPS_ZA_carriage_SP790-sc-2204919 RANDOM 166335034;172944881 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909177/ERR909177_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909177/ERR909177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909177/15841_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909177/15841_4#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909177/ERR909177_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909177/ERR909177_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909177/15841_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909177/15841_4#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274175197;8596 ERS639886 ERX988432 GENOMIC 13267934 533272600 2015-06-09 SC_RUN_15841_4#43 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909177/15841_4#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909177/15841_4#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#43 ERR900730 SC_EXP_15731_8#85 230 f30f6dc5021d485b9edd391b049e7542;58cfa39df907fcf43a069f0a8f4417d2 1313 0fc2ed7fe9815df57d9f4e06c66e7232;3547983d37e7e05f9450243b67d2d58b SAMEA3206710 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900730/ERR900730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900730/ERR900730_2.fastq.gz 4580984 WGS GPS_ZA_carriage_SP59-sc-2191643 RANDOM 140801708;146625054 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900730/ERR900730_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900730/ERR900730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900730/15731_8#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900730/15731_8#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900730/ERR900730_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900730/ERR900730_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900730/15731_8#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900730/15731_8#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230887858;7280 ERS638720 ERX980119 GENOMIC 13208932 458098400 2015-05-26 SC_RUN_15731_8#85 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900730/15731_8#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900730/15731_8#85.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#85 ERR869821 SC_EXP_15531_2#8 193 0eed3778509fae93ae38bdc24cdb89fe;cceccec9ee3b3fa0471f3ed495b00636 1313 e299c2f3973478d3f3a6840fabe3b4ae;7eaa0d60bb91e984a174dc881afe5715 SAMEA3171239 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869821/ERR869821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869821/ERR869821_2.fastq.gz 4347316 WGS GPS_MW_155274-sc-2139803 RANDOM 164859151;157744003 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869821/ERR869821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR869/ERR869821/ERR869821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869821/15531_2#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869821/15531_2#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869821/ERR869821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR869/ERR869821/ERR869821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869821/15531_2#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR869/ERR869821/15531_2#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267578059;6973 ERS625630 ERX949422 GENOMIC 12862709 434731600 2015-05-06 SC_RUN_15531_2#8 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869821/15531_2#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR869/ERR869821/15531_2#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_2#8 ERR774538 SC_EXP_14936_4#65 220 f0f8aef46d7403942d5eda9a715ed8ce;271d210177e6caa0f84989138994832a 1313 dc86696398f3deb1f2b4198e154eed33;d3540d7f7020ee29c659ce31cef9d235 SAMEA2814370 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774538/ERR774538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774538/ERR774538_2.fastq.gz 4750244 WGS GPS_ZA_2582-sc-2138164 RANDOM 175270011;175605106 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774538/ERR774538_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774538/ERR774538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774538/14936_4#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774538/14936_4#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774538/ERR774538_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774538/ERR774538_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774538/14936_4#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774538/14936_4#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291571773;7614 ERS566738 ERX717417 GENOMIC 12347926 475024400 2015-03-03 SC_RUN_14936_4#65 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774538/14936_4#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774538/14936_4#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#65 ERR774101 SC_EXP_14913_5#4 225 74c5c97292af570ac8a17816d7dcaf23;12e3011697556bc1d040f62706dff50f 1313 b542f71f8dcadee16ac3d816c3ffd817;336447b586dea35980c7533de4f380c6 SAMEA2814404 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774101/ERR774101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774101/ERR774101_2.fastq.gz 4214858 WGS GPS_ZA_2616-sc-2138199 RANDOM 142477982;149225898 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774101/ERR774101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774101/ERR774101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774101/14913_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774101/14913_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774101/ERR774101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774101/ERR774101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774101/14913_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774101/14913_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238236810;6664 ERS566772 ERX716980 GENOMIC 12403403 421485800 2015-03-03 SC_RUN_14913_5#4 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774101/14913_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774101/14913_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#4 ERR774710 SC_EXP_14936_6#55 220 836301ab63e791605244b88189fb6bbe;80ccafe4cc9bf0f3009e244b857bb15a 1313 36d721984f848c85af9fca887c436743;2b66cad8c42595df14db7c4c46b2d743 SAMEA2783871 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774710/ERR774710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774710/ERR774710_2.fastq.gz 4756450 WGS GPS_MW_BQN18L-sc-2022368 RANDOM 172527905;174353441 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774710/ERR774710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774710/ERR774710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774710/14936_6#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774710/14936_6#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774710/ERR774710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774710/ERR774710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774710/14936_6#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774710/14936_6#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285170521;7585 ERS553616 ERX717589 GENOMIC 12318522 475645000 2015-03-03 SC_RUN_14936_6#55 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774710/14936_6#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774710/14936_6#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_6#55 ERR774063 SC_EXP_14913_4#61 230 e6edac5c4ebb3fcd0ba0497cce9256d2;35d8bb9952a0312ae5af1ccce8a334dd 1313 befb7b578a07a80759217212ed3a27eb;f7f7effc98e0206fc8b5fa05071fceb5 SAMEA2814158 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774063/ERR774063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774063/ERR774063_2.fastq.gz 5283828 WGS GPS_ZA_2388-sc-2022643 RANDOM 177229227;186065774 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774063/ERR774063_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774063/ERR774063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774063/14913_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774063/14913_4#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774063/ERR774063_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774063/ERR774063_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774063/14913_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774063/14913_4#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297506865;8417 ERS566526 ERX716942 GENOMIC 12396036 528382800 2015-03-03 SC_RUN_14913_4#61 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774063/14913_4#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774063/14913_4#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#61 ERR773853 SC_EXP_14913_2#39 226 8d88a0669e317b3889d02811888a0156;5ad8b6dfb865e25c9db6be11684d50fe 1313 978beb33db41bfe35456b6af00fc4033;7418480c7d6515977198f387e39e6c1a SAMEA2814063 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773853/ERR773853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773853/ERR773853_2.fastq.gz 5163146 WGS GPS_ZA_2271-sc-2022547 RANDOM 172807380;179312690 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773853/ERR773853_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773853/ERR773853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773853/14913_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773853/14913_2#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773853/ERR773853_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773853/ERR773853_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773853/14913_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773853/14913_2#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287620428;8298 ERS566431 ERX716732 GENOMIC 12395960 516314600 2015-03-03 SC_RUN_14913_2#39 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773853/14913_2#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773853/14913_2#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_2#39 ERR774038 SC_EXP_14913_4#36 230 66ecc05c2212e6bd1abd650a74d47b2c;45996f48b61353fc5b434eafdc7c87e4 1313 af010bc82ad4f846888c07a355576a8d;6290fccddc289758cc01fa4424878a91 SAMEA2814090 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774038/ERR774038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774038/ERR774038_2.fastq.gz 4687008 WGS GPS_ZA_2363-sc-2022574 RANDOM 158743618;166592620 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774038/ERR774038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774038/ERR774038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774038/14913_4#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774038/14913_4#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774038/ERR774038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774038/ERR774038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774038/14913_4#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774038/14913_4#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 265938132;7441 ERS566458 ERX716917 GENOMIC 12396021 468700800 2015-03-03 SC_RUN_14913_4#36 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774038/14913_4#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774038/14913_4#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#36 ERR742645 SC_EXP_14673_4#49 209 6f38f6cd242ca9474fe82ca4adeca68a;7dad35103dbfe03eb8002555ffe08e94 1313 bfd40f3911c24475e4402143aa774929;c9ca821b4629f3847fcbed8ba7385835 SAMEA2796742 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742645/ERR742645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742645/ERR742645_2.fastq.gz 5196824 WGS GPS_US_2009215713_R1-sc-2138726 RANDOM 165805314;169707280 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742645/ERR742645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742645/ERR742645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742645/14673_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742645/14673_4#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742645/ERR742645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742645/ERR742645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742645/14673_4#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742645/14673_4#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272979024;8413 ERS558353 ERX686328 GENOMIC 12061975 519682400 2015-01-27 SC_RUN_14673_4#49 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742645/14673_4#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742645/14673_4#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#49 ERR742662 SC_EXP_14673_4#66 209 1d73b4cc99a1d301989352cbbbbc3603;fc8e9444de12088e9ad944408caf5fb6 1313 c9022842a24bd18e197e26582923bf3b;6b0c92780401a2511edd46a477327e56 SAMEA2796759 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742662/ERR742662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742662/ERR742662_2.fastq.gz 4824468 WGS GPS_US_2010203161_R1-sc-2138743 RANDOM 155097974;159933644 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742662/ERR742662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742662/ERR742662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742662/14673_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742662/14673_4#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742662/ERR742662_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742662/ERR742662_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742662/14673_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742662/14673_4#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256188952;7734 ERS558370 ERX686345 GENOMIC 12061989 482446800 2015-01-27 SC_RUN_14673_4#66 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742662/14673_4#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742662/14673_4#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#66 ERR662378 SC_EXP_13710_1#62 186 93b8c9d15c9893ffac216f9dc341dc27;7a0515ca00c29de78b9d3158c762aeed 1313 2e4e0bfc4ec4ff4bd4aad65f42d89105;33a7015746d9ecd58fb593ffcf15b51e SAMEA2521505 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662378/ERR662378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662378/ERR662378_2.fastq.gz 5859602 WGS 2012215640-sc-1946799 RANDOM 188321265;195725097 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662378/ERR662378_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662378/ERR662378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662378/13710_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662378/13710_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662378/ERR662378_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662378/ERR662378_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662378/13710_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662378/13710_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 319545495;9560 ERS455045 ERX618654 GENOMIC 11100409 585960200 2014-10-28 SC_RUN_13710_1#62 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662378/13710_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662378/13710_1#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#62 ERR600588 SC_EXP_13415_6#89 231 04bca89e67e256718d9c991847d07df8;0142b836600cd91982ab258f18e96921 1313 536fc0ad6112770a50165215d75e1347;a4e82e5ef0b3db0468bdda4a23d12ed8 SAMEA2554104 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600588/ERR600588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600588/ERR600588_2.fastq.gz 4688444 WGS GPS_ZA_993-sc-1951140 RANDOM 155187909;160480356 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600588/ERR600588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600588/ERR600588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600588/13415_6#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600588/13415_6#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600588/ERR600588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600588/ERR600588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600588/13415_6#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600588/13415_6#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260893957;7742 ERS464605 ERX557417 GENOMIC 10631286 468844400 2014-09-16 SC_RUN_13415_6#89 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600588/13415_6#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600588/13415_6#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#89 ERR586395 SC_EXP_13154_3#20 234 1a793cdf67e0b4e16b3762579e0970ac;583c42a6b4c1301db23ecc73ca9777df 1313 2c55b3733e327001b6da2720e108adae;e345d884a6e49c2e01500e54996ff891 SAMEA2467562 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586395/ERR586395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586395/ERR586395_2.fastq.gz 5918038 WGS 2009218297-sc-1926348 RANDOM 185211445;190779802 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586395/ERR586395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586395/ERR586395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586395/13154_3#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586395/13154_3#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586395/ERR586395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586395/ERR586395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586395/13154_3#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586395/13154_3#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 309065023;9653 ERS437319 ERX544403 GENOMIC 10228206 591803800 2014-08-27 SC_RUN_13154_3#20 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586395/13154_3#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586395/13154_3#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_3#20 ERR129200 SC_EXP_7622_5#80 225 5f2c29da9af9f86ce7799ba52aaee42b 1313 4e298cc1424a32a3e57759fac3d955be;1d3f928f42defe289efb43ecc15a5de4 SAMEA1463008 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129200/ERR129200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129200/ERR129200_2.fastq.gz 2849493 WGS ND6038-sc-2011-11-08T10:08:30Z-1298459 RANDOM 302431074;310935687 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129200/ERR129200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129200/ERR129200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129200/7622_5#80.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129200/ERR129200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129200/ERR129200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129200/7622_5#80.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 593796056 ERS070091 ERX105341 GENOMIC 4336609 569898600 2012-05-28 SC_RUN_7622_5#80 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129200/7622_5#80.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR129173 SC_EXP_7622_5#53 225 127341368b92857460b4e97611c9f8e4 1313 ffb263d147acfb9161a807693f0438d0;21a83a153e10f504a1b11bae12d8f2f7 SAMEA1463124 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129173/ERR129173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129173/ERR129173_2.fastq.gz 2749396 WGS MD5042-sc-2011-11-08T10:08:10Z-1298432 RANDOM 292670149;301940891 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129173/ERR129173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129173/ERR129173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129173/7622_5#53.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129173/ERR129173_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129173/ERR129173_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129173/7622_5#53.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 579075507 ERS070064 ERX105314 GENOMIC 4336582 549879200 2012-05-28 SC_RUN_7622_5#53 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129173/7622_5#53.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR069733 SC_EXP_6999_3#5 248 baab5d0f611811df21fd1739e94abe2d 1313 0aa600ff824be8648845cbbd85dfda82;d20d9457b5c31b6a715857c119aaa9cc SAMEA1032515 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069733/ERR069733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069733/ERR069733_2.fastq.gz 4353958 WGS 007649-sc-2011-08-01T09:44:59Z-1250104 RANDOM 247605195;253476243 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069733/ERR069733_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069733/ERR069733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069733/6999_3#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069733/ERR069733_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069733/ERR069733_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069733/6999_3#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 651999626 ERS044039 ERX047586 GENOMIC 3736954 653093700 2012-01-19 SC_RUN_6999_3#5 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069733/6999_3#5.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR124277 SC_EXP_7553_5#61 207 3a47a9ce988b4b933a84fd7a6b259d9b 1313 59068a3df7c467286f0e1320f8327a4f;6972f25855ad84019fb6679b98b52c91 SAMEA1463139 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124277/ERR124277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124277/ERR124277_2.fastq.gz 4515555 WGS NP7122-sc-2011-11-08T10:09:29Z-1298536 RANDOM 474487670;495885166 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124277/ERR124277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124277/ERR124277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124277/7553_5#61.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124277/ERR124277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124277/ERR124277_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124277/7553_5#61.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 950098723 ERS070168 ERX100459 GENOMIC 4383180 903111000 2012-05-09 SC_RUN_7553_5#61 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124277/7553_5#61.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR067962 SC_EXP_6952_7#3 226 23d3deff53804feddfbe320f1f0daa02 1313 6affb0172aed0972e8108c4b13733f01;66a95ed29d07004991b2ccaba3ed3fda SAMEA1032514 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067962/ERR067962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067962/ERR067962_2.fastq.gz 4078349 WGS 3164-sc-2011-08-01T09:44:10Z-1250033 RANDOM 238392383;235056087 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067962/ERR067962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067962/ERR067962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067962/6952_7#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067962/ERR067962_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067962/ERR067962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067962/6952_7#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 611053883 ERS043968 ERX045825 GENOMIC 3758224 611752350 2012-01-16 SC_RUN_6952_7#3 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067962/6952_7#3.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR068002 SC_EXP_7001_1#20 229 055b57d5319db8a27ce9b1d711f392c5 1313 74359dc4bdea19c527d0467dbe626031;14f503717a199c021cd4ab93a0fc77e0 SAMEA1032544 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068002/ERR068002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068002/ERR068002_2.fastq.gz 4441507 WGS 3097-sc-2011-08-01T09:43:31Z-1249981 RANDOM 265673723;266414862 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068002/ERR068002_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068002/ERR068002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068002/7001_1#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068002/ERR068002_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068002/ERR068002_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068002/7001_1#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 678839909 ERS043916 ERX045865 GENOMIC 3757002 666226050 2012-01-16 SC_RUN_7001_1#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068002/7001_1#20.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR065300 SC_EXP_6925_1#62 245 f5b45706a22d223ef4861eb6af740b70 1313 deb2af27684f46db21fe773991d97d53;dd0ccb93bd13f9ed5b52e1dd1127e472 SAMEA1032644 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065300/ERR065300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065300/ERR065300_2.fastq.gz 3725352 WGS 3044-sc-2011-08-01T09:42:53Z-1249929 RANDOM 215004256;218770211 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065300/ERR065300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065300/ERR065300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065300/6925_1#62.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065300/ERR065300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065300/ERR065300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065300/6925_1#62.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 556409267 ERS043864 ERX043273 GENOMIC 3610872 558802800 2012-01-05 SC_RUN_6925_1#62 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065300/6925_1#62.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR2089766 SC_EXP_22027_1#146 454 d1491888cb6c8c6a495f865e5247b8bd;bc3c229cbfbba42c3b9524d6442b362f 1313 4d96c3b5770283d3db27d4e749e8da7c;710b3ca453ababfdf0c90b25be9f1429 SAMEA104155121 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089766/ERR2089766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089766/ERR2089766_2.fastq.gz 2572748 WGS 9a0fec20-c37a-11e6-b158-3c4a9275d6c8 RANDOM 46977953;50892743 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089766/ERR2089766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089766/ERR2089766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089766/22027_1#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089766/22027_1#146.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089766/ERR2089766_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089766/ERR2089766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089766/22027_1#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089766/22027_1#146.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68249388;4308 ERS1814139 ERX2146560 GENOMIC DN477278F:B8 321593500 2017-08-08 SC_RUN_22027_1#146 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089766/22027_1#146.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089766/22027_1#146.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22027_1#146 ERR039582 SC_EXP_6259_5#23 197 0b2bb9ce1dfd371fee89725f2b169d09 1313 1bd972712086ae4a1d84cb4fec2edf30;14e3fc1f065dde35e72483bc6f1da19c SAMEA974648 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039582/ERR039582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039582/ERR039582_2.fastq.gz 3467492 WGS SMRU23-sc-2011-01-27-1026448 RANDOM 191019370;198195613 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039582/ERR039582_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039582/ERR039582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039582/6259_5#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039582/ERR039582_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039582/ERR039582_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039582/6259_5#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 489641126 ERS019181 ERX016755 GENOMIC 2590867 520123800 2011-07-27 SC_RUN_6259_5#23 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039582/6259_5#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2089367 SC_EXP_21999_7#105 449 2e7a0a8fed371073f43f4151244b69eb;25970c0c5624a81c1bd4d42b869a4628 1313 faddd9833132d7091a348765a351fe37;c4d3ffc8be2485336ff8533888d9ea11 SAMEA104154632 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089367/ERR2089367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089367/ERR2089367_2.fastq.gz 1964214 WGS 659b6cd0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 39020122;42443740 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089367/ERR2089367_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089367/ERR2089367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089367/21999_7#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089367/21999_7#105.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089367/ERR2089367_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089367/ERR2089367_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089367/21999_7#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089367/21999_7#105.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56514420;3343 ERS1813650 ERX2146161 GENOMIC DN476874P:B2 245526750 2017-08-08 SC_RUN_21999_7#105 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089367/21999_7#105.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089367/21999_7#105.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#105 ERR1788262 SC_EXP_21127_1#64 451 d8dccb4c15e0d15a1e6f29a9ed87818e;751276d67b1fe50e73380830023e432e 1313 7684f1a2d41ecd9d4676c34375f2269b;8be1bd025e4b3c1f2477045f3b3ff849 SAMEA4388210 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788262/ERR1788262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788262/ERR1788262_2.fastq.gz 2431178 WGS 64da3a60-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 45525608;44211352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788262/ERR1788262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788262/ERR1788262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788262/21127_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788262/21127_1#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/002/ERR1788262/ERR1788262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/002/ERR1788262/ERR1788262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788262/21127_1#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788262/21127_1#64.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63800136;4121 ERS1299659 ERX1851985 GENOMIC DN465133W:A9 303897250 2017-01-11 SC_RUN_21127_1#64 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788262/21127_1#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788262/21127_1#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#64 ERR1788255 SC_EXP_21127_1#57 448 a41eb877f999c316cee2125fb703c505;4fb142c66dd4a5967688a1dd0e5d3d62 1313 541812fc36f47f88155833010c196c72;559a968831a4ab3db38bc67888099ea6 SAMEA4387961 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788255/ERR1788255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788255/ERR1788255_2.fastq.gz 2479184 WGS 64925bf0-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 46264212;45413183 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788255/ERR1788255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788255/ERR1788255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788255/21127_1#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788255/21127_1#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788255/ERR1788255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788255/ERR1788255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788255/21127_1#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788255/21127_1#57.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64558896;4187 ERS1299410 ERX1851978 GENOMIC DN465133W:B8 309898000 2017-01-11 SC_RUN_21127_1#57 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788255/21127_1#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788255/21127_1#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#57 ERR1453686 SC_EXP_19341_3#38 462 8bba291378e84068de3021a4277f19d8;079b1e16add7d2b1fb03313287a7ac67 1313 b98582a33ca63b09e2ed8df6248b5f61;4a93ef08ef5275509878f4097bc00e43 SAMEA3713985 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453686/ERR1453686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453686/ERR1453686_2.fastq.gz 2642456 WGS 3a1cab90-41bd-11e5-998e-3c4a9275d6c6 RANDOM 55887195;62100851 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453686/ERR1453686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453686/ERR1453686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453686/19341_3#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453686/19341_3#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453686/ERR1453686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453686/ERR1453686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453686/19341_3#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453686/19341_3#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84380135;4425 ERS1021134 ERX1524164 GENOMIC 16008478 330307000 2016-06-14 SC_RUN_19341_3#38 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453686/19341_3#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453686/19341_3#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#38 ERR1453526 SC_EXP_19341_2#59 458 a0f06a430194d88dbda05657571e73c5;af4c2fa524fe36f9e67fec1fd01aaa44 1313 3779123c1288a855639d12e31c3b6104;a5c082dcaedfd6201f1a71798c895de8 SAMEA3506054 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453526/ERR1453526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453526/ERR1453526_2.fastq.gz 2554256 WGS GPS_MW_BKR5WC-sc-2377556 RANDOM 51422184;57583200 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453526/ERR1453526_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/006/ERR1453526/ERR1453526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453526/19341_2#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453526/19341_2#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453526/ERR1453526_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/006/ERR1453526/ERR1453526_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453526/19341_2#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453526/19341_2#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76945778;4318 ERS813203 ERX1524004 GENOMIC 15972470 319282000 2016-06-14 SC_RUN_19341_2#59 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453526/19341_2#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453526/19341_2#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_2#59 ERR1214609 SC_EXP_18090_2#101 454 8f27b684e165f9211b563ef2390ca7ff;df3019cff5a3add2e8dffe38906d0c77 1313 be00dc1972ad32c13f02604f2d075b63;4af75ae13ce59c73335f37fc1a0fee3b SAMEA3431553 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214609/ERR1214609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214609/ERR1214609_2.fastq.gz 3390090 WGS GPS_HK_104-sc-2296727 RANDOM 64751035;70481825 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214609/ERR1214609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/009/ERR1214609/ERR1214609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214609/18090_2#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214609/18090_2#101.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214609/ERR1214609_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/009/ERR1214609/ERR1214609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214609/18090_2#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214609/18090_2#101.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 96122686;5704 ERS740838 ERX1286822 GENOMIC 15080096 423761250 2016-01-19 SC_RUN_18090_2#101 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214609/18090_2#101.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214609/18090_2#101.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#101 ERR1214608 SC_EXP_18090_2#100 454 c805e2048d02d76a94f179a22439d8c5;49ed7ddfd622ff57ed8e32a1b8d018fb 1313 3efea2e15df7e97b38a791da8c1dbef8;19d4e6b57eb1fdec5c23e07b80b7efb1 SAMEA3431551 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214608/ERR1214608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214608/ERR1214608_2.fastq.gz 3471010 WGS GPS_HK_103-sc-2296725 RANDOM 68662251;75538709 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214608/ERR1214608_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214608/ERR1214608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214608/18090_2#100.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214608/18090_2#100.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214608/ERR1214608_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214608/ERR1214608_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214608/18090_2#100.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214608/18090_2#100.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103959737;5748 ERS740836 ERX1286821 GENOMIC 15080084 433876250 2016-01-19 SC_RUN_18090_2#100 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214608/18090_2#100.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214608/18090_2#100.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#100 ERR979934 SC_EXP_16288_3#61 234 9491f9f79a2ced193e28ae1ea734f2f8;9a970480afaa0b85c04669c1ed2d0fe5 1313 f8f847cfbc83d6eeb25241554f66ac37;cdd8617a751224e9305e5af2932e7a98 SAMEA3232404 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979934/ERR979934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979934/ERR979934_2.fastq.gz 4072462 WGS GPS_NP_2031-sc-2205322 RANDOM 134824400;132486695 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979934/ERR979934_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979934/ERR979934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979934/16288_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979934/16288_3#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979934/ERR979934_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979934/ERR979934_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979934/16288_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979934/16288_3#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 215395916;6458 ERS653615 ERX1056806 GENOMIC 13296191 407246200 2015-08-12 SC_RUN_16288_3#61 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979934/16288_3#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979934/16288_3#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#61 ERR870235 SC_EXP_15531_6#43 212 8912a2854e8c61f0c5f391086da17de1;65ec04690a5e1a2c97e678c82e35f003 1313 68a48bf47cc551022d487648192dcc54;0a0e8a24c95b77d5fb123c5ff3b624c8 SAMEA3172986 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870235/ERR870235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870235/ERR870235_2.fastq.gz 3613356 WGS GPS_GM_1130-sc-2190545 RANDOM 139091175;132183895 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870235/ERR870235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870235/ERR870235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870235/15531_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870235/15531_6#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870235/ERR870235_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870235/ERR870235_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870235/15531_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870235/15531_6#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 223910183;5819 ERS627229 ERX949836 GENOMIC 12870045 361335600 2015-05-06 SC_RUN_15531_6#43 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870235/15531_6#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870235/15531_6#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#43 ERR979959 SC_EXP_16288_4#3 217 c9a63e8849f15c63593ada349b691a36;09c6ae2f88f372eda413ee41b70ff37b 1313 78b72d8bb9ad2b55c5fc7fff402ef8c7;cf59e287eaba848a9b941ffb603db432 SAMEA3232429 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979959/ERR979959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979959/ERR979959_2.fastq.gz 5555450 WGS GPS_NP_2148-sc-2205347 RANDOM 201292132;197878773 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979959/ERR979959_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979959/ERR979959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979959/16288_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979959/16288_4#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979959/ERR979959_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979959/ERR979959_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979959/16288_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979959/16288_4#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325564557;8649 ERS653640 ERX1056831 GENOMIC 13296257 555545000 2015-08-12 SC_RUN_16288_4#3 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979959/16288_4#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979959/16288_4#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#3 ERR1202593 SC_EXP_17966_5#143 464 a3aa9da792e0c32c837d33021c41ad49;90424def706439823e80957a8b40f39d 1313 4568e3ba729bfb2dfa01b4301b0c3787;74ea164e91269b12059e76fe6ffa85da SAMEA3431247 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202593/ERR1202593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202593/ERR1202593_2.fastq.gz 2316106 WGS GPS_US_2010209945_R1-sc-2296419 RANDOM 39640801;41536143 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202593/ERR1202593_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202593/ERR1202593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202593/17966_5#143.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202593/17966_5#143.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202593/ERR1202593_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202593/ERR1202593_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202593/17966_5#143.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202593/17966_5#143.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56407259;3892 ERS740532 ERX1274835 GENOMIC 15024768 289513250 2016-01-12 SC_RUN_17966_5#143 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202593/17966_5#143.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202593/17966_5#143.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#143 ERR980355 SC_EXP_16288_8#87 202 d6cd973d6fd25a89dee8c414ed3ffcf9;52e9477137f98e0c5792e7cd9a68e996 1313 4057fcebb59fd946386ea48d87af5162;76f1ec09272111b59865f56cc548b45c SAMEA3232853 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980355/ERR980355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980355/ERR980355_2.fastq.gz 4147202 WGS GPS_NP_4242-sc-2205767 RANDOM 140018821;136420050 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980355/ERR980355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980355/ERR980355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980355/16288_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980355/16288_8#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980355/ERR980355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980355/ERR980355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980355/16288_8#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980355/16288_8#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 223631968;6757 ERS654064 ERX1057227 GENOMIC 13301831 414720200 2015-08-12 SC_RUN_16288_8#87 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980355/16288_8#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980355/16288_8#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#87 ERR870253 SC_EXP_15531_6#61 212 3e1a942ede17a72add943010cc616a0a;f19caaeff165babb8d502e7f384ebca8 1313 1dd186198123a94fe1a990a6540d030d;6d9277234d156f6ec02da283a2102abc SAMEA3173004 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870253/ERR870253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870253/ERR870253_2.fastq.gz 4374978 WGS GPS_GM_1148-sc-2190563 RANDOM 168824687;159924642 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870253/ERR870253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870253/ERR870253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870253/15531_6#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870253/15531_6#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870253/ERR870253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870253/ERR870253_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870253/15531_6#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870253/15531_6#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272650197;7042 ERS627247 ERX949854 GENOMIC 12870071 437497800 2015-05-06 SC_RUN_15531_6#61 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870253/15531_6#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870253/15531_6#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#61 ERR862260 SC_EXP_15378_2#2 205 10e44923fcc6991cdcdc6471784d68ba;6bcb529f6392c77d3fb4e91d0e2789e3 1313 191465623effa612440ef587b1fabf36;3eb643473f00af217c3f15f4282045f3 SAMEA3170997 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862260/ERR862260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862260/ERR862260_2.fastq.gz 3854588 WGS GPS_MW_D38253_R1-sc-2139559 RANDOM 114021245;118195686 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862260/ERR862260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862260/ERR862260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862260/15378_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862260/15378_2#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862260/ERR862260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862260/ERR862260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862260/15378_2#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862260/15378_2#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 187105446;6196 ERS625388 ERX941910 GENOMIC 12810446 385458800 2015-04-21 SC_RUN_15378_2#2 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862260/15378_2#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862260/15378_2#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#2 ERR774121 SC_EXP_14913_5#24 225 658f73f4bded0a54e2d4543fd7225e14;c0d7a57869a87d72940c301e7f7a6ff1 1313 7b9b64f7299e52e427d988ff9f97f718;6a02d369f5762290eb51645f8c86f1f4 SAMEA2814424 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774121/ERR774121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774121/ERR774121_2.fastq.gz 5496838 WGS GPS_ZA_2636-sc-2138219 RANDOM 180998253;188284457 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774121/ERR774121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774121/ERR774121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774121/14913_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774121/14913_5#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774121/ERR774121_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774121/ERR774121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774121/14913_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774121/14913_5#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302437042;8857 ERS566792 ERX717000 GENOMIC 12403453 549683800 2015-03-03 SC_RUN_14913_5#24 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774121/14913_5#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774121/14913_5#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#24 ERR774515 SC_EXP_14936_4#42 220 596a7bb089792e8e9b393eb9cd338d15;0aa71a9667746f5fdc4f94f189f36ced 1313 7f154e44774392d1298c3f38856a28b6;9ef0e331dbe2739c7bdbc202944efb1d SAMEA2814347 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774515/ERR774515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774515/ERR774515_2.fastq.gz 3950786 WGS GPS_ZA_2559-sc-2138141 RANDOM 146347449;147480685 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774515/ERR774515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774515/ERR774515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774515/14936_4#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774515/14936_4#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774515/ERR774515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774515/ERR774515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774515/14936_4#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774515/14936_4#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243314000;6333 ERS566715 ERX717394 GENOMIC 12347935 395078600 2015-03-03 SC_RUN_14936_4#42 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774515/14936_4#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774515/14936_4#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#42 ERR774349 SC_EXP_14913_7#65 228 3405fad4949949e35f9c87b938790ce5;7046562561d90f1795bc83d1c614c856 1313 5825e527774af7343d47eded881306fe;9d4895b8dd69342da75c4258a33ba7bd SAMEA2814275 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774349/ERR774349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774349/ERR774349_2.fastq.gz 4482282 WGS GPS_ZA_2487-sc-2022804 RANDOM 150245399;156262873 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774349/ERR774349_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774349/ERR774349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774349/14913_7#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774349/14913_7#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774349/ERR774349_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774349/ERR774349_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774349/14913_7#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774349/14913_7#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 250994198;7166 ERS566643 ERX717228 GENOMIC 12357929 448228200 2015-03-03 SC_RUN_14913_7#65 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774349/14913_7#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774349/14913_7#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#65 ERR774045 SC_EXP_14913_4#43 230 98f078331c6cf3b10a74231c0c9d22a1;1007e05a4744d483b93b0c0ed389d7c0 1313 f6f2110b7efadc1106714ed3e68c34a4;989369c32df13e15da559cace282afd2 SAMEA2814112 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774045/ERR774045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774045/ERR774045_2.fastq.gz 5034262 WGS GPS_ZA_2370-sc-2022596 RANDOM 168095803;175834272 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774045/ERR774045_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774045/ERR774045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774045/14913_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774045/14913_4#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774045/ERR774045_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774045/ERR774045_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774045/14913_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774045/14913_4#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281096418;8070 ERS566480 ERX716924 GENOMIC 12396010 503426200 2015-03-03 SC_RUN_14913_4#43 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774045/14913_4#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774045/14913_4#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#43 ERR730221 SC_EXP_14520_4#82 222 b480283ba0fae4e573e6fdea7959173d;fb6cbaa01de8d8fadc08867aceb9ec49 1313 793f6d75074547a9674d3af725852471;fddaebecafee2fdb1da2ee14b815ed9f SAMEA2696365 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730221/ERR730221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730221/ERR730221_2.fastq.gz 5957366 WGS GPS_GM_0600-sc-2021819 RANDOM 225154293;233185650 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730221/ERR730221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730221/ERR730221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730221/14520_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730221/14520_4#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730221/ERR730221_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730221/ERR730221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730221/14520_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730221/14520_4#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 382776833;9882 ERS524944 ERX674167 GENOMIC 11982765 595736600 2015-01-14 SC_RUN_14520_4#82 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730221/14520_4#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730221/14520_4#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_4#82 ERR714121 SC_EXP_14410_4#19 220 9cc727eaab995a9d0e9b0cdbfc0c7f8d;21d6a0bcc6501b7e50984bc0b2961359 1313 84d0a4898d363b8f78142b07490b5dc9;7b069c56e1f1b5473c765dab5d2050ea SAMEA2627260 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714121/ERR714121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714121/ERR714121_2.fastq.gz 5690742 WGS GPS_GM_0282-sc-2003190 RANDOM 196314479;197444238 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714121/ERR714121_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714121/ERR714121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714121/14410_4#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714121/14410_4#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714121/ERR714121_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714121/ERR714121_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714121/14410_4#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714121/14410_4#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322940602;9399 ERS497159 ERX658043 GENOMIC 11858269 569074200 2015-01-08 SC_RUN_14410_4#19 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714121/14410_4#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714121/14410_4#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#19 ERR662396 SC_EXP_13710_2#8 196 566bf7ce9ac1a62ff127d57218951105;96ef7e2c8d4aad8e47731bc5cfad3763 1313 ffbcbd2c6486d983751048aa8fac08df;691fec868cb9b1d0d1b1287d6b8108a9 SAMEA2521570 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662396/ERR662396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662396/ERR662396_2.fastq.gz 6222668 WGS 2012214448-sc-1946862 RANDOM 206972146;217419307 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662396/ERR662396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662396/ERR662396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662396/13710_2#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662396/13710_2#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662396/ERR662396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662396/ERR662396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662396/13710_2#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662396/13710_2#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 359108864;10030 ERS455110 ERX618672 GENOMIC 11100523 622266800 2014-10-28 SC_RUN_13710_2#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662396/13710_2#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662396/13710_2#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#8 ERR662384 SC_EXP_13710_1#68 186 07a8c45661c11b85755745e3768e1da0;10577e4e4dbcab6fa82b0c09c06bcfac 1313 d81622815a9c76ffa857da18c66765d8;621a4e78026e2c1abdd34bacaa6f21a7 SAMEA2521522 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662384/ERR662384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662384/ERR662384_2.fastq.gz 5453140 WGS 2013208723-sc-1946813 RANDOM 175948824;182655912 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662384/ERR662384_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662384/ERR662384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662384/13710_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662384/13710_1#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662384/ERR662384_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662384/ERR662384_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662384/13710_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662384/13710_1#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297014089;8919 ERS455062 ERX618660 GENOMIC 11100386 545314000 2014-10-28 SC_RUN_13710_1#68 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662384/13710_1#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662384/13710_1#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#68 ERR662376 SC_EXP_13710_1#60 186 4a3aa86b2daffbfa52abd9b19cfd62d4;10217881c4f7b419f8e92cb1250c8802 1313 1c444d0e56aa98d6957d3bd3374c7f36;b04cd03739385e55255858af17b75858 SAMEA2521503 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662376/ERR662376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662376/ERR662376_2.fastq.gz 6312390 WGS 2012215608-sc-1946797 RANDOM 200343760;206388559 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662376/ERR662376_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662376/ERR662376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662376/13710_1#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662376/13710_1#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662376/ERR662376_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662376/ERR662376_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662376/13710_1#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662376/13710_1#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 336291263;10372 ERS455043 ERX618652 GENOMIC 11100385 631239000 2014-10-28 SC_RUN_13710_1#60 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662376/13710_1#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662376/13710_1#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#60 ERR600229 SC_EXP_13414_3#5 223 e03332d827bc615e106df5bc55b80181;2dc96c62c5e61ae0f389f7b9866a53de 1313 7864365c38200522d4d2a6e27446ff20;60741b29a9fde3118f57612edf9ead86 SAMEA2521651 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600229/ERR600229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600229/ERR600229_2.fastq.gz 7423892 WGS 2012221165-sc-1946944 RANDOM 248816142;255963340 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600229/ERR600229_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600229/ERR600229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600229/13414_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600229/13414_3#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600229/ERR600229_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600229/ERR600229_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600229/13414_3#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600229/13414_3#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 419214392;11822 ERS455191 ERX557058 GENOMIC 10600639 742389200 2014-09-16 SC_RUN_13414_3#5 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600229/13414_3#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600229/13414_3#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#5 ERR662375 SC_EXP_13710_1#59 186 4b0260aad006a242130ce5c846af96bc;17e65870fc26697a6e4437c06a8a1dfd 1313 4fb48ba914a92ac2bb2b195fa59394fd;ea2a7e7a212e5b90f42ea23220ea9adc SAMEA2521502 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662375/ERR662375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662375/ERR662375_2.fastq.gz 5666032 WGS 2012215593-sc-1946796 RANDOM 181525916;188418282 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662375/ERR662375_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662375/ERR662375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662375/13710_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662375/13710_1#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662375/ERR662375_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662375/ERR662375_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662375/13710_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662375/13710_1#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307797369;9215 ERS455042 ERX618651 GENOMIC 11100373 566603200 2014-10-28 SC_RUN_13710_1#59 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662375/13710_1#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662375/13710_1#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#59 ERR600193 SC_EXP_13414_2#60 233 50b841f617e73364a248346713e5977c;66a71e916fb86ac4d877b9c4832129d4 1313 acb31616478034ef8b2e512ea96f066b;7657d385e62341ef55eab5ecc93a5a3f SAMEA2521611 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600193/ERR600193_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600193/ERR600193_2.fastq.gz 5034424 WGS 2012220613-sc-1946903 RANDOM 168779766;174240515 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600193/ERR600193_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600193/ERR600193_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600193/13414_2#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600193/13414_2#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600193/ERR600193_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600193/ERR600193_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600193/13414_2#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600193/13414_2#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281905662;8171 ERS455151 ERX557022 GENOMIC 10600537 503442400 2014-09-16 SC_RUN_13414_2#60 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600193/13414_2#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600193/13414_2#60.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#60 ERR352029 SC_EXP_10395_5#39 269 89d36a34f106f067cd83d8095e1e9489;dd3ae948f74aeba1e054f5069f02e758 1313 c059cbff26481c563d9fe92fa24ce0fb;909e5531ef4ca8e5b7d89c213fcdd643 SAMEA2066824 2013-10-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352029/ERR352029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352029/ERR352029_2.fastq.gz 4497542 WGS PI0258-sc-2013-05-02T11:26:45Z-1620066 RANDOM 154820994;163647009 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352029/ERR352029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352029/ERR352029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352029/10395_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352029/10395_5#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352029/ERR352029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352029/ERR352029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352029/10395_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352029/10395_5#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259301930;7217 ERS242923 ERX324812 GENOMIC 7705367 449754200 2013-10-14 SC_RUN_10395_5#39 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352029/10395_5#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352029/10395_5#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA257935 10395_5#39 ERR505700 SC_EXP_12291_3#72 215 7eb8227056c437e51138beae41fbfc1c;d35344a163b1a17fa66d275647bd4b0e 1313 df772e7834791cde11689bc9570f411b;5a5153f2ece700a4ef16407c9cc131e5 SAMEA2335914 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505700/ERR505700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505700/ERR505700_2.fastq.gz 5174700 WGS PATH3472-sc-1810841 RANDOM 167758427;172732549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505700/ERR505700_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505700/ERR505700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505700/12291_3#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505700/12291_3#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505700/ERR505700_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505700/ERR505700_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505700/12291_3#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505700/12291_3#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 276600642;8140 ERS394108 ERX471057 GENOMIC 9439898 517470000 2014-05-19 SC_RUN_12291_3#72 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505700/12291_3#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505700/12291_3#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_3#72 ERR460196 SC_EXP_11893_8#10 250 3ffd06690f3762acb73ca0146c1d4c45;0306dc22f76969fb2e78e6520b060e11 1313 05cfcf7c0b0220ae7ab6295b94835443;ab51ef7be2712373eab29b68ca99b9df SAMEA2203281 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460196/ERR460196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460196/ERR460196_2.fastq.gz 5723576 WGS PI0167-sc-2013-10-09T11:40:01Z-1708771 RANDOM 200159678;206697447 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460196/ERR460196_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460196/ERR460196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460196/11893_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460196/11893_8#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460196/ERR460196_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460196/ERR460196_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460196/11893_8#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460196/11893_8#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 337321256;9427 ERS355785 ERX426537 GENOMIC 9028925 572357600 2014-03-18 SC_RUN_11893_8#10 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460196/11893_8#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460196/11893_8#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA294544 11893_8#10 ERR129087 SC_EXP_7622_3#63 221 fa81d04e79078b7c26df0929a768740e 1313 ca44b9eac3ea63a732b9852b7ba289c3;084f8d1e31a12eac551133f7fe51c602 SAMEA1463061 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129087/ERR129087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129087/ERR129087_2.fastq.gz 2782028 WGS CH2075-sc-2011-11-08T10:07:08Z-1298346 RANDOM 299520029;302032922 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129087/ERR129087_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129087/ERR129087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129087/7622_3#63.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129087/ERR129087_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129087/ERR129087_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129087/7622_3#63.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 581128268 ERS069978 ERX105228 GENOMIC 4336496 556405600 2012-05-28 SC_RUN_7622_3#63 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129087/7622_3#63.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR064081 SC_EXP_6938_6#15 230 420baf4e6327ab8196482ca5d60e828b 1313 3344a3f0bcfff82845a7c576fe46755b;8f174162c7d05adfa47d26da037ad8f9 SAMEA1029029 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064081/ERR064081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064081/ERR064081_2.fastq.gz 2645507 WGS SMRU2679-sc-2011-01-27-1062892 RANDOM 185694622;191504852 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064081/ERR064081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064081/ERR064081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064081/6938_6#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064081/ERR064081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064081/ERR064081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064081/6938_6#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 482979038 ERS022189 ERX042054 GENOMIC 3651699 396826050 2012-03-19 SC_RUN_6938_6#15 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064081/6938_6#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048077 SC_EXP_6631_2#16 205 b1329177fb6ec03f0a6e4d0e91395e6a 1313 875580d07a50efebcd8666517c4e5d59;f6cf9a2a9a3077207d6c5ea8748b9a79 SAMEA1023835 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048077/ERR048077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048077/ERR048077_2.fastq.gz 6087046 WGS SMRU352-sc-2011-01-27-1060541 RANDOM 350917419;348559596 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048077/ERR048077_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048077/ERR048077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048077/6631_2#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048077/ERR048077_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048077/ERR048077_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048077/6631_2#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 867114339 ERS019510 ERX025140 GENOMIC 2952139 913056900 2011-10-11 SC_RUN_6631_2#16 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048077/6631_2#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048133 SC_EXP_6631_4#24 234 09497cf2b91e5a5521ab12d239c9a6d1 1313 ea56acdb7be196812e4546a937e141b2;4ee6f859dc20c65484b44d60dd3769ca SAMEA1023937 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048133/ERR048133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048133/ERR048133_2.fastq.gz 3857166 WGS SMRU456-sc-2011-01-27-1060645 RANDOM 209655465;197700741 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048133/ERR048133_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048133/ERR048133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048133/6631_4#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048133/ERR048133_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048133/ERR048133_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048133/6631_4#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 515928737 ERS019614 ERX025196 GENOMIC 2952243 578574900 2011-10-11 SC_RUN_6631_4#24 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048133/6631_4#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054645 SC_EXP_6755_6#17 249 b2c1dd4ed0141158d6352c5afea4387e 1313 17d4311d44af567d1e6c46e721f8e999;7f93dd9b1f8fb34dc94b61ada4e76f94 SAMEA1025418 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054645/ERR054645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054645/ERR054645_2.fastq.gz 7841982 WGS SMRU1194-sc-2011-01-27-1061407 RANDOM 421575043;439071515 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054645/ERR054645_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054645/ERR054645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054645/6755_6#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054645/ERR054645_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054645/ERR054645_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054645/6755_6#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1069477318 ERS020704 ERX031691 GENOMIC 3308041 1176297300 2011-11-15 SC_RUN_6755_6#17 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054645/6755_6#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054533 SC_EXP_6755_2#1 204 a0682c873b04bf1353e476ab13dc6b62 1313 884fff9b98e73d81eaddea5e3b623892;d940a37fca358e3f3ad0edefb112f12c SAMEA1025044 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054533/ERR054533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054533/ERR054533_2.fastq.gz 4707061 WGS SMRU793-sc-2011-01-27-1060982 RANDOM 233567224;238339257 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054533/ERR054533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054533/ERR054533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054533/6755_2#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054533/ERR054533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054533/ERR054533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054533/6755_2#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 591714187 ERS020303 ERX031579 GENOMIC 3152302 706059150 2011-11-15 SC_RUN_6755_2#1 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054533/6755_2#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054298 SC_EXP_6736_4#5 246 1ac1b56fc8cdf8c3d1154b31eb91cc42 1313 342a3c3fe273dcba60c68a0f31ecc58f;2a36fc045ae8eeb70468bc90331a2acd SAMEA1025529 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054298/ERR054298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054298/ERR054298_2.fastq.gz 5693613 WGS SMRU1205-sc-2011-01-27-1061418 RANDOM 322263135;343630535 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054298/ERR054298_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054298/ERR054298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054298/6736_4#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054298/ERR054298_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054298/ERR054298_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054298/6736_4#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 843556401 ERS020715 ERX031344 GENOMIC 3308052 854041950 2011-11-15 SC_RUN_6736_4#5 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054298/6736_4#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051636 SC_EXP_6731_5#10 232 1da27c81fde2f247fb18dd357bd620ca 1313 611d9df447c4b96903cb3595d19bd138;946856b785efa597421b297bf8c65e97 SAMEA1025005 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051636/ERR051636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051636/ERR051636_2.fastq.gz 4166483 WGS SMRU1090-sc-2011-01-27-1061303 RANDOM 266569022;281521161 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051636/ERR051636_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051636/ERR051636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051636/6731_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051636/ERR051636_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051636/ERR051636_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051636/6731_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 686737077 ERS020600 ERX028684 GENOMIC 3246340 624972450 2011-11-02 SC_RUN_6731_5#10 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051636/6731_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051540 SC_EXP_6730_8#10 229 2341832f3693852b2f241bbb920f5473 1313 34a484678e89d8b1008047aa4bfe6a2b;debf82eed0f1edf07d68d919252a5fef SAMEA1024846 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051540/ERR051540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051540/ERR051540_2.fastq.gz 2772336 WGS SMRU730-sc-2011-01-27-1060919 RANDOM 151773478;155318617 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051540/ERR051540_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051540/ERR051540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051540/6730_8#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051540/ERR051540_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051540/ERR051540_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051540/6730_8#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 391515606 ERS020240 ERX028588 GENOMIC 3100232 415850400 2011-11-02 SC_RUN_6730_8#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051540/6730_8#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051466 SC_EXP_6730_5#8 234 42feb4abce0d2f4049733c92a592770c 1313 53d92f13900af2e4337073ae5d60ccc3;c40c039099e511236b666c740d4155d8 SAMEA1024851 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051466/ERR051466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051466/ERR051466_2.fastq.gz 9939325 WGS SMRU656-sc-2011-01-27-1060845 RANDOM 576663187;608832198 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051466/ERR051466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051466/ERR051466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051466/6730_5#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051466/ERR051466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051466/ERR051466_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051466/6730_5#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1458652052 ERS020166 ERX028514 GENOMIC 3100157 1490898750 2011-11-02 SC_RUN_6730_5#8 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051466/6730_5#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR066290 SC_EXP_6983_5#19 242 d6ef58b9423788561d65d0ec4209ff06 1313 7464ddd85ddda530e5fccb6e4e17e3e9;5b911116d3a8a93bc8cabf91b4ad3f1b SAMEA1028992 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066290/ERR066290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066290/ERR066290_2.fastq.gz 3956466 WGS SMRU2323-sc-2011-01-27-1062536 RANDOM 281894954;288477757 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066290/ERR066290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066290/ERR066290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066290/6983_5#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066290/ERR066290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066290/ERR066290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066290/6983_5#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 707882079 ERS021832 ERX044153 GENOMIC 3594943 593469900 2012-03-19 SC_RUN_6983_5#19 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066290/6983_5#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057859 SC_EXP_6823_2#6 245 d2fe11d6b17dbe8046e1b79fee56b30f 1313 bbd782a0f1e1a59245ca275ae15a84ca;961942c725eb3bcdea5ae842bc9c250f SAMEA1025727 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057859/ERR057859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057859/ERR057859_2.fastq.gz 6369401 WGS SMRU1878-sc-2011-01-27-1062091 RANDOM 385253626;400392420 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057859/ERR057859_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057859/ERR057859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057859/6823_2#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057859/ERR057859_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057859/ERR057859_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057859/6823_2#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 990594891 ERS021388 ERX035705 GENOMIC 3469107 955410150 2012-03-22 SC_RUN_6823_2#6 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057859/6823_2#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056775 SC_EXP_6805_2#21 234 750272c05d70e34cc8e506d0f931f887 1313 80b7c7868e032ee836eda0f010efed81;ebcfd3c2ee57f571f199e54451ebc345 SAMEA1025491 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056775/ERR056775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056775/ERR056775_2.fastq.gz 5101786 WGS SMRU1437-sc-2011-01-27-1061650 RANDOM 274599090;290159528 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056775/ERR056775_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056775/ERR056775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056775/6805_2#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056775/ERR056775_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056775/ERR056775_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056775/6805_2#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 706853201 ERS020947 ERX034619 GENOMIC 3441195 765267900 2011-11-29 SC_RUN_6805_2#21 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056775/6805_2#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR065351 SC_EXP_6930_8#19 236 428687536cbbb13471431a29981f49b6 1313 215c094f911f9432ae1864775559af45;64214ead6a20a79b53923992ea88e87e SAMEA1032546 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065351/ERR065351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065351/ERR065351_2.fastq.gz 3447031 WGS 3025-sc-2011-08-01T09:42:37Z-1249911 RANDOM 222742292;209803131 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065351/ERR065351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065351/ERR065351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065351/6930_8#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065351/ERR065351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065351/ERR065351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065351/6930_8#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 551205816 ERS043846 ERX043324 GENOMIC 3565457 517054650 2012-01-05 SC_RUN_6930_8#19 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065351/6930_8#19.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR2305364 SC_EXP_22695_3#323 421 3c977ee31ba92f785493249011719c58;8fffa480b2d116365e6416af10129602 1313 eb94d478d5480f70d4a6a8e7adba6063;790b9309a08559286882daebc78beda0 SAMEA104035102 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305364/ERR2305364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305364/ERR2305364_2.fastq.gz 2684796 WGS 09f41b80-13c4-11e7-942b-3c4a9275d6c8 RANDOM 72312801;97235858 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305364/ERR2305364_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305364/ERR2305364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305364/22695_3#323.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305364/22695_3#323.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305364/ERR2305364_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305364/ERR2305364_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305364/22695_3#323.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305364/22695_3#323.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 124990250;4526 ERS1698995 ERX2356674 GENOMIC DN477147S:F5 405404196 2018-02-16 SC_RUN_22695_3#323 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305364/22695_3#323.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305364/22695_3#323.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809072 ERR2305266 SC_EXP_22695_3#225 431 00743b3da43dccbaf156cfafc9f8259f;6213b4d2ccb75cbb0bcbb180eac3257a 1313 82f9a54fe7df5505a706d3664145bf56;d137fd507786a8159badfe2bf5e08ee0 SAMEA104034909 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305266/ERR2305266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305266/ERR2305266_2.fastq.gz 2000380 WGS fb7a5ba0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 54272740;74191439 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305266/ERR2305266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305266/ERR2305266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305266/22695_3#225.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305266/22695_3#225.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305266/ERR2305266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305266/ERR2305266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305266/22695_3#225.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305266/22695_3#225.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 95504050;3453 ERS1698802 ERX2356576 GENOMIC DN477146R:C5 302057380 2018-02-16 SC_RUN_22695_3#225 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305266/22695_3#225.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305266/22695_3#225.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808877 ERR2305081 SC_EXP_22695_3#40 426 29c342563d24e889ba95a7e1945a6bd1;f524652d030814f0a43a8f98398990ce 1313 bea1a5cf9156393e007505ef8c22407f;78d4ad5c404522eb8377dc6616bcd2d7 SAMEA104034629 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305081/ERR2305081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305081/ERR2305081_2.fastq.gz 2372674 WGS e61a4040-13c3-11e7-942b-3c4a9275d6c8 RANDOM 64401438;85611308 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305081/ERR2305081_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305081/ERR2305081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305081/22695_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305081/22695_3#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305081/ERR2305081_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305081/ERR2305081_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305081/22695_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305081/22695_3#40.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 110771468;4023 ERS1698522 ERX2356391 GENOMIC DN477140L:H5 358273774 2018-02-16 SC_RUN_22695_3#40 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305081/22695_3#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305081/22695_3#40.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808594 ERR2089864 SC_EXP_22114_6#76 441 7e8ed5788e22f26e3f7abd9f2d670582;d64c770cb2e9db0a0e9f8a4cb0d4c75c 1313 468def5b0afe3ad17dc096508c109db6;55daa146b8419607d6c09be66b69a33d SAMEA104155053 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089864/ERR2089864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089864/ERR2089864_2.fastq.gz 2099680 WGS 90444b00-c37a-11e6-b158-3c4a9275d6c8 RANDOM 46416805;45122619 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089864/ERR2089864_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089864/ERR2089864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089864/22114_6#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089864/22114_6#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089864/ERR2089864_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089864/ERR2089864_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089864/22114_6#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089864/22114_6#76.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64073257;3518 ERS1814071 ERX2146658 GENOMIC DN478829S:D10 262460000 2017-08-08 SC_RUN_22114_6#76 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089864/22114_6#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089864/22114_6#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#76 ERR1947828 SC_EXP_21946_6#308 444 6ae09a2251ca71a351e0ace21ac7bd6b;5d313c052b45eac5995776dcb9b6b45d 1313 3554fce353274a293dc747ab23593956;13ec4f632e982520db2138292506ca4c SAMEA4561124 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947828/ERR1947828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947828/ERR1947828_2.fastq.gz 2235202 WGS 0b8d8050-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57065453;78687078 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947828/ERR1947828_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947828/ERR1947828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947828/21946_6#308.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947828/21946_6#308.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947828/ERR1947828_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947828/ERR1947828_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947828/21946_6#308.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947828/21946_6#308.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 98532684;3786 ERS1460303 ERX2013615 GENOMIC 18471561 337515502 2017-04-25 SC_RUN_21946_6#308 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947828/21946_6#308.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947828/21946_6#308.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947175 SC_EXP_21903_8#21 439 7ca2b596737d09464d659c3612631f27;29a8fc0fc2b9f83834c1e8fb5914d0da 1313 d419d903eda179a3cb3f27e59f34961d;f42a019ec5fb405928e09ea6fba0e878 SAMEA4561201 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947175/ERR1947175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947175/ERR1947175_2.fastq.gz 2133288 WGS 1316ab80-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 53564711;78627540 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947175/ERR1947175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947175/ERR1947175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947175/21903_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947175/21903_8#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947175/ERR1947175_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947175/ERR1947175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947175/21903_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947175/21903_8#21.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 97548233;3652 ERS1460380 ERX2012962 GENOMIC 18430239 322126488 2017-04-25 SC_RUN_21903_8#21 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947175/21903_8#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947175/21903_8#21.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947625 SC_EXP_21946_6#105 460 36b5c119ae6c21ced6322a962aa3317d;7f2a8d1821f4fdeb17e8f25da3ac996d 1313 8934d0b5f4b3ab2576e7de054b9e1254;2678ea9293e4d0e47b52a207f76dfe64 SAMEA17676418 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947625/ERR1947625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947625/ERR1947625_2.fastq.gz 2468992 WGS 3e5fc150-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 64214995;89742370 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947625/ERR1947625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947625/ERR1947625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947625/21946_6#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947625/21946_6#105.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947625/ERR1947625_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947625/ERR1947625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947625/21946_6#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947625/21946_6#105.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 114207964;4151 ERS1461683 ERX2013412 GENOMIC 18471473 372817792 2017-04-25 SC_RUN_21946_6#105 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947625/21946_6#105.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947625/21946_6#105.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947830 SC_EXP_21946_6#310 436 b5911593472f7744471740e5c97857f7;e1331a403168441a6d408a47ab408cb7 1313 c28966aa63f55ad4016e0d261a803dcb;7b9e7395e5e79d04b89a8c0a8446b177 SAMEA4561126 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947830/ERR1947830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947830/ERR1947830_2.fastq.gz 2377930 WGS 0b9e7040-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 60737103;84117255 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947830/ERR1947830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/000/ERR1947830/ERR1947830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947830/21946_6#310.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947830/21946_6#310.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947830/ERR1947830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/000/ERR1947830/ERR1947830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947830/21946_6#310.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947830/21946_6#310.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 105567206;4026 ERS1460305 ERX2013617 GENOMIC 18471585 359067430 2017-04-25 SC_RUN_21946_6#310 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947830/21946_6#310.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947830/21946_6#310.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1422459 SC_EXP_19084_7#130 444 348ca46b733bba24d7177e5a6b6875f4;a5fe5574b390c08691cb32f1e17e3dae 1313 d9f99879415142835efd3623704fd74d;7cfaa31a601ae11f99c560f83c355354 SAMEA3714283 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422459/ERR1422459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422459/ERR1422459_2.fastq.gz 2243194 WGS 4b074460-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 50512212;51045540 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422459/ERR1422459_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422459/ERR1422459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422459/19084_7#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422459/19084_7#130.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422459/ERR1422459_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422459/ERR1422459_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422459/19084_7#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422459/19084_7#130.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73080416;3753 ERS1021432 ERX1493041 GENOMIC 15738133 280399250 2016-05-24 SC_RUN_19084_7#130 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422459/19084_7#130.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422459/19084_7#130.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#130 ERR908896 SC_EXP_15841_1#47 206 f2c42e0724436ce7dd06184c5c7155dd;1e48f1277aa4557ab6964053c4438bfd 1313 4fab7fcebd3c0e6683dfef16b366baac;973b166a7120a0daf5c01a0ab6e68558 SAMEA3206821 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908896/ERR908896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908896/ERR908896_2.fastq.gz 5093616 WGS GPS_ZA_carriage_SP268-sc-2191755 RANDOM 159832614;164601467 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908896/ERR908896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908896/ERR908896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908896/15841_1#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908896/15841_1#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908896/ERR908896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908896/ERR908896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908896/15841_1#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908896/15841_1#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260783105;8132 ERS638831 ERX988151 GENOMIC 13227514 509361600 2015-06-09 SC_RUN_15841_1#47 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908896/15841_1#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908896/15841_1#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#47 ERR714488 SC_EXP_14410_8#46 224 889e8327105483d5514b893e70745ebc;7b0a926fdf58fa37d82c5f5c30ae78e4 1313 f5614413406a6474a02840f23a170a69;3ff1b829ce332c8af94a452b2a4adc5c SAMEA2658429 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714488/ERR714488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714488/ERR714488_2.fastq.gz 5168380 WGS GPS_ZA_1518-sc-2021034 RANDOM 182573756;183642657 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714488/ERR714488_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714488/ERR714488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714488/14410_8#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714488/14410_8#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714488/ERR714488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714488/ERR714488_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714488/14410_8#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714488/14410_8#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 303106702;8451 ERS508457 ERX658410 GENOMIC 11883117 516838000 2015-01-08 SC_RUN_14410_8#46 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714488/14410_8#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714488/14410_8#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_8#46 ERR701810 SC_EXP_14257_1#33 234 980988c1421f01a246f019fe55809d48;1b43b0ff818965074112298b70ace4b7 1313 928ec4ff185d4ee106fd3ebf85759e9b;8de567d2f92bd325353ff3d3f46bed27 SAMEA2658361 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701810/ERR701810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701810/ERR701810_2.fastq.gz 5164258 WGS GPS_ZA_1410-sc-2020966 RANDOM 164346957;168414802 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701810/ERR701810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701810/ERR701810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701810/14257_1#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701810/14257_1#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701810/ERR701810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701810/ERR701810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701810/14257_1#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701810/14257_1#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274073132;8399 ERS508389 ERX646073 GENOMIC 11814710 516425800 2014-12-16 SC_RUN_14257_1#33 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701810/14257_1#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701810/14257_1#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#33 ERR870270 SC_EXP_15531_6#78 212 bfa42c865ee67f19e0d8bc4950735122;ef34f377d7603f9a7e7b0f0bbe9844f2 1313 c27dbf8cb38e71692196c58b49e85607;5c47fc278afa5baef87c43555e42e635 SAMEA3173021 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870270/ERR870270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870270/ERR870270_2.fastq.gz 5287664 WGS GPS_GM_1165-sc-2190580 RANDOM 203098382;191866899 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870270/ERR870270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870270/ERR870270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870270/15531_6#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870270/15531_6#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870270/ERR870270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870270/ERR870270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870270/15531_6#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870270/15531_6#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 328017430;8524 ERS627264 ERX949871 GENOMIC 12870085 528766400 2015-05-06 SC_RUN_15531_6#78 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870270/15531_6#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870270/15531_6#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_6#78 ERR633084 SC_EXP_13415_8#62 232 f234fb7c1f9ff8b77aca283de6d642f4;7d43ce8a1e7b4f02dc868282ba7bc1ff 1313 f4604288101bf52f2045975dd3d03d7d;cd3d21e2807f856bd2ab24592a601022 SAMEA2554269 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633084/ERR633084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633084/ERR633084_2.fastq.gz 5049930 WGS GPS_ZA_1158-sc-1951307 RANDOM 171397385;176847350 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633084/ERR633084_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633084/ERR633084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633084/13415_8#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633084/13415_8#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633084/ERR633084_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633084/ERR633084_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633084/13415_8#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633084/13415_8#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 287702863;8125 ERS464770 ERX589638 GENOMIC 10663373 504993000 2014-09-23 SC_RUN_13415_8#62 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633084/13415_8#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633084/13415_8#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#62 ERR559429 SC_EXP_12718_5#68 231 73dce3d3f6e1b2576de97fc0b15a6c38;914c91f35c6731345b7ef47ef1e12a20 1313 c54ebd8ef7e2ef1be403e3648e03ffb8;5a551de4cf6c56339abf1cf8325d85c3 SAMEA2382898 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559429/ERR559429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559429/ERR559429_2.fastq.gz 4423486 WGS 2070986_II-sc-1870146 RANDOM 138840813;144546487 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559429/ERR559429_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559429/ERR559429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559429/12718_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559429/12718_5#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559429/ERR559429_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559429/ERR559429_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559429/12718_5#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559429/12718_5#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 233290931;7206 ERS409223 ERX518465 GENOMIC 9918409 442348600 2014-07-10 SC_RUN_12718_5#68 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559429/12718_5#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559429/12718_5#68.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#68 ERR600164 SC_EXP_13414_2#25 233 ef7b4aec7d3d0d0b8b87ebebc361a496;ef93c2604fd24901ceb64971abd56793 1313 d1dae8d14807742f5036c14454296f6a;500b0f16c8086fc32a35efd8adacb9e0 SAMEA2521576 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600164/ERR600164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600164/ERR600164_2.fastq.gz 5692720 WGS 2012215830-sc-1946868 RANDOM 206068809;208974963 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600164/ERR600164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600164/ERR600164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600164/13414_2#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600164/13414_2#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600164/ERR600164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600164/ERR600164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600164/13414_2#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600164/13414_2#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 342214623;8547 ERS455116 ERX556993 GENOMIC 10600497 569272000 2014-09-16 SC_RUN_13414_2#25 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600164/13414_2#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600164/13414_2#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#25 ERR586313 SC_EXP_13154_2#14 246 07f5b8351eafeef4fa3243a55dee7b02;17a4c51460e458998eeb1ec5ee780e3d 1313 e6aaaede8df139f4cbf279dbbc24b5a2;76b70c7ab7421c79569b0f3029b8b7c0 SAMEA2467511 2014-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586313/ERR586313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586313/ERR586313_2.fastq.gz 3918296 WGS PATH3564-sc-1926296 RANDOM 122335267;127546477 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586313/ERR586313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR586/ERR586313/ERR586313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586313/13154_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586313/13154_2#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586313/ERR586313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR586/ERR586313/ERR586313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586313/13154_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR586/ERR586313/13154_2#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 203712538;6428 ERS437268 ERX544321 GENOMIC 10222465 391829600 2014-08-27 SC_RUN_13154_2#14 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586313/13154_2#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR586/ERR586313/13154_2#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA352202 13154_2#14 ERR501472 SC_EXP_12290_2#13 221 49338ffa0db322679642526063f4ef07;b71a32aa64fbc3601303bd5f70b8e792 1313 e09e1bed3044f006ecb391472033798b;657de3909d197d98e6f7d04bcedfcbe5 SAMEA2336215 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501472/ERR501472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501472/ERR501472_2.fastq.gz 4311186 WGS 2010216083-sc-1811147 RANDOM 128875077;136511868 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501472/ERR501472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501472/ERR501472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501472/12290_2#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501472/12290_2#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501472/ERR501472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501472/ERR501472_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501472/12290_2#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501472/12290_2#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 215771002;7080 ERS394409 ERX466829 GENOMIC 9467326 431118600 2014-05-12 SC_RUN_12290_2#13 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501472/12290_2#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501472/12290_2#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_2#13 ERR461239 SC_EXP_11860_7#50 206 e5217c0bdc46afd827be015e18068090;d637d39ee66d5f95560b802d4d6e4adb 1313 9ba815393f10748b1e1e9959faeb24bb;a8dc3c2c604d513311c1a0550a498b0d SAMEA2239089 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461239/ERR461239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461239/ERR461239_2.fastq.gz 3743674 WGS 991882-sc-2013-11-05T12:07:44Z-1750459 RANDOM 123083811;129135489 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461239/ERR461239_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461239/ERR461239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461239/11860_7#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461239/11860_7#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461239/ERR461239_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461239/ERR461239_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461239/11860_7#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461239/11860_7#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 207183005;6052 ERS367901 ERX427580 GENOMIC 9014894 374367400 2014-03-18 SC_RUN_11860_7#50 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461239/11860_7#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461239/11860_7#50.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#50 ERR461203 SC_EXP_11860_7#12 206 9197d9e7e2a174b8436303c4e3d85ff5;2d06ca935eeae50823411867c4305ab5 1313 626131f2183a182847410543a361adfa;006f4bf68274229a18b439c3e8aff7c8 SAMEA2239053 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461203/ERR461203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461203/ERR461203_2.fastq.gz 4016460 WGS 990812-sc-2013-11-05T12:07:09Z-1750422 RANDOM 129988249;137107318 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461203/ERR461203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461203/ERR461203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461203/11860_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461203/11860_7#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461203/ERR461203_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461203/ERR461203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461203/11860_7#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461203/11860_7#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 219785733;6595 ERS367865 ERX427544 GENOMIC 9014913 401646000 2014-03-18 SC_RUN_11860_7#12 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461203/11860_7#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461203/11860_7#12.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#12 ERR461521 SC_EXP_11861_2#56 216 5d2c0e22f6b86848b83607348ebedab6;b135d30573db94a4a7b8e0c6184fa47b 1313 936d679de78318d15aca1924df0680ed;b6d0e22dadd750fec33c7bdb493324c9 SAMEA2238716 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461521/ERR461521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461521/ERR461521_2.fastq.gz 4489264 WGS 2094095-sc-2013-11-05T12:01:13Z-1750078 RANDOM 148007751;155044245 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461521/ERR461521_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461521/ERR461521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461521/11861_2#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461521/11861_2#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461521/ERR461521_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461521/ERR461521_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461521/11861_2#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461521/11861_2#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 247479180;7143 ERS367528 ERX427862 GENOMIC 9020944 448926400 2014-03-18 SC_RUN_11861_2#56 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461521/11861_2#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461521/11861_2#56.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#56 ERR433860 SC_EXP_11658_2#3 231 de816001976f5f1a8a68f12415b3650d;a2d6acc1576d72e931b02d5b3c5c4748 1313 1f099089d7e13422dc2c5ed10bc8dfb1;8a0cd7efcf44ba8061e055f2dab47681 SAMEA2204203 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433860/ERR433860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433860/ERR433860_2.fastq.gz 3706790 WGS PATH5914-sc-2013-10-09T11:57:13Z-1712796 RANDOM 125198441;128306119 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433860/ERR433860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433860/ERR433860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433860/11658_2#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433860/11658_2#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433860/ERR433860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433860/ERR433860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433860/11658_2#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433860/11658_2#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 206969658;5943 ERS356714 ERX400135 GENOMIC 8593327 370679000 2014-02-18 SC_RUN_11658_2#3 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433860/11658_2#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433860/11658_2#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#3 ERR433825 SC_EXP_11658_1#59 235 b46ed50b7dd5ffbea0da6202ae607f63;6af9d42c75c3d96c8cfee5e028934bf3 1313 13b1c63df464f8b6ebcc369f80140e6c;2fdd16cfa0a57478a718b14d84bfc29a SAMEA2203323 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433825/ERR433825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433825/ERR433825_2.fastq.gz 4616272 WGS PI0172-sc-2013-10-09T11:40:45Z-1708813 RANDOM 143420601;149311510 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433825/ERR433825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433825/ERR433825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433825/11658_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433825/11658_1#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433825/ERR433825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433825/ERR433825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433825/11658_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433825/11658_1#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 237243843;7392 ERS355827 ERX400100 GENOMIC 8640073 461627200 2014-02-18 SC_RUN_11658_1#59 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433825/11658_1#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433825/11658_1#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_1#59 ERR340848 SC_EXP_10208_2#32 215 4e91dce2e7697ea3e85fd114047dae26 1313 109c9ff0d8f483f62197021984f62d0b;efaaae5369b3274bb638486bbf457c0f SAMEA2059424 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340848/ERR340848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340848/ERR340848_2.fastq.gz 2975493 WGS PBCN0431-sc-2013-03-27T13:21:05Z-1603744 RANDOM 199472921;226497949 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340848/ERR340848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340848/ERR340848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340848/10208_2#32.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340848/ERR340848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340848/ERR340848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340848/10208_2#32.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 579776342 ERS225877 ERX313697 GENOMIC 7400664 595098600 2013-09-16 SC_RUN_10208_2#32 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340848/10208_2#32.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#32 ERR047912 SC_EXP_6593_4#19 238 f963dfbee64973758fc3187947b0b3e2 1313 f2df44831c1ba631ed79078b7def2435;1d6b09a489e8288d9ac4e38ca7437da6 SAMEA1024058 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047912/ERR047912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047912/ERR047912_2.fastq.gz 6300868 WGS SMRU115-sc-2011-01-27-1060304 RANDOM 382689122;406595298 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047912/ERR047912_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047912/ERR047912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047912/6593_4#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047912/ERR047912_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047912/ERR047912_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047912/6593_4#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 966062213 ERS019273 ERX024975 GENOMIC 2882494 945130200 2011-10-11 SC_RUN_6593_4#19 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047912/6593_4#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047904 SC_EXP_6593_4#11 238 b66575fed0cb2a90325e6548ae69299a 1313 f8dba4f4938bb2a3325db35cde11adf0;143e9083fd9031658481c5ec82dd19f4 SAMEA1024183 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047904/ERR047904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047904/ERR047904_2.fastq.gz 9886431 WGS SMRU107-sc-2011-01-27-1060296 RANDOM 579165097;622496896 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047904/ERR047904_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047904/ERR047904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047904/6593_4#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047904/ERR047904_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047904/ERR047904_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047904/6593_4#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1534168698 ERS019265 ERX024967 GENOMIC 2882486 1482964650 2011-10-11 SC_RUN_6593_4#11 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047904/6593_4#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR047942 SC_EXP_6630_1#1 215 d5a03116b9709761cba8f056df60435a 1313 6607b14350638baf71c85b1857f0e1af;e7dfedb93ed750d9e8a16821a1301916 SAMEA1024015 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047942/ERR047942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047942/ERR047942_2.fastq.gz 3592250 WGS SMRU265-sc-2011-01-27-1060454 RANDOM 206062926;207447953 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047942/ERR047942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR047/ERR047942/ERR047942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047942/6630_1#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047942/ERR047942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR047/ERR047942/ERR047942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR047/ERR047942/6630_1#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 536038204 ERS019423 ERX025005 GENOMIC 2952052 538837500 2011-10-11 SC_RUN_6630_1#1 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR047/ERR047942/6630_1#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR048082 SC_EXP_6631_2#21 205 d5dbb671ec50d9880cf1bf5f458bf883 1313 292f5c514b4603d0ed640a4068cd0907;105825abf8d4bf15f60d190fad703944 SAMEA1023922 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048082/ERR048082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048082/ERR048082_2.fastq.gz 4865927 WGS SMRU357-sc-2011-01-27-1060546 RANDOM 285932760;285800079 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048082/ERR048082_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048082/ERR048082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048082/6631_2#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048082/ERR048082_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048082/ERR048082_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048082/6631_2#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 713053236 ERS019515 ERX025145 GENOMIC 2952144 729889050 2011-10-11 SC_RUN_6631_2#21 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048082/6631_2#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054651 SC_EXP_6755_6#23 249 0e5e608529e9e8af5aa2dc50e26b5b16 1313 a7c83c6a06d08dd98c10f636af0ec4e4;55f3f158dfc0e9a2fe36baf77a5e4156 SAMEA1025461 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054651/ERR054651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054651/ERR054651_2.fastq.gz 8152780 WGS SMRU1200-sc-2011-01-27-1061413 RANDOM 433946927;456320856 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054651/ERR054651_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054651/ERR054651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054651/6755_6#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054651/ERR054651_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054651/ERR054651_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054651/6755_6#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1131121485 ERS020710 ERX031697 GENOMIC 3308047 1222917000 2011-11-15 SC_RUN_6755_6#23 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054651/6755_6#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054610 SC_EXP_6755_5#6 248 168f65928d5f1e2a412254654fbeefb4 1313 66b43621923ca948882b105a3a9a45ee;90e48379b33366489824154490352ec9 SAMEA1025369 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054610/ERR054610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054610/ERR054610_2.fastq.gz 6837789 WGS SMRU1158-sc-2011-01-27-1061371 RANDOM 369535974;386804069 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054610/ERR054610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054610/ERR054610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054610/6755_5#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054610/ERR054610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054610/ERR054610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054610/6755_5#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 959016583 ERS020668 ERX031656 GENOMIC 3307618 1025668350 2011-11-15 SC_RUN_6755_5#6 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054610/6755_5#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054553 SC_EXP_6755_2#21 204 dae5df6962f65391236b645e27899c65 1313 e4ade786b350f4cd99668ad91abff3c4;1bcc0804e884e0b0840a147dd0dd5b44 SAMEA1024607 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054553/ERR054553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054553/ERR054553_2.fastq.gz 3679509 WGS SMRU813-sc-2011-01-27-1061002 RANDOM 173899124;177814073 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054553/ERR054553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054553/ERR054553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054553/6755_2#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054553/ERR054553_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054553/ERR054553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054553/6755_2#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 457475095 ERS020323 ERX031599 GENOMIC 3152322 551926350 2011-11-15 SC_RUN_6755_2#21 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054553/6755_2#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054499 SC_EXP_6753_4#15 212 9cc49341378e2828a9b9ad4d1169a780 1313 7638d75e3ae0fde06b0c31f62010cfcd;2ae0eb4bcb7bac7ac74ce654962abd5d SAMEA1025259 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054499/ERR054499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054499/ERR054499_2.fastq.gz 5033440 WGS SMRU1551-sc-2011-01-27-1061764 RANDOM 329774140;349402246 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054499/ERR054499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054499/ERR054499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054499/6753_4#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054499/ERR054499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054499/ERR054499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054499/6753_4#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 868639271 ERS021061 ERX031545 GENOMIC 3414237 755016000 2011-11-15 SC_RUN_6753_4#15 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054499/6753_4#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR069710 SC_EXP_6999_2#5 244 acdb739dc7428a1031abd25342725359 1313 4ac7dec93e3b60be48361517497aeb91;7cbb8cc4e9ab5fd331e0c1c4b72c31cb SAMEA1032456 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069710/ERR069710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069710/ERR069710_2.fastq.gz 4462814 WGS 3211-sc-2011-08-01T09:44:42Z-1250081 RANDOM 254630133;254482832 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069710/ERR069710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069710/ERR069710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069710/6999_2#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069710/ERR069710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069710/ERR069710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069710/6999_2#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 655290820 ERS044016 ERX047563 GENOMIC 3736930 669422100 2012-01-19 SC_RUN_6999_2#5 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069710/6999_2#5.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR068020 SC_EXP_7001_2#15 224 cbb975c69b2b7c06f6599dba6f473783 1313 c682f90a9c5f627138964b1c481505bc;986c2509442bac744a9739ee65ace3b4 SAMEA1032555 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068020/ERR068020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068020/ERR068020_2.fastq.gz 4150924 WGS 3120-sc-2011-08-01T09:43:44Z-1249999 RANDOM 237601009;244474304 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068020/ERR068020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068020/ERR068020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068020/7001_2#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068020/ERR068020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068020/ERR068020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068020/7001_2#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 617397770 ERS043934 ERX045883 GENOMIC 3758183 622638600 2012-01-16 SC_RUN_7001_2#15 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068020/7001_2#15.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR068018 SC_EXP_7001_2#13 224 237f47ef7ae30188886b25ef1254ae66 1313 279920e95b3b350812a625c758724462;46f05b7e5afa55d573853ed74db0d3e2 SAMEA1032516 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068018/ERR068018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068018/ERR068018_2.fastq.gz 4787730 WGS 3118-sc-2011-08-01T09:43:43Z-1249997 RANDOM 274425247;282209698 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068018/ERR068018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068018/ERR068018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068018/7001_2#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068018/ERR068018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068018/ERR068018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068018/7001_2#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 712954382 ERS043932 ERX045881 GENOMIC 3758181 718159500 2012-01-16 SC_RUN_7001_2#13 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068018/7001_2#13.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR052588 SC_EXP_6673_8#11 221 7ca378d7f4ddea28014f14a477305950 1313 a8cf3a0c2e1aefa9d55208c7c2ceb237;1be5a9c8db3ae948b10654c8374bbd2f SAMEA1023666 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052588/ERR052588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052588/ERR052588_2.fastq.gz 6763356 WGS SMRU251-sc-2011-01-27-1060440 RANDOM 371411637;397724671 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052588/ERR052588_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052588/ERR052588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052588/6673_8#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052588/ERR052588_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052588/ERR052588_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052588/6673_8#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 983008201 ERS019409 ERX029636 GENOMIC 2950589 1014503400 2011-11-07 SC_RUN_6673_8#11 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052588/6673_8#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA065592 Streptococcus pneumoniae Streptococcus pneumoniae ERR066183 SC_EXP_6938_5#8 230 29e0a62360f015aa85d11a2892048fce 1313 0441db4231767eb4151f52fc7fc7d537;3355f4c356f901ed15563604ba8f330c SAMEA1028607 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066183/ERR066183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066183/ERR066183_2.fastq.gz 6608875 WGS SMRU2648-sc-2011-01-27-1062861 RANDOM 458853721;471084416 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066183/ERR066183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066183/ERR066183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066183/6938_5#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066183/ERR066183_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066183/ERR066183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066183/6938_5#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1162258640 ERS022158 ERX044046 GENOMIC 3651668 991331250 2012-03-19 SC_RUN_6938_5#8 63 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066183/6938_5#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR049101 SC_EXP_6641_6#23 219 fe59f69cedecccf5202ffeaaa4c062d5 1313 a124381ed9ac97d2e114df2a4217248c;6f04a3e75c3d59a0e39248af090b87f8 SAMEA1023984 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049101/ERR049101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049101/ERR049101_2.fastq.gz 11229645 WGS SMRU167-sc-2011-01-27-1060356 RANDOM 743037174;763410492 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049101/ERR049101_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049101/ERR049101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049101/6641_6#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049101/ERR049101_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049101/ERR049101_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049101/6641_6#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1916783021 ERS019325 ERX026168 GENOMIC 3040294 1684446750 2011-10-18 SC_RUN_6641_6#23 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049101/6641_6#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR046202 SC_EXP_6512_7#15 241 4bc88c8449548f9b3d3f3a33e15b0296 1313 68924055c2f674dfc8b4b988f6c3e1d5;2770066ce01aab33162903e360393e8d SAMEA1026748 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046202/ERR046202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046202/ERR046202_2.fastq.gz 3800866 WGS UoS4242-sc-2011-02-14-1078431 RANDOM 204539947;204102603 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046202/ERR046202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046202/ERR046202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046202/6512_7#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046202/ERR046202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046202/ERR046202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046202/6512_7#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 515049695 ERS023377 ERX023264 GENOMIC 2735157 570129900 2011-09-20 SC_RUN_6512_7#15 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046202/6512_7#15.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_7#15 ERR046192 SC_EXP_6512_7#5 241 f2213f6bf40cf53580f4331ab286333a 1313 e1de653c171c67964ab5f2565eb4a10b;df6f9dd04782842ed330d028eb9c7f10 SAMEA1026670 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046192/ERR046192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046192/ERR046192_2.fastq.gz 8657404 WGS UoS4187-sc-2011-02-14-1078421 RANDOM 457776074;455944730 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046192/ERR046192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046192/ERR046192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046192/6512_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046192/ERR046192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046192/ERR046192_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046192/6512_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1145170365 ERS023367 ERX023254 GENOMIC 2735147 1298610600 2011-09-20 SC_RUN_6512_7#5 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046192/6512_7#5.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_7#5 ERR046167 SC_EXP_6512_6#2 236 bd68eeee4344e4a3547c5dde3a907b2e 1313 f0c8f80b4b45397cc8245f62512fcdf2;2eaed18b4d2bd76d36db243fac97094a SAMEA1026371 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046167/ERR046167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046167/ERR046167_2.fastq.gz 5521519 WGS UoS4087-sc-2011-02-14-1078396 RANDOM 297766466;288813523 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046167/ERR046167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046167/ERR046167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046167/6512_6#2.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046167/ERR046167_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046167/ERR046167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046167/6512_6#2.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 744160718 ERS023342 ERX023229 GENOMIC 2735079 828227850 2011-09-20 SC_RUN_6512_6#2 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046167/6512_6#2.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_6#2 ERR046056 SC_EXP_6512_1#9 204 39bd7debf0c08d6d8b51266ee35187ce 1313 b9b3e14f0ad729bc99ddfa8b4683e288;a1a9af2deca605d29e5ade7aacf23b1a SAMEA1026606 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046056/ERR046056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046056/ERR046056_2.fastq.gz 6687551 WGS UoS3038-sc-2011-02-14-1078285 RANDOM 379436521;384733726 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046056/ERR046056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046056/ERR046056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046056/6512_1#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046056/ERR046056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046056/ERR046056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046056/6512_1#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 957898190 ERS023231 ERX023118 GENOMIC 2734210 1003132650 2011-09-20 SC_RUN_6512_1#9 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046056/6512_1#9.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_1#9 ERR044969 SC_EXP_6472_5#16 250 240445511df254e6d10c635b1274cec0 1313 8d9e50ee540fb942e2611ad70c640a45;0de5a736788896e02187b8d3cdfba27d SAMEA1026559 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044969/ERR044969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044969/ERR044969_2.fastq.gz 7757360 WGS UoS2021-sc-2011-02-14-1078172 RANDOM 388187980;397722453 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044969/ERR044969_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044969/ERR044969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044969/6472_5#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044969/ERR044969_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044969/ERR044969_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044969/6472_5#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 979661027 ERS023118 ERX022077 GENOMIC 2732340 1163604000 2011-09-06 SC_RUN_6472_5#16 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044969/6472_5#16.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_5#16 ERR046153 SC_EXP_6512_5#10 242 737f659b53364b28710f2ae24df02b72 1313 ece3eee8fa7ed4c5440d25e353215405;0dda19478b7cffbc64f036c41ec53953 SAMEA1026598 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046153/ERR046153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046153/ERR046153_2.fastq.gz 5102920 WGS UoS4032-sc-2011-02-14-1078382 RANDOM 273740992;271406699 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046153/ERR046153_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046153/ERR046153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046153/6512_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046153/ERR046153_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046153/ERR046153_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046153/6512_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 692980064 ERS023328 ERX023215 GENOMIC 2735031 765438000 2011-09-20 SC_RUN_6512_5#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046153/6512_5#10.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_5#10 ERR044962 SC_EXP_6472_5#9 250 0d136803b143c98174035bd421fce1b8 1313 3bd4959526f737e58f9a032e9402af86;22be7a57bfaf41fd86f157e9d4c7b7bf SAMEA1026646 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044962/ERR044962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044962/ERR044962_2.fastq.gz 7234138 WGS UoS2001-sc-2011-02-14-1078165 RANDOM 361261038;369075985 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044962/ERR044962_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044962/ERR044962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044962/6472_5#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044962/ERR044962_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044962/ERR044962_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044962/6472_5#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 912177094 ERS023111 ERX022070 GENOMIC 2732333 1085120700 2011-09-06 SC_RUN_6472_5#9 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044962/6472_5#9.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_5#9 ERR044869 SC_EXP_6470_3#12 187 cb0b43364ce9ed6efbbaaa8e097f1f63 1313 d8e200cd9edc34470b0b7debd07f2512;c95ea6b21806d9e7d1a56724af8e4558 SAMEA1026647 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044869/ERR044869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044869/ERR044869_2.fastq.gz 6519100 WGS UoS0050-sc-2011-02-14-1078072 RANDOM 324074445;339483132 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044869/ERR044869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044869/ERR044869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044869/6470_3#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044869/ERR044869_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044869/ERR044869_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044869/6470_3#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 866741144 ERS023017 ERX021977 GENOMIC 2719099 977865000 2011-09-06 SC_RUN_6470_3#12 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044869/6470_3#12.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#12 ERR044986 SC_EXP_6472_6#9 244 c4a4b0cab880a420c5fc3c6fa34f5710 1313 ca1cf2370900d03ec0575c6a8a1acbda;5c507fdb8694b0016565615f19f1e6eb SAMEA1026367 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044986/ERR044986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044986/ERR044986_2.fastq.gz 5210395 WGS UoS2063-sc-2011-02-14-1078189 RANDOM 251156843;251648597 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044986/ERR044986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044986/ERR044986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044986/6472_6#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044986/ERR044986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044986/ERR044986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044986/6472_6#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 652091536 ERS023135 ERX022094 GENOMIC 2732357 781559250 2011-09-06 SC_RUN_6472_6#9 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044986/6472_6#9.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_6#9 ERR039646 SC_EXP_6259_8#15 183 bc20e06bc382936ba2dbcdac48d3a6fb 1313 5699bf42bc4961b8200cf008423ae63e;1e8050c0d1bb5b9dffb800a99a2fbadd SAMEA974651 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039646/ERR039646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039646/ERR039646_2.fastq.gz 4450476 WGS SMRU87-sc-2011-01-27-1026512 RANDOM 230356509;238434359 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039646/ERR039646_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039646/ERR039646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039646/6259_8#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039646/ERR039646_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039646/ERR039646_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039646/6259_8#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 598221569 ERS019245 ERX016819 GENOMIC 2591017 667571400 2011-07-27 SC_RUN_6259_8#15 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039646/6259_8#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2090423 SC_EXP_22667_7#151 432 f28880fce942f612b75561a23d5cb84a;b3896d10a1ee7334bbc47839037cd2cd 1313 3366cd33fabce22fa90170d75d5b8ebe;04907321c54dae1cccf0a445f5f15433 SAMEA104035149 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090423/ERR2090423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090423/ERR2090423_2.fastq.gz 2984214 WGS 8805b490-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58471768;62534048 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090423/ERR2090423_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090423/ERR2090423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090423/22667_7#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090423/22667_7#151.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090423/ERR2090423_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090423/ERR2090423_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090423/22667_7#151.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090423/22667_7#151.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84985168;4916 ERS1699042 ERX2147217 GENOMIC DN486303N:G7 373026750 2017-08-08 SC_RUN_22667_7#151 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090423/22667_7#151.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090423/22667_7#151.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#151 ERR2089550 SC_EXP_21999_8#105 469 d00be0bf5518a08bfeadbfbfba4e88c8;28727ef77f0c2c255694004adb886686 1313 e79d168587b12fb4e45df091b7252653;372f08fb0485b12a993fb828f85ca438 SAMEA104154816 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089550/ERR2089550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089550/ERR2089550_2.fastq.gz 1698880 WGS 7a117650-c37a-11e6-b158-3c4a9275d6c8 RANDOM 33097109;35276179 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089550/ERR2089550_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089550/ERR2089550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089550/21999_8#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089550/21999_8#105.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089550/ERR2089550_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089550/ERR2089550_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089550/21999_8#105.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089550/21999_8#105.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 46420491;2873 ERS1813834 ERX2146344 GENOMIC DN476960M:A3 212360000 2017-08-08 SC_RUN_21999_8#105 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089550/21999_8#105.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089550/21999_8#105.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#105 ERR2089399 SC_EXP_21999_7#137 467 3ec03c0f152c4be0b2b1ee33cac3f5d1;99b1ff5ff92cff11f0fde40e0061ffcc 1313 3227790fc6d81db54ef522fac406a6d7;abd4d5158868758c8e7f0d08c8f441fd SAMEA104154663 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089399/ERR2089399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089399/ERR2089399_2.fastq.gz 2507590 WGS 670b5080-c37a-11e6-b158-3c4a9275d6c8 RANDOM 51324366;56528555 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089399/ERR2089399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089399/ERR2089399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089399/21999_7#137.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089399/21999_7#137.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089399/ERR2089399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089399/ERR2089399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089399/21999_7#137.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089399/21999_7#137.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76225849;4155 ERS1813681 ERX2146193 GENOMIC DN476874P:B6 313448750 2017-08-08 SC_RUN_21999_7#137 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089399/21999_7#137.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089399/21999_7#137.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#137 ERR1453701 SC_EXP_19341_3#53 441 186ed5d55fe8da05a709378a808d3628;3735ed79f5d7e7452e91251adb197cdc 1313 68054ab531641e5ceed659a4ade138b9;3f658d5a6f373158cfad46794df343dc SAMEA3714014 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453701/ERR1453701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453701/ERR1453701_2.fastq.gz 2136642 WGS 3a990780-41bd-11e5-998e-3c4a9275d6c6 RANDOM 44786700;48851008 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453701/ERR1453701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/001/ERR1453701/ERR1453701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453701/19341_3#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453701/19341_3#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453701/ERR1453701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/001/ERR1453701/ERR1453701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453701/19341_3#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453701/19341_3#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67130158;3643 ERS1021163 ERX1524179 GENOMIC 16008468 267080250 2016-06-14 SC_RUN_19341_3#53 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453701/19341_3#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453701/19341_3#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#53 ERR1947868 SC_EXP_21946_6#348 446 820fb6585106704a88a6ce03e7854054;7e21710e252ca8978a15c73013c9db82 1313 fea17bc9950a5cf22245ca927d7f8bac;f86f5980e1fcb3c7a0368c8c9a9a1e87 SAMEA4561164 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947868/ERR1947868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947868/ERR1947868_2.fastq.gz 2013250 WGS 11dbe190-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 51735784;71064449 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947868/ERR1947868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1947868/ERR1947868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947868/21946_6#348.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947868/21946_6#348.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947868/ERR1947868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/008/ERR1947868/ERR1947868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947868/21946_6#348.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947868/21946_6#348.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 89673498;3460 ERS1460343 ERX2013655 GENOMIC 18471566 304000750 2017-04-25 SC_RUN_21946_6#348 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947868/21946_6#348.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947868/21946_6#348.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1214410 SC_EXP_18090_1#90 448 85ee48b714d923fc24dad24b32e73eab;6bd779fa120104cae8dbf77263cc2626 1313 1a80333a57675368ad8f6cf25222eda7;ce13b12125052d42063d0949627a1483 SAMEA3431348 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214410/ERR1214410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214410/ERR1214410_2.fastq.gz 2974852 WGS GPS_US_PATH402-sc-2296520 RANDOM 61345474;64494139 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214410/ERR1214410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214410/ERR1214410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214410/18090_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214410/18090_1#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214410/ERR1214410_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214410/ERR1214410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214410/18090_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214410/18090_1#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89551412;4844 ERS740633 ERX1286623 GENOMIC 15034935 371856500 2016-01-19 SC_RUN_18090_1#90 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214410/18090_1#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214410/18090_1#90.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#90 ERR1202463 SC_EXP_17966_5#13 464 3352ca0ad501423b220aca6b9d9437df;07af22e9cf4d29f625e03d27009573fe 1313 8781189dfd097765426ce74b17094cd4;10a08362a51df08a66c6a4ebcd67562f SAMEA3390036 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202463/ERR1202463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202463/ERR1202463_2.fastq.gz 2011096 WGS GPS_MW_BQN1S8-sc-2296281 RANDOM 35418769;36095989 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202463/ERR1202463_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/003/ERR1202463/ERR1202463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202463/17966_5#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202463/17966_5#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202463/ERR1202463_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/003/ERR1202463/ERR1202463_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202463/17966_5#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202463/17966_5#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 50430577;3414 ERS726139 ERX1274705 GENOMIC 15025504 251387000 2016-01-12 SC_RUN_17966_5#13 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202463/17966_5#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202463/17966_5#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#13 ERR1065590 SC_EXP_17138_5#16 500 2b3a29c87b48f4ba07b7b54c5de27dbb;814de5dbbae308b6e12425b3d6c362ef 1313 87360121c1fdd76098b93e026104b975;32540e5f18752659b14a489bb978afed SAMEA3232608 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065590/ERR1065590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065590/ERR1065590_2.fastq.gz 7966392 WGS GPS_NP_3414-sc-2205526 RANDOM 159826026;153546026 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065590/ERR1065590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065590/ERR1065590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065590/17138_5#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065590/17138_5#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065590/ERR1065590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065590/ERR1065590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065590/17138_5#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065590/17138_5#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248738487;13198 ERS653819 ERX1145740 GENOMIC 14451912 995799000 2015-10-13 SC_RUN_17138_5#16 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065590/17138_5#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065590/17138_5#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#16 ERR1192066 SC_EXP_17794_8#55 441 37743eb33cfe66796fb1f9d874307b68;8d2266422b9fb22b2e9ea1c7aaf842f1 1313 950e1b54d2c1fb9732989e7cd7487cc9;79152d493fe4822c6cdbcb7b7fe1c44b SAMEA3381590 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192066/ERR1192066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192066/ERR1192066_2.fastq.gz 2385260 WGS GPS_GM_2101-sc-2279469 RANDOM 49132294;48475772 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192066/ERR1192066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1192066/ERR1192066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192066/17794_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192066/17794_8#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192066/ERR1192066_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1192066/ERR1192066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192066/17794_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192066/17794_8#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75494344;3905 ERS719849 ERX1265450 GENOMIC 14941609 298157500 2015-12-17 SC_RUN_17794_8#55 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192066/17794_8#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192066/17794_8#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#55 ERR979985 SC_EXP_16288_4#29 217 f9fc4b426a38c5a2e057b5671a68f03e;c867b394b3bf772dc300c63efca7b048 1313 42af0628ce9f90641e8207016606a283;73c76219c36b80adf73847611d09515f SAMEA3232455 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979985/ERR979985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979985/ERR979985_2.fastq.gz 4747056 WGS GPS_NP_2335-sc-2205373 RANDOM 171574126;167754995 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979985/ERR979985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979985/ERR979985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979985/16288_4#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979985/16288_4#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979985/ERR979985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979985/ERR979985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979985/16288_4#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979985/16288_4#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 274218031;7460 ERS653666 ERX1056857 GENOMIC 13296284 474705600 2015-08-12 SC_RUN_16288_4#29 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979985/16288_4#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979985/16288_4#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#29 ERR980258 SC_EXP_16288_7#67 201 773501468521a90fedac516a42dac89c;6b1d79330ac278bf4423c825f33fa96c 1313 1b0ca514c900c8eadc589ebc6a4f289b;fed4c70854cde44ddd31624c74fed2ca SAMEA3232742 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980258/ERR980258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980258/ERR980258_2.fastq.gz 5540816 WGS GPS_NP_1204-sc-2205662 RANDOM 185722643;181604472 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980258/ERR980258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980258/ERR980258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980258/16288_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980258/16288_7#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980258/ERR980258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980258/ERR980258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980258/16288_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980258/16288_7#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297449809;8920 ERS653953 ERX1057130 GENOMIC 13304035 554081600 2015-08-12 SC_RUN_16288_7#67 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980258/16288_7#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980258/16288_7#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#67 ERR979963 SC_EXP_16288_4#7 217 223e8e794da12c72596b03a01e182d25;6a797941084803a7811f9ea97dd8a6c1 1313 cec561f728403973bbc6d27d15c48566;7c5b33b573829206363cd100924161e2 SAMEA3232433 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979963/ERR979963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979963/ERR979963_2.fastq.gz 5370620 WGS GPS_NP_2178-sc-2205351 RANDOM 199758683;195511910 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979963/ERR979963_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979963/ERR979963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979963/16288_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979963/16288_4#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979963/ERR979963_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979963/ERR979963_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979963/16288_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979963/16288_4#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320825053;8122 ERS653644 ERX1056835 GENOMIC 13296305 537062000 2015-08-12 SC_RUN_16288_4#7 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979963/16288_4#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979963/16288_4#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_4#7 ERR913167 SC_EXP_15873_2#15 205 03ff20d3ba6e68dd93e9300b26b54888;ead561943c19095bcba7abaf0235926a 1313 0418d12926147b2e799131e8c30e0dd4;b183af83fba54b090ac9078b53911f3e SAMEA3233102 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913167/ERR913167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913167/ERR913167_2.fastq.gz 6711324 WGS GPS_GM_1246-sc-2205858 RANDOM 221559348;231436239 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913167/ERR913167_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913167/ERR913167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913167/15873_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913167/15873_2#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913167/ERR913167_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913167/ERR913167_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913167/15873_2#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913167/15873_2#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 369878511;10666 ERS654295 ERX992291 GENOMIC 13301921 671132400 2015-06-17 SC_RUN_15873_2#15 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913167/15873_2#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913167/15873_2#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_2#15 ERR925046 SC_EXP_15995_1#20 231 1c350fa193096eb1d099d4e7dd678fec;8526ff94b18a38bf152dd84e991958db 1313 1324e17f51f83bc176bad7287c4ba04c;697761dcf54bc7c7e254c29995fa25cd SAMEA3206740 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925046/ERR925046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925046/ERR925046_2.fastq.gz 1736618 WGS GPS_ZA_carriage_SP134-sc-2191674 RANDOM 53184831;55543364 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925046/ERR925046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925046/ERR925046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925046/15995_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925046/15995_1#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925046/ERR925046_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925046/ERR925046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925046/15995_1#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925046/15995_1#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88069569;2908 ERS638750 ERX1004321 GENOMIC 13241006 173661800 2015-06-23 SC_RUN_15995_1#20 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925046/15995_1#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925046/15995_1#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#20 ERR884328 SC_EXP_15682_1#30 218 4c2fc2336a9861326bfdecd9e7ebf540;574264816a69db3a69e82578d226663a 1313 ff2dfddafd280f7add73170f6a7eac76;3529abe7b5ffad75c4053f28a37153d0 SAMEA3176011 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884328/ERR884328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884328/ERR884328_2.fastq.gz 4495944 WGS GPS_PL_3700_09-sc-2191068 RANDOM 148534025;154374256 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884328/ERR884328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884328/ERR884328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884328/15682_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884328/15682_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884328/ERR884328_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884328/ERR884328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884328/15682_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884328/15682_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246927010;7191 ERS628959 ERX963731 GENOMIC 13029567 449594400 2015-05-21 SC_RUN_15682_1#30 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884328/15682_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884328/15682_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#30 ERR913507 SC_EXP_15874_1#27 217 7cd502f7cfee5362f5b07de9048abedd;b1731e0bcadae06e41000177ddbe64f3 1313 4c78171d32201cfd0de83d51dad0b660;ed21fb042385073d346d3bb47da28160 SAMEA3207032 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913507/ERR913507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913507/ERR913507_2.fastq.gz 5237282 WGS GPS_ZA_carriage_SP408-sc-2191969 RANDOM 154173132;163475965 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913507/ERR913507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913507/ERR913507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913507/15874_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913507/15874_1#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913507/ERR913507_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913507/ERR913507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913507/15874_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913507/15874_1#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255749058;8372 ERS639042 ERX992631 GENOMIC 13242076 523728200 2015-06-17 SC_RUN_15874_1#27 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913507/15874_1#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913507/15874_1#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#27 ERR876668 SC_EXP_15608_4#50 214 7a7ba9a65108873f931ca6fcc69c5abb;4354b37162136f4e67e06ab5a08e2d18 1313 fd5f866dd29a12731deca833c75d7875;a95a9eb91dc7e986b7f25e29213f1df9 SAMEA3175896 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876668/ERR876668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876668/ERR876668_2.fastq.gz 6302038 WGS GPS_US_PATH6509-sc-2190938 RANDOM 200870010;206384232 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876668/ERR876668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876668/ERR876668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876668/15608_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876668/15608_4#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876668/ERR876668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876668/ERR876668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876668/15608_4#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876668/15608_4#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 330648787;10017 ERS628844 ERX956231 GENOMIC 13029934 630203800 2015-05-12 SC_RUN_15608_4#50 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876668/15608_4#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876668/15608_4#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_4#50 ERR862465 SC_EXP_15378_4#17 205 3094abf006d3faebc5b0735a6786ddb4;bf7cb03158772e18dd23b36d999acadd 1313 2482cd1b76f77be0eca9176f68dc579f;97b6384f150fad0ae8f1bb916b300aca SAMEA3171149 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862465/ERR862465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862465/ERR862465_2.fastq.gz 3619800 WGS GPS_MW_1796-sc-2139712 RANDOM 124058942;127600799 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862465/ERR862465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862465/ERR862465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862465/15378_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862465/15378_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862465/ERR862465_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862465/ERR862465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862465/15378_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862465/15378_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 204061815;5795 ERS625540 ERX942115 GENOMIC 12826867 361980000 2015-04-21 SC_RUN_15378_4#17 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862465/15378_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862465/15378_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_4#17 ERR876569 SC_EXP_15608_3#44 211 6cd1ef72c4c15fa0e347626ef5ded953;ac38a2e0516acb9ece50298f7696b56d 1313 b451bca4240d8b498bd6b02b59932bcd;6aec133e4323756506c53a418bc3be74 SAMEA3175797 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876569/ERR876569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876569/ERR876569_2.fastq.gz 4773076 WGS GPS_SI_792_P-sc-2190836 RANDOM 152160112;157009632 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876569/ERR876569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876569/ERR876569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876569/15608_3#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876569/15608_3#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876569/ERR876569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876569/ERR876569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876569/15608_3#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876569/15608_3#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249806281;7558 ERS628745 ERX956132 GENOMIC 13024303 477307600 2015-05-12 SC_RUN_15608_3#44 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876569/15608_3#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876569/15608_3#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_3#44 ERR742482 SC_EXP_14673_2#69 220 262d8e2914cd77f791750d8762471740;30769ac9b6ca581d5cfbe00531feb552 1313 1231ce3e3406a1abb0f16115ae3a661f;4ff4b9154e03aed1033cf5e531e68368 SAMEA2796572 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742482/ERR742482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742482/ERR742482_2.fastq.gz 5001032 WGS GPS_US_3744_03-sc-2138552 RANDOM 155995373;161878581 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742482/ERR742482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742482/ERR742482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742482/14673_2#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742482/14673_2#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742482/ERR742482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742482/ERR742482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742482/14673_2#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742482/14673_2#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260442065;8007 ERS558183 ERX686165 GENOMIC 12061831 500103200 2015-01-27 SC_RUN_14673_2#69 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742482/14673_2#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742482/14673_2#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_2#69 ERR751110 SC_EXP_14723_6#8 216 11ce7f96e9de47b39b254d6c253ca54d;20f1f81d23e59bb274caf90b6ca68a7e 1313 38b82ab20af91c093a12c1f684c17878;58ebc7cfa6be03a4460112e8c0917ff2 SAMEA2797404 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751110/ERR751110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751110/ERR751110_2.fastq.gz 6387410 WGS GPS_US_PATH5573-sc-2139396 RANDOM 231004957;234236056 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751110/ERR751110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751110/ERR751110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751110/14723_6#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751110/14723_6#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751110/ERR751110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751110/ERR751110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751110/14723_6#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751110/14723_6#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 389370231;10325 ERS559015 ERX694792 GENOMIC 12134062 638741000 2015-02-03 SC_RUN_14723_6#8 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751110/14723_6#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751110/14723_6#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_6#8 ERR730610 SC_EXP_14555_3#92 227 1397f47c3d0301eb93654501495d5457;eb98e1bda19c74ab3402d86d2a41cfa9 1313 cba81aec857efb4b39ce1b0632b73c58;48a210c576abc1255571799f0346338a SAMEA2658532 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730610/ERR730610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730610/ERR730610_2.fastq.gz 4409294 WGS GPS_ZA_1374-sc-2021137 RANDOM 146709699;151425165 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730610/ERR730610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730610/ERR730610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730610/14555_3#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730610/14555_3#92.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730610/ERR730610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730610/ERR730610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730610/14555_3#92.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730610/14555_3#92.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245314785;7117 ERS508560 ERX674556 GENOMIC 11820729 440929400 2015-01-14 SC_RUN_14555_3#92 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730610/14555_3#92.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730610/14555_3#92.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#92 ERR730679 SC_EXP_14566_4#14 236 abf137c8155c0fc07b3247adf66d51fb;2b74280d69516c6da53b7b4a4aaa9bc3 1313 98ded0171fcb176bce7c959ee70783ab;ee34eba7e6031a9d5bff7117d5584f7f SAMEA2658567 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730679/ERR730679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730679/ERR730679_2.fastq.gz 4817232 WGS GPS_ZA_1581-sc-2021175 RANDOM 146055890;151359618 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730679/ERR730679_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730679/ERR730679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730679/14566_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730679/14566_4#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730679/ERR730679_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730679/ERR730679_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730679/14566_4#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730679/14566_4#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243261039;7843 ERS508595 ERX674625 GENOMIC 11911798 481723200 2015-01-14 SC_RUN_14566_4#14 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730679/14566_4#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730679/14566_4#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#14 ERR730932 SC_EXP_14566_6#77 237 58e98d606761a4df736dd27c5036111c;86521c76b7249805ecf1e9522194e239 1313 fb9659e3c5d3d100fd9b6c07dc05e75e;a57d22c16069631d2d4ce898d63a7a06 SAMEA2659051 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730932/ERR730932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730932/ERR730932_2.fastq.gz 4047868 WGS GPS_ZA_2024-sc-2021689 RANDOM 122988397;127650228 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730932/ERR730932_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730932/ERR730932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730932/14566_6#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730932/14566_6#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730932/ERR730932_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730932/ERR730932_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730932/14566_6#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730932/14566_6#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 205146192;6619 ERS509079 ERX674878 GENOMIC 11887157 404786800 2015-01-14 SC_RUN_14566_6#77 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730932/14566_6#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730932/14566_6#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#77 ERR730522 SC_EXP_14555_3#4 227 3d76c44891ba1ffd084fdcf8cbda0fd3;e44227aa885a4acecb73e63c288aae18 1313 e6a58c13990785d51a3281d809bc2562;7e2afb9c33c0544eab4461680f079e72 SAMEA2658272 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730522/ERR730522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730522/ERR730522_2.fastq.gz 5149072 WGS GPS_ZA_1286-sc-2020877 RANDOM 165393841;170539419 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730522/ERR730522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730522/ERR730522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730522/14555_3#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730522/14555_3#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730522/ERR730522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730522/ERR730522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730522/14555_3#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730522/14555_3#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 275893941;8553 ERS508300 ERX674468 GENOMIC 11820718 514907200 2015-01-14 SC_RUN_14555_3#4 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730522/14555_3#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730522/14555_3#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#4 ERR714453 SC_EXP_14410_8#11 224 26fe9533f7821220c8a8c939001f378c;30bdc9b68601ee17453cd7fbb562ae17 1313 7c656dea026a6cf78e8ca24793370eff;9117224c3f20f07998f7135e159c65b4 SAMEA2658334 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714453/ERR714453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714453/ERR714453_2.fastq.gz 4520964 WGS GPS_ZA_1483-sc-2020939 RANDOM 157827401;158880802 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714453/ERR714453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714453/ERR714453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714453/14410_8#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714453/14410_8#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714453/ERR714453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714453/ERR714453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714453/14410_8#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714453/14410_8#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259632852;7450 ERS508362 ERX658375 GENOMIC 11883077 452096400 2015-01-08 SC_RUN_14410_8#11 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714453/14410_8#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714453/14410_8#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_8#11 ERR633015 SC_EXP_13415_7#86 225 89bd063af09d29fac63e3cf9ca3baac0;c09d56c7f41504e21e4e59b67792a1e1 1313 11f993c050d0a91bdce2fab12272df4d;fc7c9f6590b1c51ed7e2bd2622aefc36 SAMEA2554197 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633015/ERR633015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633015/ERR633015_2.fastq.gz 3958474 WGS GPS_ZA_1086-sc-1951234 RANDOM 135735065;141741319 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633015/ERR633015_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633015/ERR633015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633015/13415_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633015/13415_7#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633015/ERR633015_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633015/ERR633015_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633015/13415_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633015/13415_7#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230254311;6423 ERS464698 ERX589569 GENOMIC 10646357 395847400 2014-09-23 SC_RUN_13415_7#86 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633015/13415_7#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633015/13415_7#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#86 ERR600296 SC_EXP_13414_4#26 250 f8a4d8418e96b7761dfd50bc9839ad2c;93bddf6d02f85760e1318d03c721571f 1313 65e8840223015a7131352cc69cab1e94;5030cb534a43a3a99017701412f64d26 SAMEA2521862 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600296/ERR600296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600296/ERR600296_2.fastq.gz 8452184 WGS 3721_02-sc-1947158 RANDOM 242859419;248728524 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600296/ERR600296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600296/ERR600296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600296/13414_4#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600296/13414_4#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600296/ERR600296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600296/ERR600296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600296/13414_4#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600296/13414_4#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 402424956;13716 ERS455402 ERX557125 GENOMIC 10614635 845218400 2014-09-16 SC_RUN_13414_4#26 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600296/13414_4#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600296/13414_4#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_4#26 ERR505908 SC_EXP_12291_6#17 219 0e3cedbab78297e553eddd5d8942bfad;68cb5f51737561db3eca0872b880d7e5 1313 040f4793951af048f06ec9dd83743cee;7e43d76bccac9eee3be18c7abb635e0d SAMEA2298199 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505908/ERR505908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505908/ERR505908_2.fastq.gz 4201156 WGS SA_GPS_SP133-sc-1810409 RANDOM 127964960;133834522 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505908/ERR505908_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505908/ERR505908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505908/12291_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505908/12291_6#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505908/ERR505908_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505908/ERR505908_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505908/12291_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505908/12291_6#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 213538361;6958 ERS390657 ERX471265 GENOMIC 9367838 420115600 2014-05-19 SC_RUN_12291_6#17 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505908/12291_6#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505908/12291_6#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_6#17 ERR505915 SC_EXP_12291_6#24 219 2a42b5f3af064e085b8b1de8d507f773;46d6d2305fa94529001688d466b2a64f 1313 08ac6ef99cfebb65ea7a380533b3b2a1;312cc90bd20dc5170db1d0565b4a9bc7 SAMEA2298206 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505915/ERR505915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505915/ERR505915_2.fastq.gz 4317056 WGS SA_GPS_SP140-sc-1810416 RANDOM 132812175;138498138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505915/ERR505915_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505915/ERR505915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505915/12291_6#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505915/12291_6#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505915/ERR505915_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505915/ERR505915_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505915/12291_6#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505915/12291_6#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 221506454;7069 ERS390664 ERX471272 GENOMIC 9367922 431705600 2014-05-19 SC_RUN_12291_6#24 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505915/12291_6#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505915/12291_6#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_6#24 ERR490743 SC_EXP_12162_1#39 223 676257737d03fe766527c22ded229135;c18c2bc412e3f6f65c0996ad3fd073c9 1313 8c550f7196043d23b82a4e889dccba9e;70b86b150c1e4d290785b31899b17723 SAMEA2298316 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490743/ERR490743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490743/ERR490743_2.fastq.gz 4503358 WGS SA_GPS_SP250-sc-1810527 RANDOM 137991179;146502396 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490743/ERR490743_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490743/ERR490743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490743/12162_1#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490743/12162_1#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490743/ERR490743_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490743/ERR490743_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490743/12162_1#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490743/12162_1#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232024659;7322 ERS390774 ERX456197 GENOMIC 9340518 450335800 2014-04-28 SC_RUN_12162_1#39 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490743/12162_1#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490743/12162_1#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12162_1#39 ERR490823 SC_EXP_12169_1#24 224 05022eacd8ae3ff8e5195f1dda8a160e;c41bd5cded7f78a55ce1364889bab7df 1313 f01fd18d8aeb507f6da13b3017022132;61de4aa2999de28c765a62735d13ca74 SAMEA2298206 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490823/ERR490823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490823/ERR490823_2.fastq.gz 2680526 WGS SA_GPS_SP140-sc-1810416 RANDOM 75246309;77693519 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490823/ERR490823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490823/ERR490823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490823/12169_1#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490823/12169_1#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490823/ERR490823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490823/ERR490823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490823/12169_1#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490823/12169_1#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 122908556;4428 ERS390664 ERX456277 GENOMIC 9367922 268052600 2014-04-28 SC_RUN_12169_1#24 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490823/12169_1#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490823/12169_1#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12291_6#24 ERR461806 SC_EXP_11861_5#69 221 3ab5581d53ae15bb038ec570f2b16f63;a8f5b28b37e7642b3825017b3b7d490c 1313 d3a6fd02f40d5449818c21c9fd3165ae;53b9e236564ddfa38dec5424b678070a SAMEA2239294 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461806/ERR461806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461806/ERR461806_2.fastq.gz 3795046 WGS 2020316-sc-2013-11-05T12:11:15Z-1750667 RANDOM 119439829;124365308 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461806/ERR461806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461806/ERR461806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461806/11861_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461806/11861_5#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461806/ERR461806_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461806/ERR461806_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461806/11861_5#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461806/11861_5#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 199386447;6145 ERS368106 ERX428147 GENOMIC 9017871 379504600 2014-03-18 SC_RUN_11861_5#69 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461806/11861_5#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461806/11861_5#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#69 ERR490816 SC_EXP_12169_1#17 224 940f80d297d37024838ce1666d0b22bc;0c8e43a8e26ffc180608ac476736a734 1313 0f0279847bab801766eca46af5262ee8;0f31e940fe42b1857e513728e449d3e8 SAMEA2298199 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490816/ERR490816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490816/ERR490816_2.fastq.gz 2639590 WGS SA_GPS_SP133-sc-1810409 RANDOM 73200139;75688354 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490816/ERR490816_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490816/ERR490816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490816/12169_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490816/12169_1#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490816/ERR490816_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490816/ERR490816_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490816/12169_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490816/12169_1#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 119079567;4451 ERS390657 ERX456270 GENOMIC 9367838 263959000 2014-04-28 SC_RUN_12169_1#17 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490816/12169_1#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490816/12169_1#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12291_6#17 ERR461749 SC_EXP_11861_5#10 221 f590b87b19dca0d23ba99f0864b35748;31c4e16f0cd014bb0bbbdb36199ca6c3 1313 12e23c0beef84f8e022724a945f63354;548a4464b50fedc7e5f10aa8a21b1a53 SAMEA2239237 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461749/ERR461749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461749/ERR461749_2.fastq.gz 3759026 WGS 2010796-sc-2013-11-05T12:10:18Z-1750609 RANDOM 116174042;120983990 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461749/ERR461749_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461749/ERR461749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461749/11861_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461749/11861_5#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461749/ERR461749_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461749/ERR461749_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461749/11861_5#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461749/11861_5#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 193513041;6193 ERS368049 ERX428090 GENOMIC 9017828 375902600 2014-03-18 SC_RUN_11861_5#10 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461749/11861_5#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461749/11861_5#10.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461710 SC_EXP_11861_4#66 224 5eb119c706bc17c2bd4d0d4ef866c98c;43579daecbae10881f67e292c101c7ee 1313 117d3bedb95671ed7f2a441cb4746f86;eba2280630b7bfad5d0a082512356efc SAMEA2239012 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461710/ERR461710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461710/ERR461710_2.fastq.gz 3898220 WGS 982315-sc-2013-11-05T12:06:28Z-1750378 RANDOM 122843380;127346566 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461710/ERR461710_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461710/ERR461710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461710/11861_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461710/11861_4#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461710/ERR461710_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461710/ERR461710_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461710/11861_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461710/11861_4#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 205666635;6387 ERS367824 ERX428051 GENOMIC 9016373 389822000 2014-03-18 SC_RUN_11861_4#66 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461710/11861_4#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461710/11861_4#66.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#66 ERR461373 SC_EXP_11860_8#91 222 2adcfb546563e3d444e60aeff1b12bd8;d14bb4f4323cd0f5a485d40eef17066b 1313 c9fa915d36219086aecca7c53b7b465e;ed162050adb7765b88df75df365d6898 SAMEA2239223 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461373/ERR461373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461373/ERR461373_2.fastq.gz 3850040 WGS 2010358-sc-2013-11-05T12:10:04Z-1750595 RANDOM 127802806;132983881 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461373/ERR461373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461373/ERR461373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461373/11860_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461373/11860_8#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461373/ERR461373_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461373/ERR461373_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461373/11860_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461373/11860_8#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 211804521;6053 ERS368035 ERX427714 GENOMIC 9015300 385004000 2014-03-18 SC_RUN_11860_8#91 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461373/11860_8#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461373/11860_8#91.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR449183 SC_EXP_11822_1#94 252 0ce6d4e4915c5314fcccd7746882659d;86a2593ff6433d0c9f4abe8394ad2492 1313 ddcd63f0ebebab29f1ced4b68cec5487;2531e11d37e2bf0c3ce36b33c7a2aada SAMEA2162916 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449183/ERR449183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449183/ERR449183_2.fastq.gz 4585758 WGS 5102_99-sc-2013-07-03T13:38:07Z-1659461 RANDOM 152252872;157592914 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449183/ERR449183_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449183/ERR449183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449183/11822_1#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449183/11822_1#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449183/ERR449183_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449183/ERR449183_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449183/11822_1#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449183/11822_1#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257857907;7480 ERS322632 ERX415555 GENOMIC 8966837 458575800 2014-03-04 SC_RUN_11822_1#94 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449183/11822_1#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449183/11822_1#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_1#94 ERR461042 SC_EXP_11860_5#38 210 360cc02ba14e18c612e95e08a2ca1d8a;df0b53294b6025fc258a91780c584ecb 1313 693a77f852d9ac6166d182f8e7e0fd30;b087b260a7a58c7f2c32b0e9f3e617c3 SAMEA2238408 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461042/ERR461042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461042/ERR461042_2.fastq.gz 2209270 WGS 2070880-sc-2013-11-05T11:55:55Z-1749767 RANDOM 60398955;63688625 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461042/ERR461042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461042/ERR461042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461042/11860_5#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461042/11860_5#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461042/ERR461042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461042/ERR461042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461042/11860_5#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461042/11860_5#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 97704984;3670 ERS367220 ERX427383 GENOMIC 9014547 220927000 2014-03-18 SC_RUN_11860_5#38 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461042/11860_5#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461042/11860_5#38.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR340823 SC_EXP_10208_2#7 215 058c7952c7a3d7fef949a7a69ccffa5e 1313 a5c122cad83fa46113cbf203d2a86629;4aeb719ed06580adfea508cb9ce43210 SAMEA2060154 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340823/ERR340823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340823/ERR340823_2.fastq.gz 2850077 WGS PBCN0402-sc-2013-03-27T13:20:41Z-1603718 RANDOM 192327893;217379571 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340823/ERR340823_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340823/ERR340823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340823/10208_2#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340823/ERR340823_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340823/ERR340823_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340823/10208_2#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 557208256 ERS225852 ERX313672 GENOMIC 7400649 570015400 2013-09-16 SC_RUN_10208_2#7 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340823/10208_2#7.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#7 ERR370170 SC_EXP_10678_6#27 210 3e7330679de78338a144ee4fd3d9a4dc;6b8c549d4cc5e5a1cd95f8b9674c8405 1313 f3fdbff34cec9f63b4873c08b988657a;2c1b228b9c6e7bd728ef3f5e2ebb1687 SAMEA2156552 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370170/ERR370170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370170/ERR370170_2.fastq.gz 5446232 WGS 384_196_6_11_2012-sc-2013-07-15T10:30:19Z-1658772 RANDOM 187951368;192838874 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370170/ERR370170_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370170/ERR370170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370170/10678_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370170/10678_6#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370170/ERR370170_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370170/ERR370170_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370170/10678_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370170/10678_6#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 305063235;8946 ERS325006 ERX342879 GENOMIC 8037208 544623200 2013-11-18 SC_RUN_10678_6#27 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370170/10678_6#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370170/10678_6#27.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_6#27 ERR331412 SC_EXP_10050_2#22 224 39388b0292b21f9c45f81295ad2fb5e9 1313 c33ba0d470de74f92b45567e1077fdfd;ea83d6bcfb7524990e555b229cc2dff3 SAMEA2058876 2013-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331412/ERR331412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331412/ERR331412_2.fastq.gz 2316101 WGS PBCN0039-sc-2013-03-27T13:16:28Z-1603468 RANDOM 151782392;163927913 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331412/ERR331412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331412/ERR331412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331412/10050_2#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331412/ERR331412_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331412/ERR331412_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331412/10050_2#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 430626214 ERS225604 ERX304341 GENOMIC 7376951 463220200 2013-08-27 SC_RUN_10050_2#22 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR331/ERR331412/10050_2#22.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA247607 10050_2#22 ERR048166 SC_EXP_6631_6#9 211 905a39b913a331c787a9186c1dfa32ad 1313 093891f70bec150be6502682a0d522f5;e3cfcc8d7888627fd341be71c4ac26d6 SAMEA1023879 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048166/ERR048166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048166/ERR048166_2.fastq.gz 8878308 WGS SMRU489-sc-2011-01-27-1060678 RANDOM 572021066;588531124 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048166/ERR048166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048166/ERR048166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048166/6631_6#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048166/ERR048166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048166/ERR048166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048166/6631_6#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1443532708 ERS019647 ERX025229 GENOMIC 3037808 1331746200 2011-10-11 SC_RUN_6631_6#9 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048166/6631_6#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR064011 SC_EXP_6925_7#10 235 fd3b106d007f28ccb6a2f204b281f6ed 1313 338bc88f5efc3c6ba518ec48ebd4ef61;5188edc2d5ed8b60e56547c0bd8f49ef SAMEA1028644 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064011/ERR064011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064011/ERR064011_2.fastq.gz 4087339 WGS SMRU2506-sc-2011-01-27-1062719 RANDOM 241368130;244690437 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064011/ERR064011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064011/ERR064011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064011/6925_7#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064011/ERR064011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064011/ERR064011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064011/6925_7#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 632610919 ERS022016 ERX041984 GENOMIC 3686170 613100850 2012-03-19 SC_RUN_6925_7#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064011/6925_7#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054571 SC_EXP_6755_3#15 217 27151e4eb535be69a699b497bdf697ed 1313 42f296043756084021046e7cef6c5354;adb160ab95367dc1a027629caa6adbd2 SAMEA1025030 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054571/ERR054571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054571/ERR054571_2.fastq.gz 3484267 WGS SMRU879-sc-2011-01-27-1061092 RANDOM 174787393;179233724 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054571/ERR054571_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054571/ERR054571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054571/6755_3#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054571/ERR054571_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054571/ERR054571_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054571/6755_3#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 458296087 ERS020389 ERX031617 GENOMIC 3152400 522640050 2011-11-15 SC_RUN_6755_3#15 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054571/6755_3#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051609 SC_EXP_6731_4#7 216 6fa58f37b46e8b2de3e496e1ca0c3fc2 1313 d3d411701b35a9b83c9d6dafbd0675b5;29e2885017387048a7c9182f569f7000 SAMEA1024713 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051609/ERR051609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051609/ERR051609_2.fastq.gz 2042378 WGS SMRU1063-sc-2011-01-27-1061276 RANDOM 114091360;118275576 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051609/ERR051609_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051609/ERR051609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051609/6731_4#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051609/ERR051609_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051609/ERR051609_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051609/6731_4#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 288306503 ERS020573 ERX028657 GENOMIC 3246288 306356700 2011-11-02 SC_RUN_6731_4#7 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051609/6731_4#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR067826 SC_EXP_6972_4#11 234 a43b306ff66e5081d697b4304e29ade0 1313 e522ad87d87558fe6d85a6af2531c831;1ac182c3f2a9a22ee4807d945db3da0d SAMEA1028881 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067826/ERR067826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067826/ERR067826_2.fastq.gz 4685608 WGS SMRU2603-sc-2011-01-27-1062816 RANDOM 298092015;305548462 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067826/ERR067826_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067826/ERR067826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067826/6972_4#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067826/ERR067826_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067826/ERR067826_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067826/6972_4#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 766407813 ERS022113 ERX045689 GENOMIC 3686278 702841200 2012-01-16 SC_RUN_6972_4#11 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067826/6972_4#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR066228 SC_EXP_6983_3#53 241 58c65bd385f7ae25f853d2260fdda257 1313 e0afd9d91182551ae693141b6c029808;fa438b136890bc013d099b5e09a82a40 SAMEA1025975 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066228/ERR066228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066228/ERR066228_2.fastq.gz 4703025 WGS SMRU2261-sc-2011-01-27-1062474 RANDOM 322014177;323912661 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066228/ERR066228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066228/ERR066228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066228/6983_3#53.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066228/ERR066228_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066228/ERR066228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066228/6983_3#53.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 811625788 ERS021770 ERX044091 GENOMIC 3594881 705453750 2012-01-10 SC_RUN_6983_3#53 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066228/6983_3#53.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR049993 SC_EXP_6680_5#10 231 e441efb6e8048cab0c8169a3076f36fe 1313 bf1ad2aa44bb71b27b17843d11a88df5;60c39b988ef035978e53ccb0b8fa5290 SAMEA1024581 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049993/ERR049993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049993/ERR049993_2.fastq.gz 4270826 WGS SMRU922-sc-2011-01-27-1061135 RANDOM 222130731;228342721 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049993/ERR049993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049993/ERR049993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049993/6680_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049993/ERR049993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049993/ERR049993_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049993/6680_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 574964667 ERS020432 ERX027053 GENOMIC 3178597 640623900 2011-11-07 SC_RUN_6680_5#10 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049993/6680_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR046168 SC_EXP_6512_6#3 236 14a1547698b499e6f849d318749c2d9e 1313 c1c93d80221353c61fc7fb070b1f6ab7;6748abcf68706af2f9ed7ee237cd4954 SAMEA1026360 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046168/ERR046168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046168/ERR046168_2.fastq.gz 5249641 WGS UoS4091-sc-2011-02-14-1078397 RANDOM 280292995;268461591 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046168/ERR046168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046168/ERR046168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046168/6512_6#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046168/ERR046168_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046168/ERR046168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046168/6512_6#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 701895067 ERS023343 ERX023230 GENOMIC 2735080 787446150 2011-09-20 SC_RUN_6512_6#3 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046168/6512_6#3.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_6#3 ERR044874 SC_EXP_6470_3#17 187 314d32a1d12ca2633040dac65ce073f8 1313 d1e052d7b63884cc3dbcb91dd7d33dea;945c2aedf5db1dc5e93dcd5b42a8a2d1 SAMEA1026455 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044874/ERR044874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044874/ERR044874_2.fastq.gz 6434556 WGS UoS0071-sc-2011-02-14-1078077 RANDOM 326601936;342523889 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044874/ERR044874_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044874/ERR044874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044874/6470_3#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044874/ERR044874_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044874/ERR044874_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044874/6470_3#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 862005305 ERS023022 ERX021982 GENOMIC 2719104 965183400 2011-09-06 SC_RUN_6470_3#17 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044874/6470_3#17.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#17 ERR044865 SC_EXP_6470_3#8 187 78628c9b2f3e8fe1dd8d9982a745a5a9 1313 15f343bee779335b328a891a3ba4835e;1c0c579ca74408f781a94f61fa1a9b3d SAMEA1026575 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044865/ERR044865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044865/ERR044865_2.fastq.gz 8357004 WGS UoS0038-sc-2011-02-14-1078068 RANDOM 414926243;434422691 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044865/ERR044865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044865/ERR044865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044865/6470_3#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044865/ERR044865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044865/ERR044865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044865/6470_3#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1102291406 ERS023013 ERX021973 GENOMIC 2719095 1253550600 2011-09-06 SC_RUN_6470_3#8 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044865/6470_3#8.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#8 ERR2305581 SC_EXP_23495_7#25 393 10a5bfd2b1f294c6471bc424dff3ea7e;ef0871ccb2511b0c5d38838ff5753159 1313 9a1af2f7014c7c73dd33234729f773cb;0e6b7c5ab44bdeba073c68bdd89839bb SAMEA104034804 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305581/ERR2305581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305581/ERR2305581_2.fastq.gz 1635636 WGS f4004ba0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 46875867;52256159 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305581/ERR2305581_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/001/ERR2305581/ERR2305581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305581/23495_7#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305581/23495_7#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305581/ERR2305581_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/001/ERR2305581/ERR2305581_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305581/23495_7#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305581/23495_7#25.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 70779039;2835 ERS1698697 ERX2356891 GENOMIC DN483688I:A4 246981036 2018-02-16 SC_RUN_23495_7#25 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305581/23495_7#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305581/23495_7#25.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808771 ERR2305580 SC_EXP_23495_7#24 412 13866b1679a5c21d5a2426bf08d4a77c;a7659cd2e064f2d3832a17add00f9ed6 1313 3bca46d8cc58d7755f386dc3d7c047d4;073839658eba24762768e93aadc11a50 SAMEA104034803 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305580/ERR2305580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305580/ERR2305580_2.fastq.gz 1715816 WGS f3f83550-13c3-11e7-942b-3c4a9275d6c8 RANDOM 48644815;55606042 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305580/ERR2305580_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/000/ERR2305580/ERR2305580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305580/23495_7#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305580/23495_7#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305580/ERR2305580_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/000/ERR2305580/ERR2305580_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305580/23495_7#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305580/23495_7#24.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 75140282;2986 ERS1698696 ERX2356890 GENOMIC DN483688I:H3 259088216 2018-02-16 SC_RUN_23495_7#24 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305580/23495_7#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305580/23495_7#24.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808770 ERR2305566 SC_EXP_23495_7#10 390 f501430aad3bffded78bcf5c4c29db5c;1be53a5378f4e7f3273b5f420188e244 1313 e54ba2de65e168f796094d32afabe1fa;aa43e7a5ad20aa911832b39afceffc28 SAMEA104034789 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305566/ERR2305566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305566/ERR2305566_2.fastq.gz 1827838 WGS f37067b0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 51087495;56965832 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305566/ERR2305566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/006/ERR2305566/ERR2305566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305566/23495_7#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305566/23495_7#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305566/ERR2305566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/006/ERR2305566/ERR2305566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305566/23495_7#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305566/23495_7#10.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 77557055;3154 ERS1698682 ERX2356876 GENOMIC DN483688I:B2 276003538 2018-02-16 SC_RUN_23495_7#10 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305566/23495_7#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305566/23495_7#10.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808756 ERR2305553 SC_EXP_22984_8#91 361 ed217e47f1b10366243b3add060b3de3;ef0172e3a85198a8c07787e5f9bb1991 1313 e32ae7db1f49e289cdd6d4132d317701;9ba445286a5c83c8e47c1a506e38eb71 SAMEA104035080 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305553/ERR2305553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305553/ERR2305553_2.fastq.gz 2060048 WGS 0494fc40-13c4-11e7-942b-3c4a9275d6c8 RANDOM 57489008;76258114 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305553/ERR2305553_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305553/ERR2305553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305553/22984_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305553/22984_8#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305553/ERR2305553_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305553/ERR2305553_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305553/22984_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305553/22984_8#91.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 97775491;3506 ERS1698973 ERX2356863 GENOMIC DN483712O:C12 311067248 2018-02-16 SC_RUN_22984_8#91 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305553/22984_8#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305553/22984_8#91.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809030 ERR2305252 SC_EXP_22695_3#211 414 d5f9fc61c8755a539bfd62a549d7bc41;e04283506310f81036a323836382a8bc 1313 a0fc59dc27295e2326d413d2452f90fd;96a27294a4eed1fd49b99ad3dc0dd5ed SAMEA104034895 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305252/ERR2305252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305252/ERR2305252_2.fastq.gz 2479266 WGS fb08fc30-13c3-11e7-942b-3c4a9275d6c8 RANDOM 66664471;88488974 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305252/ERR2305252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/002/ERR2305252/ERR2305252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305252/22695_3#211.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305252/22695_3#211.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305252/ERR2305252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/002/ERR2305252/ERR2305252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305252/22695_3#211.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305252/22695_3#211.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 113484190;4205 ERS1698788 ERX2356562 GENOMIC DN477146R:E3 374369166 2018-02-16 SC_RUN_22695_3#211 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305252/22695_3#211.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305252/22695_3#211.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808863 ERR2305225 SC_EXP_22695_3#184 423 f0dace9a57e880003840cc160c72a6c6;40c38f42d0a54f137bb5eecc9b77d483 1313 76eeb624a64611cd0f2b89c23becb8ab;023d9037ba2072a1d5dfa22e95733bcd SAMEA104034773 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305225/ERR2305225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305225/ERR2305225_2.fastq.gz 2269616 WGS eef7b0d0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 60354676;82254037 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305225/ERR2305225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/005/ERR2305225/ERR2305225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305225/22695_3#184.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305225/22695_3#184.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305225/ERR2305225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/005/ERR2305225/ERR2305225_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305225/22695_3#184.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305225/22695_3#184.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104592706;3876 ERS1698666 ERX2356535 GENOMIC DN477141M:A12 342712016 2018-02-16 SC_RUN_22695_3#184 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305225/22695_3#184.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305225/22695_3#184.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808739 ERR1947705 SC_EXP_21946_6#185 448 31bccdfdc6ba0cdc4b34efc5a7924936;a7abcb046a7156eebd990a37f7e0effc 1313 ab2c58268fc4cde931625a8e63c1daac;f9f3083a1eb8471403a755feecd762b5 SAMEA4561000 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947705/ERR1947705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947705/ERR1947705_2.fastq.gz 2219372 WGS 01d0d350-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 57031452;80233228 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947705/ERR1947705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947705/ERR1947705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947705/21946_6#185.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947705/21946_6#185.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947705/ERR1947705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947705/ERR1947705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947705/21946_6#185.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947705/21946_6#185.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100197036;3760 ERS1460179 ERX2013492 GENOMIC 18471375 335125172 2017-04-25 SC_RUN_21946_6#185 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947705/21946_6#185.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947705/21946_6#185.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR2089470 SC_EXP_21999_8#25 460 76dd38680cbd1f9fd04ff12aea4b7a0c;6fbfcdfe2677556ecc87853cb0194bb0 1313 75572fa051964ac4303942024660dc86;e9e8befbd32d56e79f745b806524301a SAMEA104154734 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089470/ERR2089470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089470/ERR2089470_2.fastq.gz 2363822 WGS 70068240-c37a-11e6-b158-3c4a9275d6c8 RANDOM 45510366;47948198 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089470/ERR2089470_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/000/ERR2089470/ERR2089470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089470/21999_8#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089470/21999_8#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089470/ERR2089470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/000/ERR2089470/ERR2089470_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089470/21999_8#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089470/21999_8#25.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65229353;3905 ERS1813752 ERX2146264 GENOMIC DN476959T:A4 295477750 2017-08-08 SC_RUN_21999_8#25 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089470/21999_8#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089470/21999_8#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#25 ERR1947632 SC_EXP_21946_6#112 450 b7b0b3992fd74385c5f17b3af59d0ddb;afe8d0032325e31a1ef32acef824ab09 1313 2c15cbf0a526372463972b3a46ac1491;60fa84236bd2cc1f73de8026dedb6440 SAMEA17681668 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947632/ERR1947632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947632/ERR1947632_2.fastq.gz 2163318 WGS 3e9b43b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 55517982;78263035 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947632/ERR1947632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947632/ERR1947632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947632/21946_6#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947632/21946_6#112.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947632/ERR1947632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947632/ERR1947632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947632/21946_6#112.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947632/21946_6#112.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 97858604;3695 ERS1461690 ERX2013419 GENOMIC 18471462 326661018 2017-04-25 SC_RUN_21946_6#112 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947632/21946_6#112.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947632/21946_6#112.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947572 SC_EXP_21946_6#52 453 b639dd07c1e29ae5bd0196307f64e01f;0a9f8150b1ede4baa0c71aebf70a392e 1313 ce2152c7bb151f9332179561657cc7dd;a78280f8a370099899a46ebbf6caa722 SAMEA4561601 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947572/ERR1947572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947572/ERR1947572_2.fastq.gz 2056592 WGS 373e0a80-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 52773633;74266715 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947572/ERR1947572_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947572/ERR1947572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947572/21946_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947572/21946_6#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947572/ERR1947572_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947572/ERR1947572_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947572/21946_6#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947572/21946_6#52.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92636845;3538 ERS1460780 ERX2013359 GENOMIC 18471660 310545392 2017-04-25 SC_RUN_21946_6#52 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947572/21946_6#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947572/21946_6#52.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1422515 SC_EXP_19084_8#2 424 af465c0f96b6090285e502771a642f64;29d680ced4f95dbbffd3342935858f9b 1313 32e0f27ad84594315ed38113418e83a2;339e9aa114788c1f146cbf5b80bd0971 SAMEA3714339 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422515/ERR1422515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422515/ERR1422515_2.fastq.gz 2676046 WGS 4cca0300-41bd-11e5-998e-3c4a9275d6c6 RANDOM 59334231;59080735 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422515/ERR1422515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/005/ERR1422515/ERR1422515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422515/19084_8#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422515/19084_8#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422515/ERR1422515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/005/ERR1422515/ERR1422515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422515/19084_8#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422515/19084_8#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86569134;4528 ERS1021488 ERX1493097 GENOMIC 15758389 334505750 2016-05-24 SC_RUN_19084_8#2 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422515/19084_8#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422515/19084_8#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#2 ERR1202577 SC_EXP_17966_5#127 464 6c1633c2096b9aa0afddf34707a866f6;c0ada8aa3e25908610b3f8dc5be7599c 1313 9cf902544fe5c7f82721bb2fdbe33090;dbcfcca199374404309e3f67409b3f59 SAMEA3430865 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202577/ERR1202577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202577/ERR1202577_2.fastq.gz 2187870 WGS GPS_US_2009218404_R1-sc-2296386 RANDOM 38521174;40881108 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202577/ERR1202577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/007/ERR1202577/ERR1202577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202577/17966_5#127.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202577/17966_5#127.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/007/ERR1202577/ERR1202577_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/007/ERR1202577/ERR1202577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202577/17966_5#127.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202577/17966_5#127.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 55919575;3715 ERS740150 ERX1274819 GENOMIC 15024766 273483750 2016-01-12 SC_RUN_17966_5#127 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202577/17966_5#127.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202577/17966_5#127.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#127 ERR1214647 SC_EXP_18090_2#139 454 02767464a82928bba066f8fcad5924f5;72a82586f6119f24fe5bee4c784212fa 1313 3aab57d85bd8e429442a30520543b4e5;a64ee6a79b986746d1ed6cc65ff755d3 SAMEA3431599 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214647/ERR1214647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214647/ERR1214647_2.fastq.gz 2697480 WGS GPS_HK_142-sc-2296800 RANDOM 55624867;60145614 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214647/ERR1214647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/007/ERR1214647/ERR1214647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214647/18090_2#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214647/18090_2#139.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/007/ERR1214647/ERR1214647_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/007/ERR1214647/ERR1214647_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214647/18090_2#139.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214647/18090_2#139.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83209533;4432 ERS740884 ERX1286860 GENOMIC 15080077 337185000 2016-01-19 SC_RUN_18090_2#139 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214647/18090_2#139.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214647/18090_2#139.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#139 ERR1066355 SC_EXP_17175_8#71 467 482fd95f73731bfee1f0b32f16ad9f50;b16f1da9e21e0974f210dba0fd454ca5 1313 c8b51f894788be04e17094dd14bdb9ed;bb6360791100fcf013b6bc143b542e30 SAMEA3354036 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066355/ERR1066355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066355/ERR1066355_2.fastq.gz 5463644 WGS GPS_ZA_2952-sc-2278642 RANDOM 99158111;103848244 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066355/ERR1066355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1066355/ERR1066355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066355/17175_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066355/17175_8#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066355/ERR1066355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1066355/ERR1066355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066355/17175_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066355/17175_8#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 155908619;8971 ERS708391 ERX1146505 GENOMIC 14455766 682955500 2015-10-13 SC_RUN_17175_8#71 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066355/17175_8#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066355/17175_8#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#71 ERR600265 SC_EXP_13414_3#59 223 71aa2e70ccfce84828bca3d749908564;6a00711561b4f4fc7a70f56873428d25 1313 e063e232105d0234a06519d1d0248a0f;e2a20cbb2a3ab43549e967b401eb11b7 SAMEA2521705 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600265/ERR600265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600265/ERR600265_2.fastq.gz 6220492 WGS 2012212521-sc-1946998 RANDOM 203815000;210755461 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600265/ERR600265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600265/ERR600265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600265/13414_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600265/13414_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600265/ERR600265_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600265/ERR600265_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600265/13414_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600265/13414_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 341743417;10156 ERS455245 ERX557094 GENOMIC 10600622 622049200 2014-09-16 SC_RUN_13414_3#59 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600265/13414_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600265/13414_3#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#59 ERR742372 SC_EXP_14673_1#47 214 40a90b3ed8d96777da61602218882d23;b9e15e27c2e5659af14b31b3d5f7c237 1313 504710d8c7c807b7b5890d4f55e44371;baeeffdfd0f8865f5edbbf784bc4e8e8 SAMEA2796455 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742372/ERR742372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742372/ERR742372_2.fastq.gz 4963954 WGS GPS_US_9284_06-sc-2138434 RANDOM 164809044;167084496 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742372/ERR742372_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742372/ERR742372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742372/14673_1#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742372/14673_1#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742372/ERR742372_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742372/ERR742372_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742372/14673_1#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742372/14673_1#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 268184279;7692 ERS558066 ERX686055 GENOMIC 12061755 496395400 2015-01-27 SC_RUN_14673_1#47 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742372/14673_1#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742372/14673_1#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#47 ERR750791 SC_EXP_14723_1#62 225 32a789c33290a17a03d0a9c558bc4cce;f294a257d535d213ef2e75740a9b2a9f 1313 30970e45c5b5f3abf06a169c932396ec;f7c8df7431f81292c9080725ba36b684 SAMEA2797040 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750791/ERR750791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750791/ERR750791_2.fastq.gz 5169396 WGS GPS_US_PATH2126-sc-2139050 RANDOM 192590280;196372898 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750791/ERR750791_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750791/ERR750791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750791/14723_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750791/14723_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750791/ERR750791_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750791/ERR750791_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750791/14723_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750791/14723_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 323210747;8204 ERS558651 ERX694473 GENOMIC 12123413 516939600 2015-02-03 SC_RUN_14723_1#62 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750791/14723_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750791/14723_1#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_1#62 ERR559395 SC_EXP_12718_5#34 231 519eeefff14f2bdb35cda873d832076c;b4de7282aa7b44996d20ceabeafca5ed 1313 bda16508453b6835a58cf8849683a810;45198628e99b14e37e5b5e6d8ac205e3 SAMEA2382864 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559395/ERR559395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559395/ERR559395_2.fastq.gz 4095934 WGS 2070235_II-sc-1870112 RANDOM 130507688;135802784 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559395/ERR559395_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559395/ERR559395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559395/12718_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559395/12718_5#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559395/ERR559395_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559395/ERR559395_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559395/12718_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559395/12718_5#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 217152915;6623 ERS409189 ERX518431 GENOMIC 9918381 409593400 2014-07-10 SC_RUN_12718_5#34 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559395/12718_5#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559395/12718_5#34.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#34 ERR1065691 SC_EXP_17150_4#52 458 7a798d60b1d0b03768a5b667cd42e49e;30d01db30230bb9e0bf6d6aca4a545a6 1313 ec6edd509d0b8afaf9b46b55b3082f9b;dcb9592d5f8ff21bccd6af73924be409 SAMEA3353633 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065691/ERR1065691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065691/ERR1065691_2.fastq.gz 5025626 WGS GPS_ZA_carriage_SP1568-sc-2278235 RANDOM 98371192;94983067 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065691/ERR1065691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065691/ERR1065691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065691/17150_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065691/17150_4#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065691/ERR1065691_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065691/ERR1065691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065691/17150_4#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065691/17150_4#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 147786410;8300 ERS707988 ERX1145841 GENOMIC 14436436 628203250 2015-10-13 SC_RUN_17150_4#52 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065691/17150_4#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065691/17150_4#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#52 ERR554944 SC_EXP_12673_7#18 217 46b344e17573a500c9a50492160272cc;14ba9f35e8211d7d8e32af4b57634ec8 1313 992674836c81c3604f9efe2d37557f05;8772b10c345d1147e41d224fa377569c SAMEA2382658 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554944/ERR554944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554944/ERR554944_2.fastq.gz 4902984 WGS 991470_II-sc-1869904 RANDOM 167387743;186562291 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554944/ERR554944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554944/ERR554944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554944/12673_7#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554944/12673_7#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554944/ERR554944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554944/ERR554944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554944/12673_7#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554944/12673_7#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 294368146;7987 ERS408983 ERX514013 GENOMIC 9799008 490298400 2014-07-02 SC_RUN_12673_7#18 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554944/12673_7#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554944/12673_7#18.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#18 ERR554914 SC_EXP_12673_6#83 221 e2924d12b728a744a232e63b5912b116;8c98133885779bd1bec19be6ddc2e378 1313 b9e3e1492a0666279f584ab185bcebb7;7069c2b15d365cfb88068aa4288c4861 SAMEA2382628 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554914/ERR554914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554914/ERR554914_2.fastq.gz 4537062 WGS 990326_II-sc-1869873 RANDOM 150450449;169343506 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554914/ERR554914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554914/ERR554914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554914/12673_6#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554914/12673_6#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554914/ERR554914_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554914/ERR554914_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554914/12673_6#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554914/12673_6#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 265921096;7442 ERS408953 ERX513983 GENOMIC 9798931 453706200 2014-07-02 SC_RUN_12673_6#83 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554914/12673_6#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554914/12673_6#83.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#83 ERR461313 SC_EXP_11860_8#29 222 a7c02c469c611d16dae185cf4af1b9e1;358718bc7f35d02b67522be9f68a8061 1313 eeb36006707f58f0d525f1886c54f25a;337af629f9140aa9cce5936527d826a9 SAMEA2239163 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461313/ERR461313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461313/ERR461313_2.fastq.gz 4266568 WGS 2001144-sc-2013-11-05T12:09:00Z-1750534 RANDOM 137444815;144109916 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461313/ERR461313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461313/ERR461313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461313/11860_8#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461313/11860_8#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461313/ERR461313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461313/ERR461313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461313/11860_8#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461313/11860_8#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 230310933;6973 ERS367975 ERX427654 GENOMIC 9015316 426656800 2014-03-18 SC_RUN_11860_8#29 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461313/11860_8#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461313/11860_8#29.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#29 ERR375827 SC_EXP_10702_5#78 229 42a6c8ac7b72a45fbf8fbc6b11c4adec;2792eee2fa3f699296f76a25431118f1 1313 77963003f4a44aa0564d9831f0916c83;c2a602ee9e615ae0d386bddbf38c5dd5 SAMEA2145958 2013-11-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375827/ERR375827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375827/ERR375827_2.fastq.gz 4529592 WGS 362_172_8_10_2012-sc-2013-07-15T10:27:45Z-1658605 RANDOM 162276012;165153000 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375827/ERR375827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375827/ERR375827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375827/10702_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375827/10702_5#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375827/ERR375827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375827/ERR375827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375827/10702_5#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375827/10702_5#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 270475160;7370 ERS324841 ERX348204 GENOMIC 8040264 452959200 2013-11-25 SC_RUN_10702_5#78 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375827/10702_5#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375827/10702_5#78.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA267456 10702_5#78 ERR375800 SC_EXP_10702_5#51 229 5a525343f217f7e84ad7ac1cc173652a;44917a9553c1af28e7b91f866860c379 1313 4aed139312749ff36296762ac39a1538;292d8def16af5b029536cf722b12ce14 SAMEA2144032 2013-11-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375800/ERR375800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375800/ERR375800_2.fastq.gz 4728496 WGS 368_178_29_10_2012-sc-2013-07-15T10:29:09Z-1658694 RANDOM 169297672;172318256 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375800/ERR375800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375800/ERR375800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375800/10702_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375800/10702_5#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375800/ERR375800_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375800/ERR375800_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375800/10702_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375800/10702_5#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 281873636;7710 ERS324929 ERX348177 GENOMIC 8040225 472849600 2013-11-25 SC_RUN_10702_5#51 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375800/10702_5#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375800/10702_5#51.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA267456 10702_5#51 ERR375787 SC_EXP_10702_5#38 229 67dcd43a9b448af47ad05d0553a20fc8;da7eece9c052181c7affcdf2c1ec0920 1313 345de68398aa57dbb0a33ab4dc7db885;1edc2ece902c6fb74918e5781fd4dfc8 SAMEA2150838 2013-11-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375787/ERR375787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375787/ERR375787_2.fastq.gz 4653792 WGS 368_178_8_10_2012-sc-2013-07-15T10:27:59Z-1658620 RANDOM 166837897;169894016 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375787/ERR375787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375787/ERR375787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375787/10702_5#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375787/10702_5#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375787/ERR375787_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375787/ERR375787_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375787/10702_5#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375787/10702_5#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 277463784;7587 ERS324855 ERX348164 GENOMIC 8040259 465379200 2013-11-25 SC_RUN_10702_5#38 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375787/10702_5#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375787/10702_5#38.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA267456 10702_5#38 ERR375776 SC_EXP_10702_5#27 229 f6f78701f93d79312e40363d31778044;c531ede0213663af91bb566c10103eeb 1313 bfbaa44bbb4c9e29f4d2d8a34fb0bda2;78dbd1fa399b578113b0b1b2e6be33cc SAMEA2144407 2013-11-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375776/ERR375776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375776/ERR375776_2.fastq.gz 4568262 WGS 364_174_19_9_2012-sc-2013-07-15T10:26:42Z-1658542 RANDOM 163444658;166153241 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375776/ERR375776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR375/ERR375776/ERR375776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375776/10702_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375776/10702_5#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375776/ERR375776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR375/ERR375776/ERR375776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375776/10702_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR375/ERR375776/10702_5#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 272080629;7423 ERS324778 ERX348153 GENOMIC 8040222 456826200 2013-11-25 SC_RUN_10702_5#27 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375776/10702_5#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR375/ERR375776/10702_5#27.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA267456 10702_5#27 ERR370252 SC_EXP_10678_7#21 214 acf1611312633d4adcccf6702adef528;cbe11e2b3309f793441d78c637846216 1313 b2dd88488d1bb51cb40684334001be03;f910ce5d53451ef6e853cd30dd3b51e2 SAMEA2156333 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370252/ERR370252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370252/ERR370252_2.fastq.gz 4689068 WGS 368_178_29_10_2012-sc-2013-07-15T10:29:06Z-1658691 RANDOM 163474716;168461022 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370252/ERR370252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370252/ERR370252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370252/10678_7#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370252/10678_7#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370252/ERR370252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370252/ERR370252_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370252/10678_7#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370252/10678_7#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 264395246;7629 ERS324926 ERX342961 GENOMIC 8037328 468906800 2013-11-18 SC_RUN_10678_7#21 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370252/10678_7#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370252/10678_7#21.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#21 ERR370234 SC_EXP_10678_7#3 214 5356af92ab8d42675be6740a4cd633a6;8bf5d8edfe6845cda863585d6de9331c 1313 3076d4b69c5d1aa5885250d5dfb1d5d8;bca064325e38bdf45adf8bdb22ff20ca SAMEA2162497 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370234/ERR370234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370234/ERR370234_2.fastq.gz 6189384 WGS 380_191_30_10_2012-sc-2013-07-15T10:29:19Z-1658705 RANDOM 214926464;221696807 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370234/ERR370234_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370234/ERR370234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370234/10678_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370234/10678_7#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370234/ERR370234_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370234/ERR370234_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370234/10678_7#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370234/10678_7#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 350667989;10117 ERS324940 ERX342943 GENOMIC 8037302 618938400 2013-11-18 SC_RUN_10678_7#3 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370234/10678_7#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370234/10678_7#3.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#3 ERR370215 SC_EXP_10678_6#72 210 e7002ef8ef94b85e8175bfff727a655b;4003f6b7c924563d093e9e6d35a71e26 1313 16ae6559f7b9a47047ed298e1795fb0b;4551718b05d976be547ca78428c3214f SAMEA2144832 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370215/ERR370215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370215/ERR370215_2.fastq.gz 5540830 WGS 380_191_6_11_2012-sc-2013-07-15T10:29:51Z-1658740 RANDOM 191497566;196542799 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370215/ERR370215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370215/ERR370215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370215/10678_6#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370215/10678_6#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370215/ERR370215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370215/ERR370215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370215/10678_6#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370215/10678_6#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 311264703;9047 ERS324974 ERX342924 GENOMIC 8037273 554083000 2013-11-18 SC_RUN_10678_6#72 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370215/10678_6#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370215/10678_6#72.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_6#72 ERR370202 SC_EXP_10678_6#59 210 bc7fa5fa23fafd41826e0fd64500bf01;a977a27d269f547d549d72e574820fe2 1313 587cbe4884ba3b597ca93d3f59bd7445;25d85d2d6013ba23df8f36039bbd84b0 SAMEA2145462 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370202/ERR370202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370202/ERR370202_2.fastq.gz 5857132 WGS 384_196_6_11_2012-sc-2013-07-15T10:30:18Z-1658770 RANDOM 201899917;206836649 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370202/ERR370202_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370202/ERR370202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370202/10678_6#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370202/10678_6#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370202/ERR370202_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370202/ERR370202_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370202/10678_6#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370202/10678_6#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 326341021;9578 ERS325004 ERX342911 GENOMIC 8037212 585713200 2013-11-18 SC_RUN_10678_6#59 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370202/10678_6#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370202/10678_6#59.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_6#59 ERR370187 SC_EXP_10678_6#44 210 82cf2a000c68775dfa81ffed14758920;9c15bd867550197e5752470fbffccaf7 1313 bdd9d8b76391a4e934ac8002529665ff;69f30b1dc30957f11e080cb51d3a7277 SAMEA2157572 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370187/ERR370187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370187/ERR370187_2.fastq.gz 5113082 WGS 384_196_6_11_2012-sc-2013-07-15T10:30:16Z-1658769 RANDOM 177605243;182430226 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370187/ERR370187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370187/ERR370187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370187/10678_6#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370187/10678_6#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370187/ERR370187_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370187/ERR370187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370187/10678_6#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370187/10678_6#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 286678732;8353 ERS325003 ERX342896 GENOMIC 8037222 511308200 2013-11-18 SC_RUN_10678_6#44 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370187/10678_6#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370187/10678_6#44.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_6#44 ERR370174 SC_EXP_10678_6#31 210 4f6fecd7ad66e8435a152485a1a96cff;7b2fc311ec6a8209777793ae7cc83749 1313 23cfeed7bbbc1768b661186d3b1b99f2;ced1a4f6b639858cc8379643c89286ef SAMEA2157728 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370174/ERR370174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370174/ERR370174_2.fastq.gz 5660610 WGS 382_193_30_10_2012-sc-2013-07-15T10:29:37Z-1658725 RANDOM 195186681;199973582 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370174/ERR370174_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370174/ERR370174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370174/10678_6#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370174/10678_6#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370174/ERR370174_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370174/ERR370174_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370174/10678_6#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370174/10678_6#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 316629299;9214 ERS324959 ERX342883 GENOMIC 8037256 566061000 2013-11-18 SC_RUN_10678_6#31 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370174/10678_6#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370174/10678_6#31.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_6#31 ERR370317 SC_EXP_10678_7#86 214 6462a1f5576a39771dab19bdd9295a64;97244d35811510663a83b9edfdb53847 1313 c94c91ce22ce576bdaf0f5c30452ec53;0a7961149f4f6ed2c25460b7b711c35c SAMEA2160432 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370317/ERR370317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370317/ERR370317_2.fastq.gz 5002702 WGS 382_193_30_10_2012-sc-2013-07-15T10:29:42Z-1658730 RANDOM 173666215;178368329 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370317/ERR370317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370317/ERR370317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370317/10678_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370317/10678_7#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370317/ERR370317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370317/ERR370317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370317/10678_7#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370317/10678_7#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 282723023;8178 ERS324964 ERX343026 GENOMIC 8037348 500270200 2013-11-18 SC_RUN_10678_7#86 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370317/10678_7#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370317/10678_7#86.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#86 ERR370316 SC_EXP_10678_7#85 214 25694839b0d55ebb2936f95eaa42263f;de20c30f34b478553770d2c8ab116869 1313 eca1534aca38c3633309a351f9ee3e93;1a7c9b946826473ce720840650fb9596 SAMEA2157458 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370316/ERR370316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370316/ERR370316_2.fastq.gz 4983986 WGS 391_203_24_10_2012-sc-2013-07-15T10:29:03Z-1658687 RANDOM 174345652;179553350 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370316/ERR370316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370316/ERR370316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370316/10678_7#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370316/10678_7#85.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370316/ERR370316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370316/ERR370316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370316/10678_7#85.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370316/10678_7#85.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 282942335;8106 ERS324922 ERX343025 GENOMIC 8037336 498398600 2013-11-18 SC_RUN_10678_7#85 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370316/10678_7#85.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370316/10678_7#85.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#85 ERR370311 SC_EXP_10678_7#80 214 d49cffd6897e3e3e8842a6b81662612b;7494f43c3b0ac588794df7f0250b0272 1313 8c649d2d58135e481f7967b25845d61d;2544e7ff362598495226c061937fcfb2 SAMEA2163206 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370311/ERR370311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370311/ERR370311_2.fastq.gz 4529660 WGS 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639 RANDOM 157557795;161944320 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370311/ERR370311_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370311/ERR370311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370311/10678_7#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370311/10678_7#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370311/ERR370311_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370311/ERR370311_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370311/10678_7#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370311/10678_7#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 254703379;7375 ERS324874 ERX343020 GENOMIC 8037371 452966000 2013-11-18 SC_RUN_10678_7#80 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370311/10678_7#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370311/10678_7#80.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#80 ERR370300 SC_EXP_10678_7#69 214 08699c1f03fbf3abca82c8b38de78883;9b3c04bdbb56da646ecb8f043f6ac08d 1313 f943864bda65493be1827130ac37f6fb;d120d009e638f62dfba8cfc7d7699e46 SAMEA1965930 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370300/ERR370300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370300/ERR370300_2.fastq.gz 4583036 WGS 362_172_17_10_2012-sc-2013-07-15T10:28:12Z-1658633 RANDOM 159065728;163684347 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370300/ERR370300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370300/ERR370300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370300/10678_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370300/10678_7#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370300/ERR370300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370300/ERR370300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370300/10678_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370300/10678_7#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 259253774;7457 ERS324868 ERX343009 GENOMIC 8037334 458303600 2013-11-18 SC_RUN_10678_7#69 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370300/10678_7#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370300/10678_7#69.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#69 ERR370293 SC_EXP_10678_7#62 214 77626853390cc78bbd90b5f3e5915ff4;589fb1b15a481a3304da0bcfce35e408 1313 02feaf3e48210d48a0a9fc66799f63b4;a17e0855eee073c2595741aeaf4cf010 SAMEA2155176 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370293/ERR370293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370293/ERR370293_2.fastq.gz 5216616 WGS 362_172_8_10_2012-sc-2013-07-15T10:27:47Z-1658606 RANDOM 181173953;186471006 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370293/ERR370293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370293/ERR370293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370293/10678_7#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370293/10678_7#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370293/ERR370293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370293/ERR370293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370293/10678_7#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370293/10678_7#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 294133499;8529 ERS324842 ERX343002 GENOMIC 8037345 521661600 2013-11-18 SC_RUN_10678_7#62 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370293/10678_7#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370293/10678_7#62.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#62 ERR370190 SC_EXP_10678_6#47 210 33bde72cb43613a3925746eb4b4f85d8;ea8ad3e5b4ed7250fd5412abd919b2cc 1313 321a11461ed22825e9aaf3bc8f054928;02aa230d185c23c190e3e2fc6d2fd06a SAMEA2161031 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370190/ERR370190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370190/ERR370190_2.fastq.gz 5234716 WGS 381_192_6_11_2012-sc-2013-07-15T10:30:00Z-1658751 RANDOM 180617197;185363248 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370190/ERR370190_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370190/ERR370190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370190/10678_6#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370190/10678_6#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370190/ERR370190_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370190/ERR370190_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370190/10678_6#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370190/10678_6#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 292174292;8544 ERS324985 ERX342899 GENOMIC 8037258 523471600 2013-11-18 SC_RUN_10678_6#47 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370190/10678_6#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370190/10678_6#47.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_6#47 ERR129044 SC_EXP_7622_2#20 219 d8a67f13c31d77288393cfcfbb5f4cae 1313 ac395733518a87b5b25456418f6b30d1;43549b4d98f5d167656bbe7f01b9b59d SAMEA1463126 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129044/ERR129044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129044/ERR129044_2.fastq.gz 2830005 WGS BR1064-sc-2011-11-08T10:06:36Z-1298303 RANDOM 301972575;310796706 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129044/ERR129044_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129044/ERR129044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129044/7622_2#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129044/ERR129044_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129044/ERR129044_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129044/7622_2#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 592979025 ERS069935 ERX105185 GENOMIC 4336453 566001000 2012-05-28 SC_RUN_7622_2#20 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129044/7622_2#20.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124217 SC_EXP_7553_4#1 206 730c3bf6fe05e8d002d60c117e8cbbe1 1313 39a16f76179bf68a5885ee0d067ed4e9;8998717d4fb5fefb604954a546712084 SAMEA1463040 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124217/ERR124217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124217/ERR124217_2.fastq.gz 7784023 WGS ND6110-sc-2011-11-08T10:08:43Z-1298476 RANDOM 822029280;822061602 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124217/ERR124217_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124217/ERR124217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124217/7553_4#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124217/ERR124217_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124217/ERR124217_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124217/7553_4#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1587503903 ERS070108 ERX100399 GENOMIC 4382925 1556804600 2012-05-09 SC_RUN_7553_4#1 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124217/7553_4#1.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR370261 SC_EXP_10678_7#30 214 80f0557fedb32ed6861e33a5d42e0ef9;9c79d727fcc2e0a380ee8480bd05a249 1313 86bf6f21d291e9609b04d7891f1bec3a;e7fa0bae26062a24b0ee123095ef1083 SAMEA2143673 2013-11-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370261/ERR370261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370261/ERR370261_2.fastq.gz 4623016 WGS 382_193_23_10_2012-sc-2013-07-15T10:28:44Z-1658667 RANDOM 160802845;165332767 CRAM;CRAI Streptococcus pneumoniae Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370261/ERR370261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR370/ERR370261/ERR370261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370261/10678_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370261/10678_7#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370261/ERR370261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR370/ERR370261/ERR370261_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370261/10678_7#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR370/ERR370261/10678_7#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4477 ERP003770 261004488;7526 ERS324902 ERX342970 GENOMIC 8037341 462301600 2013-11-18 SC_RUN_10678_7#30 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370261/10678_7#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR370/ERR370261/10678_7#30.cram.crai Discovery_of_natural_pneumococcal_mutation_rates_during_controlled_colonisation_of_the_human_nasopharynx-sc-2013-08-13T17:04:06Z-2690 Illumina HiSeq 2000 paired end sequencing ERA266952 10678_7#30 ERR124266 SC_EXP_7553_5#50 207 72fdea514a039de5486d369d708cda5d 1313 0af4c289b51a30c3ddc4d83676550501;13799efb31d7144bbf840c4a7b8a040a SAMEA1463194 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124266/ERR124266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124266/ERR124266_2.fastq.gz 3919946 WGS NP7078-sc-2011-11-08T10:09:18Z-1298525 RANDOM 412472983;430605559 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124266/ERR124266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124266/ERR124266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124266/7553_5#50.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124266/ERR124266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124266/ERR124266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124266/7553_5#50.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 828830949 ERS070157 ERX100448 GENOMIC 4383169 783989200 2012-05-09 SC_RUN_7553_5#50 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124266/7553_5#50.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR064145 SC_EXP_6949_1#7 259 e13c34c8b713db4c466bb63b23951b7f 1313 08fa47f21a5e8c9f233a89d4682a3868;51993563c7ea82d0879dd61c9bcfe7ad SAMEA1028783 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064145/ERR064145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064145/ERR064145_2.fastq.gz 4353196 WGS SMRU2407-sc-2011-01-27-1062620 RANDOM 216280795;221415954 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064145/ERR064145_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064145/ERR064145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064145/6949_1#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064145/ERR064145_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064145/ERR064145_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064145/6949_1#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 556277950 ERS021916 ERX042118 GENOMIC 3660683 652979400 2012-03-19 SC_RUN_6949_1#7 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064145/6949_1#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR068025 SC_EXP_7001_2#20 224 a45a56c8940ce35bfa47f56e50e2b30d 1313 fcae246cd083e4eebf56d085c9ebcd4a;a589279409a4657193bacbbad583362d SAMEA1032464 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068025/ERR068025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068025/ERR068025_2.fastq.gz 4307370 WGS 3125-sc-2011-08-01T09:43:48Z-1250004 RANDOM 245269255;251811109 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068025/ERR068025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068025/ERR068025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068025/7001_2#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068025/ERR068025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068025/ERR068025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068025/7001_2#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 639575955 ERS043939 ERX045888 GENOMIC 3758188 646105500 2012-01-16 SC_RUN_7001_2#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068025/7001_2#20.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA080988 Streptococcus pneumoniae ERR057964 SC_EXP_6823_6#15 249 63856ef048cb7c064c902d51f4959976 1313 d3ce253fb9c5632f93f83e4c53fa2c2b;38ffdae2393fa5849bf6d365fdb84d3e SAMEA1025799 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057964/ERR057964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057964/ERR057964_2.fastq.gz 2898792 WGS SMRU1983-sc-2011-01-27-1062196 RANDOM 182571137;190084400 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057964/ERR057964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057964/ERR057964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057964/6823_6#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057964/ERR057964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057964/ERR057964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057964/6823_6#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 477191823 ERS021493 ERX035810 GENOMIC 3469212 434818800 2012-03-22 SC_RUN_6823_6#15 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057964/6823_6#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR065316 SC_EXP_6925_2#79 242 c0613d934577a86b98a396fe3c3d7c61 1313 f139391973bc90a6b4bff1a9c31d86b9;8c77fa7d3dd8a2da6cc5eb31ccb73ab0 SAMEA1032667 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065316/ERR065316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065316/ERR065316_2.fastq.gz 3124047 WGS 3060-sc-2011-08-01T09:43:05Z-1249945 RANDOM 173259270;175778743 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065316/ERR065316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065316/ERR065316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065316/6925_2#79.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065316/ERR065316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065316/ERR065316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065316/6925_2#79.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 449400865 ERS043880 ERX043289 GENOMIC 3610889 468607050 2012-01-05 SC_RUN_6925_2#79 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065316/6925_2#79.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079182 Streptococcus pneumoniae ERR050036 SC_EXP_6680_7#5 229 104e60be4f91ab6b41723319835b939f 1313 a6218b157a6f0de1a325cc7015c6da5f;e9be16277ce56b7a1275f38283e6ad52 SAMEA1024876 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050036/ERR050036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050036/ERR050036_2.fastq.gz 4620924 WGS SMRU965-sc-2011-01-27-1061178 RANDOM 253027916;264469778 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050036/ERR050036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050036/ERR050036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050036/6680_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050036/ERR050036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050036/ERR050036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050036/6680_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 660972280 ERS020475 ERX027096 GENOMIC 3178884 693138600 2011-11-07 SC_RUN_6680_7#5 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050036/6680_7#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR046099 SC_EXP_6512_3#4 204 92b2d13d49f64f0836bc800b9509f265 1313 b506930b336e3564a30587d240bdc264;ef156d9b35529b245b36a12626da48be SAMEA1026380 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046099/ERR046099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046099/ERR046099_2.fastq.gz 7004807 WGS UoS3190-sc-2011-02-14-1078328 RANDOM 423218850;427463628 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046099/ERR046099_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046099/ERR046099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046099/6512_3#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046099/ERR046099_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046099/ERR046099_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046099/6512_3#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1073794092 ERS023274 ERX023161 GENOMIC 2734303 1050721050 2011-09-20 SC_RUN_6512_3#4 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046099/6512_3#4.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#4 ERR039629 SC_EXP_6259_7#22 201 802f5aed9cca8380d0e05e28fac83255 1313 c58daaadd7e93b8e040555a259ac20b4;7fba87304544579e42811fe93e64b23a SAMEA974626 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039629/ERR039629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039629/ERR039629_2.fastq.gz 4591881 WGS SMRU70-sc-2011-01-27-1026495 RANDOM 236413023;248462404 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039629/ERR039629_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039629/ERR039629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039629/6259_7#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039629/ERR039629_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039629/ERR039629_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039629/6259_7#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 616599062 ERS019228 ERX016802 GENOMIC 2590974 688782150 2011-07-27 SC_RUN_6259_7#22 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039629/6259_7#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR046096 SC_EXP_6512_3#1 204 5b83a572705f709f18ff79d27300d448 1313 4d9c5dbbafce1dd209118c52d8fd3bb8;535b6db4fb6da1f9101aef17c4242e64 SAMEA1026342 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046096/ERR046096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046096/ERR046096_2.fastq.gz 7324411 WGS UoS3180-sc-2011-02-14-1078325 RANDOM 441426623;443712127 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046096/ERR046096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046096/ERR046096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046096/6512_3#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046096/ERR046096_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046096/ERR046096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046096/6512_3#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1120089641 ERS023271 ERX023158 GENOMIC 2734300 1098661650 2011-09-20 SC_RUN_6512_3#1 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046096/6512_3#1.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_3#1 ERR2090796 SC_EXP_22841_2#65 394 8c14fb9ba6e631a594b2b660fef0f327;00a9293c4a7488d0c5778a4fc2a23876 1313 18dec7b3cbf03b1c65837ff628040fc1;09b62fb9e52b025775ccd042a450c242 SAMEA104035644 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090796/ERR2090796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090796/ERR2090796_2.fastq.gz 2550040 WGS b2308920-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 57296584;57988150 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090796/ERR2090796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2090796/ERR2090796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090796/22841_2#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090796/22841_2#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090796/ERR2090796_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2090796/ERR2090796_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090796/22841_2#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090796/22841_2#65.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79925376;4199 ERS1699537 ERX2147590 GENOMIC DN483653U:A9 318755000 2017-08-08 SC_RUN_22841_2#65 111 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090796/22841_2#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090796/22841_2#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#65 ERR2090794 SC_EXP_22841_2#63 391 1c34168b9c32ed9b2b24c97779e6cb42;a0d1c446c46d0c8fa8a809eefefcbf5f 1313 6a01573cbc5d1de834767df57dc8efed;5ef4f17ff53769dc5bc17da4876a427f SAMEA104035642 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090794/ERR2090794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090794/ERR2090794_2.fastq.gz 2843910 WGS b21a6910-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 62694297;66454958 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090794/ERR2090794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090794/ERR2090794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090794/22841_2#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090794/22841_2#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090794/ERR2090794_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090794/ERR2090794_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090794/22841_2#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090794/22841_2#63.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90339903;4672 ERS1699535 ERX2147588 GENOMIC DN483653U:G8 355488750 2017-08-08 SC_RUN_22841_2#63 108 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090794/22841_2#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090794/22841_2#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#63 ERR907422 SC_EXP_15940_2#47 215 e2f05ecf1e5755a55d9013dba6ba1e5f;6b1771fd4b4e3ac2aac789d56c6cdc4e 1313 354cb06fcc3405d6993d527b5d9e4499;de9426a6a68c82d37b6a16343abae946 SAMEA3221583 2015-06-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR907/ERR907422/ERR907422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR907/ERR907422/ERR907422_2.fastq.gz 5441636 WGS JHZ5562-sc-2222291 RANDOM 172356595;176511452 CRAM;CRAI Streptococcus pneumoniae Streptococcus_pneumoniae_from_the_pre_PCV7__PCV7_and_PCV13_eras ftp.sra.ebi.ac.uk/vol1/fastq/ERR907/ERR907422/ERR907422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR907/ERR907422/ERR907422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR907/ERR907422/15940_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR907/ERR907422/15940_2#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR907/ERR907422/ERR907422_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR907/ERR907422/ERR907422_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR907/ERR907422/15940_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR907/ERR907422/15940_2#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB8327 ERP009399 281154082;8715 ERS647084 ERX986682 GENOMIC 13364619 544163600 2015-06-03 SC_RUN_15940_2#47 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR907/ERR907422/15940_2#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR907/ERR907422/15940_2#47.cram.crai Streptococcus_pneumoniae_from_the_pre_PCV7__PCV7_and_PCV13_eras-sc-3501 Illumina HiSeq 2000 paired end sequencing ERA443525 ERR600191 SC_EXP_13414_2#58 233 2e18cb89360681a855e668cd7f3fb461;8a410bf110c0a79886cab8e148e727fc 1313 8ae569751f6f48562762f46bf8f0805f;2328d86c304422a21d4fc3f2cda9d065 SAMEA2521609 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600191/ERR600191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600191/ERR600191_2.fastq.gz 4733588 WGS 2012224918-sc-1946901 RANDOM 162833448;167947901 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600191/ERR600191_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600191/ERR600191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600191/13414_2#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600191/13414_2#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600191/ERR600191_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600191/ERR600191_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600191/13414_2#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600191/13414_2#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 271462857;7492 ERS455149 ERX557020 GENOMIC 10600513 473358800 2014-09-16 SC_RUN_13414_2#58 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600191/13414_2#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600191/13414_2#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#58 ERR063940 SC_EXP_6925_4#11 237 020a49c268ce357fe60dd683bb2f5aca 1313 0c84732371c2bd18f6d626fc7b12a8a6;c41d8705955cc3355626633ef2109c3a SAMEA1026119 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063940/ERR063940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063940/ERR063940_2.fastq.gz 4857691 WGS SMRU2147-sc-2011-01-27-1062360 RANDOM 286710822;298166102 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063940/ERR063940_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063940/ERR063940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063940/6925_4#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063940/ERR063940_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063940/ERR063940_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063940/6925_4#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 751752807 ERS021657 ERX041913 GENOMIC 3610942 728653650 2012-01-05 SC_RUN_6925_4#11 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063940/6925_4#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR559441 SC_EXP_12718_5#80 231 f1ad255c9962dcedd0ae9a790d3a2264;93efcd717fc2b3df525e0331090837b0 1313 df3ba0cb493dde361eb89da382fd33b4;f2f84baeca2e6feef8d0d4f9dfef8a19 SAMEA2382910 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559441/ERR559441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559441/ERR559441_2.fastq.gz 4860278 WGS 2071266_II-sc-1870158 RANDOM 150878654;157015480 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559441/ERR559441_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559441/ERR559441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559441/12718_5#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559441/12718_5#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559441/ERR559441_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559441/ERR559441_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559441/12718_5#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559441/12718_5#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 252383379;7968 ERS409235 ERX518477 GENOMIC 9918458 486027800 2014-07-10 SC_RUN_12718_5#80 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559441/12718_5#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559441/12718_5#80.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#80 ERR461262 SC_EXP_11860_7#73 206 52e0a2c717785a4274b5339531960fd5;e9f2c5bbe67159222f3357662c610fdb 1313 1b9e9f74fc5ae4ff6c098a9df19f562f;50eb23f6c9be959068e9cb8e4641aaa6 SAMEA2239112 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461262/ERR461262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461262/ERR461262_2.fastq.gz 4338748 WGS 2000164-sc-2013-11-05T12:08:07Z-1750482 RANDOM 139806801;144717941 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461262/ERR461262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461262/ERR461262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461262/11860_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461262/11860_7#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461262/ERR461262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461262/ERR461262_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461262/11860_7#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461262/11860_7#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 232067380;7115 ERS367924 ERX427603 GENOMIC 9014885 433874800 2014-03-18 SC_RUN_11860_7#73 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461262/11860_7#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461262/11860_7#73.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#73 ERR064131 SC_EXP_6938_8#17 232 726567d92c0b0b9545a31dafcf452493 1313 53c8624338a5a1fecd4ddabd5620c708;437dbd28ed47aa9a26aeeec1205dea92 SAMEA1028945 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064131/ERR064131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064131/ERR064131_2.fastq.gz 5982476 WGS SMRU2729-sc-2011-01-27-1062942 RANDOM 392014308;412033329 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064131/ERR064131_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064131/ERR064131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064131/6938_8#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064131/ERR064131_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064131/ERR064131_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064131/6938_8#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1016720401 ERS022239 ERX042104 GENOMIC 3651749 897371400 2012-03-19 SC_RUN_6938_8#17 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064131/6938_8#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064118 SC_EXP_6938_8#4 232 f8b8f512a4fb1aa22add449ea331fe2e 1313 98df4433cee9a030700a8448d299f0bf;488cdee5ac5c6058f1e6a87c4c61829a SAMEA1028725 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064118/ERR064118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064118/ERR064118_2.fastq.gz 5325858 WGS SMRU2716-sc-2011-01-27-1062929 RANDOM 348019438;365731064 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064118/ERR064118_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064118/ERR064118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064118/6938_8#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064118/ERR064118_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064118/ERR064118_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064118/6938_8#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 908790718 ERS022226 ERX042091 GENOMIC 3651736 798878700 2012-03-19 SC_RUN_6938_8#4 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064118/6938_8#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064112 SC_EXP_6938_7#22 236 117c8f5da23ce8a640945b6e84a56ddf 1313 3dfc9154f59c76177d8192f04b99dffa;097739bd213c72353cbffd32d919903a SAMEA1029130 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064112/ERR064112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064112/ERR064112_2.fastq.gz 4513381 WGS SMRU2710-sc-2011-01-27-1062923 RANDOM 301126885;321706994 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064112/ERR064112_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064112/ERR064112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064112/6938_7#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064112/ERR064112_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064112/ERR064112_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064112/6938_7#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 797321452 ERS022220 ERX042085 GENOMIC 3651730 677007150 2012-03-19 SC_RUN_6938_7#22 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064112/6938_7#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064113 SC_EXP_6938_7#23 236 144871db2038f5b28492e33d1c181a17 1313 2422e9d56a5cc5c4620e8432ab3da239;e4e3e70868a2290bd7fac8ce039e6fdc SAMEA1028642 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064113/ERR064113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064113/ERR064113_2.fastq.gz 4036641 WGS SMRU2711-sc-2011-01-27-1062924 RANDOM 269382235;288338891 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064113/ERR064113_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064113/ERR064113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064113/6938_7#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064113/ERR064113_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064113/ERR064113_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064113/6938_7#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 714246607 ERS022221 ERX042086 GENOMIC 3651731 605496150 2012-03-19 SC_RUN_6938_7#23 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064113/6938_7#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064066 SC_EXP_6938_3#36 233 32c7973770b34acfa85bb4a4ab7de428 1313 83350a077b71cd4f4eb1374a8aa0e86e;01b3316b730a577087cf0608d15051ee SAMEA1029307 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064066/ERR064066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064066/ERR064066_2.fastq.gz 4495573 WGS SMRU3161-sc-2011-01-27-1063374 RANDOM 304659222;314311527 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064066/ERR064066_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064066/ERR064066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064066/6938_3#36.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064066/ERR064066_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064066/ERR064066_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064066/6938_3#36.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 775048853 ERS022671 ERX042039 GENOMIC 3712403 674335950 2012-03-19 SC_RUN_6938_3#36 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064066/6938_3#36.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064031 SC_EXP_6925_8#6 228 263bb134aba516f28aa853c57ab2ee23 1313 3a7c108942c78a6260363f19ceeeddd8;e957f0f98f4a7f16c22441a588e795f7 SAMEA1028954 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064031/ERR064031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064031/ERR064031_2.fastq.gz 2492866 WGS SMRU2526-sc-2011-01-27-1062739 RANDOM 156192994;150487644 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064031/ERR064031_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064031/ERR064031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064031/6925_8#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064031/ERR064031_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064031/ERR064031_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064031/6925_8#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 397084901 ERS022036 ERX042004 GENOMIC 3686195 373929900 2012-03-19 SC_RUN_6925_8#6 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064031/6925_8#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063814 SC_EXP_6899_4#5 190 a2959d5f0fd63ddccd388a5488eaeb3a 1313 4a710bfcafb3d5170e8aabca9e8628aa;0416b4b0fa16f6aa8db1e1ad24e6e540 SAMEA1025851 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063814/ERR063814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063814/ERR063814_2.fastq.gz 3459619 WGS SMRU2021-sc-2011-01-27-1062234 RANDOM 227152835;221519109 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063814/ERR063814_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063814/ERR063814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063814/6899_4#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063814/ERR063814_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063814/ERR063814_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063814/6899_4#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 572370663 ERS021531 ERX041787 GENOMIC 3499946 518942850 2012-01-05 SC_RUN_6899_4#5 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063814/6899_4#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064227 SC_EXP_6949_4#17 261 a501dcd1fa6a429d97f42a76bf601c94 1313 deeea2985105a36e770f89279d94d99c;d38b7624db730b9d8cfbc6eed7720e3c SAMEA1029171 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064227/ERR064227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064227/ERR064227_2.fastq.gz 6146919 WGS SMRU2489-sc-2011-01-27-1062702 RANDOM 317162098;322835037 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064227/ERR064227_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064227/ERR064227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064227/6949_4#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064227/ERR064227_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064227/ERR064227_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064227/6949_4#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 798240526 ERS021999 ERX042200 GENOMIC 3660778 922037850 2012-03-19 SC_RUN_6949_4#17 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064227/6949_4#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR052402 SC_EXP_6569_4#13 213 201cef587588bb89676b00d1d1132062 1313 e74e49b5d6a81f6983c2247c042d4e63;7ee9ea467db18615454100f6c0986cd0 SAMEA1020674 2011-11-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052402/ERR052402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052402/ERR052402_2.fastq.gz 3709232 WGS PT3026-sc-2011-11-03T20:04:11Z-1132365 RANDOM 190731750;182288865 BAM Streptococcus pneumoniae Streptococcus pneumoniae global lineages ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052402/ERR052402_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR052/ERR052402/ERR052402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052402/6569_4#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052402/ERR052402_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR052/ERR052402/ERR052402_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR052/ERR052402/6569_4#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2255 ERP000310 473919491 ERS069287 ERX029450 GENOMIC 2772918 556384800 2011-11-07 SC_RUN_6569_4#13 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR052/ERR052402/6569_4#13.bam Streptococcus pneumoniae global lineages-sc-2010-08-26 Illumina HiSeq 2000 paired end sequencing ERA065590 Streptococcus pneumoniae Streptococcus pneumoniae ERR063965 SC_EXP_6925_5#12 235 e725efdb817c011e3e7d4c73ae9dbd53 1313 c21d2c26111be46527b68dec258caa2c;1334baf27d0dfd3cae12c4b0c8684914 SAMEA1025867 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063965/ERR063965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063965/ERR063965_2.fastq.gz 5513658 WGS SMRU2172-sc-2011-01-27-1062385 RANDOM 334233265;331218413 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063965/ERR063965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063965/ERR063965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063965/6925_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063965/ERR063965_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063965/ERR063965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063965/6925_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 864224569 ERS021682 ERX041938 GENOMIC 3610968 827048700 2012-01-05 SC_RUN_6925_5#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063965/6925_5#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR063971 SC_EXP_6925_5#18 235 83be26fd734ae6563c2184374d0e42a7 1313 dd07db1a5c01c37406d4cc04816e0430;d93a87cad6b9546fede7f77aa7504794 SAMEA1025909 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063971/ERR063971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063971/ERR063971_2.fastq.gz 4586691 WGS SMRU2178-sc-2011-01-27-1062391 RANDOM 277685289;274397277 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063971/ERR063971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR063/ERR063971/ERR063971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063971/6925_5#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063971/ERR063971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR063/ERR063971/ERR063971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR063/ERR063971/6925_5#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 712494365 ERS021688 ERX041944 GENOMIC 3610974 688003650 2012-01-05 SC_RUN_6925_5#18 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR063/ERR063971/6925_5#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR054399 SC_EXP_6736_8#10 242 0a3cdcd3b1eef15b960d065569eda4e4 1313 54d0266d2401c722416eda7346d3cf12;30de8c4aa19f1b11cbb6147800bbfffd SAMEA1025371 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054399/ERR054399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054399/ERR054399_2.fastq.gz 6453935 WGS SMRU1306-sc-2011-01-27-1061519 RANDOM 357080222;379265298 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054399/ERR054399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054399/ERR054399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054399/6736_8#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054399/ERR054399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054399/ERR054399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054399/6736_8#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 907423755 ERS020816 ERX031445 GENOMIC 3308153 968090250 2011-11-15 SC_RUN_6736_8#10 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054399/6736_8#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054614 SC_EXP_6755_5#10 248 a5e6fb13b4076c65c10f6b38c66f7242 1313 7247363379fad8b2d83213fb031507c0;f809b39a3fa4aa5440dd1fc14534fd05 SAMEA1025614 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054614/ERR054614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054614/ERR054614_2.fastq.gz 6469900 WGS SMRU1162-sc-2011-01-27-1061375 RANDOM 348009985;363806678 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054614/ERR054614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054614/ERR054614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054614/6755_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054614/ERR054614_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054614/ERR054614_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054614/6755_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 911111902 ERS020672 ERX031660 GENOMIC 3307622 970485000 2011-11-15 SC_RUN_6755_5#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054614/6755_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054586 SC_EXP_6755_4#6 251 7f736126517f961efbbe647461f404d3 1313 bb773ebcbb0d9bc1113a79c1bb38ae84;74b7452b7ab9a4e85616596974ff72d6 SAMEA1025032 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054586/ERR054586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054586/ERR054586_2.fastq.gz 6648212 WGS SMRU1134-sc-2011-01-27-1061347 RANDOM 343922398;357212800 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054586/ERR054586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054586/ERR054586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054586/6755_4#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054586/ERR054586_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054586/ERR054586_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054586/6755_4#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 887567221 ERS020644 ERX031632 GENOMIC 3307594 997231800 2011-11-15 SC_RUN_6755_4#6 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054586/6755_4#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054340 SC_EXP_6736_5#23 250 d7e7b0039f687d1c712ac8bebfb0223e 1313 461523806ba592f5b8d291f83902c7e8;54f1e63351e5c49e80c9c2e3840dd38f SAMEA1025258 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054340/ERR054340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054340/ERR054340_2.fastq.gz 6879728 WGS SMRU1247-sc-2011-01-27-1061460 RANDOM 378435744;396478305 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054340/ERR054340_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054340/ERR054340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054340/6736_5#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054340/ERR054340_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054340/ERR054340_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054340/6736_5#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 954151630 ERS020757 ERX031386 GENOMIC 3308094 1031959200 2011-11-15 SC_RUN_6736_5#23 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054340/6736_5#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054338 SC_EXP_6736_5#21 250 288e0bd189477a45ef8ae0bee18d69a7 1313 66f8cae8ac39cd4daf09d7bbd23e18c9;4d1bcd6da8db5d7f5eaa34bbd583d366 SAMEA1025299 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054338/ERR054338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054338/ERR054338_2.fastq.gz 6605390 WGS SMRU1245-sc-2011-01-27-1061458 RANDOM 360732638;378412116 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054338/ERR054338_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054338/ERR054338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054338/6736_5#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054338/ERR054338_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054338/ERR054338_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054338/6736_5#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 916184860 ERS020755 ERX031384 GENOMIC 3308092 990808500 2011-11-15 SC_RUN_6736_5#21 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054338/6736_5#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054330 SC_EXP_6736_5#13 250 86342cb5d9f8626b0ec044ecf988df12 1313 ae20b47c6815643654aa84130773cc56;0d2b5b977d6b8b6444c9beeb83c1dabb SAMEA1025421 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054330/ERR054330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054330/ERR054330_2.fastq.gz 9172989 WGS SMRU1237-sc-2011-01-27-1061450 RANDOM 505411796;526516133 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054330/ERR054330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054330/ERR054330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054330/6736_5#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054330/ERR054330_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054330/ERR054330_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054330/6736_5#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1261149433 ERS020747 ERX031376 GENOMIC 3308084 1375948350 2011-11-15 SC_RUN_6736_5#13 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054330/6736_5#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054313 SC_EXP_6736_4#20 246 614fae6dd87ebe8b844f73b16ee0955e 1313 27b25fc41dd886c6df0edcdfde0fbbf8;2c1daef7873f5cebe53f1760593c2038 SAMEA1025111 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054313/ERR054313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054313/ERR054313_2.fastq.gz 8029349 WGS SMRU1220-sc-2011-01-27-1061433 RANDOM 452311029;476705698 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054313/ERR054313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054313/ERR054313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054313/6736_4#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054313/ERR054313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054313/ERR054313_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054313/6736_4#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1145428441 ERS020730 ERX031359 GENOMIC 3308067 1204402350 2011-11-15 SC_RUN_6736_4#20 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054313/6736_4#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054283 SC_EXP_6710_8#14 230 dc30e8a8d3ab3c665cc107e0eea18f39 1313 adbe6d56f93ed7a0be60fe6a7edf099f;22c38ca57ca7eeff4176c40e876ad778 SAMEA1025110 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054283/ERR054283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054283/ERR054283_2.fastq.gz 13911283 WGS SMRU1406-sc-2011-01-27-1061619 RANDOM 797597906;832899689 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054283/ERR054283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054283/ERR054283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054283/6710_8#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054283/ERR054283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054283/ERR054283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054283/6710_8#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 2018499689 ERS020916 ERX031329 GENOMIC 3348864 2086692450 2011-11-15 SC_RUN_6710_8#14 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054283/6710_8#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051643 SC_EXP_6731_5#17 232 2be6f3040aa2b9b12765023c429e899b 1313 f56036516df20231fb26e97f3fc779c8;86f3400a96308ed311ea1c872cda7595 SAMEA1024902 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051643/ERR051643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051643/ERR051643_2.fastq.gz 5386702 WGS SMRU1097-sc-2011-01-27-1061310 RANDOM 326962841;345726730 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051643/ERR051643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051643/ERR051643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051643/6731_5#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051643/ERR051643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051643/ERR051643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051643/6731_5#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 867610988 ERS020607 ERX028691 GENOMIC 3246347 808005300 2011-11-02 SC_RUN_6731_5#17 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051643/6731_5#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051426 SC_EXP_6730_1#16 236 dafe4cccb27f3c68369cb6eb868df91f 1313 91350cf2b9ff5b84ac2fe3bbdb260028;72070eb0987f08162474aa1d8d6c1aad SAMEA1025090 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051426/ERR051426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051426/ERR051426_2.fastq.gz 2483719 WGS SMRU592-sc-2011-01-27-1060781 RANDOM 138407947;143211093 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051426/ERR051426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051426/ERR051426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051426/6730_1#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051426/ERR051426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051426/ERR051426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051426/6730_1#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 355082659 ERS020102 ERX028474 GENOMIC 3100070 372557850 2011-11-02 SC_RUN_6730_1#16 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051426/6730_1#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR051542 SC_EXP_6730_8#12 229 5e7688560751ede2244a8775d235f00e 1313 14aa936910a01c56fce0aa1b5a4655fe;d3fec8c08adb9197f3de34855fbce036 SAMEA1024966 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051542/ERR051542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051542/ERR051542_2.fastq.gz 6876222 WGS SMRU732-sc-2011-01-27-1060921 RANDOM 375994160;385654917 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051542/ERR051542_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051542/ERR051542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051542/6730_8#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051542/ERR051542_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051542/ERR051542_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051542/6730_8#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 942404381 ERS020242 ERX028590 GENOMIC 3100234 1031433300 2011-11-02 SC_RUN_6730_8#12 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051542/6730_8#12.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR067891 SC_EXP_7004_6#28 224 363416af4ff6d9a0e88a22d6f825288e 1313 302fcd5b6f5f5c4086b34ea215af77c0;d1ddb146378f93c04d9c42ff896df24c SAMEA1028743 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067891/ERR067891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067891/ERR067891_2.fastq.gz 3404322 WGS SMRU2836-sc-2011-01-27-1063049 RANDOM 219108732;212966935 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067891/ERR067891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067891/ERR067891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067891/7004_6#28.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067891/ERR067891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067891/ERR067891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067891/7004_6#28.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 544802015 ERS022346 ERX045754 GENOMIC 3740215 510648300 2012-01-16 SC_RUN_7004_6#28 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067891/7004_6#28.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069825 SC_EXP_6999_7#5 242 1cdc9773a50aa4619310cef2f36dfa3b 1313 7bdf5e10bfec504c475f7aa899bda5dd;52e6eabb3a6d0cdfb0dc0d16d0eb9cd6 SAMEA1032511 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069825/ERR069825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069825/ERR069825_2.fastq.gz 3927647 WGS 342672-sc-2011-08-01T09:46:05Z-1250196 RANDOM 215179130;225877903 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069825/ERR069825_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069825/ERR069825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069825/6999_7#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069825/ERR069825_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069825/ERR069825_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069825/6999_7#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 573310329 ERS044131 ERX047678 GENOMIC 3737050 589147050 2012-01-19 SC_RUN_6999_7#5 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069825/6999_7#5.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR067858 SC_EXP_6972_5#19 233 56b85e423e767d5620a65591c86451ba 1313 3c95e15404a693934670275b57e65ea6;585fd0cc7b9d89d189542bc2369dbe6c SAMEA1029084 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067858/ERR067858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067858/ERR067858_2.fastq.gz 4563143 WGS SMRU2635-sc-2011-01-27-1062848 RANDOM 281857050;281498271 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067858/ERR067858_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067858/ERR067858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067858/6972_5#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067858/ERR067858_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067858/ERR067858_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067858/6972_5#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 735457181 ERS022145 ERX045721 GENOMIC 3686312 684471450 2012-01-16 SC_RUN_6972_5#19 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067858/6972_5#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR066281 SC_EXP_6983_5#10 242 c964dbc8516dd265816144e89902c4eb 1313 2b9be0b256413026d741d0a9a51e31f0;d2e6110cda43165586ec04145839bdac SAMEA1028871 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066281/ERR066281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066281/ERR066281_2.fastq.gz 3006784 WGS SMRU2314-sc-2011-01-27-1062527 RANDOM 215010006;220079171 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066281/ERR066281_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066281/ERR066281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066281/6983_5#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066281/ERR066281_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066281/ERR066281_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066281/6983_5#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 544361178 ERS021823 ERX044144 GENOMIC 3594934 451017600 2012-03-19 SC_RUN_6983_5#10 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066281/6983_5#10.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR069840 SC_EXP_6999_7#20 242 204079e59559a8ea1df0e1f69ad6387e 1313 1f3b7260554650497c2befbe34216b1b;23c1e5afa7e449432b6b899081aaddd6 SAMEA1032547 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069840/ERR069840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069840/ERR069840_2.fastq.gz 4707749 WGS 397079-sc-2011-08-01T09:46:16Z-1250211 RANDOM 259476259;271893775 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069840/ERR069840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069840/ERR069840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069840/6999_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069840/ERR069840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069840/ERR069840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069840/6999_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 677809717 ERS044146 ERX047693 GENOMIC 3737065 706162350 2012-01-19 SC_RUN_6999_7#20 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069840/6999_7#20.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR066312 SC_EXP_6983_6#41 237 0d3af4b302927416ca410d91b9b83749 1313 33e78626377d993479f5b0defb69dfa6;9c8e5c9b46b20d7dbf4e5f66da79dd05 SAMEA1028720 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066312/ERR066312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066312/ERR066312_2.fastq.gz 4241993 WGS SMRU2345-sc-2011-01-27-1062558 RANDOM 301417430;308266225 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066312/ERR066312_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066312/ERR066312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066312/6983_6#41.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066312/ERR066312_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066312/ERR066312_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066312/6983_6#41.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 758692683 ERS021854 ERX044175 GENOMIC 3594965 636298950 2012-03-19 SC_RUN_6983_6#41 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066312/6983_6#41.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066310 SC_EXP_6983_6#39 237 3c826c55f1c510d90e9d8e11da590202 1313 11d5a5369a654eefe98efb0e31797ea2;074a98a19f81c76fbb7818138d611893 SAMEA1028759 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066310/ERR066310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066310/ERR066310_2.fastq.gz 3034871 WGS SMRU2343-sc-2011-01-27-1062556 RANDOM 211680108;216891967 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066310/ERR066310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066310/ERR066310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066310/6983_6#39.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066310/ERR066310_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066310/ERR066310_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066310/6983_6#39.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 545168861 ERS021852 ERX044173 GENOMIC 3594963 455230650 2012-03-19 SC_RUN_6983_6#39 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066310/6983_6#39.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR066299 SC_EXP_6983_6#28 237 f5fb6e414b13108640059a4cb40eba82 1313 a2bc93121c956ee4bf8caa106cc6e5e9;8330048e0eb495b66d816089e05deb5f SAMEA1029170 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066299/ERR066299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066299/ERR066299_2.fastq.gz 5575370 WGS SMRU2332-sc-2011-01-27-1062545 RANDOM 387597975;395282322 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066299/ERR066299_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066299/ERR066299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066299/6983_6#28.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066299/ERR066299_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066299/ERR066299_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066299/6983_6#28.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 979847662 ERS021841 ERX044162 GENOMIC 3594952 836305500 2012-03-19 SC_RUN_6983_6#28 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066299/6983_6#28.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR057971 SC_EXP_6823_6#22 249 b301c9409256de3813292fca612b9eb5 1313 b784b99f9f9b16d759632e290ca2455c;9278d3d9bccf5949d4b7ac8f5a3c40ab SAMEA1025689 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057971/ERR057971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057971/ERR057971_2.fastq.gz 11180162 WGS SMRU1990-sc-2011-01-27-1062203 RANDOM 660079649;684356328 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057971/ERR057971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057971/ERR057971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057971/6823_6#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057971/ERR057971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057971/ERR057971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057971/6823_6#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1702496363 ERS021500 ERX035817 GENOMIC 3469219 1677024300 2012-03-22 SC_RUN_6823_6#22 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057971/6823_6#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057898 SC_EXP_6823_3#21 242 accbceeefd4b27c48e3035c3f5553dbe 1313 1f8ce1209aa4e0adbad05a0efb640301;a61598aa7f423b613bca06e7d08c1bb3 SAMEA1026146 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057898/ERR057898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057898/ERR057898_2.fastq.gz 6380661 WGS SMRU1917-sc-2011-01-27-1062130 RANDOM 426722828;438966552 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057898/ERR057898_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057898/ERR057898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057898/6823_3#21.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057898/ERR057898_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057898/ERR057898_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057898/6823_3#21.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1088215780 ERS021427 ERX035744 GENOMIC 3469146 957099150 2012-03-22 SC_RUN_6823_3#21 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057898/6823_3#21.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR057965 SC_EXP_6823_6#16 249 c6e8590b662c787876bb16f3e3a45671 1313 362937f9ce02d2bb44a86cf8641ad606;0479d1886384a1efa264333661da3122 SAMEA1025776 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057965/ERR057965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057965/ERR057965_2.fastq.gz 5643535 WGS SMRU1984-sc-2011-01-27-1062197 RANDOM 349533963;362995659 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057965/ERR057965_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057965/ERR057965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057965/6823_6#16.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057965/ERR057965_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057965/ERR057965_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057965/6823_6#16.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 900070256 ERS021494 ERX035811 GENOMIC 3469213 846530250 2012-03-22 SC_RUN_6823_6#16 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057965/6823_6#16.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR084250 SC_EXP_7038_7#24 246 f85815e09788bd8383bcf8e7cd29eba9 1313 7b4673d8ddd5962a7cd5c5591e82cf77;e767dcd71fce25df5ad3577fe493bf04 SAMEA1029323 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084250/ERR084250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084250/ERR084250_2.fastq.gz 7931410 WGS SMRU3024-sc-2011-01-27-1063237 RANDOM 509601165;527941192 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084250/ERR084250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084250/ERR084250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084250/7038_7#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084250/ERR084250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084250/ERR084250_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084250/7038_7#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1974597462 ERS022534 ERX062016 GENOMIC 3811777 1189711500 2012-02-07 SC_RUN_7038_7#24 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084250/7038_7#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR084297 SC_EXP_7068_4#23 228 7f5ddf9f31d2792c43f76db2092ae617 1313 ad7954b2c1ae8f6f90827b1b7aefbbb6;80408c206a21c8530650fc9f422859fb SAMEA1029373 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084297/ERR084297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084297/ERR084297_2.fastq.gz 5088075 WGS SMRU3143-sc-2011-01-27-1063356 RANDOM 326544973;330483595 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084297/ERR084297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084297/ERR084297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084297/7068_4#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084297/ERR084297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084297/ERR084297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084297/7068_4#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 830300868 ERS022653 ERX062063 GENOMIC 3910178 763211250 2012-02-07 SC_RUN_7068_4#23 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084297/7068_4#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR050021 SC_EXP_6680_6#14 233 3afbca8d82bb7a58095db81c07351099 1313 10fb12992fe51660908a3109813bd6c9;f17c5e29250a2af0ea1395d93dc8fdfb SAMEA1024927 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050021/ERR050021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050021/ERR050021_2.fastq.gz 3755223 WGS SMRU950-sc-2011-01-27-1061163 RANDOM 201036499;208232044 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050021/ERR050021_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050021/ERR050021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050021/6680_6#14.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050021/ERR050021_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050021/ERR050021_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050021/6680_6#14.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 519958015 ERS020460 ERX027081 GENOMIC 3178650 563283450 2011-11-07 SC_RUN_6680_6#14 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050021/6680_6#14.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR084230 SC_EXP_7038_7#4 246 3ae736aba55a7e5f684d30d1402a4e3c 1313 b04d64a3127edf32d11bc60ae53be1d1;74a258981d55ad4fe7295aaa9ed41b4f SAMEA1029450 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084230/ERR084230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084230/ERR084230_2.fastq.gz 5913069 WGS SMRU3004-sc-2011-01-27-1063217 RANDOM 372845323;385493728 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084230/ERR084230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR084/ERR084230/ERR084230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084230/7038_7#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084230/ERR084230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR084/ERR084230/ERR084230_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR084/ERR084230/7038_7#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 1465678589 ERS022514 ERX061996 GENOMIC 3811757 886960350 2012-02-07 SC_RUN_7038_7#4 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR084/ERR084230/7038_7#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA087390 Streptococcus pneumoniae Streptococcus pneumoniae ERR050016 SC_EXP_6680_6#9 233 95024f7583bee9c16fc678f1a8a37a7b 1313 5221874897fd2579601ae256bc93163e;bce5a1f8b86be3ad9f276149c0b48818 SAMEA1024803 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050016/ERR050016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050016/ERR050016_2.fastq.gz 13408764 WGS SMRU945-sc-2011-01-27-1061158 RANDOM 717771644;750105156 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050016/ERR050016_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050016/ERR050016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050016/6680_6#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050016/ERR050016_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR050/ERR050016/ERR050016_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR050/ERR050016/6680_6#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 1824333387 ERS020455 ERX027076 GENOMIC 3178645 2011314600 2011-11-07 SC_RUN_6680_6#9 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR050/ERR050016/6680_6#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA063699 Streptococcus pneumoniae Streptococcus pneumoniae ERR049943 SC_EXP_6664_1#8 221 6094d9bb424c8485b51c656e5b2ac29c 1313 4dd27389dd8c46951661eb9281fe6203;b5c8eaa85b466e6a9370c1247b9fccf8 SAMEA1023809 2011-10-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049943/ERR049943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049943/ERR049943_2.fastq.gz 8616405 WGS SMRU224-sc-2011-01-27-1060413 RANDOM 498958456;523121367 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049943/ERR049943_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049943/ERR049943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049943/6664_1#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049943/ERR049943_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049943/ERR049943_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049943/6664_1#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 1258639138 ERS019382 ERX027003 GENOMIC 2950562 1292460750 2011-10-25 SC_RUN_6664_1#8 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049943/6664_1#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063699 ERR049124 SC_EXP_6649_8#22 219 19139f49da60b7fa80f324fe4a968a90 1313 e80fc49fa4d9cb72124c5415d5b38fcb;9a7e84c8310cb21913b4f28aac8cac77 SAMEA1024181 2011-10-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049124/ERR049124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049124/ERR049124_2.fastq.gz 5910832 WGS SMRU190-sc-2011-01-27-1060379 RANDOM 332938873;343825459 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049124/ERR049124_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR049/ERR049124/ERR049124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049124/6649_8#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049124/ERR049124_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR049/ERR049124/ERR049124_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR049/ERR049124/6649_8#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 848919248 ERS019348 ERX026191 GENOMIC 2950523 886624800 2011-10-18 SC_RUN_6649_8#22 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR049/ERR049124/6649_8#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA063578 ERR039590 SC_EXP_6259_6#7 172 f2ec30af02e3cb427d630533641670f4 1313 ba50b1202a45bde8d8c02f9adfd6420c;de27bd4406c95b2348788c0afaba75be SAMEA974624 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039590/ERR039590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039590/ERR039590_2.fastq.gz 5506281 WGS SMRU31-sc-2011-01-27-1026456 RANDOM 286306464;294095240 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039590/ERR039590_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039590/ERR039590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039590/6259_6#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039590/ERR039590_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039590/ERR039590_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039590/6259_6#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 739526389 ERS019189 ERX016763 GENOMIC 2590909 825942150 2011-07-27 SC_RUN_6259_6#7 61 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039590/6259_6#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR072221 SC_EXP_7054_5#24 231 500edeaaa2bda72c8a120b6b8db0c321 1313 38a2b35e71c9fbc901dd2b85c600fdc5;4303b7f58b31df64aacef289895d3758 SAMEA1029226 2012-01-31 ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072221/ERR072221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072221/ERR072221_2.fastq.gz 5016083 WGS SMRU3072-sc-2011-01-27-1063285 RANDOM 311826028;327766039 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072221/ERR072221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR072/ERR072221/ERR072221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072221/7054_5#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072221/ERR072221_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR072/ERR072221/ERR072221_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR072/ERR072221/7054_5#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 803576202 ERS022582 ERX049987 GENOMIC 3888016 752412450 2012-01-31 SC_RUN_7054_5#24 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR072/ERR072221/7054_5#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA083877 Streptococcus pneumoniae Streptococcus pneumoniae ERR039574 SC_EXP_6259_5#15 197 41a24e4fcab073b8a11e34bd0cd4a257 1313 507b6eceb116fb742f64e7699411ea57;7ac36f68db05d9715b2f17e0effccb76 SAMEA974676 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039574/ERR039574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039574/ERR039574_2.fastq.gz 3928869 WGS SMRU15-sc-2011-01-27-1026440 RANDOM 214665737;222514448 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039574/ERR039574_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039574/ERR039574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039574/6259_5#15.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039574/ERR039574_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039574/ERR039574_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039574/6259_5#15.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 555873972 ERS019173 ERX016747 GENOMIC 2590859 589330350 2011-07-27 SC_RUN_6259_5#15 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039574/6259_5#15.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR2090854 SC_EXP_22841_2#123 412 0126c0e217b429357ab9e43f8421e5fd;990773c56cfa44ae39d88f69dd1febd1 1313 c76665d840cb3d914a1d81983c50a466;2ac01c9fec08d9925177cd95581d7a9c SAMEA104035703 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090854/ERR2090854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090854/ERR2090854_2.fastq.gz 2335754 WGS b8fd4220-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 52990039;57231259 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090854/ERR2090854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090854/ERR2090854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090854/22841_2#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090854/22841_2#123.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090854/ERR2090854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090854/ERR2090854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090854/22841_2#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090854/22841_2#123.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76497135;3886 ERS1699596 ERX2147648 GENOMIC DN483654V:D4 291969250 2017-08-08 SC_RUN_22841_2#123 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090854/22841_2#123.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090854/22841_2#123.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#123 ERR2090801 SC_EXP_22841_2#70 402 9d4378cabac3ecfe550f19fb25732469;8d1254cfae75050ab1b68be6ee9288d3 1313 61c6b31b6ec3c702fc117f3a8286f68b;6cc7a45079df1262f89551f0f229d263 SAMEA104035649 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090801/ERR2090801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090801/ERR2090801_2.fastq.gz 2702326 WGS b26099d0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 60929341;62621195 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090801/ERR2090801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2090801/ERR2090801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090801/22841_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090801/22841_2#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090801/ERR2090801_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/001/ERR2090801/ERR2090801_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090801/22841_2#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090801/22841_2#70.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85998997;4473 ERS1699542 ERX2147595 GENOMIC DN483653U:F9 337790750 2017-08-08 SC_RUN_22841_2#70 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090801/22841_2#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090801/22841_2#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#70 ERR2089482 SC_EXP_21999_8#37 468 3b5a45766d98db57703182d3f7b4416c;67cfa0e6e549ff23c51c0e4d2aa9709b 1313 68906255680c6102a7ee5c331588f6e0;4d91fbfdaee895d42973189695f661e8 SAMEA104154747 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089482/ERR2089482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089482/ERR2089482_2.fastq.gz 2638754 WGS 708cf050-c37a-11e6-b158-3c4a9275d6c8 RANDOM 47571297;50163530 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089482/ERR2089482_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089482/ERR2089482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089482/21999_8#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089482/21999_8#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089482/ERR2089482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089482/ERR2089482_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089482/21999_8#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089482/21999_8#37.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65850708;4360 ERS1813765 ERX2146276 GENOMIC DN476959T:E5 329844250 2017-08-08 SC_RUN_21999_8#37 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089482/21999_8#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089482/21999_8#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#37 ERR2089359 SC_EXP_21999_7#97 469 9b0b952b6f75a74119aa0142b55ed51c;490d3e0aee3142b016d36971afe58632 1313 0493d7115a106e16d8f753c6ac679881;df131b7d6eeb413085512343668eedb9 SAMEA104154624 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089359/ERR2089359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089359/ERR2089359_2.fastq.gz 2341644 WGS 651e74a0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 46468103;50607581 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089359/ERR2089359_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/009/ERR2089359/ERR2089359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089359/21999_7#97.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089359/21999_7#97.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089359/ERR2089359_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/009/ERR2089359/ERR2089359_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089359/21999_7#97.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089359/21999_7#97.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66296302;3924 ERS1813642 ERX2146153 GENOMIC DN476874P:B1 292705500 2017-08-08 SC_RUN_21999_7#97 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089359/21999_7#97.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089359/21999_7#97.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#97 ERR1788418 SC_EXP_21127_2#32 462 95b90440a6b98289b04db55bda4f309c;1898ca60ee2d731c63f021e8f4288576 1313 aa20de0489c0b4959836efe96bdb614e;8e51706663bbd35343146c85ec5eceeb SAMEA4388249 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788418/ERR1788418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788418/ERR1788418_2.fastq.gz 2412276 WGS 4cfe7b30-5256-11e6-9a3d-3c4a9275d6c8 RANDOM 50747369;50431238 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788418/ERR1788418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/008/ERR1788418/ERR1788418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788418/21127_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788418/21127_2#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788418/ERR1788418_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/008/ERR1788418/ERR1788418_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788418/21127_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788418/21127_2#32.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69971144;4063 ERS1299698 ERX1852141 GENOMIC DN465286P:H4 301534500 2017-01-11 SC_RUN_21127_2#32 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788418/21127_2#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788418/21127_2#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#32 ERR1214698 SC_EXP_18090_5#34 500 db22c848835f42952e3c605d3922c982;d19ed52f04e20dc2736bb449744c6e5c 1313 fc2ff933fda591a4a2c2d4fc78f38e20;4cbba3ea6e606c62cea77891daba92ec SAMEA3353316 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214698/ERR1214698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214698/ERR1214698_2.fastq.gz 7371950 WGS GPS_ZA_carriage_SP1311-sc-2277914 RANDOM 150334351;163401234 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214698/ERR1214698_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214698/ERR1214698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214698/18090_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214698/18090_5#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214698/ERR1214698_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214698/ERR1214698_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214698/18090_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214698/18090_5#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 234202260;12069 ERS707671 ERX1286911 GENOMIC 15112088 921493750 2016-01-19 SC_RUN_18090_5#34 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214698/18090_5#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214698/18090_5#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_5#34 ERR1756450 SC_EXP_20925_3#65 405 fb2faac6bfccf2a197225b745188ba3c;07bba0a672024a6be332a42181d57459 1313 1122315afd0623f61cdd2a7b8bd12864;075813cb4f2e5a822ea48824d9f7d95a SAMEA4034892 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756450/ERR1756450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756450/ERR1756450_2.fastq.gz 5729150 WGS 3d08da50-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 106278020;112863650 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756450/ERR1756450_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/000/ERR1756450/ERR1756450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756450/20925_3#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756450/20925_3#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/000/ERR1756450/ERR1756450_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/000/ERR1756450/ERR1756450_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756450/20925_3#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756450/20925_3#65.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 165076272;9507 ERS1206002 ERX1823470 GENOMIC DN461288B:B9 716143750 2016-12-13 SC_RUN_20925_3#65 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756450/20925_3#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756450/20925_3#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#65 ERR1214654 SC_EXP_18090_2#146 454 25cb5c47f694115a5c4bf99c0cd05eec;3e71ccc2b6ce84783e0a9444d8c54d4f 1313 ba3dd5fa6e9b6cc09e507db7632d0592;f748de86235905e7e7d812a9533f8f75 SAMEA3431606 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214654/ERR1214654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214654/ERR1214654_2.fastq.gz 2657998 WGS GPS_HK_149-sc-2296814 RANDOM 51833073;56543138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214654/ERR1214654_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/004/ERR1214654/ERR1214654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214654/18090_2#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214654/18090_2#146.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/004/ERR1214654/ERR1214654_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/004/ERR1214654/ERR1214654_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214654/18090_2#146.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214654/18090_2#146.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77204119;4486 ERS740891 ERX1286867 GENOMIC 15080066 332249750 2016-01-19 SC_RUN_18090_2#146 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214654/18090_2#146.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214654/18090_2#146.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#146 ERR1214653 SC_EXP_18090_2#145 454 f2c45217da4fbdfb52f10cf9de88c7d1;dc93b8a35fd4040f316112508e7ffec6 1313 b00b68005e5c62d5b29144a181ee9b7a;c6bd1b3c2f5f2f03d0a95d69c8564b7a SAMEA3431605 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214653/ERR1214653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214653/ERR1214653_2.fastq.gz 2687040 WGS GPS_HK_148-sc-2296812 RANDOM 51977099;55905088 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214653/ERR1214653_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/003/ERR1214653/ERR1214653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214653/18090_2#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214653/18090_2#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/003/ERR1214653/ERR1214653_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/003/ERR1214653/ERR1214653_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214653/18090_2#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214653/18090_2#145.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76280732;4519 ERS740890 ERX1286866 GENOMIC 15080054 335880000 2016-01-19 SC_RUN_18090_2#145 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214653/18090_2#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214653/18090_2#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#145 ERR1202485 SC_EXP_17966_5#35 464 cf0c8bb481cb98974ebb20aa757f1af1;f8fc84129aba3afea8aa1b98a7647153 1313 0774c94348110fe96bb1cebebddcb479;343c170f32ec7b5b4468e25f2b261289 SAMEA3390067 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202485/ERR1202485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202485/ERR1202485_2.fastq.gz 1938264 WGS GPS_MW_D27149-sc-2296329 RANDOM 33898941;34783398 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202485/ERR1202485_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/005/ERR1202485/ERR1202485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202485/17966_5#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202485/17966_5#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/005/ERR1202485/ERR1202485_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/005/ERR1202485/ERR1202485_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202485/17966_5#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202485/17966_5#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 47714507;3314 ERS726170 ERX1274727 GENOMIC 15025483 242283000 2016-01-12 SC_RUN_17966_5#35 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202485/17966_5#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202485/17966_5#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17966_5#35 ERR1202168 SC_EXP_17870_7#98 463 f7cce7ab2e2ddbabf757ff43711e8b7c;887c8cafd7320e17d3ebb18eeab1e37e 1313 0a93d3398c7d4a605897c5dbd99c5855;69e5e0ce612e32253f3850c681c3a7b7 SAMEA3389399 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202168/ERR1202168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202168/ERR1202168_2.fastq.gz 2402416 WGS GPS_MW_BND1G1-sc-2295874 RANDOM 44284599;46317138 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202168/ERR1202168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/008/ERR1202168/ERR1202168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202168/17870_7#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202168/17870_7#98.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202168/ERR1202168_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/008/ERR1202168/ERR1202168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202168/17870_7#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202168/17870_7#98.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 67320468;4087 ERS725502 ERX1274410 GENOMIC 14978395 300302000 2016-01-12 SC_RUN_17870_7#98 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202168/17870_7#98.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202168/17870_7#98.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#98 ERR1202136 SC_EXP_17870_7#66 463 01775ebb41a600c6723c850c3bb5d290;25cf38b3b9d2f2625d7b0c0d5789849a 1313 94d3b806e9864986b35d455156db1fb1;63cce0eff23f35d7bbe16b7941d97bb8 SAMEA3389325 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202136/ERR1202136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202136/ERR1202136_2.fastq.gz 3087822 WGS GPS_MW_BND1ED-sc-2295800 RANDOM 58839164;60207654 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202136/ERR1202136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202136/ERR1202136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202136/17870_7#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202136/17870_7#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202136/ERR1202136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202136/ERR1202136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202136/17870_7#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202136/17870_7#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 89596880;5100 ERS725428 ERX1274378 GENOMIC 14978294 385977750 2016-01-12 SC_RUN_17870_7#66 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202136/17870_7#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202136/17870_7#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#66 ERR1202419 SC_EXP_17870_8#159 447 b1c001d97e365c5b3eb6394afc31902a;00fb426a1d882c43f7089d0fb4990225 1313 aa9e181685c11e96719e2a38408d5051;4a5885f36c2bd277c5590197ecdd208b SAMEA3389941 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202419/ERR1202419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202419/ERR1202419_2.fastq.gz 2631914 WGS GPS_MW_BHA1I1_R1-sc-2296187 RANDOM 48269756;51132991 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202419/ERR1202419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/009/ERR1202419/ERR1202419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202419/17870_8#159.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202419/17870_8#159.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202419/ERR1202419_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/009/ERR1202419/ERR1202419_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202419/17870_8#159.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202419/17870_8#159.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74763094;4440 ERS726044 ERX1274661 GENOMIC 14977666 328989250 2016-01-12 SC_RUN_17870_8#159 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202419/17870_8#159.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202419/17870_8#159.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_8#159 ERR1202166 SC_EXP_17870_7#96 463 9ca3ddd503e5d7b4de81af1bb133d8c1;9a16fcdbcc2379f3b3e97d8d5e323901 1313 37a0f49703d2a5d822ddee9a26cab3e4;3dc14f98cec800f01b77b9ed698b32b4 SAMEA3389395 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202166/ERR1202166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202166/ERR1202166_2.fastq.gz 2142964 WGS GPS_MW_BND1F3-sc-2295870 RANDOM 41124809;43355314 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202166/ERR1202166_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/006/ERR1202166/ERR1202166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202166/17870_7#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202166/17870_7#96.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202166/ERR1202166_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/006/ERR1202166/ERR1202166_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202166/17870_7#96.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202166/17870_7#96.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 63002718;3620 ERS725498 ERX1274408 GENOMIC 14978371 267870500 2016-01-12 SC_RUN_17870_7#96 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202166/17870_7#96.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202166/17870_7#96.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#96 ERR1192200 SC_EXP_17794_8#189 441 bb7612d93bb904551de7e21c5af97636;a274a50ef026edc888024a9440a9f273 1313 23117614aa2804c3c96b9bce00cffb74;10f6830bc2da10e9021b2bc4416483ae SAMEA3389168 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192200/ERR1192200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192200/ERR1192200_2.fastq.gz 2926428 WGS GPS_MW_153622-sc-2295641 RANDOM 53568460;58386363 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192200/ERR1192200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1192200/ERR1192200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192200/17794_8#189.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192200/17794_8#189.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1192200/ERR1192200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1192200/ERR1192200_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192200/17794_8#189.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192200/17794_8#189.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87544120;4865 ERS725271 ERX1265584 GENOMIC 14941711 365803500 2015-12-17 SC_RUN_17794_8#189 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192200/17794_8#189.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192200/17794_8#189.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#189 ERR1192199 SC_EXP_17794_8#188 441 92fd8fa773e70a37044d53ba8dc39e94;91ba4ab4b5ab4f6c685b0214552e37c8 1313 facf65f2fc810ac589bc30317921927f;fc6c0e0daf2e81c2f0640cd10c1eb94f SAMEA3389166 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192199/ERR1192199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192199/ERR1192199_2.fastq.gz 3027164 WGS GPS_MW_153620-sc-2295639 RANDOM 53926542;58343640 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192199/ERR1192199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1192199/ERR1192199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192199/17794_8#188.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192199/17794_8#188.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1192199/ERR1192199_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1192199/ERR1192199_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192199/17794_8#188.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192199/17794_8#188.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 87959596;5058 ERS725269 ERX1265583 GENOMIC 14941699 378395500 2015-12-17 SC_RUN_17794_8#188 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192199/17794_8#188.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192199/17794_8#188.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#188 ERR1192185 SC_EXP_17794_8#174 441 efe24119519cc0b112d4e9aefceedddf;2283d412539e7769164974ec1438c56b 1313 f58fdea85d7c4165584c4d5621c670f8;5fd5ce4db3d065ab4817ea16761a8328 SAMEA3389146 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1192185/ERR1192185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1192185/ERR1192185_2.fastq.gz 2951166 WGS GPS_MW_155816-sc-2295619 RANDOM 55530107;61424397 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1192185/ERR1192185_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1192185/ERR1192185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192185/17794_8#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192185/17794_8#174.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1192185/ERR1192185_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1192185/ERR1192185_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192185/17794_8#174.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192185/17794_8#174.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91609802;4889 ERS725249 ERX1265569 GENOMIC 14941721 368895750 2015-12-17 SC_RUN_17794_8#174 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192185/17794_8#174.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192185/17794_8#174.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#174 ERR1192042 SC_EXP_17794_8#31 441 a48da31c41ad4818a89d9fa7a7e2740e;2ec8e841868677cace29f89418797342 1313 bc709096e226318850cbe3ecc5d426c5;b7cecc041ca3ad9b131d02b36ea5f21b SAMEA3381531 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192042/ERR1192042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192042/ERR1192042_2.fastq.gz 2475482 WGS GPS_GM_2064-sc-2279409 RANDOM 47733453;49088198 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192042/ERR1192042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1192042/ERR1192042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192042/17794_8#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192042/17794_8#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192042/ERR1192042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1192042/ERR1192042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192042/17794_8#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192042/17794_8#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74816800;4147 ERS719790 ERX1265426 GENOMIC 14941606 309435250 2015-12-17 SC_RUN_17794_8#31 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192042/17794_8#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192042/17794_8#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_8#31 ERR1065638 SC_EXP_17138_5#64 500 31d347f4650f27d047aa3d1871f229d9;812a26911e9fde8e50c209816946e63c 1313 2b2dd5b97a5be24b603790f16b22e72b;af2bbc310b769a67d14700af8509b2f4 SAMEA3232836 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065638/ERR1065638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065638/ERR1065638_2.fastq.gz 1153958 WGS GPS_NP_4128-sc-2205750 RANDOM 24144049;23049940 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065638/ERR1065638_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065638/ERR1065638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065638/17138_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065638/17138_5#64.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065638/ERR1065638_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065638/ERR1065638_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065638/17138_5#64.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065638/17138_5#64.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 32366888;2026 ERS654047 ERX1145788 GENOMIC 14451918 144244750 2015-10-13 SC_RUN_17138_5#64 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065638/17138_5#64.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065638/17138_5#64.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#64 ERR980164 SC_EXP_16288_6#43 206 4b4041894d1666bbb474df7966439226;21ee9a2d91f9ba05623d2dfa468494af 1313 c443a13327d5f00c62fa5da653e7b653;9ba4bd7d3c8db7f90c3140cfe2d9e763 SAMEA3232635 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980164/ERR980164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980164/ERR980164_2.fastq.gz 2591038 WGS GPS_NP_3626-sc-2205554 RANDOM 87881213;85179392 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980164/ERR980164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980164/ERR980164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980164/16288_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980164/16288_6#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980164/ERR980164_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980164/ERR980164_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980164/16288_6#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980164/16288_6#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 137246333;4382 ERS653846 ERX1057036 GENOMIC 13303935 259103800 2015-08-12 SC_RUN_16288_6#43 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980164/16288_6#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980164/16288_6#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_6#43 ERR980043 SC_EXP_16288_5#4 218 ef3fe2721015cb2efa1cd035092af18c;ffcebe44e1cc7ad73ee387b27604eaf5 1313 9ce37d1eddd08abafbf6058312209b02;bcbc6a551e26cb5ae967b58b1ff7d402 SAMEA3232513 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980043/ERR980043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980043/ERR980043_2.fastq.gz 6149208 WGS GPS_NP_4074-sc-2205431 RANDOM 205040209;204917907 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980043/ERR980043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980043/ERR980043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980043/16288_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980043/16288_5#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980043/ERR980043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980043/ERR980043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980043/16288_5#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980043/16288_5#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333030913;10088 ERS653724 ERX1056915 GENOMIC 13296366 614920800 2015-08-12 SC_RUN_16288_5#4 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980043/16288_5#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980043/16288_5#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#4 ERR1065610 SC_EXP_17138_5#36 500 afc9411a4bb0532bacfb14fbb2c2a128;436d8ccbeb50e94da45e256509059f18 1313 85394b1fde54a72acea526133f4d59c1;b039a9de739c20590a2d18dc00d0067e SAMEA3232648 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065610/ERR1065610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065610/ERR1065610_2.fastq.gz 4262546 WGS GPS_NP_3753-sc-2205567 RANDOM 83534202;81286226 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065610/ERR1065610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065610/ERR1065610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065610/17138_5#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065610/17138_5#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065610/ERR1065610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065610/ERR1065610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065610/17138_5#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065610/17138_5#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 119432020;7083 ERS653859 ERX1145760 GENOMIC 14451867 532818250 2015-10-13 SC_RUN_17138_5#36 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065610/17138_5#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065610/17138_5#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_5#36 ERR980065 SC_EXP_16288_5#26 218 bab6d1bcd9c9038c3da2bd4cbd38370b;d08d46f06ecfbbbb42642bdcdfdd684d 1313 3fb135b4b3633a7dede35f7b3558194a;6cccf5a6a0361a62db275cf22829ecaf SAMEA3232535 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980065/ERR980065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980065/ERR980065_2.fastq.gz 3559122 WGS GPS_NP_4129-sc-2205453 RANDOM 121772000;121739924 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980065/ERR980065_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980065/ERR980065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980065/16288_5#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980065/16288_5#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980065/ERR980065_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980065/ERR980065_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980065/16288_5#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980065/16288_5#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 196258168;5826 ERS653746 ERX1056937 GENOMIC 13296345 355912200 2015-08-12 SC_RUN_16288_5#26 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980065/16288_5#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980065/16288_5#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_5#26 ERR979947 SC_EXP_16288_3#74 234 726818c0bd7126954833a6fb52e7b0ab;e0299e13f035442c69a642718918126d 1313 86b97ec83b9478a863330bb1a7c8fbe1;1b2dc5c2a383a648f5b6963c46f9de80 SAMEA3232417 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979947/ERR979947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979947/ERR979947_2.fastq.gz 4091786 WGS GPS_NP_2037-sc-2205335 RANDOM 133009839;130782960 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979947/ERR979947_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR979/ERR979947/ERR979947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979947/16288_3#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979947/16288_3#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979947/ERR979947_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR979/ERR979947/ERR979947_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979947/16288_3#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR979/ERR979947/16288_3#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 214301902;6679 ERS653628 ERX1056819 GENOMIC 13296157 409178600 2015-08-12 SC_RUN_16288_3#74 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979947/16288_3#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR979/ERR979947/16288_3#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_3#74 ERR870058 SC_EXP_15531_4#56 207 dee1bc55278b51619e2f278182d54a37;4a4a7b3ab7fac5a541124f1db3e4edd6 1313 610befd07804c1158636aa3cf9fbc229;f41c937608d9ef1308963cf515e166c1 SAMEA3172798 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870058/ERR870058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870058/ERR870058_2.fastq.gz 4837958 WGS GPS_GM_0929-sc-2190355 RANDOM 190356227;182086325 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870058/ERR870058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870058/ERR870058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870058/15531_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870058/15531_4#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870058/ERR870058_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870058/ERR870058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870058/15531_4#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870058/15531_4#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 309152465;7677 ERS627041 ERX949659 GENOMIC 12882871 483795800 2015-05-06 SC_RUN_15531_4#56 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870058/15531_4#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870058/15531_4#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#56 ERR714175 SC_EXP_14410_4#73 220 8fea704ffa85c13645cbe609071ab29a;b13b8c4e5606435b550132377396cba5 1313 121d86c246e35db0954c93fc968796ae;9f9d6bf1666759c1a729882e1aa8981c SAMEA2627487 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714175/ERR714175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714175/ERR714175_2.fastq.gz 5546312 WGS GPS_GM_0336-sc-2003431 RANDOM 195760840;196522499 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714175/ERR714175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714175/ERR714175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714175/14410_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714175/14410_4#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714175/ERR714175_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714175/ERR714175_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714175/14410_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714175/14410_4#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320522049;9006 ERS497386 ERX658097 GENOMIC 11858252 554631200 2015-01-08 SC_RUN_14410_4#73 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714175/14410_4#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714175/14410_4#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#73 ERR633022 SC_EXP_13415_7#93 225 bead76902836c84c7ecf7e63b69956b0;ba30ac48f82bc85905a6f3492e3e1142 1313 8149ab27b44b33b02ad57ef3048d6047;a8e607c0af51d2847917716a143e87ee SAMEA2554204 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633022/ERR633022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633022/ERR633022_2.fastq.gz 3978734 WGS GPS_ZA_1093-sc-1951242 RANDOM 134920865;138857816 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633022/ERR633022_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633022/ERR633022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633022/13415_7#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633022/13415_7#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633022/ERR633022_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633022/ERR633022_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633022/13415_7#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633022/13415_7#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 225720850;6507 ERS464705 ERX589576 GENOMIC 10646346 397873400 2014-09-23 SC_RUN_13415_7#93 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633022/13415_7#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633022/13415_7#93.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#93 ERR433503 SC_EXP_11657_1#72 250 c794e833aca811e93163acd79455147a;7fa1210c14df4d81f2ea96a74dd6b007 1313 4243685488814c756fd11d0a4c1b3076;90de77672480d3ca980b485414f35680 SAMEA2147151 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433503/ERR433503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433503/ERR433503_2.fastq.gz 4402050 WGS 3015_00-sc-2013-07-03T13:39:44Z-1659511 RANDOM 146349597;151230563 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433503/ERR433503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433503/ERR433503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433503/11657_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433503/11657_1#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433503/ERR433503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433503/ERR433503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433503/11657_1#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433503/11657_1#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 244081098;7138 ERS322679 ERX399778 GENOMIC 8735071 440205000 2014-02-18 SC_RUN_11657_1#72 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433503/11657_1#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433503/11657_1#72.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_1#72 ERR662449 SC_EXP_13710_2#61 196 889fd2f5859461a9c4b4b60b6b9a3077;ceea7002263ff6a2e4a2a6e90fd4d185 1313 6ebfee30f256a962eea4d56b0383d96b;50dc3174e3c9fe339eba50a80cd3b3a1 SAMEA2521843 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662449/ERR662449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662449/ERR662449_2.fastq.gz 6610452 WGS 2013215464-sc-1947138 RANDOM 220788684;229190622 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662449/ERR662449_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662449/ERR662449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662449/13710_2#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662449/13710_2#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662449/ERR662449_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662449/ERR662449_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662449/13710_2#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662449/13710_2#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 375279668;10613 ERS455383 ERX618725 GENOMIC 11100494 661045200 2014-10-28 SC_RUN_13710_2#61 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662449/13710_2#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662449/13710_2#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#61 ERR129047 SC_EXP_7622_2#23 219 baa944c6d3ea4c2cd8ff167027fe463a 1313 48aea2e4881b490c4835c99d8ed50134;e6f1f3aaa7b45bc8174ceb86c39715c8 SAMEA1463188 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129047/ERR129047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129047/ERR129047_2.fastq.gz 3091239 WGS BR1074-sc-2011-11-08T10:06:38Z-1298306 RANDOM 330008790;339859821 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129047/ERR129047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129047/ERR129047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129047/7622_2#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129047/ERR129047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129047/ERR129047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129047/7622_2#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 644571654 ERS069938 ERX105188 GENOMIC 4336456 618247800 2012-05-28 SC_RUN_7622_2#23 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129047/7622_2#23.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR311092 SC_EXP_9716_7#29 219 d97710117474f29127462a179a73248f 1313 0dfbe7733052559e95553bcb030740a9;69cd7970408646420157f684c6e5a4cf SAMEA2052496 2013-07-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311092/ERR311092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311092/ERR311092_2.fastq.gz 1831342 WGS 1330-sc-2013-02-18T14:48:56Z-1562107 RANDOM 121365911;131436596 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311092/ERR311092_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR311/ERR311092/ERR311092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR311/ERR311092/9716_7#29.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR311/ERR311092/ERR311092_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR311/ERR311092/ERR311092_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR311/ERR311092/9716_7#29.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 347353084 ERS215320 ERX284373 GENOMIC 7155502 366268400 2013-07-08 SC_RUN_9716_7#29 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR311/ERR311092/9716_7#29.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA237526 9716_7#29 ERR129187 SC_EXP_7622_5#67 225 7064fa92802e627683f34ce6493db8fb 1313 00473827f2cf2a7ce80ee5c2792e68b0;832c7ee592eb6fb3e38d2399962e444f SAMEA1463157 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129187/ERR129187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129187/ERR129187_2.fastq.gz 3068842 WGS ND6000-sc-2011-11-08T10:08:20Z-1298446 RANDOM 326399550;336254792 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129187/ERR129187_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129187/ERR129187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129187/7622_5#67.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129187/ERR129187_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129187/ERR129187_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129187/7622_5#67.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 642179768 ERS070078 ERX105328 GENOMIC 4336596 613768400 2012-05-28 SC_RUN_7622_5#67 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129187/7622_5#67.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR054473 SC_EXP_6753_3#13 216 d6620d522dcfd9e16850137a98be0fc3 1313 1924d220852709b841329c802b8e2e3b;fa07b75c453734d89083b7ecbdd07877 SAMEA1025589 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054473/ERR054473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054473/ERR054473_2.fastq.gz 4855591 WGS SMRU1525-sc-2011-01-27-1061738 RANDOM 323332884;340366262 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054473/ERR054473_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054473/ERR054473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054473/6753_3#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054473/ERR054473_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054473/ERR054473_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054473/6753_3#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 825559942 ERS021035 ERX031519 GENOMIC 3414210 728338650 2011-11-15 SC_RUN_6753_3#13 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054473/6753_3#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR425523 SC_EXP_11511_8#89 288 47f975f0a29847ebb0959b91a98623f0;57765203719832b5c92d8ffe61c29fd6 1313 95fd692c87f19682a2dd02b7bb54beb3;08159d447c7a562912d277fa33addf47 SAMEA2204204 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425523/ERR425523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425523/ERR425523_2.fastq.gz 4798412 WGS PATH5915-sc-2013-10-09T11:57:14Z-1712797 RANDOM 155194361;158070986 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425523/ERR425523_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425523/ERR425523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425523/11511_8#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425523/11511_8#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425523/ERR425523_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425523/ERR425523_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425523/11511_8#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425523/11511_8#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 258298505;7848 ERS356715 ERX391798 GENOMIC 8529194 479841200 2014-02-10 SC_RUN_11511_8#89 94 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425523/11511_8#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425523/11511_8#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_8#89 ERR069630 SC_EXP_7011_4#20 206 d696c1f7c583ed197a7bedf833f50136 1313 06a7d7c3b1c254c9c18764f2d6c5c56c;b909ef595d2c700724c5bc75d2576e29 SAMEA1028892 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069630/ERR069630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069630/ERR069630_2.fastq.gz 3767524 WGS SMRU2780-sc-2011-01-27-1062993 RANDOM 223692205;229511142 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069630/ERR069630_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069630/ERR069630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069630/7011_4#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069630/ERR069630_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069630/ERR069630_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069630/7011_4#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 587271023 ERS022290 ERX047483 GENOMIC 3758451 565128600 2012-01-19 SC_RUN_7011_4#20 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069630/7011_4#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR069758 SC_EXP_6999_4#7 244 08e1424a9ee929095cb456c085a2f24f 1313 ba6ed4b7cfa1af9a9072751a9024d52c;bb7b362f3a2c377da401b3cd3e4a095d SAMEA1032680 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069758/ERR069758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069758/ERR069758_2.fastq.gz 5326834 WGS 095344-sc-2011-08-01T09:45:17Z-1250129 RANDOM 301201085;306947775 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069758/ERR069758_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069758/ERR069758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069758/6999_4#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069758/ERR069758_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069758/ERR069758_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069758/6999_4#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 777126625 ERS044064 ERX047611 GENOMIC 3736980 799025100 2012-01-19 SC_RUN_6999_4#7 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069758/6999_4#7.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR045020 SC_EXP_6472_7#19 249 0f4122383f97d675f6cd2de49cfb0566 1313 27c4cf4cd56b1556d6f6110df2d05d42;b34e6ceef4b042b53c3f8b2597d9636d SAMEA1026584 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045020/ERR045020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045020/ERR045020_2.fastq.gz 6985973 WGS UoS2235-sc-2011-02-14-1078223 RANDOM 332940213;343737852 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045020/ERR045020_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045020/ERR045020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045020/6472_7#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045020/ERR045020_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045020/ERR045020_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045020/6472_7#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 853781819 ERS023169 ERX022128 GENOMIC 2732391 1047895950 2011-09-06 SC_RUN_6472_7#19 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045020/6472_7#19.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6472_7#19 ERR039566 SC_EXP_6259_5#7 197 7a35f1a2d82b942acb5ab9ef5c281f5f 1313 38e6f03a43c65720a7c2490f0e9be1de;3c1c6d886957bdac5f6005f0158f5477 SAMEA974687 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039566/ERR039566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039566/ERR039566_2.fastq.gz 4453258 WGS SMRU7-sc-2011-01-27-1026432 RANDOM 242796430;252633193 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039566/ERR039566_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039566/ERR039566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039566/6259_5#7.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039566/ERR039566_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039566/ERR039566_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039566/6259_5#7.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 622972202 ERS019165 ERX016739 GENOMIC 2590851 667988700 2011-07-27 SC_RUN_6259_5#7 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039566/6259_5#7.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR056759 SC_EXP_6805_2#5 234 fda8c1c82524c45dfebc57a357b575f6 1313 516394925b3ec7a438f2fb71ea18200e;a45bc847becdd8f5dfba8857db535be3 SAMEA1025523 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056759/ERR056759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056759/ERR056759_2.fastq.gz 5330827 WGS SMRU1421-sc-2011-01-27-1061634 RANDOM 280260352;292334647 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056759/ERR056759_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056759/ERR056759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056759/6805_2#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056759/ERR056759_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056759/ERR056759_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056759/6805_2#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 709728316 ERS020931 ERX034603 GENOMIC 3441179 799624050 2011-11-29 SC_RUN_6805_2#5 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056759/6805_2#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR039565 SC_EXP_6259_5#6 197 f4a2f385af2734a0cbad061d708266eb 1313 0663d5e5148aaf90b0e524c5c752ecb3;c1f74d074e9e56dabf0311cc0e7f2770 SAMEA974686 2011-07-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039565/ERR039565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039565/ERR039565_2.fastq.gz 4608167 WGS SMRU6-sc-2011-01-27-1026431 RANDOM 256214935;267105683 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039565/ERR039565_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR039/ERR039565/ERR039565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039565/6259_5#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039565/ERR039565_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR039/ERR039565/ERR039565_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR039/ERR039565/6259_5#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 662042880 ERS019164 ERX016738 GENOMIC 2590850 691225050 2011-07-27 SC_RUN_6259_5#6 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR039/ERR039565/6259_5#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA040607 ERR1422516 SC_EXP_19084_8#3 417 4599e3412707a75a99e96232404adb97;ba0dab588c498ef1e4b4724905a09acc 1313 f278586e56322d5defc5b53f9ed41e0b;76ce5ce0f1cc51c0c92b5e6c3fe4067c SAMEA3714340 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422516/ERR1422516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422516/ERR1422516_2.fastq.gz 2765428 WGS 4cd24060-41bd-11e5-998e-3c4a9275d6c6 RANDOM 63466359;63344352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422516/ERR1422516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422516/ERR1422516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422516/19084_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422516/19084_8#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422516/ERR1422516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422516/ERR1422516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422516/19084_8#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422516/19084_8#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 91533419;4571 ERS1021489 ERX1493098 GENOMIC 15758401 345678500 2016-05-24 SC_RUN_19084_8#3 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422516/19084_8#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422516/19084_8#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#3 ERR1453778 SC_EXP_19341_3#130 450 0ba42088578b1d0d80071cef21a55904;cccc650267fc383bacf877518bb2698c 1313 4721163b08745a7ad00ad7453f3aa5b7;f5ae83b87d7b20a1aba518e6365765ed SAMEA3714095 2016-06-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453778/ERR1453778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453778/ERR1453778_2.fastq.gz 2597482 WGS 429ce0f0-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 52149089;60208060 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453778/ERR1453778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR145/008/ERR1453778/ERR1453778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453778/19341_3#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453778/19341_3#130.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453778/ERR1453778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR145/008/ERR1453778/ERR1453778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453778/19341_3#130.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR145/ERR1453778/19341_3#130.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81142050;4411 ERS1021244 ERX1524256 GENOMIC 16008575 324685250 2016-06-14 SC_RUN_19341_3#130 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453778/19341_3#130.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR145/ERR1453778/19341_3#130.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA651406 19341_3#130 ERR1422607 SC_EXP_19084_8#94 448 2ee183497421c58b52d2d3a3fabdb9c5;aeadc3ff3ef90feedb10516f10103c8f 1313 3aa4e7f4323015b77f0c748c7ef55d4d;a17767707be948377d3911ea8ee81af2 SAMEA3714431 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422607/ERR1422607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422607/ERR1422607_2.fastq.gz 2556100 WGS 52096540-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 57951025;58396510 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422607/ERR1422607_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/007/ERR1422607/ERR1422607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422607/19084_8#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422607/19084_8#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422607/ERR1422607_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/007/ERR1422607/ERR1422607_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422607/19084_8#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422607/19084_8#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 84397369;4348 ERS1021580 ERX1493189 GENOMIC 15758518 319512500 2016-05-24 SC_RUN_19084_8#94 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422607/19084_8#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422607/19084_8#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#94 ERR1422529 SC_EXP_19084_8#16 420 f2d8f2a959b30954c9198e6ca2e937d4;76949f05b5cafd2308777c86bb330841 1313 9b47b599a0bbf11911928b118de5c9b7;0d94adcb29f29658ae94ea55f2c64a5b SAMEA3714353 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422529/ERR1422529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422529/ERR1422529_2.fastq.gz 2337182 WGS 4d4a5690-41bd-11e5-998e-3c4a9275d6c6 RANDOM 51828422;51033867 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422529/ERR1422529_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/009/ERR1422529/ERR1422529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422529/19084_8#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422529/19084_8#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422529/ERR1422529_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/009/ERR1422529/ERR1422529_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422529/19084_8#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422529/19084_8#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73905660;3986 ERS1021502 ERX1493111 GENOMIC 15758462 292147750 2016-05-24 SC_RUN_19084_8#16 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422529/19084_8#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422529/19084_8#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_8#16 ERR1422508 SC_EXP_19084_7#179 421 fb70b7254a7902ae57507a73ef66119b;9d59200361b02ec6eaedaecfdc3979e3 1313 5a5708edb19c3c1655021d790d77abdc;7993e1f1336e21a1c3b949d63bbfc814 SAMEA3714332 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422508/ERR1422508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422508/ERR1422508_2.fastq.gz 2090644 WGS 4c8c36b0-41bd-11e5-998e-3c4a9275d6c6 RANDOM 44846530;44606835 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422508/ERR1422508_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/008/ERR1422508/ERR1422508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422508/19084_7#179.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422508/19084_7#179.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422508/ERR1422508_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/008/ERR1422508/ERR1422508_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422508/19084_7#179.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422508/19084_7#179.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64400206;3576 ERS1021481 ERX1493090 GENOMIC 15738151 261330500 2016-05-24 SC_RUN_19084_7#179 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422508/19084_7#179.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422508/19084_7#179.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#179 ERR1422426 SC_EXP_19084_7#97 430 9e1d05f39e5781c9af9cfc03659b9cd4;5c8021dfd0fb100290db5a19be760e8c 1313 89a9c9ba467487031ea0eaa3e9acba10;a08c0a800109bd8d204c3d04c47035aa SAMEA3714250 2016-05-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422426/ERR1422426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422426/ERR1422426_2.fastq.gz 2796272 WGS 49dd6a60-41bd-11e5-a83d-3c4a9275d6c6 RANDOM 59642914;59391993 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422426/ERR1422426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR142/006/ERR1422426/ERR1422426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422426/19084_7#97.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422426/19084_7#97.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422426/ERR1422426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR142/006/ERR1422426/ERR1422426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422426/19084_7#97.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR142/ERR1422426/19084_7#97.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85863405;4666 ERS1021399 ERX1493008 GENOMIC 15738117 349534000 2016-05-24 SC_RUN_19084_7#97 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422426/19084_7#97.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR142/ERR1422426/19084_7#97.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA625439 19084_7#97 ERR1288977 SC_EXP_18456_1#168 459 cb0994fbc68d7b2ec0edfca9c34f848a;d786c78f3f08bdc7dcc1bdac0055b41c 1313 cb2aad9ae138c47af315d57e681c954e;401520503a0e1ea7c8ca7a01a4ab1b7b SAMEA3389344 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288977/ERR1288977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288977/ERR1288977_2.fastq.gz 2187284 WGS GPS_MW_1265_UNC-sc-2295819 RANDOM 46897920;46584344 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288977/ERR1288977_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288977/ERR1288977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288977/18456_1#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288977/18456_1#168.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/007/ERR1288977/ERR1288977_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/007/ERR1288977/ERR1288977_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288977/18456_1#168.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288977/18456_1#168.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 65986888;3738 ERS725447 ERX1360583 GENOMIC 14970411 273410500 2016-02-23 SC_RUN_18456_1#168 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288977/18456_1#168.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288977/18456_1#168.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#168 ERR1288922 SC_EXP_18456_1#113 459 5193c94e092bf560a50d232bdcbb620a;93147a122ed644ef8ff724b83e2ac4ae 1313 c2fd2f612313d6aad99d84b8857ce46c;62534bb4b1a210efbf7db0d392417612 SAMEA3389233 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/002/ERR1288922/ERR1288922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/002/ERR1288922/ERR1288922_2.fastq.gz 2736262 WGS GPS_MW_A9871-sc-2295706 RANDOM 56830655;57449303 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/002/ERR1288922/ERR1288922_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/002/ERR1288922/ERR1288922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288922/18456_1#113.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288922/18456_1#113.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/002/ERR1288922/ERR1288922_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/002/ERR1288922/ERR1288922_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288922/18456_1#113.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288922/18456_1#113.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81357529;4614 ERS725336 ERX1360528 GENOMIC 14970415 342032750 2016-02-23 SC_RUN_18456_1#113 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288922/18456_1#113.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288922/18456_1#113.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#113 ERR1288883 SC_EXP_18456_1#74 459 2aa47cfad7673fb5cb3f07489f8135b1;2d300e526a1a7b65c0b762fdd75e237e 1313 ff1a3a695a2a97926de3cfcee5c38487;1745bda31b37a3c127dfb4e118f6277d SAMEA3389142 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288883/ERR1288883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288883/ERR1288883_2.fastq.gz 2296988 WGS GPS_MW_152363-sc-2295615 RANDOM 55586599;51501717 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288883/ERR1288883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/003/ERR1288883/ERR1288883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288883/18456_1#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288883/18456_1#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/003/ERR1288883/ERR1288883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/003/ERR1288883/ERR1288883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288883/18456_1#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288883/18456_1#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75113447;3811 ERS725245 ERX1360489 GENOMIC 14970301 287123500 2016-02-23 SC_RUN_18456_1#74 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288883/18456_1#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288883/18456_1#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#74 ERR1288827 SC_EXP_18456_1#18 459 8456c847200fa4cba828a5daa3c84f0f;4e99d683b2b42c85de4179f22571b62c 1313 43941b1f17c4530cec3eda463355ce1b;54c8e6c7ec4bbf957e762edcddd30b10 SAMEA3389204 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288827/ERR1288827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288827/ERR1288827_2.fastq.gz 2357068 WGS GPS_MW_154462-sc-2295677 RANDOM 53073957;49803417 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288827/ERR1288827_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288827/ERR1288827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288827/18456_1#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288827/18456_1#18.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/007/ERR1288827/ERR1288827_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/007/ERR1288827/ERR1288827_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288827/18456_1#18.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288827/18456_1#18.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72766615;4012 ERS725307 ERX1360433 GENOMIC 14970294 294633500 2016-02-23 SC_RUN_18456_1#18 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288827/18456_1#18.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288827/18456_1#18.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#18 ERR1288811 SC_EXP_18456_1#2 459 6805c977236a5789749eac031159467b;c291e47e56c1973a6abab464970dfaea 1313 71c9e538bba102836ecd12d2b826eb36;1beca4822d1ffb34ec60f228f18372d1 SAMEA3389172 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288811/ERR1288811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288811/ERR1288811_2.fastq.gz 2327918 WGS GPS_MW_153628-sc-2295645 RANDOM 53233070;47978895 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288811/ERR1288811_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/001/ERR1288811/ERR1288811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288811/18456_1#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288811/18456_1#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288811/ERR1288811_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/001/ERR1288811/ERR1288811_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288811/18456_1#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288811/18456_1#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71443185;3971 ERS725275 ERX1360417 GENOMIC 14970292 290989750 2016-02-23 SC_RUN_18456_1#2 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288811/18456_1#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288811/18456_1#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#2 ERR1288810 SC_EXP_18456_1#1 459 bf861d0580c8dd9ff4254f0746c43f4b;e799f0035842b4b6714be251905c1931 1313 546e30d5b7ab913c723e4790c9c7b0e7;59266a2dc1177ff9180827b5381b65b7 SAMEA3389170 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288810/ERR1288810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288810/ERR1288810_2.fastq.gz 2501576 WGS GPS_MW_153624-sc-2295643 RANDOM 56055697;49261909 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288810/ERR1288810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/000/ERR1288810/ERR1288810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288810/18456_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288810/18456_1#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/000/ERR1288810/ERR1288810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/000/ERR1288810/ERR1288810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288810/18456_1#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288810/18456_1#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74855159;4244 ERS725273 ERX1360416 GENOMIC 14970280 312697000 2016-02-23 SC_RUN_18456_1#1 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288810/18456_1#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288810/18456_1#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#1 ERR1066353 SC_EXP_17175_8#69 467 313055ce05b05aada263675bf90a600e;02c10c18ea01558800f96ac545cb1483 1313 71737d53e7cae12bf57c7ad6993d7753;a6800abed98d786153cc57e1f36f8fa1 SAMEA3354032 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066353/ERR1066353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066353/ERR1066353_2.fastq.gz 5411754 WGS GPS_ZA_2950-sc-2278638 RANDOM 93619860;101658655 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066353/ERR1066353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1066353/ERR1066353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066353/17175_8#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066353/17175_8#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066353/ERR1066353_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1066353/ERR1066353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066353/17175_8#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066353/17175_8#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 153538528;9004 ERS708387 ERX1146503 GENOMIC 14455742 676469250 2015-10-13 SC_RUN_17175_8#69 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066353/17175_8#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066353/17175_8#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#69 ERR1066341 SC_EXP_17175_8#57 467 259971af69e033e221ce8ecd38f6ba53;f6875da4513291e9442a12aa75771b55 1313 b96b5ef07c4d11a0b033804d71c95a63;a6ba55afede47f37ec22fb8cffc9b158 SAMEA3354009 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066341/ERR1066341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066341/ERR1066341_2.fastq.gz 6189752 WGS GPS_ZA_2938-sc-2278615 RANDOM 113806980;117798444 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066341/ERR1066341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1066341/ERR1066341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066341/17175_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066341/17175_8#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1066341/ERR1066341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1066341/ERR1066341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066341/17175_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066341/17175_8#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 182139479;10161 ERS708364 ERX1146491 GENOMIC 14455693 773719000 2015-10-13 SC_RUN_17175_8#57 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066341/17175_8#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066341/17175_8#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#57 ERR1066322 SC_EXP_17175_8#38 467 d10b8bda3e557a04e5a6578675c57c62;280708ba1b96019d7aa40400f1620665 1313 bc800b85473b308cca8e5603eec87bb6;16dc685d585cac3e87e9ab1936057efd SAMEA3353974 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066322/ERR1066322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066322/ERR1066322_2.fastq.gz 4708026 WGS GPS_ZA_2920-sc-2278580 RANDOM 88897294;91893519 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066322/ERR1066322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066322/ERR1066322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066322/17175_8#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066322/17175_8#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066322/ERR1066322_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066322/ERR1066322_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066322/17175_8#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066322/17175_8#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 139177355;7670 ERS708329 ERX1146472 GENOMIC 14455750 588503250 2015-10-13 SC_RUN_17175_8#38 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066322/17175_8#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066322/17175_8#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_8#38 ERR1066212 SC_EXP_17175_7#19 468 cac0228bac02ad85eae030fb74f924d0;7dce9a3529e9b913cba6ec24d6b97a76 1313 5013d8cc0a583a9e0aea0e67af683f09;a29e9b86abcd14127f0717449c64ca6f SAMEA3353936 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066212/ERR1066212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066212/ERR1066212_2.fastq.gz 5186698 WGS GPS_ZA_carriage_SP1876-sc-2278542 RANDOM 93798147;98709774 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066212/ERR1066212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066212/ERR1066212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066212/17175_7#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066212/17175_7#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066212/ERR1066212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066212/ERR1066212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066212/17175_7#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066212/17175_7#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 150022461;8567 ERS708291 ERX1146362 GENOMIC 14427445 648337250 2015-10-13 SC_RUN_17175_7#19 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066212/17175_7#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066212/17175_7#19.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#19 ERR1066042 SC_EXP_17175_5#30 463 266275ac5d88ae9e1500844a0de7df58;a965c47cb972463b781e171e2814d1c0 1313 3a78be7c6fd897ed642d8e780f30c0ed;e19a72029b1145fe13a7f59a457965b8 SAMEA3353596 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066042/ERR1066042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066042/ERR1066042_2.fastq.gz 4515040 WGS GPS_ZA_carriage_SP1641-sc-2278198 RANDOM 86516204;88124810 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066042/ERR1066042_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1066042/ERR1066042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066042/17175_5#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066042/17175_5#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066042/ERR1066042_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1066042/ERR1066042_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066042/17175_5#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066042/17175_5#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 133861544;7515 ERS707951 ERX1146192 GENOMIC 14423465 564380000 2015-10-13 SC_RUN_17175_5#30 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066042/17175_5#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066042/17175_5#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#30 ERR1066136 SC_EXP_17175_6#34 449 2c13451c972465eec510442bc318e833;20412f62c773d1fe6081a3179b8a303f 1313 6741ec3601c63925f4fba2f766a89dcd;de849a92d93cb1168e30128181eb4c3b SAMEA3353782 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066136/ERR1066136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066136/ERR1066136_2.fastq.gz 5712398 WGS GPS_ZA_carriage_SP1737-sc-2278386 RANDOM 108832616;112424913 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066136/ERR1066136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066136/ERR1066136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066136/17175_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066136/17175_6#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066136/ERR1066136_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066136/ERR1066136_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066136/17175_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066136/17175_6#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 171942961;9259 ERS708137 ERX1146286 GENOMIC 14427520 714049750 2015-10-13 SC_RUN_17175_6#34 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066136/17175_6#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066136/17175_6#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#34 ERR1066036 SC_EXP_17175_5#24 463 bcb0c3fed446c43cf165f948dc55f4cb;82ab1efa9fbf9e03d6b2d896b13de4d0 1313 1e67cad57ea05fff08b76c0f54790c2f;f5cb98510aa85df84adf46ea4ffa6ee3 SAMEA3353584 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066036/ERR1066036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066036/ERR1066036_2.fastq.gz 7924106 WGS GPS_ZA_carriage_SP1635-sc-2278186 RANDOM 150451465;153330151 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066036/ERR1066036_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/006/ERR1066036/ERR1066036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066036/17175_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066036/17175_5#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066036/ERR1066036_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/006/ERR1066036/ERR1066036_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066036/17175_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066036/17175_5#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241951022;12886 ERS707939 ERX1146186 GENOMIC 14423393 990513250 2015-10-13 SC_RUN_17175_5#24 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066036/17175_5#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066036/17175_5#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_5#24 ERR1065980 SC_EXP_17175_4#61 467 8541c0b8c68c7cf5612532d2bb8329c6;8a36227850ead34f4fa9dccbfb248f2c 1313 629c7a46835cf5585220045d9b6754fc;7a524e11a44ea3fef2386b63f0155405 SAMEA3353466 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065980/ERR1065980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065980/ERR1065980_2.fastq.gz 4859878 WGS GPS_ZA_carriage_SP1486-sc-2278066 RANDOM 87489544;87731367 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065980/ERR1065980_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065980/ERR1065980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065980/17175_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065980/17175_4#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065980/ERR1065980_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065980/ERR1065980_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065980/17175_4#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065980/17175_4#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 135096745;8057 ERS707821 ERX1146130 GENOMIC 14436352 607484750 2015-10-13 SC_RUN_17175_4#61 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065980/17175_4#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065980/17175_4#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#61 ERR1065953 SC_EXP_17175_4#34 467 8d902c02d8a88a71b4a77bf7c5c3b7f4;2f36b72a4882c478a9f2c7dbacb127bb 1313 4e169fc598c296083c232e0837410693;4b045f68f98007c0a2dac9028180acda SAMEA3353416 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065953/ERR1065953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065953/ERR1065953_2.fastq.gz 4624424 WGS GPS_ZA_carriage_SP1459-sc-2278016 RANDOM 88546097;92559448 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065953/ERR1065953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065953/ERR1065953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065953/17175_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065953/17175_4#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065953/ERR1065953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065953/ERR1065953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065953/17175_4#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065953/17175_4#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 139257983;7593 ERS707771 ERX1146103 GENOMIC 14436313 578053000 2015-10-13 SC_RUN_17175_4#34 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065953/17175_4#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065953/17175_4#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#34 ERR1065847 SC_EXP_17150_6#21 464 ddbd7e696161f0f1f5a06778eb0df055;2c8170edb5ba98ade50e5691a7643a39 1313 e9dae4ef9446c612fe71dc44fd63a48a;269be0dc14246a13920b63a527712ece SAMEA3354117 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065847/ERR1065847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065847/ERR1065847_2.fastq.gz 4691670 WGS GPS_ZA_2995-sc-2278725 RANDOM 91401434;87770788 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065847/ERR1065847_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065847/ERR1065847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065847/17150_6#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065847/17150_6#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065847/ERR1065847_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065847/ERR1065847_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065847/17150_6#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065847/17150_6#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 137279944;7775 ERS708472 ERX1145997 GENOMIC 14438206 586458750 2015-10-13 SC_RUN_17150_6#21 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065847/17150_6#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065847/17150_6#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#21 ERR1065781 SC_EXP_17150_5#48 460 1e7deff91aee254daaecd542bd15118d;270c6edaa107a5c2c58df19c7f0056cd 1313 1e2af05aa523d9cbacc67dac6ac04ec9;9c32c1269371fc9be0ab818de72bede4 SAMEA3353811 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065781/ERR1065781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065781/ERR1065781_2.fastq.gz 4324450 WGS GPS_ZA_2792-sc-2278415 RANDOM 88789249;84115500 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065781/ERR1065781_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065781/ERR1065781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065781/17150_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065781/17150_5#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065781/ERR1065781_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065781/ERR1065781_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065781/17150_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065781/17150_5#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131950153;7141 ERS708166 ERX1145931 GENOMIC 14423285 540556250 2015-10-13 SC_RUN_17150_5#48 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065781/17150_5#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065781/17150_5#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#48 ERR1065860 SC_EXP_17150_6#34 464 1450eea235cf31c1f379bc3cd3457aee;7fa1ffb6b552c6fa13bf1f689d27010f 1313 01b0b3b661f4d43ae58d9213e91e5bb9;37a3179e80ca97029daa5ca864d2ae4b SAMEA3354141 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065860/ERR1065860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065860/ERR1065860_2.fastq.gz 4645398 WGS GPS_ZA_3004-sc-2278749 RANDOM 92706820;88625834 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065860/ERR1065860_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065860/ERR1065860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065860/17150_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065860/17150_6#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065860/ERR1065860_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065860/ERR1065860_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065860/17150_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065860/17150_6#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 136691692;7587 ERS708496 ERX1146010 GENOMIC 14438172 580674750 2015-10-13 SC_RUN_17150_6#34 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065860/17150_6#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065860/17150_6#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#34 ERR1065772 SC_EXP_17150_5#39 460 6a1334b4490cd9a013ee78a953b72550;9fc45b19eacfc7399bcfce120f88e080 1313 e5e7e32107a409076094770d28950411;493a7ee4f6efa7dc76628247b11e7dd4 SAMEA3353792 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065772/ERR1065772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065772/ERR1065772_2.fastq.gz 4491748 WGS GPS_ZA_carriage_SP1829-sc-2278396 RANDOM 89052885;83275539 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065772/ERR1065772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065772/ERR1065772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065772/17150_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065772/17150_5#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065772/ERR1065772_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065772/ERR1065772_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065772/17150_5#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065772/17150_5#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131307099;7418 ERS708147 ERX1145922 GENOMIC 14423272 561468500 2015-10-13 SC_RUN_17150_5#39 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065772/17150_5#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065772/17150_5#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#39 ERR1065341 SC_EXP_17059_8#45 447 4b97117379c65ce81987870d2422b749;670cdd228c6626a55da31f79022f39c1 1313 5285384c68ad3ae910740f7ef3c7a516;908e7fe983945b9b00fc965a8a8e77fe SAMEA3353441 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065341/ERR1065341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065341/ERR1065341_2.fastq.gz 5331528 WGS GPS_ZA_carriage_SP1373-sc-2278041 RANDOM 94454511;96857473 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065341/ERR1065341_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065341/ERR1065341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065341/17059_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065341/17059_8#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065341/ERR1065341_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065341/ERR1065341_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065341/17059_8#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065341/17059_8#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 157939775;8815 ERS707796 ERX1145491 GENOMIC 14406236 666441000 2015-10-13 SC_RUN_17059_8#45 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065341/17059_8#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065341/17059_8#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#45 ERR1065353 SC_EXP_17059_8#57 447 fc12776e04e924bfcdd7a9bcef4cea45;d00c28649501a647a5a0761ad83af54f 1313 7fd114e3f28db433319215694e141095;9872c7ccb49bfb8aa359d38ccc866aa2 SAMEA3353467 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065353/ERR1065353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065353/ERR1065353_2.fastq.gz 4663918 WGS GPS_ZA_carriage_SP1385-sc-2278067 RANDOM 82635547;84467677 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065353/ERR1065353_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/003/ERR1065353/ERR1065353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065353/17059_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065353/17059_8#57.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065353/ERR1065353_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/003/ERR1065353/ERR1065353_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065353/17059_8#57.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065353/17059_8#57.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 134342729;7632 ERS707822 ERX1145503 GENOMIC 14406190 582989750 2015-10-13 SC_RUN_17059_8#57 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065353/17059_8#57.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065353/17059_8#57.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#57 ERR1065232 SC_EXP_17059_7#28 465 b5a662791f0088ed2d86dcc2afc73e26;15afacbcbe4e97378c4239d2fa820872 1313 e36af92ae3a431a9405ce3aba59c77a4;61b8469d963ea1a9a8544dd50d313c43 SAMEA3353215 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065232/ERR1065232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065232/ERR1065232_2.fastq.gz 5085388 WGS GPS_ZA_carriage_SP1262-sc-2277813 RANDOM 92344033;94245158 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065232/ERR1065232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065232/ERR1065232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065232/17059_7#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065232/17059_7#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065232/ERR1065232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065232/ERR1065232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065232/17059_7#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065232/17059_7#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 155449953;8470 ERS707570 ERX1145382 GENOMIC 14406321 635673500 2015-10-13 SC_RUN_17059_7#28 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065232/17059_7#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065232/17059_7#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#28 ERR1065351 SC_EXP_17059_8#55 447 061c68b92aedae207c5fe869a6790f98;c7a9b844d1f71277051bdf80df46247d 1313 2d53aef60bdde4cac5809f7db5eeebe6;db3ba501bad5cd98a2ca131b2cbe80b8 SAMEA3353462 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065351/ERR1065351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065351/ERR1065351_2.fastq.gz 4817714 WGS GPS_ZA_carriage_SP1383-sc-2278062 RANDOM 84130833;85960565 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065351/ERR1065351_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065351/ERR1065351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065351/17059_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065351/17059_8#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065351/ERR1065351_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065351/ERR1065351_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065351/17059_8#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065351/17059_8#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 140042069;8025 ERS707817 ERX1145501 GENOMIC 14406261 602214250 2015-10-13 SC_RUN_17059_8#55 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065351/17059_8#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065351/17059_8#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#55 ERR1065215 SC_EXP_17059_7#10 465 7aae997f72cc4263c6ae35ea61f23c62;1dc733d77401e7615705532510c079d6 1313 df14bde9c335acc1decd7e6a4a18d87c;fc613b7d6be0291cba4d63ee31519c06 SAMEA3353178 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065215/ERR1065215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065215/ERR1065215_2.fastq.gz 4834966 WGS GPS_ZA_carriage_SP1244-sc-2277776 RANDOM 88642439;91667894 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065215/ERR1065215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065215/ERR1065215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065215/17059_7#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065215/17059_7#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065215/ERR1065215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065215/ERR1065215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065215/17059_7#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065215/17059_7#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 150094183;8113 ERS707533 ERX1145365 GENOMIC 14406295 604370750 2015-10-13 SC_RUN_17059_7#10 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065215/17059_7#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065215/17059_7#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#10 ERR984292 SC_EXP_16453_2#55 218 b581a2ff1988554053ab570cadc208a2;6428c95fa00f5b85315966f3c166e162 1313 5709a5303d48936f3e04219a5011cd1a;673be6b04e8707dca83d45850f124375 SAMEA3309809 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984292/ERR984292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984292/ERR984292_2.fastq.gz 6101816 WGS GPS_GM_1827-sc-2206624 RANDOM 105796074;109736997 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984292/ERR984292_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984292/ERR984292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984292/16453_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984292/16453_2#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984292/ERR984292_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984292/ERR984292_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984292/16453_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984292/16453_2#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 182362433;10086 ERS686271 ERX1065513 GENOMIC 13843330 762727000 2015-08-18 SC_RUN_16453_2#55 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984292/16453_2#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984292/16453_2#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#55 ERR984285 SC_EXP_16453_2#48 218 2fb4ec427131c72cb41760a51f426266;8749902c30a31e01f5b664a2447036a2 1313 86fa7f7b834a1b9fb9fb6f2b008541d5;616920dc3adb71b38e0a02a7663bd0a8 SAMEA3309802 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984285/ERR984285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984285/ERR984285_2.fastq.gz 6535446 WGS GPS_GM_1820-sc-2206617 RANDOM 114233807;118324732 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984285/ERR984285_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984285/ERR984285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984285/16453_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984285/16453_2#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984285/ERR984285_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984285/ERR984285_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984285/16453_2#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984285/16453_2#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 196239905;10708 ERS686264 ERX1065506 GENOMIC 13843341 816930750 2015-08-18 SC_RUN_16453_2#48 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984285/16453_2#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984285/16453_2#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#48 ERR1065127 SC_EXP_17059_6#16 444 b0147d0f7dd05d5c15736fedc3323c75;d9fa21cf15495e103ec192601900c83b 1313 24fc310c0ad4e8d3deab2327b12b8486;b2fdf83a412d7fbe7d1cef9ec3251af8 SAMEA3353193 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065127/ERR1065127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065127/ERR1065127_2.fastq.gz 6187000 WGS GPS_ZA_carriage_SP1156-sc-2277791 RANDOM 115241539;114522732 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065127/ERR1065127_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065127/ERR1065127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065127/17059_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065127/17059_6#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065127/ERR1065127_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065127/ERR1065127_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065127/17059_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065127/17059_6#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 188316315;10120 ERS707548 ERX1145277 GENOMIC 14397978 773375000 2015-10-13 SC_RUN_17059_6#16 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065127/17059_6#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065127/17059_6#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_6#16 ERR1065210 SC_EXP_17059_7#5 465 25484e68dd23987bec146ec29d40162d;1bae55a588b0d9b072a61ad89b995a99 1313 992475262f284a4e144572f34e72e1fd;ae72de31b8997f9a72199dfc4c707d92 SAMEA3353169 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065210/ERR1065210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065210/ERR1065210_2.fastq.gz 5417704 WGS GPS_ZA_carriage_SP1239-sc-2277767 RANDOM 97086490;101886661 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065210/ERR1065210_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065210/ERR1065210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065210/17059_7#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065210/17059_7#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065210/ERR1065210_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065210/ERR1065210_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065210/17059_7#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065210/17059_7#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 163858951;8949 ERS707524 ERX1145360 GENOMIC 14406330 677213000 2015-10-13 SC_RUN_17059_7#5 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065210/17059_7#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065210/17059_7#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#5 ERR980247 SC_EXP_16288_7#55 201 fdf52812f9a1ec42ef63bdb5a290401e;d2d5a9a868b148146c1a8b4bf7fb9026 1313 ae3c4b9e047e572992c94d039433fa02;dc865261219b30d730877d5a8138b3bc SAMEA3232730 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980247/ERR980247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980247/ERR980247_2.fastq.gz 5030042 WGS GPS_NP_1179-sc-2205650 RANDOM 170510661;166321101 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980247/ERR980247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980247/ERR980247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980247/16288_7#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980247/16288_7#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980247/ERR980247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980247/ERR980247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980247/16288_7#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980247/16288_7#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272397120;8003 ERS653941 ERX1057119 GENOMIC 13304081 503004200 2015-08-12 SC_RUN_16288_7#55 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980247/16288_7#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980247/16288_7#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#55 ERR925366 SC_EXP_15995_2#156 219 5686f5367c11b5dc0ed4e5c90a55c24c;98d06a23195dc72db57ae41a1ccb86f7 1313 928549d132d92da4803cf2bdab19a08d;832c43b8b321553986dbbcec38cdc1d9 SAMEA3209086 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925366/ERR925366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925366/ERR925366_2.fastq.gz 1734244 WGS GPS_ZA_carriage_SP1089-sc-2205224 RANDOM 54711603;56845460 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925366/ERR925366_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925366/ERR925366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925366/15995_2#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925366/15995_2#156.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925366/ERR925366_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925366/ERR925366_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925366/15995_2#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925366/15995_2#156.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90964109;2908 ERS640188 ERX1004641 GENOMIC 13301254 173424400 2015-06-23 SC_RUN_15995_2#156 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925366/15995_2#156.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925366/15995_2#156.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#156 ERR909075 SC_EXP_15841_3#36 225 2eeff570edc16e8010a8b2b75034d4d7;424b6f0559a55e038fc379e3abb0260c 1313 abd2f35d5f7be8fc39ed9fc5f89679f7;eb8d21526acc50c91a5010491d668afe SAMEA3208682 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909075/ERR909075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909075/ERR909075_2.fastq.gz 4502884 WGS GPS_ZA_carriage_SP706-sc-2204816 RANDOM 138283541;143792662 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909075/ERR909075_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909075/ERR909075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909075/15841_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909075/15841_3#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909075/ERR909075_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909075/ERR909075_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909075/15841_3#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909075/15841_3#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226506183;7230 ERS639784 ERX988330 GENOMIC 13267828 450288400 2015-06-09 SC_RUN_15841_3#36 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909075/15841_3#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909075/15841_3#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#36 ERR913520 SC_EXP_15874_1#41 217 d4d8b9cbef8057ede54723b3557e000c;5891cbb1aa79cc4f441ebb0ca0d091c1 1313 9497033370ee91b1c7ba30871adbfb37;4ea8a2a96a597ccb7fb8d12f412672ae SAMEA3207046 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913520/ERR913520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913520/ERR913520_2.fastq.gz 5151476 WGS GPS_ZA_carriage_SP386-sc-2191983 RANDOM 152962738;161110674 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913520/ERR913520_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913520/ERR913520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913520/15874_1#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913520/15874_1#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913520/ERR913520_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913520/ERR913520_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913520/15874_1#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913520/15874_1#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251496196;8189 ERS639056 ERX992644 GENOMIC 13242054 515147600 2015-06-17 SC_RUN_15874_1#41 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913520/15874_1#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913520/15874_1#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#41 ERR925258 SC_EXP_15995_2#47 219 c85cc11a07b6fd3a5b32ab2628280508;95ec8eadb4b40f291b3185d3c79f11d5 1313 0c47def5fbb6082cfacf678057b75551;9cdcb5f531700a0261442b86bd2fa558 SAMEA3208978 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925258/ERR925258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925258/ERR925258_2.fastq.gz 2039204 WGS GPS_ZA_carriage_SP1028-sc-2205115 RANDOM 63263431;65576346 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925258/ERR925258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925258/ERR925258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925258/15995_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925258/15995_2#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925258/ERR925258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925258/ERR925258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925258/15995_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925258/15995_2#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105108641;3446 ERS640080 ERX1004533 GENOMIC 13301191 203920400 2015-06-23 SC_RUN_15995_2#47 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925258/15995_2#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925258/15995_2#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#47 ERR908852 SC_EXP_15841_1#3 206 3601be32257f80e785f1247071e03f9b;4fb5febc90b3fcead78d3aed9c8fb060 1313 3e8ff77e46d18a331cb1478c73fbc342;3a3b7758617cf4155b4b88f462fe219e SAMEA3206757 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908852/ERR908852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908852/ERR908852_2.fastq.gz 5852022 WGS GPS_ZA_carriage_SP215-sc-2191691 RANDOM 182827653;189419713 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908852/ERR908852_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908852/ERR908852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908852/15841_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908852/15841_1#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908852/ERR908852_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908852/ERR908852_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908852/15841_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908852/15841_1#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301065989;9421 ERS638767 ERX988107 GENOMIC 13227461 585202200 2015-06-09 SC_RUN_15841_1#3 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908852/15841_1#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908852/15841_1#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#3 ERR909318 SC_EXP_15841_5#89 223 4e4007fce9e5f1d845a68dc9decd2bfd;6f15971cf976b98fff8d9ad1a4a47380 1313 e774cbf12464581e38850ebf85a12433;d11c4410104637bcef98ce0e7ff5d69d SAMEA3206999 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909318/ERR909318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909318/ERR909318_2.fastq.gz 5007468 WGS GPS_ZA_carriage_SP297-sc-2191935 RANDOM 158933350;164789921 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909318/ERR909318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909318/ERR909318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909318/15841_5#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909318/15841_5#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909318/ERR909318_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909318/ERR909318_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909318/15841_5#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909318/15841_5#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262732983;8022 ERS639009 ERX988573 GENOMIC 13275934 500746800 2015-06-09 SC_RUN_15841_5#89 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909318/15841_5#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909318/15841_5#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#89 ERR908981 SC_EXP_15841_2#37 229 9d13df0d2aac0400c90ef2a72fa757ac;5bd6ca567e367e63bb1e60d131b65791 1313 e6e9ba91bd4bd717576179d20a90d36f;c8a5da48ea7cde8b3c75b49b5662ed82 SAMEA3207232 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908981/ERR908981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908981/ERR908981_2.fastq.gz 5141036 WGS GPS_ZA_carriage_SP623-sc-2192171 RANDOM 165334832;171269462 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908981/ERR908981_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908981/ERR908981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908981/15841_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908981/15841_2#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908981/ERR908981_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908981/ERR908981_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908981/15841_2#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908981/15841_2#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 271784749;8281 ERS639242 ERX988236 GENOMIC 13265132 514103600 2015-06-09 SC_RUN_15841_2#37 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908981/15841_2#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908981/15841_2#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_2#37 ERR900721 SC_EXP_15731_8#76 230 8a660c087918aa2677e5b3dd17c5f298;2d7fd988f126fdcb69dbcf30130d2336 1313 1bdd3f0c9c658bca045b6e59214c2c20;d55404d70922c98c56eadd66ae30ce5b SAMEA3206701 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900721/ERR900721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900721/ERR900721_2.fastq.gz 4996410 WGS GPS_ZA_carriage_SP46-sc-2191634 RANDOM 153487432;160194837 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900721/ERR900721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900721/ERR900721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900721/15731_8#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900721/15731_8#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900721/ERR900721_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900721/ERR900721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900721/15731_8#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900721/15731_8#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 252444268;7934 ERS638711 ERX980110 GENOMIC 13208919 499641000 2015-05-26 SC_RUN_15731_8#76 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900721/15731_8#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900721/15731_8#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#76 ERR900736 SC_EXP_15731_8#91 230 eea4bc966cfe834a40693d5d3fbab6db;c1614a0d47bf9faa4fab8aa096012847 1313 4012c2fcc7b38a9707dd2d6924a2823b;711bd7bb1834317c61de3e2f9b812137 SAMEA3206716 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900736/ERR900736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900736/ERR900736_2.fastq.gz 4890864 WGS GPS_ZA_carriage_SP36-sc-2191649 RANDOM 150995665;156960039 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900736/ERR900736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900736/ERR900736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900736/15731_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900736/15731_8#91.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900736/ERR900736_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900736/ERR900736_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900736/15731_8#91.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900736/15731_8#91.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247673848;7759 ERS638726 ERX980125 GENOMIC 13208909 489086400 2015-05-26 SC_RUN_15731_8#91 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900736/15731_8#91.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900736/15731_8#91.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#91 ERR870004 SC_EXP_15531_4#2 207 41e123c26dd69d41167900e96e288e0f;a7e7668cede04f7a3a7832a3713402fe 1313 b33398b532b28003b9377bd083f0c747;c023814c7d31a6950f31529523363bb3 SAMEA3171601 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870004/ERR870004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870004/ERR870004_2.fastq.gz 4945518 WGS GPS_MW_154459-sc-2139995 RANDOM 188758665;178935119 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870004/ERR870004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870004/ERR870004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870004/15531_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870004/15531_4#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870004/ERR870004_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870004/ERR870004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870004/15531_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870004/15531_4#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307640179;8087 ERS625992 ERX949605 GENOMIC 12882793 494551800 2015-05-06 SC_RUN_15531_4#2 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870004/15531_4#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870004/15531_4#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#2 ERR870011 SC_EXP_15531_4#9 207 9d119c8282a86a8911f1626a64e2506e;991b466c1d3480a135ed326b704f302d 1313 3ac9832e7c7809e4b28dbb93c16a0435;f701b17c6821972d9dd3dd27bb259aa3 SAMEA3171608 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870011/ERR870011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870011/ERR870011_2.fastq.gz 4079258 WGS GPS_MW_154455-sc-2140002 RANDOM 156248891;148386409 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870011/ERR870011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870011/ERR870011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870011/15531_4#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870011/15531_4#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870011/ERR870011_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870011/ERR870011_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870011/15531_4#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870011/15531_4#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 252989016;6666 ERS625999 ERX949612 GENOMIC 12882782 407925800 2015-05-06 SC_RUN_15531_4#9 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870011/15531_4#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870011/15531_4#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#9 ERR870010 SC_EXP_15531_4#8 207 09b8a0ca234f2e30429f542fb2ba9f8c;22b1dca80fe091bb6486d791d4d0a954 1313 7e0cb5144462c2dad7cd8b06db3a6e45;3f69fe0efddf0f92da8dd5245ac2695c SAMEA3171607 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870010/ERR870010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870010/ERR870010_2.fastq.gz 5005464 WGS GPS_MW_153988-sc-2140001 RANDOM 190865139;180870770 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870010/ERR870010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870010/ERR870010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870010/15531_4#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870010/15531_4#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870010/ERR870010_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870010/ERR870010_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870010/15531_4#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870010/15531_4#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 310738251;8171 ERS625998 ERX949611 GENOMIC 12882865 500546400 2015-05-06 SC_RUN_15531_4#8 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870010/15531_4#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870010/15531_4#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#8 ERR870008 SC_EXP_15531_4#6 207 d2481c466ea0978329947283d7e76e31;121b36e4b27f4e98edb78c744f59b8c4 1313 a46a5a6a4995024c71fd9ddad2fb5aa7;1ebbd2758fd3b5239c2c54b9531ed2d3 SAMEA3171605 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870008/ERR870008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870008/ERR870008_2.fastq.gz 4952648 WGS GPS_MW_153621-sc-2139999 RANDOM 188939291;179422306 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870008/ERR870008_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870008/ERR870008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870008/15531_4#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870008/15531_4#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870008/ERR870008_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870008/ERR870008_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870008/15531_4#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870008/15531_4#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307627048;8073 ERS625996 ERX949609 GENOMIC 12882841 495264800 2015-05-06 SC_RUN_15531_4#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870008/15531_4#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870008/15531_4#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#6 ERR862352 SC_EXP_15378_2#94 205 8412eb7839c6abcb8ef201758c4b511d;a2d8988585e23b016b4f99838629738d 1313 6b83316bd1a1f46301f538ffca9c6b8d;9d343b4743c72af6d5a92538a5db35a7 SAMEA3171034 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862352/ERR862352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862352/ERR862352_2.fastq.gz 3975948 WGS GPS_MW_1396-sc-2139596 RANDOM 113377126;117190306 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862352/ERR862352_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862352/ERR862352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862352/15378_2#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862352/15378_2#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862352/ERR862352_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862352/ERR862352_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862352/15378_2#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862352/15378_2#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 184014055;6521 ERS625425 ERX942002 GENOMIC 12810505 397594800 2015-04-21 SC_RUN_15378_2#94 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862352/15378_2#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862352/15378_2#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#94 ERR862447 SC_EXP_15378_3#94 191 4c34a87f41f8ddc66d0fe07153de71a6;cd83623f3ac3aa2b8d18b5de183ac6bf 1313 44d41e6bd87485ed6d5654343dc5892f;16b4a26c57a6307da01d4fae9c438e68 SAMEA3171131 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862447/ERR862447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862447/ERR862447_2.fastq.gz 3812322 WGS GPS_MW_4375-sc-2139694 RANDOM 130637914;134609697 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862447/ERR862447_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862447/ERR862447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862447/15378_3#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862447/15378_3#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862447/ERR862447_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862447/ERR862447_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862447/15378_3#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862447/15378_3#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 217782301;6231 ERS625522 ERX942097 GENOMIC 12815457 381232200 2015-04-21 SC_RUN_15378_3#94 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862447/15378_3#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862447/15378_3#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#94 ERR925211 SC_EXP_15995_1#191 231 03d8e17c517cdaa42534f51f79d1b8f0;64f7e437a609b62391f0f422cbc293ab 1313 e78e6b474c2b52c7fd6f7983defa5c72;72e99d54c87d7e7e3c690f615f9a7ac8 SAMEA3208931 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925211/ERR925211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925211/ERR925211_2.fastq.gz 1504114 WGS GPS_ZA_carriage_SP939-sc-2205067 RANDOM 45523391;47543528 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925211/ERR925211_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925211/ERR925211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925211/15995_1#191.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925211/15995_1#191.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925211/ERR925211_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925211/ERR925211_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925211/15995_1#191.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925211/15995_1#191.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 75174198;2589 ERS640033 ERX1004486 GENOMIC 13241148 150411400 2015-06-23 SC_RUN_15995_1#191 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925211/15995_1#191.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925211/15995_1#191.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#191 ERR925162 SC_EXP_15995_1#138 231 8e37f5d8ba087d373aa10ff4104eb873;df25f3d9801472f30dc9de2889674cf7 1313 698d1606b1bf603ac0f882c75504bd73;90e28727c51b7777d6af447719468043 SAMEA3208878 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925162/ERR925162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925162/ERR925162_2.fastq.gz 1854662 WGS GPS_ZA_carriage_SP873-sc-2205014 RANDOM 55944611;58732260 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925162/ERR925162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925162/ERR925162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925162/15995_1#138.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925162/15995_1#138.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925162/ERR925162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925162/ERR925162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925162/15995_1#138.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925162/15995_1#138.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93182922;3188 ERS639980 ERX1004437 GENOMIC 13241082 185466200 2015-06-23 SC_RUN_15995_1#138 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925162/15995_1#138.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925162/15995_1#138.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#138 ERR925155 SC_EXP_15995_1#131 231 1472aeb0a0a1c276a0521580e246774c;d592bf1f1e4d665ea794640515c4c556 1313 be38229d023d171487a46abe22464368;21c3a3a5f4cd2913b795b996cbb75637 SAMEA3208871 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925155/ERR925155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925155/ERR925155_2.fastq.gz 2111084 WGS GPS_ZA_carriage_SP884-sc-2205007 RANDOM 63370426;65806105 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925155/ERR925155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925155/ERR925155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925155/15995_1#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925155/15995_1#131.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925155/ERR925155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925155/ERR925155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925155/15995_1#131.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925155/15995_1#131.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105468759;3577 ERS639973 ERX1004430 GENOMIC 13241093 211108400 2015-06-23 SC_RUN_15995_1#131 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925155/15995_1#131.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925155/15995_1#131.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#131 ERR925089 SC_EXP_15995_1#63 231 d214a0ceca33b48248a1472c423f8f6b;11f78fee55908bc743b2bb6f00bc8ce6 1313 77288d2888c4451141bf01395f1578be;ea52be35f3e9d37813bd484a71364576 SAMEA3206852 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925089/ERR925089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925089/ERR925089_2.fastq.gz 1327980 WGS GPS_ZA_carriage_SP175-sc-2191786 RANDOM 40797515;42354302 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925089/ERR925089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925089/ERR925089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925089/15995_1#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925089/15995_1#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925089/ERR925089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925089/ERR925089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925089/15995_1#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925089/15995_1#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66936252;2269 ERS638862 ERX1004364 GENOMIC 13241047 132798000 2015-06-23 SC_RUN_15995_1#63 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925089/15995_1#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925089/15995_1#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#63 ERR913097 SC_EXP_15873_1#40 206 78b446718ce6a4fe3deda37230919947;efb2f27382b8662b8a5f1096f192e857 1313 c549f151b61f94a1d0d158766532784c;c5742be8acbd245011ea0c73d8c12844 SAMEA3207140 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913097/ERR913097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913097/ERR913097_2.fastq.gz 4819978 WGS GPS_ZA_carriage_SP564-sc-2192078 RANDOM 152388208;159314516 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913097/ERR913097_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913097/ERR913097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913097/15873_1#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913097/15873_1#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913097/ERR913097_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913097/ERR913097_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913097/15873_1#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913097/15873_1#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253072503;7733 ERS639150 ERX992221 GENOMIC 13227622 481997800 2015-06-17 SC_RUN_15873_1#40 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913097/15873_1#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913097/15873_1#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#40 ERR913132 SC_EXP_15873_1#75 206 891d932529764d08c88dd13161e88fe6;ba17c143de3ff388019631aa4a342693 1313 ab59e3a7a00dba6b7dbdca1111b27ae4;bca90d90783770328536716610d3455f SAMEA3207175 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913132/ERR913132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913132/ERR913132_2.fastq.gz 4715740 WGS GPS_ZA_carriage_SP509-sc-2192113 RANDOM 149562950;156500116 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913132/ERR913132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913132/ERR913132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913132/15873_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913132/15873_1#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913132/ERR913132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913132/ERR913132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913132/15873_1#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913132/15873_1#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248277714;7452 ERS639185 ERX992256 GENOMIC 13227567 471574000 2015-06-17 SC_RUN_15873_1#75 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913132/15873_1#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913132/15873_1#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#75 ERR909102 SC_EXP_15841_3#63 225 7ff8b50d11c44dbcb5e017acb417c9bf;d0f901565f443692f1f0137cc8cc0f3c 1313 6f4be7b2bef9660dc2a510e8d0d959c4;1ddba49ea6386121babdf5e2f716216c SAMEA3208709 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909102/ERR909102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909102/ERR909102_2.fastq.gz 4527580 WGS GPS_ZA_carriage_SP745-sc-2204843 RANDOM 138138830;143159554 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909102/ERR909102_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909102/ERR909102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909102/15841_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909102/15841_3#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909102/ERR909102_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909102/ERR909102_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909102/15841_3#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909102/15841_3#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 228089250;7275 ERS639811 ERX988357 GENOMIC 13267867 452758000 2015-06-09 SC_RUN_15841_3#63 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909102/15841_3#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909102/15841_3#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#63 ERR909067 SC_EXP_15841_3#28 225 9cd7d127c2282b8320ce16f5fb56600e;9f2d7c427dd64f7c6b9045e364301f61 1313 70df2608ff388ef7f3548683ca7a52af;7f0aeb209d001105a01e9d2bd4467557 SAMEA3208674 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909067/ERR909067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909067/ERR909067_2.fastq.gz 4359576 WGS GPS_ZA_carriage_SP705-sc-2204808 RANDOM 133109535;138307685 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909067/ERR909067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909067/ERR909067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909067/15841_3#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909067/15841_3#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909067/ERR909067_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909067/ERR909067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909067/15841_3#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909067/15841_3#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 217418479;6971 ERS639776 ERX988322 GENOMIC 13267827 435957600 2015-06-09 SC_RUN_15841_3#28 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909067/15841_3#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909067/15841_3#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#28 ERR909100 SC_EXP_15841_3#61 225 f628c723f423dbc7415a85b93d443a55;f96f4f59124c8e6cea13df61c65a3fe6 1313 a812f99cab46c0bbf8276c1da17038d2;0447b27e7bfa3ee5ece8c17eb33fa117 SAMEA3208707 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909100/ERR909100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909100/ERR909100_2.fastq.gz 4550436 WGS GPS_ZA_carriage_SP721-sc-2204841 RANDOM 138922765;143952267 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909100/ERR909100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909100/ERR909100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909100/15841_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909100/15841_3#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909100/ERR909100_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909100/ERR909100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909100/15841_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909100/15841_3#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 227842620;7289 ERS639809 ERX988355 GENOMIC 13267843 455043600 2015-06-09 SC_RUN_15841_3#61 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909100/15841_3#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909100/15841_3#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_3#61 ERR909228 SC_EXP_15841_4#94 228 fab4226b3f24b54cfade0cd3b4b7cb40;309e098a1fb277ceedde0853fb1272c8 1313 3afe7068079e70c876fac481f8de6990;99d664c65c3b1bfcae54607454ef3a4d SAMEA3208835 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909228/ERR909228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909228/ERR909228_2.fastq.gz 6049110 WGS GPS_ZA_carriage_SP832-sc-2204970 RANDOM 188743706;195775388 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909228/ERR909228_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909228/ERR909228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909228/15841_4#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909228/15841_4#94.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909228/ERR909228_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909228/ERR909228_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909228/15841_4#94.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909228/15841_4#94.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313811650;9826 ERS639937 ERX988483 GENOMIC 13267976 604911000 2015-06-09 SC_RUN_15841_4#94 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909228/15841_4#94.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909228/15841_4#94.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#94 ERR908857 SC_EXP_15841_1#8 206 1878022d83c4140052ba601251e2e747;bcc0ca7408e1cae2be854911d22f0fbf 1313 889ff92054526409b3a81694df50cc12;5c88b55e1708e6ab95f51f2b9ed8e852 SAMEA3206765 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908857/ERR908857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908857/ERR908857_2.fastq.gz 6865384 WGS GPS_ZA_carriage_SP275-sc-2191699 RANDOM 215042584;222723375 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908857/ERR908857_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908857/ERR908857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908857/15841_1#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908857/15841_1#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908857/ERR908857_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908857/ERR908857_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908857/15841_1#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908857/15841_1#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 355083865;11008 ERS638775 ERX988112 GENOMIC 13227521 686538400 2015-06-09 SC_RUN_15841_1#8 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908857/15841_1#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908857/15841_1#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#8 ERR909300 SC_EXP_15841_5#71 223 dca2eb588aba4e601b56c8f261543cf3;4438e17be4ac35884f9fa0be9e6f2328 1313 ee857fd06ad0dbfec0bc7a99bcc4b36f;4db5706c0be8433af2f18a3027629e11 SAMEA3206981 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909300/ERR909300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909300/ERR909300_2.fastq.gz 5075720 WGS GPS_ZA_carriage_SP366-sc-2191917 RANDOM 162109462;167503634 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909300/ERR909300_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909300/ERR909300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909300/15841_5#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909300/15841_5#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909300/ERR909300_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909300/ERR909300_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909300/15841_5#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909300/15841_5#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 266740144;8071 ERS638991 ERX988555 GENOMIC 13276003 507572000 2015-06-09 SC_RUN_15841_5#71 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909300/15841_5#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909300/15841_5#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_5#71 ERR774120 SC_EXP_14913_5#23 225 949ff169a61acdf9b0f7defd1f4c29cc;be076b9a5db80ce2b2e4d4cf2c31c692 1313 72507f7d768ce3f5ebb6d3e46460f927;b062f0eb9ac2153844bd5c487a11f0a2 SAMEA2814423 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774120/ERR774120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774120/ERR774120_2.fastq.gz 5085398 WGS GPS_ZA_2635-sc-2138218 RANDOM 169369046;177018748 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774120/ERR774120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774120/ERR774120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774120/14913_5#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774120/14913_5#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774120/ERR774120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774120/ERR774120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774120/14913_5#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774120/14913_5#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 282414794;8087 ERS566791 ERX716999 GENOMIC 12403441 508539800 2015-03-03 SC_RUN_14913_5#23 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774120/14913_5#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774120/14913_5#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_5#23 ERR900729 SC_EXP_15731_8#84 230 beddc8a3ed7b99c25deba21ad144793e;cbb84e708ff007c2f134a618c937772e 1313 9ac945e3664c0d88ac5793b81851de5b;838c89390189e932f1a45b231498fa0b SAMEA3206709 2015-05-26 ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900729/ERR900729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900729/ERR900729_2.fastq.gz 4692350 WGS GPS_ZA_carriage_SP47-sc-2191642 RANDOM 144425104;150669620 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900729/ERR900729_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR900/ERR900729/ERR900729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900729/15731_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900729/15731_8#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900729/ERR900729_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR900/ERR900729/ERR900729_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900729/15731_8#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR900/ERR900729/15731_8#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238425758;7465 ERS638719 ERX980118 GENOMIC 13208920 469235000 2015-05-26 SC_RUN_15731_8#84 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900729/15731_8#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR900/ERR900729/15731_8#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA441504 15731_8#84 ERR774047 SC_EXP_14913_4#45 230 39e9cda3bf6761355d91666118cb006f;8285606a08293491bd6899bde9688cff 1313 de6d0bfb2a1b97af31990e310ece21e3;bf6d5e34934d5a6cfb4bb5af90d853da SAMEA2814118 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774047/ERR774047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774047/ERR774047_2.fastq.gz 4648550 WGS GPS_ZA_2372-sc-2022602 RANDOM 156585133;164089892 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774047/ERR774047_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774047/ERR774047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774047/14913_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774047/14913_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774047/ERR774047_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774047/ERR774047_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774047/14913_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774047/14913_4#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 262870611;7349 ERS566486 ERX716926 GENOMIC 12396034 464855000 2015-03-03 SC_RUN_14913_4#45 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774047/14913_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774047/14913_4#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#45 ERR774041 SC_EXP_14913_4#39 230 2f6869c06b7c33b7417719ac858ee9aa;0efddf021ddcd738b307c5fe6572119c 1313 0a33e2ab73fa302a4ab1fd0173df3d96;6ea0dafc8c04463895d6969ad19a0bfc SAMEA2814099 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774041/ERR774041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774041/ERR774041_2.fastq.gz 5009046 WGS GPS_ZA_2366-sc-2022583 RANDOM 167334409;175488280 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774041/ERR774041_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774041/ERR774041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774041/14913_4#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774041/14913_4#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774041/ERR774041_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774041/ERR774041_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774041/14913_4#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774041/14913_4#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280802121;8009 ERS566467 ERX716920 GENOMIC 12396057 500904600 2015-03-03 SC_RUN_14913_4#39 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774041/14913_4#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774041/14913_4#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#39 ERR774034 SC_EXP_14913_4#32 230 79c4c4b48c9ef7802464fbaa21ab2175;0f87bae2e9fac9a89995cc01119f3d2e 1313 af5dcab9b6044820ed70b13d84ba5771;1b609b2f93b8be4f1cd110fdec86a983 SAMEA2814077 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774034/ERR774034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774034/ERR774034_2.fastq.gz 5312804 WGS GPS_ZA_2359-sc-2022561 RANDOM 177778660;185933979 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774034/ERR774034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774034/ERR774034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774034/14913_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774034/14913_4#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774034/ERR774034_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774034/ERR774034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774034/14913_4#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774034/14913_4#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 297605072;8499 ERS566445 ERX716913 GENOMIC 12396068 531280400 2015-03-03 SC_RUN_14913_4#32 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774034/14913_4#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774034/14913_4#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#32 ERR774027 SC_EXP_14913_4#25 230 6f64c19b3ab93f682d55ad22c4aa1e67;19049ea24091dcbd54031fe7722455ac 1313 a34bb666f76ffba9b94e594b9771dc16;54c0a711289b3d0a8a24ab403f786951 SAMEA2814054 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774027/ERR774027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774027/ERR774027_2.fastq.gz 5235658 WGS GPS_ZA_2352-sc-2022538 RANDOM 174014534;182097951 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774027/ERR774027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774027/ERR774027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774027/14913_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774027/14913_4#25.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774027/ERR774027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774027/ERR774027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774027/14913_4#25.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774027/14913_4#25.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291385583;8433 ERS566422 ERX716906 GENOMIC 12395984 523565800 2015-03-03 SC_RUN_14913_4#25 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774027/14913_4#25.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774027/14913_4#25.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#25 ERR774019 SC_EXP_14913_4#17 230 94b0c7794212ac901d03f36dbeb8e723;a38dec31099c92be399fd57b3820e33c 1313 cd14130ffc215982ae3973717b827f27;88be4da372827fe08cd0b840c1112c4b SAMEA2814027 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774019/ERR774019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774019/ERR774019_2.fastq.gz 5316368 WGS GPS_ZA_2344-sc-2022511 RANDOM 178484686;184144703 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774019/ERR774019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774019/ERR774019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774019/14913_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774019/14913_4#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774019/ERR774019_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774019/ERR774019_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774019/14913_4#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774019/14913_4#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 296189373;8422 ERS566395 ERX716898 GENOMIC 12395983 531636800 2015-03-03 SC_RUN_14913_4#17 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774019/14913_4#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774019/14913_4#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#17 ERR750985 SC_EXP_14723_3#79 222 e0394d6d964db4831dc39db1180599cf;7df7b692388172dfed461f4997673e0c 1313 8998756bdd2f019f6b9325a09bba7293;8aa5e3398f20f4240aec39e48bbae54b SAMEA2797247 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750985/ERR750985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750985/ERR750985_2.fastq.gz 5638478 WGS GPS_US_PATH5424-sc-2139276 RANDOM 205714258;209840108 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750985/ERR750985_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR750/ERR750985/ERR750985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750985/14723_3#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750985/14723_3#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750985/ERR750985_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR750/ERR750985/ERR750985_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750985/14723_3#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR750/ERR750985/14723_3#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 345039426;9206 ERS558858 ERX694667 GENOMIC 12133766 563847800 2015-02-03 SC_RUN_14723_3#79 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750985/14723_3#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR750/ERR750985/14723_3#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_3#79 ERR730652 SC_EXP_14555_4#82 208 b5011916475a204f1229e970b33db85c;1f7e0f8133386d6481e181ff35b210c8 1313 f50f817894c7922633849b521ea14389;a8d39ec3caf13a84ad7e4c5fc7867ae3 SAMEA2659081 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730652/ERR730652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730652/ERR730652_2.fastq.gz 4318670 WGS GPS_ZA_2124-sc-2021718 RANDOM 133234245;138914033 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730652/ERR730652_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730652/ERR730652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730652/14555_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730652/14555_4#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730652/ERR730652_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730652/ERR730652_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730652/14555_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730652/14555_4#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 224484498;7145 ERS509109 ERX674598 GENOMIC 11814922 431867000 2015-01-14 SC_RUN_14555_4#82 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730652/14555_4#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730652/14555_4#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#82 ERR730896 SC_EXP_14566_6#41 237 058c1d8f1d3e253f7e282e1c09122aae;67a91d8fb9925b800fb53cd7c6a63702 1313 85b20a33b60926eb5e4ed38e3764f336;6ff373199ccd95083c2ca9175320af71 SAMEA2658980 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730896/ERR730896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730896/ERR730896_2.fastq.gz 5287348 WGS GPS_ZA_1988-sc-2021618 RANDOM 158552222;163610265 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730896/ERR730896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730896/ERR730896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730896/14566_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730896/14566_6#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730896/ERR730896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730896/ERR730896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730896/14566_6#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730896/14566_6#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263153140;8602 ERS509008 ERX674842 GENOMIC 11887105 528734800 2015-01-14 SC_RUN_14566_6#41 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730896/14566_6#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730896/14566_6#41.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#41 ERR730879 SC_EXP_14566_6#24 237 f7242f0a3da1872a11766c814c8f701f;e459cd8487464f8591a33ad1018fe248 1313 b03a3d641981199b2a44b9453af21568;546fcb9ae27229d3f04e0fb2a704354f SAMEA2658947 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730879/ERR730879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730879/ERR730879_2.fastq.gz 5707468 WGS GPS_ZA_1971-sc-2021585 RANDOM 172120793;178221008 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730879/ERR730879_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730879/ERR730879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730879/14566_6#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730879/14566_6#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730879/ERR730879_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730879/ERR730879_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730879/14566_6#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730879/14566_6#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286531872;9223 ERS508975 ERX674825 GENOMIC 11887186 570746800 2015-01-14 SC_RUN_14566_6#24 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730879/14566_6#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730879/14566_6#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#24 ERR714356 SC_EXP_14410_6#84 230 7185d0246afee90b89fb61232b487f12;2c47d4a7ec7deeac304246fb688ff2a7 1313 286b406177151283905d0ea2d468cf70;0938ca250cf6f9df38cb8046ecaa7ce7 SAMEA2627263 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714356/ERR714356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714356/ERR714356_2.fastq.gz 5701312 WGS GPS_GM_0432-sc-2003193 RANDOM 201817794;202829719 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714356/ERR714356_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714356/ERR714356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714356/14410_6#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714356/14410_6#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714356/ERR714356_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714356/ERR714356_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714356/14410_6#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714356/14410_6#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 333355788;9170 ERS497162 ERX658278 GENOMIC 11883300 570131200 2015-01-08 SC_RUN_14410_6#84 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714356/14410_6#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714356/14410_6#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_6#84 ERR600188 SC_EXP_13414_2#55 233 1bb2b2416010f8a9912f31390d6df5bb;95e0e6d00f91d1403de24ca2599b07c2 1313 46c8389a677c3cc17e55387251a2c1a2;93c8d85c0c6e3f77ae03d1a982f8ad0c SAMEA2521606 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600188/ERR600188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600188/ERR600188_2.fastq.gz 5372908 WGS 2012221324-sc-1946898 RANDOM 182740432;186585087 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600188/ERR600188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600188/ERR600188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600188/13414_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600188/13414_2#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600188/ERR600188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600188/ERR600188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600188/13414_2#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600188/13414_2#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 304124570;8707 ERS455146 ERX557017 GENOMIC 10600572 537290800 2014-09-16 SC_RUN_13414_2#55 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600188/13414_2#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600188/13414_2#55.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#55 ERR632964 SC_EXP_13415_7#5 225 4414b7fe4ce957fdcde8377cb46ca231;3f24a899e220b521cfa0ead234a0e7ae 1313 aca3a38574885a596b361a08c052d45e;2af1c784b60068eb2a91580f6c08057d SAMEA2554116 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632964/ERR632964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632964/ERR632964_2.fastq.gz 5134016 WGS GPS_ZA_1005-sc-1951153 RANDOM 172567096;178266596 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632964/ERR632964_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632964/ERR632964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632964/13415_7#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632964/13415_7#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632964/ERR632964_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632964/ERR632964_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632964/13415_7#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632964/13415_7#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 291497613;8418 ERS464617 ERX589518 GENOMIC 10646335 513401600 2014-09-23 SC_RUN_13415_7#5 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632964/13415_7#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632964/13415_7#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#5 ERR714503 SC_EXP_14410_8#61 224 1978d27ed5eb137ad5fe6cebe088275b;a09aefa05564a2f597e0e40795439673 1313 f8198fb51d46b617c5bf9b3c0a305114;c5737b8bb1ab801afdb338e3ac8ef201 SAMEA2658472 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714503/ERR714503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714503/ERR714503_2.fastq.gz 5292870 WGS GPS_ZA_1533-sc-2021077 RANDOM 186542582;187461211 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714503/ERR714503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714503/ERR714503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714503/14410_8#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714503/14410_8#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714503/ERR714503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714503/ERR714503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714503/14410_8#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714503/14410_8#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 308010155;8638 ERS508500 ERX658425 GENOMIC 11883107 529287000 2015-01-08 SC_RUN_14410_8#61 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714503/14410_8#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714503/14410_8#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_8#61 ERR701780 SC_EXP_14257_1#3 234 75f59b7f769e1c9a35038cfda78c75be;ee64edc598fb32237dcb3588e46f244a 1313 4228e2b7f15cf52166a6914b241a534e;90f4d7ede4f4d5562774ad2b01cc75ef SAMEA2658282 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701780/ERR701780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701780/ERR701780_2.fastq.gz 6222794 WGS GPS_ZA_1380-sc-2020887 RANDOM 197772072;202899201 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701780/ERR701780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701780/ERR701780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701780/14257_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701780/14257_1#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701780/ERR701780_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701780/ERR701780_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701780/14257_1#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701780/14257_1#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 331645313;10203 ERS508310 ERX646043 GENOMIC 11814730 622279400 2014-12-16 SC_RUN_14257_1#3 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701780/14257_1#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701780/14257_1#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#3 ERR633027 SC_EXP_13415_8#2 232 36d5fd9edfdbca2fe6fc3c508a31534a;3eba83185763f881a1a187c969b23913 1313 24827435a4476feefde32ecc8a665035;b9414f9d171d211db12938d930d670e3 SAMEA2554209 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633027/ERR633027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633027/ERR633027_2.fastq.gz 4986010 WGS GPS_ZA_1098-sc-1951247 RANDOM 168544259;173537112 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633027/ERR633027_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633027/ERR633027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633027/13415_8#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633027/13415_8#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633027/ERR633027_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633027/ERR633027_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633027/13415_8#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633027/13415_8#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 283172983;8055 ERS464710 ERX589581 GENOMIC 10663318 498601000 2014-09-23 SC_RUN_13415_8#2 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633027/13415_8#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633027/13415_8#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#2 ERR600527 SC_EXP_13415_6#27 231 d541cc16594aea379e907c2efe74e7b6;c1f958890289a1da341f79fe125a9a30 1313 056095b5f07e5006b797d423255489ea;d27819586cf25d19ad594ff8cf66e6c5 SAMEA2554042 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600527/ERR600527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600527/ERR600527_2.fastq.gz 4549580 WGS GPS_ZA_931-sc-1951078 RANDOM 151048840;155735922 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600527/ERR600527_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600527/ERR600527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600527/13415_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600527/13415_6#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600527/ERR600527_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600527/ERR600527_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600527/13415_6#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600527/13415_6#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 252564064;7464 ERS464543 ERX557356 GENOMIC 10631302 454958000 2014-09-16 SC_RUN_13415_6#27 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600527/13415_6#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600527/13415_6#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_6#27 ERR600326 SC_EXP_13415_4#16 250 dda5a4923d2187939632446fd517e3a0;5eb615b73dbd77f6c1de212cc234b2bb 1313 20543116d78dbbc18996473dc25ba99b;c71fc0f83d54aeda43f045bc3e3901ea SAMEA2553792 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600326/ERR600326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600326/ERR600326_2.fastq.gz 4631756 WGS GPS_ZA_728-sc-1950873 RANDOM 148004142;154223660 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600326/ERR600326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600326/ERR600326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600326/13415_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600326/13415_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600326/ERR600326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600326/ERR600326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600326/13415_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600326/13415_4#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248032616;7573 ERS464293 ERX557155 GENOMIC 10631263 463175600 2014-09-16 SC_RUN_13415_4#16 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600326/13415_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600326/13415_4#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_4#16 ERR600410 SC_EXP_13415_5#5 246 178881d0381983456f4f172063d0a6e7;5dac90d60f4b5db2f3b74f390e3a279b 1313 8dcbf91ea8d649d4eb2bbe14fb696da9;0813f3d18e644d7f5e9d3153ee3420ea SAMEA2553877 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600410/ERR600410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600410/ERR600410_2.fastq.gz 5260274 WGS GPS_ZA_813-sc-1950959 RANDOM 173144035;179557892 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600410/ERR600410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600410/ERR600410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600410/13415_5#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600410/13415_5#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600410/ERR600410_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600410/ERR600410_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600410/13415_5#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600410/13415_5#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293725520;8554 ERS464378 ERX557239 GENOMIC 10646238 526027400 2014-09-16 SC_RUN_13415_5#5 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600410/13415_5#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600410/13415_5#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#5 ERR596385 SC_EXP_13353_7#14 259 1f2fc1de9a8f09e6b94ef1b6349687bf;2bdc08fe89e760e0fafd3d4d5c0f81ea 1313 b63c83beb853b3f20ddaa6c703325d21;510e4b5a94aec230e6d778b89dff3163 SAMEA2521755 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596385/ERR596385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596385/ERR596385_2.fastq.gz 9283390 WGS 2012220590-sc-1947049 RANDOM 305587429;318982602 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596385/ERR596385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596385/ERR596385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596385/13353_7#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596385/13353_7#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596385/ERR596385_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596385/ERR596385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596385/13353_7#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596385/13353_7#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 521608097;14319 ERS455295 ERX553348 GENOMIC 10552895 928339000 2014-09-09 SC_RUN_13353_7#14 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596385/13353_7#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596385/13353_7#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#14 ERR600600 SC_EXP_13415_7#11 225 df18da8c52588f8dc97f6b654e338b46;38fcc77fd3f14f699abd3a05d3d4c959 1313 ccc34424e4d569d5af6471d113982625;8cd2b29eb28a7898ad2f75b47eeff2e1 SAMEA2554122 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600600/ERR600600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600600/ERR600600_2.fastq.gz 4605644 WGS GPS_ZA_1011-sc-1951159 RANDOM 154201924;159919555 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600600/ERR600600_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600600/ERR600600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600600/13415_7#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600600/13415_7#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600600/ERR600600_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600600/ERR600600_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600600/13415_7#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600600/13415_7#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259627887;7550 ERS464623 ERX557429 GENOMIC 10646312 460564400 2014-09-16 SC_RUN_13415_7#11 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600600/13415_7#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600600/13415_7#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_7#11 ERR568570 SC_EXP_12837_2#53 237 c4d7db365ce3ba28d3cdd83b5bd80d5c;9aff6091774ceaf3281c1168dc03245d 1313 7748a74af596d8f1b4cde32b5f804f72;91b2c4e5684fed45b5555bdb1b7e528a SAMEA2434553 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568570/ERR568570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568570/ERR568570_2.fastq.gz 5167836 WGS SA_GPS_SP448-sc-1895617 RANDOM 174334713;177967666 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568570/ERR568570_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568570/ERR568570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568570/12837_2#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568570/12837_2#53.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568570/ERR568570_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568570/ERR568570_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568570/12837_2#53.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568570/12837_2#53.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293087525;8564 ERS428730 ERX527559 GENOMIC 9967244 516783600 2014-07-23 SC_RUN_12837_2#53 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568570/12837_2#53.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568570/12837_2#53.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_2#53 ERR352116 SC_EXP_10396_8#23 250 50ae1cd6ffebf092d29b080b1e31df2d;b97ed515353ebb522e7f4f70f6c825b6 1313 548236a1c639b7ef563dd3e337cb4dab;c144ef99dee4e04af5f08a1192be78ca SAMEA1971756 2013-10-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352116/ERR352116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352116/ERR352116_2.fastq.gz 6297464 WGS PBCN0468-sc-2013-03-27T13:21:35Z-1603775 RANDOM 206444960;219115969 CRAM;CRAI Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352116/ERR352116_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR352/ERR352116/ERR352116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352116/10396_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352116/10396_8#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352116/ERR352116_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR352/ERR352116/ERR352116_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352116/10396_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR352/ERR352116/10396_8#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 349618358;10237 ERS225908 ERX324899 GENOMIC 7811803 629746400 2013-10-14 SC_RUN_10396_8#23 fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352116/10396_8#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR352/ERR352116/10396_8#23.cram.crai Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA257940 10396_8#23 ERR505925 SC_EXP_12291_6#34 219 bc7630ff44443d195885f31857de2f6a;ab3e7b13a0ef0f20f7f1cc58712097b8 1313 bdb6d9b5534a928dbfe83a0e0a71406f;74d9d6e3b470b6bafed1ac134f76bc2b SAMEA2298216 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505925/ERR505925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505925/ERR505925_2.fastq.gz 4100366 WGS SA_GPS_SP150-sc-1810426 RANDOM 124254507;128701502 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505925/ERR505925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505925/ERR505925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505925/12291_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505925/12291_6#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505925/ERR505925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505925/ERR505925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505925/12291_6#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505925/12291_6#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 205448268;6808 ERS390674 ERX471282 GENOMIC 9367852 410036600 2014-05-19 SC_RUN_12291_6#34 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505925/12291_6#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505925/12291_6#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_6#34 ERR505998 SC_EXP_12299_1#14 227 f4f915389c19023fe98f4d63b38a480c;dab26cdbb56294052cd59186ba0e1be3 1313 e8b1defd4fe638cd49b5b8633b4351e4;ff0685568858b96a4e7eadee7c72669c SAMEA2336126 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505998/ERR505998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505998/ERR505998_2.fastq.gz 5446132 WGS 2009215658-sc-1811056 RANDOM 178641363;184734915 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505998/ERR505998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505998/ERR505998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505998/12299_1#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505998/12299_1#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505998/ERR505998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505998/ERR505998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505998/12299_1#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505998/12299_1#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298345344;8964 ERS394320 ERX471355 GENOMIC 9446534 544613200 2014-05-19 SC_RUN_12299_1#14 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505998/12299_1#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505998/12299_1#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#14 ERR502545 SC_EXP_12273_1#89 250 5d2d3205c7e83a6e791b319eee8cd8d8;24e0f9c39fc441e6ff0b814046fc70c4 1313 e723f01036a085751341fb4a42372e7f;eae61908880d10a515343bd396573f19 SAMEA2238754 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502545/ERR502545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502545/ERR502545_2.fastq.gz 4123476 WGS 2100261-sc-2013-11-05T12:01:52Z-1750117 RANDOM 116865473;122371887 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502545/ERR502545_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502545/ERR502545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502545/12273_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502545/12273_1#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR502/ERR502545/ERR502545_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR502/ERR502545/ERR502545_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502545/12273_1#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502545/12273_1#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 195793890;6779 ERS367566 ERX467902 GENOMIC 9341035 412347600 2014-05-12 SC_RUN_12273_1#89 fasp.sra.ebi.ac.uk:/vol1/run/ERR502/ERR502545/12273_1#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR502/ERR502545/12273_1#89.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA309978 12273_1#89 ERR501525 SC_EXP_12290_2#66 221 0e7c4ac5b22f2a38aa1864fd35e000db;8986d16c65a81536368d952f024993d7 1313 90636fd4598b084195e9b46d0da29d54;79e073a09fc12dada780a0e9b8add205 SAMEA2341544 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501525/ERR501525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501525/ERR501525_2.fastq.gz 4119796 WGS 3075-sc-1811623 RANDOM 122939278;129083941 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501525/ERR501525_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501525/ERR501525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501525/12290_2#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501525/12290_2#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501525/ERR501525_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501525/ERR501525_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501525/12290_2#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501525/12290_2#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 205152600;6772 ERS399215 ERX466882 GENOMIC 9467297 411979600 2014-05-12 SC_RUN_12290_2#66 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501525/12290_2#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501525/12290_2#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_2#66 ERR490833 SC_EXP_12169_1#34 224 3f8a2fa0e923178f239d5988e8e4c4bd;e144c97c2510fdc2a74d0849862f800e 1313 019134b882f06972bc5f0452a20da341;6a2f40abe306715b2bf7b5b5dbc75fc4 SAMEA2298216 2014-04-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490833/ERR490833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490833/ERR490833_2.fastq.gz 2569158 WGS SA_GPS_SP150-sc-1810426 RANDOM 70842284;72769757 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490833/ERR490833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR490/ERR490833/ERR490833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490833/12169_1#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490833/12169_1#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490833/ERR490833_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR490/ERR490833/ERR490833_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490833/12169_1#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR490/ERR490833/12169_1#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 114713787;4343 ERS390674 ERX456287 GENOMIC 9367852 256915800 2014-04-28 SC_RUN_12169_1#34 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490833/12169_1#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR490/ERR490833/12169_1#34.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA304050 12291_6#34 ERR461890 SC_EXP_11893_1#66 234 2b65a37751a6858fd3ccb4dcf309b2e8;c1ba3d8c5de12592de981f1ff9068e95 1313 d46faf54cf5505a5cfeb1f4d878cf6a0;a89afbaf175074f27b82d0877c2fdbb5 SAMEA2238824 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461890/ERR461890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461890/ERR461890_2.fastq.gz 3883328 WGS 2103451-sc-2013-11-05T12:03:02Z-1750187 RANDOM 131411236;135280565 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461890/ERR461890_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461890/ERR461890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461890/11893_1#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461890/11893_1#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461890/ERR461890_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461890/ERR461890_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461890/11893_1#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461890/11893_1#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 219594697;6439 ERS367636 ERX428231 GENOMIC 9028144 388332800 2014-03-18 SC_RUN_11893_1#66 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461890/11893_1#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461890/11893_1#66.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461575 SC_EXP_11861_3#22 226 3eef3fdca11ac87b34e13952fca95064;acd697c13e1d9b72092fdd0a2e4bd728 1313 53090584345e42acbfa205e837918cd8;8de28e106f7f2dcb5471e3e6c951d903 SAMEA2238876 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461575/ERR461575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461575/ERR461575_2.fastq.gz 4440160 WGS 2110454-sc-2013-11-05T12:04:12Z-1750240 RANDOM 145181209;151038140 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461575/ERR461575_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461575/ERR461575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461575/11861_3#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461575/11861_3#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461575/ERR461575_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461575/ERR461575_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461575/11861_3#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461575/11861_3#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 243121870;7349 ERS367688 ERX427916 GENOMIC 9016268 444016000 2014-03-18 SC_RUN_11861_3#22 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461575/11861_3#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461575/11861_3#22.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR433605 SC_EXP_11657_4#4 219 84b4e08ce09b845cc589a11d6248c316;b34bd8762f9a3d9597c33376e4fa32a7 1313 dba8f414e869e7791858a83d0761c05e;72f82a998f53428ae9812b69444caa21 SAMEA2203783 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433605/ERR433605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433605/ERR433605_2.fastq.gz 5765338 WGS 2009215893-sc-2013-10-09T11:49:21Z-1712372 RANDOM 189889878;197309297 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433605/ERR433605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433605/ERR433605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433605/11657_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433605/11657_4#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433605/ERR433605_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433605/ERR433605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433605/11657_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433605/11657_4#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 320091907;9571 ERS356287 ERX399880 GENOMIC 8529800 576533800 2014-02-18 SC_RUN_11657_4#4 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433605/11657_4#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433605/11657_4#4.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_4#4 ERR2305108 SC_EXP_22695_3#67 432 3aa37998eda26d049f1468c6e360db13;5d846c28d7288a7151c6fd6ff780d0b4 1313 84d45b29930fcb95d22bc04c91fc50c4;994a692157162c7f89e711060a66dfc0 SAMEA104034656 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305108/ERR2305108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305108/ERR2305108_2.fastq.gz 2240096 WGS e6f732c0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 59264851;81179897 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305108/ERR2305108_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/008/ERR2305108/ERR2305108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305108/22695_3#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305108/22695_3#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305108/ERR2305108_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/008/ERR2305108/ERR2305108_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305108/22695_3#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305108/22695_3#67.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 103557846;3835 ERS1698549 ERX2356418 GENOMIC DN477140L:C9 338254496 2018-02-16 SC_RUN_22695_3#67 95 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305108/22695_3#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305108/22695_3#67.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808621 ERR2090903 SC_EXP_22841_2#172 404 015a32346fd81d7b51fadf4729856da7;532ddc4191fc84e8d08d1af3e98fbd42 1313 9f558bd1cbbbf671b0de945e3b944096;f10686f98f95b58fa76965b53cdc8647 SAMEA104035755 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090903/ERR2090903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090903/ERR2090903_2.fastq.gz 2512688 WGS bb148960-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 53406042;58913319 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090903/ERR2090903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090903/ERR2090903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090903/22841_2#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090903/22841_2#172.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090903/ERR2090903_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090903/ERR2090903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090903/22841_2#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090903/22841_2#172.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79074531;4245 ERS1699648 ERX2147697 GENOMIC DN483654V:E10 314086000 2017-08-08 SC_RUN_22841_2#172 100 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090903/22841_2#172.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090903/22841_2#172.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#172 ERR2090918 SC_EXP_22841_2#187 376 4a9f24c3b3d68c87ced636cb62e047d9;f917810cca48a71a4f0db8aee626a622 1313 5ec84e3dc02eba33af9fd3b9e5d967b5;3ffdc775ef2028333696508b80f6f8d3 SAMEA104035770 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090918/ERR2090918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090918/ERR2090918_2.fastq.gz 2587876 WGS bba075b0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 54974623;59414175 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090918/ERR2090918_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090918/ERR2090918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090918/22841_2#187.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090918/22841_2#187.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090918/ERR2090918_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090918/ERR2090918_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090918/22841_2#187.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090918/22841_2#187.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80418769;4349 ERS1699663 ERX2147712 GENOMIC DN483654V:D12 323484500 2017-08-08 SC_RUN_22841_2#187 105 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090918/22841_2#187.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090918/22841_2#187.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#187 ERR338206 SC_EXP_10071_4#42 215 a64b80d5e1a107de5220e93e7fa751bf 1313 2c8d4836a423ae9d7e0641bdf1e270fd;41a3faa09394734c4fe6239145be93db SAMEA2060010 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338206/ERR338206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338206/ERR338206_2.fastq.gz 2583476 WGS PBCN0336-sc-2013-03-27T13:19:50Z-1603666 RANDOM 167468262;174602310 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338206/ERR338206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338206/ERR338206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338206/10071_4#42.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338206/ERR338206_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338206/ERR338206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338206/10071_4#42.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 471182526 ERS225800 ERX311111 GENOMIC 7400497 516695200 2013-09-03 SC_RUN_10071_4#42 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338206/10071_4#42.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#42 ERR338203 SC_EXP_10071_4#39 215 90c15fc0134a1d4435d7485fdda842ec 1313 e6184ad3b858c9c3e10235777bd8716d;6e079e762d3301aeb386ae0abffb5a8f SAMEA2060008 2013-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338203/ERR338203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338203/ERR338203_2.fastq.gz 1502219 WGS PBCN0332-sc-2013-03-27T13:19:47Z-1603663 RANDOM 97951231;101723325 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338203/ERR338203_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR338/ERR338203/ERR338203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338203/10071_4#39.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338203/ERR338203_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR338/ERR338203/ERR338203_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR338/ERR338203/10071_4#39.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 275045498 ERS225797 ERX311108 GENOMIC 7400556 300443800 2013-09-03 SC_RUN_10071_4#39 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR338/ERR338203/10071_4#39.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA248742 10071_4#39 ERR1202260 SC_EXP_17870_7#190 463 672a1d88121d2d8c8a22df48b9d244dc;511c032b5dcd531990013726068179b5 1313 db8db097384c9906e429920bf2c7338b;b6fe6fca07f73632cab5676f69e6f831 SAMEA3389804 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202260/ERR1202260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202260/ERR1202260_2.fastq.gz 2412798 WGS GPS_MW_C12869-sc-2296048 RANDOM 46532205;49383352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202260/ERR1202260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/000/ERR1202260/ERR1202260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202260/17870_7#190.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202260/17870_7#190.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202260/ERR1202260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/000/ERR1202260/ERR1202260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202260/17870_7#190.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202260/17870_7#190.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 71275665;4008 ERS725907 ERX1274502 GENOMIC 14978454 301599750 2016-01-12 SC_RUN_17870_7#190 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202260/17870_7#190.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202260/17870_7#190.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#190 ERR876601 SC_EXP_15608_3#76 211 cc66908bab2506d6cad117fe949939df;3dd30d59703c0b2f17c524bea49eee48 1313 18e19a3573b19e7c90f2b3939764c44d;635d848d1732829d6ebeab2c33d332c9 SAMEA3175829 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876601/ERR876601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876601/ERR876601_2.fastq.gz 5169158 WGS GPS_SI_851_P-sc-2190868 RANDOM 158673078;163795474 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876601/ERR876601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876601/ERR876601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876601/15608_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876601/15608_3#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876601/ERR876601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876601/ERR876601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876601/15608_3#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876601/15608_3#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260632881;8379 ERS628777 ERX956164 GENOMIC 13024307 516915800 2015-05-12 SC_RUN_15608_3#76 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876601/15608_3#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876601/15608_3#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_3#76 ERR742639 SC_EXP_14673_4#43 209 ccc94f8976788b369fe68fcb14cc109b;2109f7621d0ce8ece8b6071987657bf1 1313 418c21763a3fa20467a220d1ab8a5b3b;0dd0b0e51b0e77c989a92529ab02a8c0 SAMEA2796736 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742639/ERR742639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742639/ERR742639_2.fastq.gz 4658538 WGS GPS_US_2009215911_R1-sc-2138720 RANDOM 149041664;154116747 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742639/ERR742639_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742639/ERR742639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742639/14673_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742639/14673_4#43.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742639/ERR742639_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742639/ERR742639_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742639/14673_4#43.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742639/14673_4#43.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 245988595;7517 ERS558347 ERX686322 GENOMIC 12061998 465853800 2015-01-27 SC_RUN_14673_4#43 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742639/14673_4#43.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742639/14673_4#43.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#43 ERR662333 SC_EXP_13710_1#17 186 8b1b91ac6e26ae7adc5646d0e62a51e4;a7220af94d0526e205e5e70177a069b6 1313 bf89342a7eb982f6c4dd7a7171abb301;b47ec871eaaf07798b3a0264c1cd5b41 SAMEA2521776 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662333/ERR662333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662333/ERR662333_2.fastq.gz 6079552 WGS 2012224310-sc-1947070 RANDOM 192634494;199090964 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662333/ERR662333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662333/ERR662333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662333/13710_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662333/13710_1#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662333/ERR662333_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662333/ERR662333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662333/13710_1#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662333/13710_1#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 324159092;10040 ERS455316 ERX618609 GENOMIC 11100344 607955200 2014-10-28 SC_RUN_13710_1#17 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662333/13710_1#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662333/13710_1#17.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#17 ERR662432 SC_EXP_13710_2#44 196 6bb2415160b4d773993cd493e874ad37;dc5ddabb4961fe05a3fa3b986299f225 1313 cb63e7e05cd684b88e8f388e88b2da40;451943de32560de36a7f80f288007cb2 SAMEA2521720 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662432/ERR662432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662432/ERR662432_2.fastq.gz 6408144 WGS 2012214461-sc-1947013 RANDOM 212286871;220070123 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662432/ERR662432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662432/ERR662432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662432/13710_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662432/13710_2#44.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662432/ERR662432_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662432/ERR662432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662432/13710_2#44.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662432/13710_2#44.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 361866285;10483 ERS455260 ERX618708 GENOMIC 11100480 640814400 2014-10-28 SC_RUN_13710_2#44 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662432/13710_2#44.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662432/13710_2#44.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_2#44 ERR632971 SC_EXP_13415_7#42 225 76d7c94be7969ee7c8ba7f112ba67b03;9c7127b0319995b654219f81fd450f21 1313 c44f0b912d54edd35aa60bb6eb36db19;c46f0f70c0df448ff86d559d34056428 SAMEA2554153 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632971/ERR632971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632971/ERR632971_2.fastq.gz 4488466 WGS GPS_ZA_1042-sc-1951190 RANDOM 148769515;154721956 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632971/ERR632971_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632971/ERR632971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632971/13415_7#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632971/13415_7#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632971/ERR632971_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632971/ERR632971_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632971/13415_7#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632971/13415_7#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249638042;7462 ERS464654 ERX589525 GENOMIC 10646304 448846600 2014-09-23 SC_RUN_13415_7#42 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632971/13415_7#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632971/13415_7#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_7#42 ERR563803 SC_EXP_12754_2#49 209 f9686d3b5f0d176ab5dedd1b869769ae;a1cf5ecfd4b1a579ba74be07bea45a6f 1313 0b7ea653f21e34359bcff3af11365138;a7d8160fa2d9c01a3be220b184155637 SAMEA2383069 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563803/ERR563803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563803/ERR563803_2.fastq.gz 5166898 WGS 2093895_II-sc-1870319 RANDOM 173643128;177305238 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563803/ERR563803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563803/ERR563803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563803/12754_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563803/12754_2#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563803/ERR563803_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563803/ERR563803_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563803/12754_2#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563803/12754_2#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 289741982;8552 ERS409394 ERX522828 GENOMIC 9918573 516689800 2014-07-16 SC_RUN_12754_2#49 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563803/12754_2#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563803/12754_2#49.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#49 ERR554893 SC_EXP_12673_6#62 221 c8700cadb3c867fe468ae0fd9d9617e4;3ac076df39b2c08d2d0ff6082901cad1 1313 3ad67d4bff2fdb46a7d04913f379ef04;bcce774e85130270a7fa659fb7e60888 SAMEA2382607 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554893/ERR554893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554893/ERR554893_2.fastq.gz 4795302 WGS 981819_II-sc-1869852 RANDOM 158517560;178661030 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554893/ERR554893_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554893/ERR554893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554893/12673_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554893/12673_6#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554893/ERR554893_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554893/ERR554893_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554893/12673_6#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554893/12673_6#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 281861428;7953 ERS408932 ERX513962 GENOMIC 9798964 479530200 2014-07-02 SC_RUN_12673_6#62 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554893/12673_6#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554893/12673_6#62.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#62 ERR554868 SC_EXP_12673_6#37 221 7242658f405fef9e7b325227bc6161c9;fe131ed46e8c8304cacb6eb2d34875d8 1313 f3a7c0a8fb158017f6eb946cde8f1610;97bd8820a1ed2533cb4c77d06b77b022 SAMEA2382582 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554868/ERR554868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554868/ERR554868_2.fastq.gz 4889328 WGS 2120097-sc-1869827 RANDOM 160913479;181808563 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554868/ERR554868_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554868/ERR554868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554868/12673_6#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554868/12673_6#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554868/ERR554868_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554868/ERR554868_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554868/12673_6#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554868/12673_6#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 284633505;8085 ERS408907 ERX513937 GENOMIC 9798949 488932800 2014-07-02 SC_RUN_12673_6#37 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554868/12673_6#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554868/12673_6#37.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#37 ERR554848 SC_EXP_12673_6#17 221 bc4f76f9349740ac058f6ef0932ea8ab;fbe11e28d27d53a205abd5031602a8df 1313 f3076d4b267a5047298a7ae3a1c5a2a2;8c4a8f297835a560384c7de4066f8ec8 SAMEA2382562 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554848/ERR554848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554848/ERR554848_2.fastq.gz 4685240 WGS 2110669-sc-1869807 RANDOM 154094196;174134725 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554848/ERR554848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554848/ERR554848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554848/12673_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554848/12673_6#17.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554848/ERR554848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554848/ERR554848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554848/12673_6#17.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554848/12673_6#17.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 273193686;7749 ERS408887 ERX513917 GENOMIC 9798899 468524000 2014-07-02 SC_RUN_12673_6#17 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554848/12673_6#17.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554848/12673_6#17.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 ERR505746 SC_EXP_12291_4#30 230 80f5f4808f4ef6673a1439c7b043618f;335f7327697e47696bc8c3ab52412a04 1313 f4b9030c475a58306957a7b05869f4d3;41486d46c4bbf06a310d165212a0f11b SAMEA2335962 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505746/ERR505746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505746/ERR505746_2.fastq.gz 4613362 WGS 2010205423-sc-1810890 RANDOM 146434865;152457381 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505746/ERR505746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505746/ERR505746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505746/12291_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505746/12291_4#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505746/ERR505746_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505746/ERR505746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505746/12291_4#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505746/12291_4#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 247014794;7589 ERS394156 ERX471103 GENOMIC 9444705 461336200 2014-05-19 SC_RUN_12291_4#30 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505746/12291_4#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505746/12291_4#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_4#30 ERR506046 SC_EXP_12299_1#68 227 ab2e3f6f72a9aeeb5b4dd6c6a45b8d85;24ed85f582252c45fd1e4f4993ec97b5 1313 36916ec756efba64bbcebffa1dc406d2;3c6b7c01b33f89da43e3da71ee939bfd SAMEA2336180 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506046/ERR506046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506046/ERR506046_2.fastq.gz 4471968 WGS 2010216235-sc-1811112 RANDOM 146722261;151910411 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506046/ERR506046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR506/ERR506046/ERR506046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506046/12299_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506046/12299_1#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506046/ERR506046_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR506/ERR506046/ERR506046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506046/12299_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR506/ERR506046/12299_1#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246385639;7401 ERS394374 ERX471403 GENOMIC 9446517 447196800 2014-05-19 SC_RUN_12299_1#68 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506046/12299_1#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR506/ERR506046/12299_1#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12299_1#68 ERR505885 SC_EXP_12291_5#83 230 7b823ec215e083ab15a8271d1888dbf7;bddffe2aa9cba788285d4bc79748cf5a 1313 16f552046d9643ed6cdd49b85d084364;5396da0239190082a8d7d8055f65edf8 SAMEA2336105 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505885/ERR505885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505885/ERR505885_2.fastq.gz 3847316 WGS 2009212662-sc-1811035 RANDOM 117726746;122298422 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505885/ERR505885_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505885/ERR505885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505885/12291_5#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505885/12291_5#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505885/ERR505885_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505885/ERR505885_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505885/12291_5#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505885/12291_5#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 195108093;6361 ERS394299 ERX471242 GENOMIC 9446410 384731600 2014-05-19 SC_RUN_12291_5#83 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505885/12291_5#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505885/12291_5#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#83 ERR501577 SC_EXP_12290_3#37 200 9159f2d5c927eaab0f61c9465f0b32e3;c71b83d7e987e78f5398537b325844df 1313 7b18d82e62d307e396347789d3dbedd2;5c52b9a6bbcf9cd0ca713b87ae738044 SAMEA2341183 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501577/ERR501577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501577/ERR501577_2.fastq.gz 4095140 WGS C18159-sc-1811252 RANDOM 124959363;131189443 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501577/ERR501577_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501577/ERR501577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501577/12290_3#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501577/12290_3#37.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501577/ERR501577_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501577/ERR501577_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501577/12290_3#37.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501577/12290_3#37.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 207652740;6587 ERS398854 ERX466934 GENOMIC 9467232 409514000 2014-05-12 SC_RUN_12290_3#37 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501577/12290_3#37.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501577/12290_3#37.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#37 ERR501601 SC_EXP_12290_3#61 200 f695975f8264470e6b3129a50544be43;4de6ef5bc38c02e80a657d6c0e321337 1313 9b35283e274559c8072750d4fe55072d;2bbc586525e968a85dfd64511c60936f SAMEA2341316 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501601/ERR501601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501601/ERR501601_2.fastq.gz 3459612 WGS A55213-sc-1811387 RANDOM 103219695;108814240 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501601/ERR501601_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501601/ERR501601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501601/12290_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501601/12290_3#61.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501601/ERR501601_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501601/ERR501601_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501601/12290_3#61.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501601/12290_3#61.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 172597731;5719 ERS398987 ERX466958 GENOMIC 9467235 345961200 2014-05-12 SC_RUN_12290_3#61 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501601/12290_3#61.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501601/12290_3#61.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_3#61 ERR461689 SC_EXP_11861_4#45 224 f9ba089724cf58563291e4b5947e6bff;ab01e1dd4fc6fc7d057c0a0a09429100 1313 5022639bc242be62ebb8e0a1a7b881d0;d39f98cd693dd14d1d3e2f54bbc9ef87 SAMEA2238991 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461689/ERR461689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461689/ERR461689_2.fastq.gz 3308782 WGS 2121456-sc-2013-11-05T12:06:08Z-1750356 RANDOM 103995436;109309839 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461689/ERR461689_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461689/ERR461689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461689/11861_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461689/11861_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461689/ERR461689_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461689/ERR461689_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461689/11861_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461689/11861_4#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 174746552;5517 ERS367803 ERX428030 GENOMIC 9016406 330878200 2014-03-18 SC_RUN_11861_4#45 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461689/11861_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461689/11861_4#45.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#45 ERR461437 SC_EXP_11861_1#62 225 5e4ea06e7db8b0bf5f1a37e61b0aba91;80d69ecc49791898e7f7e5922e227f8a 1313 8f398d1a1bfae661d3df437c2891488e;92b96b4017521dc2207e93ef70289ac8 SAMEA2238624 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461437/ERR461437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461437/ERR461437_2.fastq.gz 4287406 WGS 2090334-sc-2013-11-05T11:59:39Z-1749985 RANDOM 136213588;143318076 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461437/ERR461437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461437/ERR461437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461437/11861_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461437/11861_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461437/ERR461437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461437/ERR461437_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461437/11861_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461437/11861_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 230564508;7059 ERS367436 ERX427778 GENOMIC 9016175 428740600 2014-03-18 SC_RUN_11861_1#62 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461437/11861_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461437/11861_1#62.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_1#62 ERR461461 SC_EXP_11861_1#87 225 53e6a2f1909e17a34324fce8c922726e;52451bfb41a72e32a51018983957d3d8 1313 75439257374ac711bec43460f8dbb00e;4a6d588a73ab6a76cd432c4d493a76b4 SAMEA2238652 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461461/ERR461461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461461/ERR461461_2.fastq.gz 4805118 WGS 2091123-sc-2013-11-05T12:00:07Z-1750013 RANDOM 151948694;158494516 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461461/ERR461461_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461461/ERR461461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461461/11861_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461461/11861_1#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461461/ERR461461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461461/ERR461461_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461461/11861_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461461/11861_1#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 254677182;7914 ERS367464 ERX427802 GENOMIC 9016190 480511800 2014-03-18 SC_RUN_11861_1#87 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461461/11861_1#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461461/11861_1#87.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461691 SC_EXP_11861_4#47 224 d743ae503f1752e2afef40070ab6609d;84439a08c6528e1dfa23f6930d08b2fd 1313 82b9d46fdba8846f981a346de7843fa2;1fd9e5ad7014833b6232603c11ba3868 SAMEA2238993 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461691/ERR461691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461691/ERR461691_2.fastq.gz 3711446 WGS 981819-sc-2013-11-05T12:06:10Z-1750358 RANDOM 116172100;122331153 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461691/ERR461691_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461691/ERR461691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461691/11861_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461691/11861_4#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461691/ERR461691_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461691/ERR461691_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461691/11861_4#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461691/11861_4#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 195304923;6149 ERS367805 ERX428032 GENOMIC 9016430 371144600 2014-03-18 SC_RUN_11861_4#47 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461691/11861_4#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461691/11861_4#47.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_4#47 ERR461305 SC_EXP_11860_8#21 222 e85f8c174c7f048394bdc11808e5c705;a6c50c2c672f70a3093279cb0207b3fc 1313 ae468a2893cbc1c41d34a02a4ca1ae33;32321e1a9c68a33c5b3d848b8c6dc0a1 SAMEA2239155 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461305/ERR461305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461305/ERR461305_2.fastq.gz 4810018 WGS 2001014-sc-2013-11-05T12:08:52Z-1750526 RANDOM 151586989;159476231 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461305/ERR461305_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461305/ERR461305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461305/11860_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461305/11860_8#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461305/ERR461305_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461305/ERR461305_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461305/11860_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461305/11860_8#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 256471885;7918 ERS367967 ERX427646 GENOMIC 9015315 481001800 2014-03-18 SC_RUN_11860_8#21 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461305/11860_8#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461305/11860_8#21.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#21 ERR461567 SC_EXP_11861_3#14 226 a4d75804415c29359c7563115c1fe1b9;ea09b3db040160755e94e087287dcfa1 1313 adafa7daca38cf4ebc317400d08318c3;5c2d8abb9839768d8fdcc84f78fa434d SAMEA2238868 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461567/ERR461567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461567/ERR461567_2.fastq.gz 4017320 WGS 2110270-sc-2013-11-05T12:04:04Z-1750232 RANDOM 131299826;137447143 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461567/ERR461567_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461567/ERR461567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461567/11861_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461567/11861_3#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461567/ERR461567_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461567/ERR461567_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461567/11861_3#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461567/11861_3#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 221519349;6681 ERS367680 ERX427908 GENOMIC 9016267 401732000 2014-03-18 SC_RUN_11861_3#14 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461567/11861_3#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461567/11861_3#14.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#14 ERR460994 SC_EXP_11860_4#82 217 92de53783c38c6da65d7f55779e96d91;41897a5393653a41fa51f146a3f7ff06 1313 29362ddf7c23aca56f2ebff4c3d6035f;f9e0f8be9b9c3472a09aa6c3c10967f1 SAMEA2238355 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460994/ERR460994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460994/ERR460994_2.fastq.gz 4241570 WGS 2070154-sc-2013-11-05T11:55:05Z-1749713 RANDOM 140410004;156644265 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460994/ERR460994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460994/ERR460994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460994/11860_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460994/11860_4#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460994/ERR460994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460994/ERR460994_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460994/11860_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460994/11860_4#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 248874908;6975 ERS367167 ERX427335 GENOMIC 9012458 424157000 2014-03-18 SC_RUN_11860_4#82 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460994/11860_4#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460994/11860_4#82.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#82 ERR460987 SC_EXP_11860_4#74 217 447223d677888ef9927425e7a6c9c6c6;14020506d1fd9a67a293e1431a48f66e 1313 b784924683569df31960407ff4f69c06;c56893be3ab9714757eb0491f731e39a SAMEA2238347 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460987/ERR460987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460987/ERR460987_2.fastq.gz 4484948 WGS 2070043-sc-2013-11-05T11:54:58Z-1749705 RANDOM 143712159;151978195 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460987/ERR460987_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460987/ERR460987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460987/11860_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460987/11860_4#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460987/ERR460987_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460987/ERR460987_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460987/11860_4#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460987/11860_4#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 244631276;7401 ERS367159 ERX427328 GENOMIC 9012457 448494800 2014-03-18 SC_RUN_11860_4#74 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460987/11860_4#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460987/11860_4#74.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#74 ERR460986 SC_EXP_11860_4#73 217 4d8d45600fb5ec9682d2d1c6ae84efd4;a23536def60e7005f2fb78337f082e0b 1313 54ecb454017fe2534b0342491e28b197;22dcd34ab567394e1009f8f143b5da72 SAMEA2238346 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460986/ERR460986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460986/ERR460986_2.fastq.gz 4536982 WGS 2070039-sc-2013-11-05T11:54:57Z-1749704 RANDOM 145067671;152486037 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460986/ERR460986_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460986/ERR460986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460986/11860_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460986/11860_4#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460986/ERR460986_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460986/ERR460986_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460986/11860_4#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460986/11860_4#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 243846890;7458 ERS367158 ERX427327 GENOMIC 9012445 453698200 2014-03-18 SC_RUN_11860_4#73 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460986/11860_4#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460986/11860_4#73.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#73 ERR461168 SC_EXP_11860_6#72 233 344c0e8599e87bd17503dd470df6272e;6ddc6f6e1c021b750ba764b9d6a68241 1313 072c9ab4f18c0a5896a1d0d83aa608aa;71a3dda031e2a9e3cede761f7fb2297c SAMEA2238538 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461168/ERR461168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461168/ERR461168_2.fastq.gz 4354384 WGS 2080818-sc-2013-11-05T11:58:10Z-1749898 RANDOM 138485229;146524813 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461168/ERR461168_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461168/ERR461168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461168/11860_6#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461168/11860_6#72.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461168/ERR461168_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461168/ERR461168_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461168/11860_6#72.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461168/11860_6#72.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 234673759;7254 ERS367350 ERX427509 GENOMIC 9015611 435438400 2014-03-18 SC_RUN_11860_6#72 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461168/11860_6#72.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461168/11860_6#72.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR433917 SC_EXP_11658_2#71 231 9f815b00174ef314ce42899ffc728b27;af0020a5ff4f5a4ec34a01c42039786a 1313 b77f3e78b85ddd0f3a4f98155cae5b89;4d8f1aaf999273c9e3d62a7a7b9a1720 SAMEA2203920 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433917/ERR433917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433917/ERR433917_2.fastq.gz 4564970 WGS 2009211102-sc-2013-10-09T11:51:51Z-1712510 RANDOM 148835252;153459908 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433917/ERR433917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433917/ERR433917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433917/11658_2#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433917/11658_2#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433917/ERR433917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433917/ERR433917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433917/11658_2#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433917/11658_2#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 248836675;7507 ERS356431 ERX400192 GENOMIC 8593383 456497000 2014-02-18 SC_RUN_11658_2#71 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433917/11658_2#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433917/11658_2#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#71 ERR064117 SC_EXP_6938_8#3 232 f2323fcc67dc47c079b2a7d18371bf42 1313 f8bffda12f2acfb656f639a7f36e139e;93923348e0679675c350ed7ef167d551 SAMEA1028722 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064117/ERR064117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064117/ERR064117_2.fastq.gz 6677291 WGS SMRU2715-sc-2011-01-27-1062928 RANDOM 446263840;468940441 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064117/ERR064117_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064117/ERR064117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064117/6938_8#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064117/ERR064117_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064117/ERR064117_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064117/6938_8#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1140213816 ERS022225 ERX042090 GENOMIC 3651735 1001593650 2012-03-19 SC_RUN_6938_8#3 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064117/6938_8#3.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064125 SC_EXP_6938_8#11 232 82dd4903af3786b61747a64c4ccf8175 1313 3a597df4a8da432554e74e0ba27eab14;37ba12cbbc589361e6424e3ea6889a87 SAMEA1029113 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064125/ERR064125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064125/ERR064125_2.fastq.gz 3552348 WGS SMRU2723-sc-2011-01-27-1062936 RANDOM 238265046;249616469 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064125/ERR064125_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064125/ERR064125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064125/6938_8#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064125/ERR064125_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064125/ERR064125_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064125/6938_8#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 610886491 ERS022233 ERX042098 GENOMIC 3651743 532852200 2012-03-19 SC_RUN_6938_8#11 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064125/6938_8#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR461258 SC_EXP_11860_7#69 206 94990601c1e6ac30e23f668db252bcd3;323233a35385172ed9e99f86b3f77928 1313 674c7cf157f14a6e4095b161f971bcd6;b0e9fa8299faf72177fb33b9ae394c7b SAMEA2239108 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461258/ERR461258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461258/ERR461258_2.fastq.gz 4048984 WGS 2000139-sc-2013-11-05T12:08:03Z-1750478 RANDOM 129275772;136175538 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461258/ERR461258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461258/ERR461258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461258/11860_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461258/11860_7#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461258/ERR461258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461258/ERR461258_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461258/11860_7#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461258/11860_7#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 219509538;6705 ERS367920 ERX427599 GENOMIC 9014932 404898400 2014-03-18 SC_RUN_11860_7#69 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461258/11860_7#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461258/11860_7#69.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#69 ERR433844 SC_EXP_11658_1#78 235 c726c6dc6535f9efe69eca5767af509c;5a5437b5adccce6c7c51c7db958136c3 1313 b623d92fc9001d0ff893985977dc3a61;9f4f058b480d3e53d5a01a7fb8f9bb62 SAMEA2203373 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433844/ERR433844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433844/ERR433844_2.fastq.gz 3773086 WGS PNI0304-sc-2013-10-09T11:41:40Z-1708888 RANDOM 114393456;119554092 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433844/ERR433844_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433844/ERR433844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433844/11658_1#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433844/11658_1#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433844/ERR433844_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433844/ERR433844_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433844/11658_1#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433844/11658_1#78.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 190029408;6283 ERS355877 ERX400119 GENOMIC 8640111 377308600 2014-02-18 SC_RUN_11658_1#78 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433844/11658_1#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433844/11658_1#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_1#78 ERR064115 SC_EXP_6938_8#1 232 af06a9338e18393b80df500dbf206079 1313 aaf66684e729eb150e7e4641149a68bc;d145f11eb43b671e9ebb03f8e05805c8 SAMEA1028677 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064115/ERR064115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064115/ERR064115_2.fastq.gz 3969058 WGS SMRU2713-sc-2011-01-27-1062926 RANDOM 265034771;277789055 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064115/ERR064115_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064115/ERR064115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064115/6938_8#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064115/ERR064115_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064115/ERR064115_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064115/6938_8#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 678762759 ERS022223 ERX042088 GENOMIC 3651733 595358700 2012-03-19 SC_RUN_6938_8#1 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064115/6938_8#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR064110 SC_EXP_6938_7#20 236 76817e6104598808ca0d6416d4c9ed11 1313 4b636958b05475b4dd672a8d02b8e6a5;0e9299c3216c24c3ea08f32d194c031c SAMEA1028925 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064110/ERR064110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064110/ERR064110_2.fastq.gz 9094586 WGS SMRU2708-sc-2011-01-27-1062921 RANDOM 602187705;640137254 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064110/ERR064110_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064110/ERR064110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064110/6938_7#20.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064110/ERR064110_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064110/ERR064110_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064110/6938_7#20.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 1557115785 ERS022218 ERX042083 GENOMIC 3651728 1364187900 2012-03-19 SC_RUN_6938_7#20 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064110/6938_7#20.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR048104 SC_EXP_6631_3#19 227 fc0b92463d6ebd821ef480ed25f7b7f4 1313 afc018c7da37ef3a230c0e13de4360a3;8eb35571c70020fbde6bbb62c0172617 SAMEA1023934 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048104/ERR048104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048104/ERR048104_2.fastq.gz 3482824 WGS SMRU427-sc-2011-01-27-1060616 RANDOM 195572879;184634413 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048104/ERR048104_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048104/ERR048104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048104/6631_3#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048104/ERR048104_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048104/ERR048104_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048104/6631_3#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 491773044 ERS019585 ERX025167 GENOMIC 2952214 522423600 2011-10-11 SC_RUN_6631_3#19 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048104/6631_3#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR051615 SC_EXP_6731_4#13 216 dc00d7c0b1c9591dfbd52d7b5e15b432 1313 3b054db56ae2cef04a17b58d5d954e5f;d290921c0c08c9bbb900a7c9d039ea03 SAMEA1024641 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051615/ERR051615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051615/ERR051615_2.fastq.gz 1693002 WGS SMRU1069-sc-2011-01-27-1061282 RANDOM 91414226;92436619 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051615/ERR051615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051615/ERR051615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051615/6731_4#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051615/ERR051615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051615/ERR051615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051615/6731_4#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 236981183 ERS020579 ERX028663 GENOMIC 3246294 253950300 2011-11-02 SC_RUN_6731_4#13 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051615/6731_4#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR054426 SC_EXP_6753_1#13 224 f1583cdc3ffb0506d96f41ab348a094b 1313 6c70165d5146f793980caaf9174a94d2;dccd1a2accdb59f96b81429dcf2fe6cc SAMEA1025156 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054426/ERR054426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054426/ERR054426_2.fastq.gz 4364539 WGS SMRU1477-sc-2011-01-27-1061690 RANDOM 229650412;232389238 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054426/ERR054426_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054426/ERR054426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054426/6753_1#13.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054426/ERR054426_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054426/ERR054426_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054426/6753_1#13.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 583255759 ERS020987 ERX031472 GENOMIC 3414161 654680850 2011-11-15 SC_RUN_6753_1#13 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054426/6753_1#13.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR051603 SC_EXP_6731_4#1 216 139b6cc611763783790c07ca9f414ccc 1313 960504ca37af6e1b360eb6fac3bdef8f;f0a7a394d8f0125fd9c402764cd0a3cc SAMEA1024775 2011-11-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051603/ERR051603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051603/ERR051603_2.fastq.gz 2435781 WGS SMRU1057-sc-2011-01-27-1061270 RANDOM 124163138;126664834 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051603/ERR051603_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR051/ERR051603/ERR051603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051603/6731_4#1.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051603/ERR051603_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR051/ERR051603/ERR051603_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR051/ERR051603/6731_4#1.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 327001631 ERS020567 ERX028651 GENOMIC 3246282 365367150 2011-11-02 SC_RUN_6731_4#1 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR051/ERR051603/6731_4#1.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA064541 Streptococcus pneumoniae Streptococcus pneumoniae ERR067935 SC_EXP_7004_7#72 227 c1652ed82d4dab02b18586e86422cf86 1313 7dcf75260c796e800de0eb3566fd7d5d;a5cd6ef22342d82f98749dca76f859de SAMEA1029228 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067935/ERR067935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067935/ERR067935_2.fastq.gz 2422138 WGS SMRU2904-sc-2011-01-27-1063117 RANDOM 155379721;149773935 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067935/ERR067935_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067935/ERR067935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067935/7004_7#72.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067935/ERR067935_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067935/ERR067935_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067935/7004_7#72.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2480 ERP000599 384494434 ERS022414 ERX045798 GENOMIC 3740259 363320700 2012-03-19 SC_RUN_7004_7#72 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067935/7004_7#72.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:49Z-1718 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067824 SC_EXP_6972_4#9 234 f26e35e09dbe11e1cd84f4276da22a75 1313 575645c49266565e16f33a68317e59dd;9c24de829269521486220655af762758 SAMEA1028855 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067824/ERR067824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067824/ERR067824_2.fastq.gz 5035443 WGS SMRU2601-sc-2011-01-27-1062814 RANDOM 317167848;324503427 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067824/ERR067824_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067824/ERR067824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067824/6972_4#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067824/ERR067824_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067824/ERR067824_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067824/6972_4#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 817349086 ERS022111 ERX045687 GENOMIC 3686276 755316450 2012-01-16 SC_RUN_6972_4#9 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067824/6972_4#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067821 SC_EXP_6972_4#6 234 7f21b83381d32970ef3b89a382c9e03e 1313 3010acb189926f8b8673128c782c704a;6f8a4cf36488f4a620c488cf894a5d5e SAMEA1029033 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067821/ERR067821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067821/ERR067821_2.fastq.gz 4504003 WGS SMRU2598-sc-2011-01-27-1062811 RANDOM 281558613;288505205 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067821/ERR067821_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067821/ERR067821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067821/6972_4#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067821/ERR067821_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067821/ERR067821_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067821/6972_4#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 728628247 ERS022108 ERX045684 GENOMIC 3686273 675600450 2012-01-16 SC_RUN_6972_4#6 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067821/6972_4#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR067848 SC_EXP_6972_5#9 233 945e013d2518c1e15187e9a8e644184c 1313 3e43f5f915e6102fb0219d18b4634f4c;f13a269c08f718c880e9f3e7ab6cb1b5 SAMEA1028758 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067848/ERR067848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067848/ERR067848_2.fastq.gz 4639880 WGS SMRU2625-sc-2011-01-27-1062838 RANDOM 294734918;294895424 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067848/ERR067848_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR067/ERR067848/ERR067848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067848/6972_5#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067848/ERR067848_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR067/ERR067848/ERR067848_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR067/ERR067848/6972_5#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 754695194 ERS022135 ERX045711 GENOMIC 3686302 695982000 2012-01-16 SC_RUN_6972_5#9 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR067/ERR067848/6972_5#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA080987 Streptococcus pneumoniae Streptococcus pneumoniae ERR069591 SC_EXP_7011_3#5 205 a92b0cdf8420e2692a339af0b1120ba0 1313 e2497c88324c1f1267aabc8446ce7dc0;237717841a11c330e7ec17dfbb559ec2 SAMEA1029125 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069591/ERR069591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069591/ERR069591_2.fastq.gz 4223303 WGS SMRU2741-sc-2011-01-27-1062954 RANDOM 260048073;268263189 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069591/ERR069591_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069591/ERR069591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069591/7011_3#5.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069591/ERR069591_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069591/ERR069591_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069591/7011_3#5.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 666377339 ERS022251 ERX047444 GENOMIC 3758411 633495450 2012-01-19 SC_RUN_7011_3#5 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069591/7011_3#5.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR069682 SC_EXP_7011_6#24 204 589614fbb961ec67a01b89e97c13ce64 1313 d4ce0e7deb05ee49630ed66b4d5e1f21;469fc8658626229bfdece5c236c5bad5 SAMEA1028662 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069682/ERR069682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069682/ERR069682_2.fastq.gz 4319615 WGS SMRU2832-sc-2011-01-27-1063045 RANDOM 275159229;273516105 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069682/ERR069682_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069682/ERR069682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069682/7011_6#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069682/ERR069682_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069682/ERR069682_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069682/7011_6#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 687074073 ERS022342 ERX047535 GENOMIC 3758602 647942250 2012-01-19 SC_RUN_7011_6#24 59 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069682/7011_6#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA081632 Streptococcus pneumoniae Streptococcus pneumoniae ERR057948 SC_EXP_6823_5#23 245 820904d0c8487a7c32710c068a149ae1 1313 a5dee275313ebb30a176ecd9bca5547e;9ef79253d7b0c67207b8a99a4b2927ff SAMEA1026064 2011-12-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057948/ERR057948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057948/ERR057948_2.fastq.gz 7493854 WGS SMRU1967-sc-2011-01-27-1062180 RANDOM 451334027;469605948 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057948/ERR057948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR057/ERR057948/ERR057948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057948/6823_5#23.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057948/ERR057948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR057/ERR057948/ERR057948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR057/ERR057948/6823_5#23.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 1165279583 ERS021477 ERX035794 GENOMIC 3469196 1124078100 2012-03-22 SC_RUN_6823_5#23 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR057/ERR057948/6823_5#23.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA072558 Streptococcus pneumoniae Streptococcus pneumoniae ERR056760 SC_EXP_6805_2#6 234 ddb90075814874ebde83653f16cf0592 1313 e7483c9dbe9700a156b540f4ac237465;2ef484a1f8095a6f7c253b8e94c60e0b SAMEA1025507 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056760/ERR056760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056760/ERR056760_2.fastq.gz 5349430 WGS SMRU1422-sc-2011-01-27-1061635 RANDOM 271141813;284227981 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056760/ERR056760_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056760/ERR056760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056760/6805_2#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056760/ERR056760_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056760/ERR056760_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056760/6805_2#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 704285196 ERS020932 ERX034604 GENOMIC 3441180 802414500 2011-11-29 SC_RUN_6805_2#6 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056760/6805_2#6.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056795 SC_EXP_6805_3#17 233 93a314285fd067d9418925389b70e991 1313 8a06c721163f3ca5e1f43db11a9e1eaf;fc5c85fe9c32c6e4e67c2398a410d0a5 SAMEA1025434 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056795/ERR056795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056795/ERR056795_2.fastq.gz 7075160 WGS SMRU1457-sc-2011-01-27-1061670 RANDOM 377153612;389522003 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056795/ERR056795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056795/ERR056795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056795/6805_3#17.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056795/ERR056795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056795/ERR056795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056795/6805_3#17.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 950692747 ERS020967 ERX034639 GENOMIC 3441226 1061274000 2011-11-29 SC_RUN_6805_3#17 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056795/6805_3#17.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR056830 SC_EXP_6805_5#4 232 59df2d801ba3cc1dfacae8682a37544a 1313 c3d51d67e00b759315f71794b62c99ea;05f1c0ea576aa55bb7c261b9bf3ab34e SAMEA1025463 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056830/ERR056830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056830/ERR056830_2.fastq.gz 6129972 WGS SMRU1684-sc-2011-01-27-1061897 RANDOM 319002325;332688667 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056830/ERR056830_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056830/ERR056830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056830/6805_5#4.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056830/ERR056830_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056830/ERR056830_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056830/6805_5#4.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 811178183 ERS021194 ERX034674 GENOMIC 3481173 919495800 2011-11-29 SC_RUN_6805_5#4 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056830/6805_5#4.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR316659 SC_EXP_9789_2#88 213 8671f0328d833cbe5c8214ca49396009 1313 0d301a6c635fab2c13152e0044ead0c2;1302fa9f99c52cad1d602407e3743ed5 SAMEA2052022 2013-07-22 ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316659/ERR316659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316659/ERR316659_2.fastq.gz 2588289 WGS D32101-sc-2013-02-18T14:43:02Z-1561787 RANDOM 176354910;194151366 BAM Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316659/ERR316659_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR316/ERR316659/ERR316659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316659/9789_2#88.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316659/ERR316659_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR316/ERR316659/ERR316659_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR316/ERR316659/9789_2#88.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 487835580 ERS215003 ERX289807 GENOMIC 7066830 517657800 2013-07-22 SC_RUN_9789_2#88 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR316/ERR316659/9789_2#88.bam Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA242159 9789_2#88 ERR2090884 SC_EXP_22841_2#153 392 338b9a53c947f8d07e8f6fee082a0597;b86c4cce4370b6954c5d5d3885e35ca0 1313 849a8caebd59f5f727baef4941b0391d;8a4f005a0b9a7dd6f97a2c58acb34d9f SAMEA104035735 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090884/ERR2090884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090884/ERR2090884_2.fastq.gz 2605528 WGS ba57a200-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 58577830;62912747 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090884/ERR2090884_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/004/ERR2090884/ERR2090884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090884/22841_2#153.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090884/22841_2#153.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090884/ERR2090884_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/004/ERR2090884/ERR2090884_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090884/22841_2#153.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090884/22841_2#153.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86499066;4296 ERS1699628 ERX2147678 GENOMIC DN483654V:B8 325691000 2017-08-08 SC_RUN_22841_2#153 101 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090884/22841_2#153.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090884/22841_2#153.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#153 ERR2089808 SC_EXP_22114_6#20 463 285b785fe573d3b2837d26b79bc0d641;9c59a13af894226a6c590da9c89eece5 1313 dd4267004400d3cf2a526cfa43d07d91;c403ef5a7a80f166bbb9be66b9a390ce SAMEA104154994 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089808/ERR2089808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089808/ERR2089808_2.fastq.gz 2090414 WGS 87dd1be0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 47829931;47528745 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089808/ERR2089808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/008/ERR2089808/ERR2089808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089808/22114_6#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089808/22114_6#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089808/ERR2089808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/008/ERR2089808/ERR2089808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089808/22114_6#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089808/22114_6#20.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 66875942;3493 ERS1814012 ERX2146602 GENOMIC DN478829S:D3 261301750 2017-08-08 SC_RUN_22114_6#20 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089808/22114_6#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089808/22114_6#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#20 ERR1756465 SC_EXP_20925_3#80 416 0122a1b4091c934b06aab5480a10c27c;8de631d4811f4ccf7d2f188f15aa0b8e 1313 270dd504ec0ac45a6f3ac12714decbf9;b83b83162bdec9f3e8036ede5d1d108f SAMEA4036485 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756465/ERR1756465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756465/ERR1756465_2.fastq.gz 6157018 WGS 3e00f5f0-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 118364468;126538278 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756465/ERR1756465_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/005/ERR1756465/ERR1756465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756465/20925_3#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756465/20925_3#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/005/ERR1756465/ERR1756465_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/005/ERR1756465/ERR1756465_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756465/20925_3#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756465/20925_3#80.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 191117028;10166 ERS1207595 ERX1823485 GENOMIC DN461288B:A11 769627250 2016-12-13 SC_RUN_20925_3#80 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756465/20925_3#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756465/20925_3#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#80 ERR1430896 SC_EXP_19183_3#98 447 73c959396a98d5894a69aef7a846e022;f1654b9f9d480316b517ee8bf6cba996 1313 7fde0b74d42460704db3958ff5ece323;0bdde85400ffd888fb1ba7ab3a299043 SAMEA3448024 2016-06-01 ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430896/ERR1430896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430896/ERR1430896_2.fastq.gz 2443656 WGS GPS_GM_2282-sc-2296939 RANDOM 46706970;49385799 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430896/ERR1430896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR143/006/ERR1430896/ERR1430896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430896/19183_3#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430896/19183_3#98.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1430896/ERR1430896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR143/006/ERR1430896/ERR1430896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430896/19183_3#98.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR143/ERR1430896/19183_3#98.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 68643894;4091 ERS745598 ERX1501274 GENOMIC 15923244 305457000 2016-06-01 SC_RUN_19183_3#98 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430896/19183_3#98.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR143/ERR1430896/19183_3#98.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA640026 19183_3#98 ERR1288839 SC_EXP_18456_1#30 459 000f74fbe29b3b3486f81be8f85a2d54;a0900a877ed80808d85ac83bf1e30eec 1313 4c866c7ad223a98a585a55f1f2e823ed;46016339110d65ae39afe6bf17e4ac87 SAMEA3389229 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288839/ERR1288839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288839/ERR1288839_2.fastq.gz 2188283 WGS GPS_MW_149530-sc-2295702 RANDOM 50060119;49108532 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288839/ERR1288839_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/009/ERR1288839/ERR1288839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288839/18456_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288839/18456_1#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/009/ERR1288839/ERR1288839_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/009/ERR1288839/ERR1288839_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288839/18456_1#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288839/18456_1#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69951093;3584 ERS725332 ERX1360445 GENOMIC 14970343 271815256 2016-02-23 SC_RUN_18456_1#30 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288839/18456_1#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288839/18456_1#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#30 ERR1288927 SC_EXP_18456_1#118 459 5307fd32d15c0673d16536d6a3772bcb;0d734b8f63da88da2c3b9daab0047c87 1313 9962cb1731e13f5863b229cc78d106ff;cd6ab96cf1d2e089180dd36dd75c8beb SAMEA3389245 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288927/ERR1288927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288927/ERR1288927_2.fastq.gz 2592514 WGS GPS_MW_C11840-sc-2295718 RANDOM 61886637;57638742 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288927/ERR1288927_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/007/ERR1288927/ERR1288927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288927/18456_1#118.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288927/18456_1#118.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/007/ERR1288927/ERR1288927_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/007/ERR1288927/ERR1288927_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288927/18456_1#118.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288927/18456_1#118.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 85919729;4268 ERS725348 ERX1360533 GENOMIC 14970392 324064250 2016-02-23 SC_RUN_18456_1#118 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288927/18456_1#118.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288927/18456_1#118.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#118 ERR1288838 SC_EXP_18456_1#29 459 f4b49f450792632d6e76d8039327f317;d8d06f809f233d1c66094d47fafd2c87 1313 af814382e39723ac34c80fbcbe10b25a;62a53648b6f0f001f433ba40d71fb482 SAMEA3389227 2016-02-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/008/ERR1288838/ERR1288838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/008/ERR1288838/ERR1288838_2.fastq.gz 2115278 WGS GPS_MW_149529-sc-2295700 RANDOM 53465380;46835127 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/008/ERR1288838/ERR1288838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR128/008/ERR1288838/ERR1288838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288838/18456_1#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288838/18456_1#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/008/ERR1288838/ERR1288838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR128/008/ERR1288838/ERR1288838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288838/18456_1#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR128/ERR1288838/18456_1#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 70649123;3526 ERS725330 ERX1360444 GENOMIC 14970331 264409750 2016-02-23 SC_RUN_18456_1#29 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288838/18456_1#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR128/ERR1288838/18456_1#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA565846 18456_1#29 ERR1192004 SC_EXP_17794_7#182 458 243e0c8b05b485e12290872a45c236c7;853518ec09bb15cdd58d491b74bcecc0 1313 faff113b8b2968483b5b8a89ab5cfc4d;2de228d7cea6d7a9434398edee7358eb SAMEA3381555 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192004/ERR1192004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192004/ERR1192004_2.fastq.gz 2559252 WGS GPS_GM_2013-sc-2279433 RANDOM 50142548;54401608 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192004/ERR1192004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1192004/ERR1192004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192004/17794_7#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192004/17794_7#182.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192004/ERR1192004_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1192004/ERR1192004_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192004/17794_7#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1192004/17794_7#182.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 80776865;4217 ERS719814 ERX1265388 GENOMIC 14934922 319906500 2015-12-17 SC_RUN_17794_7#182 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192004/17794_7#182.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1192004/17794_7#182.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#182 ERR1191925 SC_EXP_17794_7#103 458 e26cbcbe62d74c0da6f5c617170845f3;ff4c500b1e40572aca2365c2318fbfdc 1313 57947786e59314ea9f4a7eff716332c4;f46e577500a91b3e12724bc2c074186e SAMEA3381420 2015-12-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191925/ERR1191925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191925/ERR1191925_2.fastq.gz 2401018 WGS GPS_GM_1932-sc-2279298 RANDOM 46446649;49304689 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191925/ERR1191925_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191925/ERR1191925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191925/17794_7#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191925/17794_7#103.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191925/ERR1191925_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191925/ERR1191925_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191925/17794_7#103.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191925/17794_7#103.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73823972;4038 ERS719679 ERX1265309 GENOMIC 14934912 300127250 2015-12-17 SC_RUN_17794_7#103 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191925/17794_7#103.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191925/17794_7#103.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA546289 17794_7#103 ERR1106746 SC_EXP_17428_8#123 478 deb0621c79e75171860e046549a4e177;c4148ee9bd26eec171edcb9050185d27 1313 56dbc59bc806ef1d9cb9d9a40bd986d9;5e9daf8e555d943bcd3a648ca244266a SAMEA3381337 2015-11-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106746/ERR1106746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106746/ERR1106746_2.fastq.gz 2389884 WGS GPS_GM_1849-sc-2279159 RANDOM 41478208;43125304 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106746/ERR1106746_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/006/ERR1106746/ERR1106746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106746/17428_8#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106746/17428_8#123.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/006/ERR1106746/ERR1106746_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/006/ERR1106746/ERR1106746_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106746/17428_8#123.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR110/ERR1106746/17428_8#123.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 64707453;4066 ERS719596 ERX1186277 GENOMIC 14702556 298735500 2015-11-03 SC_RUN_17428_8#123 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106746/17428_8#123.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR110/ERR1106746/17428_8#123.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA528902 17428_8#123 ERR997643 SC_EXP_16399_7#22 213 4509ff658e11062ce7f7290c606d5f48;5cc79d205d4424ce1cdea1b73594be0a 1313 b69ce0d1eb5ddb107d344317fe41b82c;0a48813c5082f454310ab1ecb9267486 SAMEA3309687 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997643/ERR997643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997643/ERR997643_2.fastq.gz 5408298 WGS GPS_GM_1705-sc-2206490 RANDOM 184675117;192810262 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997643/ERR997643_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997643/ERR997643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997643/16399_7#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997643/16399_7#22.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997643/ERR997643_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997643/ERR997643_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997643/16399_7#22.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997643/16399_7#22.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307527535;8725 ERS686149 ERX1076679 GENOMIC 13843411 540829800 2015-09-04 SC_RUN_16399_7#22 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997643/16399_7#22.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997643/16399_7#22.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#22 ERR997635 SC_EXP_16399_7#14 213 803c08ce581f382bf70b199687a9ab85;6a1df764dbf4d18714df01eeb63e3ac0 1313 df30d5cb271dc43ee5e65f612b900704;26c74e59d229a2c40b807064fd716adb SAMEA3309678 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997635/ERR997635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997635/ERR997635_2.fastq.gz 5644016 WGS GPS_GM_1696-sc-2206481 RANDOM 192477068;201128792 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997635/ERR997635_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997635/ERR997635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997635/16399_7#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997635/16399_7#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997635/ERR997635_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997635/ERR997635_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997635/16399_7#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997635/16399_7#14.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322098297;9127 ERS686140 ERX1076671 GENOMIC 13843410 564401600 2015-09-04 SC_RUN_16399_7#14 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997635/16399_7#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997635/16399_7#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_7#14 ERR997615 SC_EXP_16399_6#74 220 0dcaebd6b5d328a77178b86fc9b83750;6dc773fd5ac1ab1ccefe26bf6dd86e12 1313 e9c4a79084de856b883f198afba1bb54;d972fc6e06bc2178e546c45aa280e1b3 SAMEA3309657 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997615/ERR997615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997615/ERR997615_2.fastq.gz 5880502 WGS GPS_GM_1676-sc-2206460 RANDOM 196924341;204279429 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997615/ERR997615_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997615/ERR997615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997615/16399_6#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997615/16399_6#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997615/ERR997615_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997615/ERR997615_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997615/16399_6#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997615/16399_6#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 330175040;9449 ERS686119 ERX1076651 GENOMIC 13835386 588050200 2015-09-04 SC_RUN_16399_6#74 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997615/16399_6#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997615/16399_6#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#74 ERR997561 SC_EXP_16399_6#20 220 b8ac1ffdb471564df698622362e63fe3;469d20c93f88fb43e6151d9ba5b7ddc3 1313 a4a8911b238c6a8f8b3f83cc149dd3a3;501b93221bde4bdc39b19e2e03f24dc7 SAMEA3309598 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997561/ERR997561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997561/ERR997561_2.fastq.gz 5758454 WGS GPS_GM_1617-sc-2206400 RANDOM 193945650;201272542 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997561/ERR997561_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997561/ERR997561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997561/16399_6#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997561/16399_6#20.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997561/ERR997561_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997561/ERR997561_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997561/16399_6#20.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997561/16399_6#20.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 323236456;9303 ERS686060 ERX1076597 GENOMIC 13835403 575845400 2015-09-04 SC_RUN_16399_6#20 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997561/16399_6#20.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997561/16399_6#20.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#20 ERR997547 SC_EXP_16399_6#6 220 ec7cdfcddfe5d47a04cca4ee41fdb542;bca82fb936a2830d1bbbd230999a0318 1313 706b46e1e2937a766777729cfe53ff50;5a31cea2c577c233b939e816876a7454 SAMEA3309583 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997547/ERR997547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997547/ERR997547_2.fastq.gz 6777930 WGS GPS_GM_1602-sc-2206385 RANDOM 227838807;236529409 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997547/ERR997547_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997547/ERR997547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997547/16399_6#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997547/16399_6#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997547/ERR997547_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997547/ERR997547_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997547/16399_6#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997547/16399_6#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 380789979;10913 ERS686045 ERX1076583 GENOMIC 13835425 677793000 2015-09-04 SC_RUN_16399_6#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997547/16399_6#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997547/16399_6#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#6 ERR997484 SC_EXP_16399_5#23 228 471f9c554e2d853c74e50bc30d524d2b;d620e902b5f44d7d4f5c0884d23ca0f8 1313 e4a240b735f7d54ee1a281d2d9306eea;2dde4f2304162abb8e01f142cd2ac6d2 SAMEA3309562 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997484/ERR997484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997484/ERR997484_2.fastq.gz 4365062 WGS GPS_GM_1581-sc-2206364 RANDOM 138207397;142900999 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997484/ERR997484_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997484/ERR997484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997484/16399_5#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997484/16399_5#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997484/ERR997484_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997484/ERR997484_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997484/16399_5#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997484/16399_5#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226286193;7001 ERS686024 ERX1076520 GENOMIC 13835538 436506200 2015-09-04 SC_RUN_16399_5#23 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997484/16399_5#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997484/16399_5#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#23 ERR997490 SC_EXP_16399_5#29 228 821ca9fe7c7307d76f3b2280ba587af0;8a4bab5a058464f97a3706f1fecbb844 1313 523ef6b86819b02b223cf21e7b57b89d;0c51852201277f783d448f7ec1b83cb4 SAMEA3309647 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997490/ERR997490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997490/ERR997490_2.fastq.gz 4832812 WGS GPS_GM_1666-sc-2206450 RANDOM 152991827;158943537 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997490/ERR997490_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997490/ERR997490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997490/16399_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997490/16399_5#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997490/ERR997490_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997490/ERR997490_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997490/16399_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997490/16399_5#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 251446760;7727 ERS686109 ERX1076526 GENOMIC 13835515 483281200 2015-09-04 SC_RUN_16399_5#29 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997490/16399_5#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997490/16399_5#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_5#29 ERR984282 SC_EXP_16453_2#45 218 90fd2d6480c01bea25a58e16afaf3e9f;49b50f42a9507bcbb460a243b03f4aad 1313 c38a3660fbfd2059d664115df0a92acd;df965627992a65f320db96e19f70d029 SAMEA3309799 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984282/ERR984282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984282/ERR984282_2.fastq.gz 5631784 WGS GPS_GM_1817-sc-2206614 RANDOM 96754189;102213720 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984282/ERR984282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984282/ERR984282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984282/16453_2#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984282/16453_2#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984282/ERR984282_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984282/ERR984282_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984282/16453_2#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984282/16453_2#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 167050823;9366 ERS686261 ERX1065503 GENOMIC 13843305 703973000 2015-08-18 SC_RUN_16453_2#45 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984282/16453_2#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984282/16453_2#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#45 ERR984269 SC_EXP_16453_2#32 218 7aedfa346046ac4feab96bedcdfd907b;37784ed2e1b671b6c0624557cfff8425 1313 484d67427f44eaa9be4bbcd0bbcdb619;00cd5ad76cebc03989062258f180f962 SAMEA3309786 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984269/ERR984269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984269/ERR984269_2.fastq.gz 5833560 WGS GPS_GM_1804-sc-2206600 RANDOM 99802357;105085040 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984269/ERR984269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984269/ERR984269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984269/16453_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984269/16453_2#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984269/ERR984269_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984269/ERR984269_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984269/16453_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984269/16453_2#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 171939077;9635 ERS686248 ERX1065490 GENOMIC 13843339 729195000 2015-08-18 SC_RUN_16453_2#32 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984269/16453_2#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984269/16453_2#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#32 ERR984247 SC_EXP_16453_2#10 218 575b5de49b76101e7d633d1f8968dcbd;21d87f219d5f04b084378030e9bc2a09 1313 a5406a8daad5dc6b622bf82847383473;2050e6923450298358577e7ec57924b1 SAMEA3309764 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984247/ERR984247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984247/ERR984247_2.fastq.gz 6183846 WGS GPS_GM_1782-sc-2206578 RANDOM 105370194;111733691 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984247/ERR984247_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984247/ERR984247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984247/16453_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984247/16453_2#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984247/ERR984247_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984247/ERR984247_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984247/16453_2#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984247/16453_2#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 182552708;10244 ERS686226 ERX1065468 GENOMIC 13843265 772980750 2015-08-18 SC_RUN_16453_2#10 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984247/16453_2#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984247/16453_2#10.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#10 ERR984270 SC_EXP_16453_2#33 218 61398d1f071db2c5504ee752591165e0;e33199ad437f0db87d5c0ef0eb0f6ee4 1313 938870f2b3f769ca321fa11229e5bb3d;e9276a032bbc428f460fe6706d14558c SAMEA3309787 2015-08-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984270/ERR984270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984270/ERR984270_2.fastq.gz 5647278 WGS GPS_GM_1805-sc-2206601 RANDOM 96209144;102298931 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984270/ERR984270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR984/ERR984270/ERR984270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984270/16453_2#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984270/16453_2#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984270/ERR984270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR984/ERR984270/ERR984270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984270/16453_2#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR984/ERR984270/16453_2#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 166908667;9335 ERS686249 ERX1065491 GENOMIC 13843256 705909750 2015-08-18 SC_RUN_16453_2#33 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984270/16453_2#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR984/ERR984270/16453_2#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA466411 16453_2#33 ERR980331 SC_EXP_16288_8#58 202 afc9a590ded40730c527d82a6f61afaf;673cf5227851276aa3429dc2518371d3 1313 20b9e75c510226e73e0b986e4b24b9b1;dc0c7f7d0839f429cdb9c58a875e7666 SAMEA3232824 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980331/ERR980331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980331/ERR980331_2.fastq.gz 4600118 WGS GPS_NP_3596-sc-2205736 RANDOM 157943521;153820631 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980331/ERR980331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980331/ERR980331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980331/16288_8#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980331/16288_8#58.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980331/ERR980331_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980331/ERR980331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980331/16288_8#58.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980331/16288_8#58.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 252110962;7336 ERS654035 ERX1057203 GENOMIC 13301768 460011800 2015-08-12 SC_RUN_16288_8#58 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980331/16288_8#58.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980331/16288_8#58.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#58 ERR980306 SC_EXP_16288_8#33 202 bb73135f4f14f1fe0a85d404e03e0476;0604c51e97d846f402ed85b76543f42e 1313 19a3e8d1890788777988ad09158f92af;1ee23e4dc8a88e85d6d539854d367791 SAMEA3232799 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980306/ERR980306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980306/ERR980306_2.fastq.gz 5312442 WGS GPS_NP_1337-sc-2205711 RANDOM 179728341;174801211 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980306/ERR980306_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980306/ERR980306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980306/16288_8#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980306/16288_8#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980306/ERR980306_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980306/ERR980306_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980306/16288_8#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980306/16288_8#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286801766;8564 ERS654010 ERX1057178 GENOMIC 13301753 531244200 2015-08-12 SC_RUN_16288_8#33 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980306/16288_8#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980306/16288_8#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#33 ERR980270 SC_EXP_16288_7#80 201 09640bec5db15bd759296bb642317e26;90a2a0e94e2c8c071612b3db9583df3b 1313 96660147c8ccbad6b039dc159e15421e;b19a95142d17cb144bd7ac5d3343387e SAMEA3232763 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980270/ERR980270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980270/ERR980270_2.fastq.gz 5215582 WGS GPS_NP_1239-sc-2205675 RANDOM 174341689;170644356 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980270/ERR980270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980270/ERR980270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980270/16288_7#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980270/16288_7#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980270/ERR980270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980270/ERR980270_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980270/16288_7#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980270/16288_7#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 279618440;8335 ERS653974 ERX1057142 GENOMIC 13304096 521558200 2015-08-12 SC_RUN_16288_7#80 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980270/16288_7#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980270/16288_7#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#80 ERR913401 SC_EXP_15873_5#5 208 06ecb65a5466874f309a59521857d127;5383a4d4293780bd8cc33c7cee5ea498 1313 4f0220fcaa035efe2861f6d37b5c2ebc;02b7be0a0482af93818bca3f796db3ec SAMEA3233089 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913401/ERR913401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913401/ERR913401_2.fastq.gz 6246240 WGS GPS_GM_1233-sc-2205845 RANDOM 194077905;203522316 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913401/ERR913401_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913401/ERR913401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913401/15873_5#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913401/15873_5#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913401/ERR913401_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913401/ERR913401_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913401/15873_5#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913401/15873_5#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325951569;10090 ERS654282 ERX992525 GENOMIC 13308424 624624000 2015-06-17 SC_RUN_15873_5#5 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913401/15873_5#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913401/15873_5#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_5#5 ERR913283 SC_EXP_15873_3#49 216 e3f2b8e33d3724336c837f9c6c815d96;f7839d577eb0a038645b1c09355e769c 1313 a99815ae47b36d186fd45a607e359359;fc79b2a760c39c57d9478dadacdaa1ac SAMEA3233240 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913283/ERR913283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913283/ERR913283_2.fastq.gz 6376392 WGS GPS_GM_1364-sc-2205996 RANDOM 198802606;207281563 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913283/ERR913283_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913283/ERR913283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913283/15873_3#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913283/15873_3#49.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913283/ERR913283_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913283/ERR913283_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913283/15873_3#49.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913283/15873_3#49.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 328882723;10200 ERS654433 ERX992407 GENOMIC 13308146 637639200 2015-06-17 SC_RUN_15873_3#49 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913283/15873_3#49.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913283/15873_3#49.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#49 ERR980272 SC_EXP_16288_7#82 201 d3afd1ba03ed98b54085b2af9206e1d7;274bb6143ba41f2968c3623fd64f31be 1313 9e7afa76f33fe3356eb9361a3c9568b3;f3a66a22478e832c120cdd8b77788d24 SAMEA3232765 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980272/ERR980272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980272/ERR980272_2.fastq.gz 5657964 WGS GPS_NP_1248-sc-2205677 RANDOM 191418991;192102652 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980272/ERR980272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980272/ERR980272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980272/16288_7#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980272/16288_7#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980272/ERR980272_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980272/ERR980272_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980272/16288_7#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980272/16288_7#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313741010;9085 ERS653976 ERX1057144 GENOMIC 13304025 565796400 2015-08-12 SC_RUN_16288_7#82 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980272/16288_7#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980272/16288_7#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_7#82 ERR913263 SC_EXP_15873_3#29 216 489bf3733871ba0419eb59b94be1c4b4;79c79355fb34c9f755dc11f36b5d1b34 1313 08929ab710c979c22ad559f572be6ed0;fa1d4fa8e95f91d774775644179c1042 SAMEA3233217 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913263/ERR913263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913263/ERR913263_2.fastq.gz 5294820 WGS GPS_GM_1341-sc-2205973 RANDOM 166483062;174445715 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913263/ERR913263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913263/ERR913263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913263/15873_3#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913263/15873_3#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913263/ERR913263_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913263/ERR913263_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913263/15873_3#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913263/15873_3#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 275032427;8417 ERS654410 ERX992387 GENOMIC 13308191 529482000 2015-06-17 SC_RUN_15873_3#29 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913263/15873_3#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913263/15873_3#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_3#29 ERR730244 SC_EXP_14520_5#11 224 3fcf602d5af5e23e70feddf76d7c8412;d4714e2a28e6fb718416b14bdb03acc5 1313 383166dd70acd2507ca4afcacf299bcf;9c2597d03db13d8cd5c52561de7b9005 SAMEA2696389 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730244/ERR730244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730244/ERR730244_2.fastq.gz 5342474 WGS GPS_GM_0624-sc-2021844 RANDOM 195467617;199773369 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730244/ERR730244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730244/ERR730244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730244/14520_5#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730244/14520_5#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730244/ERR730244_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730244/ERR730244_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730244/14520_5#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730244/14520_5#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 326376737;8809 ERS524968 ERX674190 GENOMIC 11982865 534247400 2015-01-14 SC_RUN_14520_5#11 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730244/14520_5#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730244/14520_5#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#11 ERR751017 SC_EXP_14723_4#16 213 490d5495ed9d414f34de16dac59db780;437354bb02fec497732f67e3f6e66155 1313 48b128cb2da3ae56016d2370bf9bc00b;82030d4e9561b35c5c669f396faf78b8 SAMEA2797279 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751017/ERR751017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751017/ERR751017_2.fastq.gz 6202172 WGS GPS_US_PATH5479-sc-2139308 RANDOM 228276222;231969921 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751017/ERR751017_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751017/ERR751017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751017/14723_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751017/14723_4#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751017/ERR751017_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751017/ERR751017_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751017/14723_4#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751017/14723_4#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 383273959;10040 ERS558890 ERX694699 GENOMIC 12133869 620217200 2015-02-03 SC_RUN_14723_4#16 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751017/14723_4#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751017/14723_4#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_4#16 ERR730333 SC_EXP_14520_6#5 215 6c5e8a2a7769e7d0b85ba7f596a8821b;bd1fa7366e710bc49c38458f7b1e6527 1313 fb63a52d5beb41f90e550ddf400548d2;2204a141aecb5d7853b058c6bac3e53a SAMEA2696409 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730333/ERR730333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730333/ERR730333_2.fastq.gz 5579594 WGS GPS_GM_0713-sc-2021864 RANDOM 202006702;206000322 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730333/ERR730333_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730333/ERR730333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730333/14520_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730333/14520_6#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730333/ERR730333_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730333/ERR730333_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730333/14520_6#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730333/14520_6#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 339690145;9243 ERS524988 ERX674279 GENOMIC 11983335 557959400 2015-01-14 SC_RUN_14520_6#5 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730333/14520_6#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730333/14520_6#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#5 ERR773921 SC_EXP_14913_3#12 225 32c217717d44779e0fb0f05680a67c0d;ff17b950c17961283e4f8ffb6c144dfe 1313 e362dd7c63d914b52112f44684d22e13;de1316730c79a8bff0fe3b2bdc0b75b0 SAMEA2813937 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773921/ERR773921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773921/ERR773921_2.fastq.gz 4481032 WGS GPS_ZA_2149-sc-2022421 RANDOM 152752749;159174584 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773921/ERR773921_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR773/ERR773921/ERR773921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773921/14913_3#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773921/14913_3#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773921/ERR773921_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR773/ERR773921/ERR773921_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773921/14913_3#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR773/ERR773921/14913_3#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 255138097;7132 ERS566305 ERX716800 GENOMIC 12345947 448103200 2015-03-03 SC_RUN_14913_3#12 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773921/14913_3#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR773/ERR773921/14913_3#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_3#12 ERR870144 SC_EXP_15531_5#47 214 56ba426716f9f7557beaa0dd54a39e65;d1c7377eec96c35efe013e659b4c46d7 1313 39f5175ded9cb3fc7565b2a4827bc229;4b728aaf3fb38d18ca4d743da91a8ac9 SAMEA3172871 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870144/ERR870144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870144/ERR870144_2.fastq.gz 4289290 WGS GPS_GM_1027-sc-2190428 RANDOM 165422937;157102109 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870144/ERR870144_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870144/ERR870144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870144/15531_5#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870144/15531_5#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870144/ERR870144_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870144/ERR870144_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870144/15531_5#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870144/15531_5#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 267487725;7001 ERS627114 ERX949745 GENOMIC 12870968 428929000 2015-05-06 SC_RUN_15531_5#47 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870144/15531_5#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870144/15531_5#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_5#47 ERR730331 SC_EXP_14520_6#3 215 4b3c21a092d92b4ebadf543d7bc0f746;3dd8797cb986190cc5e97966ee321294 1313 359a494480fb4804978239457ffdc0ac;a76fb6f671cd5801fb251709a4dae78e SAMEA2696405 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730331/ERR730331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730331/ERR730331_2.fastq.gz 5556794 WGS GPS_GM_0711-sc-2021860 RANDOM 202831698;207819784 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730331/ERR730331_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730331/ERR730331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730331/14520_6#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730331/14520_6#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730331/ERR730331_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730331/ERR730331_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730331/14520_6#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730331/14520_6#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 340217522;9181 ERS524984 ERX674277 GENOMIC 11983311 555679400 2015-01-14 SC_RUN_14520_6#3 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730331/14520_6#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730331/14520_6#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_6#3 ERR730296 SC_EXP_14520_5#63 224 25742c2a13e5462e7eb724ed192795ae;e8e1290aca6c48246610f278bbc9849d 1313 c82edefd4e85c9c25ab338838d65e4ee;e6c793b0d477e313e92e0e9340757e2b SAMEA2696477 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730296/ERR730296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730296/ERR730296_2.fastq.gz 4927308 WGS GPS_GM_0676-sc-2021932 RANDOM 180175975;183888954 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730296/ERR730296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730296/ERR730296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730296/14520_5#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730296/14520_5#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730296/ERR730296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730296/ERR730296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730296/14520_5#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730296/14520_5#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 301151174;8119 ERS525056 ERX674242 GENOMIC 11982919 492730800 2015-01-14 SC_RUN_14520_5#63 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730296/14520_5#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730296/14520_5#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#63 ERR730284 SC_EXP_14520_5#51 224 392a3c3128df062b3d598d30438fc9ff;f75d473ed3efb22c830badd23d7935a9 1313 ad520407423da7ab09ce6702f4654d23;029f52122746e041eefdc8982d104bc6 SAMEA2696454 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730284/ERR730284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730284/ERR730284_2.fastq.gz 5193180 WGS GPS_GM_0664-sc-2021909 RANDOM 194292616;197987001 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730284/ERR730284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730284/ERR730284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730284/14520_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730284/14520_5#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730284/ERR730284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730284/ERR730284_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730284/14520_5#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730284/14520_5#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 322297601;8369 ERS525033 ERX674230 GENOMIC 11982870 519318000 2015-01-14 SC_RUN_14520_5#51 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730284/14520_5#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730284/14520_5#51.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#51 ERR714172 SC_EXP_14410_4#70 220 8533586b18a63fc7a5a09ad78916dc23;f6106b77df7191a67b1e5ef493b29abd 1313 850bc9487bff1b020c1924c07254f834;b9119788700ca29aff2ce7b1e4fea25a SAMEA2627478 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714172/ERR714172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714172/ERR714172_2.fastq.gz 5473342 WGS GPS_GM_0333-sc-2003419 RANDOM 190932347;192010647 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714172/ERR714172_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714172/ERR714172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714172/14410_4#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714172/14410_4#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714172/ERR714172_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714172/ERR714172_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714172/14410_4#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714172/14410_4#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 313951691;9025 ERS497377 ERX658094 GENOMIC 11858311 547334200 2015-01-08 SC_RUN_14410_4#70 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714172/14410_4#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714172/14410_4#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_4#70 ERR730260 SC_EXP_14520_5#27 224 8c7fe55bfa91bc95ad11e6cba6f762bd;87f74671194a8588f6a4b0ead0306b46 1313 e1baf7c79c9edbb148aea57096513d84;5097527aeb94fe99b76c4c4625a911f6 SAMEA2696410 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730260/ERR730260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730260/ERR730260_2.fastq.gz 5287066 WGS GPS_GM_0640-sc-2021865 RANDOM 193665165;197635760 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730260/ERR730260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730260/ERR730260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730260/14520_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730260/14520_5#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730260/ERR730260_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730260/ERR730260_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730260/14520_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730260/14520_5#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 323126198;8712 ERS524989 ERX674206 GENOMIC 11982867 528706600 2015-01-14 SC_RUN_14520_5#27 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730260/14520_5#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730260/14520_5#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14520_5#27 ERR068297 SC_EXP_7004_3#54 245 ba1200eae33267b51b05cc33292a84c2 1313 7fea96ab9f7ea4af5aa5763056060e56;39253e470b10fda41108d87f4aca114f SAMEA1033659 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068297/ERR068297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068297/ERR068297_2.fastq.gz 719091 WGS C14257-sc-2011-08-23T15:08:40Z-1261874 RANDOM 46092149;42806754 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068297/ERR068297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068297/ERR068297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068297/7004_3#54.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068297/ERR068297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068297/ERR068297_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068297/7004_3#54.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 111719216 ERS050455 ERX046160 GENOMIC 3723409 107863650 2012-01-16 SC_RUN_7004_3#54 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068297/7004_3#54.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA080989 7004_3#54 ERR066226 SC_EXP_6983_3#51 241 f62cd5ac520229ada8d83337a04c1a61 1313 774c51c3bc268cb48ef6833f5d62bafb;3faffb499960c1010e5420698aae874d SAMEA1026021 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066226/ERR066226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066226/ERR066226_2.fastq.gz 2443094 WGS SMRU2259-sc-2011-01-27-1062472 RANDOM 171304003;172574391 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066226/ERR066226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066226/ERR066226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066226/6983_3#51.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066226/ERR066226_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066226/ERR066226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066226/6983_3#51.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2397 ERP000487 428711663 ERS021768 ERX044089 GENOMIC 3594879 366464100 2012-01-10 SC_RUN_6983_3#51 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066226/6983_3#51.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-20 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR068251 SC_EXP_7004_3#8 245 c22bf3296d4d766be784ecbd6d9fc13c 1313 957589f94a1b2a157b71cbe002a429a5;dda66ab7de0bf7acb07081aec922c4a6 SAMEA1033573 2012-01-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068251/ERR068251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068251/ERR068251_2.fastq.gz 1472072 WGS B10199-sc-2011-08-23T15:07:58Z-1261828 RANDOM 92713574;85378290 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068251/ERR068251_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR068/ERR068251/ERR068251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068251/7004_3#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068251/ERR068251_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR068/ERR068251/ERR068251_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR068/ERR068251/7004_3#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 226226635 ERS050409 ERX046114 GENOMIC 3723363 220810800 2012-01-16 SC_RUN_7004_3#8 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR068/ERR068251/7004_3#8.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA080989 7004_3#8 ERR066350 SC_EXP_6983_8#79 237 44c158f21b2ce7b5ebf8b306d435b8eb 1313 b9f5950285cea85d24c3e757541e2220;dcf2460be1a5115c14d9f2d3004bc45e SAMEA1028790 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066350/ERR066350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066350/ERR066350_2.fastq.gz 3634998 WGS SMRU2383-sc-2011-01-27-1062596 RANDOM 258081102;261464132 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066350/ERR066350_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR066/ERR066350/ERR066350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066350/6983_8#79.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066350/ERR066350_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR066/ERR066350/ERR066350_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR066/ERR066350/6983_8#79.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 651313971 ERS021892 ERX044213 GENOMIC 3596161 545249700 2012-03-19 SC_RUN_6983_8#79 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR066/ERR066350/6983_8#79.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079703 Streptococcus pneumoniae Streptococcus pneumoniae ERR086006 SC_EXP_7068_2#54 241 d7a93628ce95e683cff3a7f78bba1797 1313 18097ee21948e5e0134b384722a20601;f8bff6e8cf7f017959ece9c1823031e7 SAMEA1033659 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086006/ERR086006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086006/ERR086006_2.fastq.gz 1131055 WGS C14257-sc-2011-08-23T15:08:40Z-1261874 RANDOM 76719547;75350706 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086006/ERR086006_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR086/ERR086006/ERR086006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR086/ERR086006/7068_2#54.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR086/ERR086006/ERR086006_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR086/ERR086006/ERR086006_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR086/ERR086006/7068_2#54.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 194212002 ERS050455 ERX063772 GENOMIC 3723409 169658250 2012-02-07 SC_RUN_7068_2#54 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR086/ERR086006/7068_2#54.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA087412 7004_3#54 ERR085960 SC_EXP_7068_2#8 241 9b41c1f77338bd9ba677c1db0c153e76 1313 f59f6eab170508ddb53e5b764ae31e44;e6a102c8dc748b221657d5b0afb11c5e SAMEA1033573 2012-02-07 ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085960/ERR085960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085960/ERR085960_2.fastq.gz 2355825 WGS B10199-sc-2011-08-23T15:07:58Z-1261828 RANDOM 158381855;154997767 BAM Streptococcus pneumoniae Streptococcus_pneumoniae_samples_from_Malawi ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085960/ERR085960_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR085/ERR085960/ERR085960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR085/ERR085960/7068_2#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR085/ERR085960/ERR085960_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR085/ERR085960/ERR085960_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR085/ERR085960/7068_2#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2656 ERP000872 398086569 ERS050409 ERX063726 GENOMIC 3723363 353373750 2012-02-07 SC_RUN_7068_2#8 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR085/ERR085960/7068_2#8.bam Streptococcus_pneumoniae_samples_from_Malawi-sc-2011-08-23T11:50:55Z-1945 Illumina HiSeq 2000 paired end sequencing ERA087412 7004_3#8 ERR2305424 SC_EXP_22709_8#337 450 4cf6f8724b7dceb4aaf1f6c7ddf41545;796479758b59ed8208d3d19f85a1e67d 1313 18e755a4de27661c025e821c910c9acc;8603d3b358f4640264cae58db49a509f SAMEA104034566 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305424/ERR2305424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305424/ERR2305424_2.fastq.gz 2247138 WGS df62bcf0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 54818795;79896719 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305424/ERR2305424_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/004/ERR2305424/ERR2305424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305424/22709_8#337.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305424/22709_8#337.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305424/ERR2305424_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/004/ERR2305424/ERR2305424_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305424/22709_8#337.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305424/22709_8#337.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 95517383;3783 ERS1698459 ERX2356734 GENOMIC DN477148T:A8 339317838 2018-02-16 SC_RUN_22709_8#337 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305424/22709_8#337.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305424/22709_8#337.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808515 ERR2305057 SC_EXP_22695_3#16 425 0588fee1af513bfa5b401afd37a607bd;66fcd5addf8535b6b3508caa595ad03c 1313 75e33c872ad29b3fe7b010a11a4777d4;6741e842d9955187168dc46a06c6e801 SAMEA104034605 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305057/ERR2305057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305057/ERR2305057_2.fastq.gz 2642768 WGS e55087a0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 69144851;93014211 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305057/ERR2305057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305057/ERR2305057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305057/22695_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305057/22695_3#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305057/ERR2305057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305057/ERR2305057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305057/22695_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305057/22695_3#16.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 116206146;4437 ERS1698498 ERX2356367 GENOMIC DN477140L:H2 399057968 2018-02-16 SC_RUN_22695_3#16 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305057/22695_3#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305057/22695_3#16.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808570 ERR2305343 SC_EXP_22695_3#302 437 b18d0cad11891e661e920fb89e5223b9;2e6d520a1b4b6d66d039b9d3f899ddf6 1313 07225ed2c3782f2597ecce6a106b7821;d9f1a822975dcc51ce3ada8999216a55 SAMEA104035076 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305343/ERR2305343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305343/ERR2305343_2.fastq.gz 2562262 WGS 0941e280-13c4-11e7-942b-3c4a9275d6c8 RANDOM 67015058;91010213 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305343/ERR2305343_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/003/ERR2305343/ERR2305343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305343/22695_3#302.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305343/22695_3#302.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305343/ERR2305343_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/003/ERR2305343/ERR2305343_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305343/22695_3#302.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305343/22695_3#302.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 112353254;4301 ERS1698969 ERX2356653 GENOMIC DN477147S:A3 386901562 2018-02-16 SC_RUN_22695_3#302 96 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305343/22695_3#302.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305343/22695_3#302.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6809051 ERR2305067 SC_EXP_22695_3#26 426 a1f10ce7fe5931903439bf852d472e9f;e67876f0c9d6d0bda9ac46b8cd24b3f2 1313 a363ec807bd789ecf8f2e5cda40aad7f;cb70465901fd322e2e5f6334f9f335ae SAMEA104034615 2018-02-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305067/ERR2305067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305067/ERR2305067_2.fastq.gz 2325346 WGS e5a3fed0-13c3-11e7-942b-3c4a9275d6c8 RANDOM 63116267;86062036 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305067/ERR2305067_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR230/007/ERR2305067/ERR2305067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305067/22695_3#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305067/22695_3#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305067/ERR2305067_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR230/007/ERR2305067/ERR2305067_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305067/22695_3#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR230/ERR2305067/22695_3#26.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106645699;3887 ERS1698508 ERX2356377 GENOMIC DN477140L:B4 351127246 2018-02-16 SC_RUN_22695_3#26 97 fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305067/22695_3#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR230/ERR2305067/22695_3#26.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA1211682 4484STDY6808580 ERR1947722 SC_EXP_21946_6#202 459 3e6a2b8385040886158108a4ee769f00;6684ad9241995c08f516cd0680c4e041 1313 4a120b0986f00955f4069f45f20dffea;f707048b548fbd2ad0ad17b810f8d5be SAMEA4561017 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947722/ERR1947722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947722/ERR1947722_2.fastq.gz 2459604 WGS 026cc530-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 62812924;87486869 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947722/ERR1947722_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/002/ERR1947722/ERR1947722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947722/21946_6#202.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947722/21946_6#202.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947722/ERR1947722_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/002/ERR1947722/ERR1947722_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947722/21946_6#202.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947722/21946_6#202.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 106898962;4105 ERS1460196 ERX2013509 GENOMIC 18471389 371400204 2017-04-25 SC_RUN_21946_6#202 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947722/21946_6#202.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947722/21946_6#202.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR600132 SC_EXP_13414_1#79 292 fd0e8ba689dfaa68b800a94ec62058f4;cd59133fe437c7f7f8c311cfcb4891df 1313 3e9f86ececd3417b804b317028ad325d;2496cdc69c341547f05828b2cd3db867 SAMEA2521535 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600132/ERR600132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600132/ERR600132_2.fastq.gz 6659620 WGS 2013212244-sc-1946826 RANDOM 218658965;225599800 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600132/ERR600132_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600132/ERR600132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600132/13414_1#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600132/13414_1#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600132/ERR600132_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600132/ERR600132_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600132/13414_1#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600132/13414_1#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 367256992;11059 ERS455075 ERX556961 GENOMIC 10524190 665962000 2014-09-16 SC_RUN_13414_1#79 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600132/13414_1#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600132/13414_1#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#79 ERR596413 SC_EXP_13353_7#67 259 2290d86a35f0664868e07deece68a0cf;29a626b952a246399411a085d780c913 1313 a2c741cb5bf1bbaef5c66185b5136175;a915f8e17f90f1d72eadb9a6c3a50df0 SAMEA2521808 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596413/ERR596413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596413/ERR596413_2.fastq.gz 8278064 WGS 2012219771-sc-1947102 RANDOM 256804759;275659278 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596413/ERR596413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596413/ERR596413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596413/13353_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596413/13353_7#67.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596413/ERR596413_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596413/ERR596413_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596413/13353_7#67.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596413/13353_7#67.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 442092484;13735 ERS455348 ERX553376 GENOMIC 10552866 827806400 2014-09-09 SC_RUN_13353_7#67 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596413/13353_7#67.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596413/13353_7#67.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#67 ERR600100 SC_EXP_13414_1#27 292 03cee8e8ae362caa58641a1ce565375c;05add28f97ba17e544569b703da5cdf3 1313 0cf2969dc538af03ffae9bbd1002346f;0809a6c7be5284c9ebed25c37adeb483 SAMEA2521477 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600100/ERR600100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600100/ERR600100_2.fastq.gz 6530714 WGS 2010200297-sc-1946774 RANDOM 222457162;228699887 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600100/ERR600100_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600100/ERR600100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600100/13414_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600100/13414_1#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600100/ERR600100_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600100/ERR600100_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600100/13414_1#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600100/13414_1#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 375873979;10674 ERS455017 ERX556929 GENOMIC 10524136 653071400 2014-09-16 SC_RUN_13414_1#27 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600100/13414_1#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600100/13414_1#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#27 ERR596399 SC_EXP_13353_7#45 259 cf935a2ff30347cef968e009975078ab;4a7b98b0bcbf54a713c437fc07846ce0 1313 265b4efa86a6fc9304b26769c1112767;8e4bbca9a3238c2b7cfbea8a9eca8086 SAMEA2521786 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596399/ERR596399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596399/ERR596399_2.fastq.gz 9375120 WGS 2013207630-sc-1947080 RANDOM 306315972;317652186 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596399/ERR596399_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596399/ERR596399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596399/13353_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596399/13353_7#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596399/ERR596399_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596399/ERR596399_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596399/13353_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596399/13353_7#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 517899325;14658 ERS455326 ERX553362 GENOMIC 10552887 937512000 2014-09-09 SC_RUN_13353_7#45 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596399/13353_7#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596399/13353_7#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#45 ERR568445 SC_EXP_12837_1#13 237 0d24700fcac3ced1fe26f70a193aa73c;75d5a5498b2f71f32bf65d7e03e58d85 1313 5653799c7e0aa80a46c80625521f23a0;e5720d04ef2d4bd4e831fe3a61b4ba39 SAMEA2434425 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568445/ERR568445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568445/ERR568445_2.fastq.gz 5421338 WGS SA_GPS_SP320-sc-1895488 RANDOM 188457626;190930913 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568445/ERR568445_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568445/ERR568445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568445/12837_1#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568445/12837_1#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568445/ERR568445_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568445/ERR568445_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568445/12837_1#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568445/12837_1#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 314757515;8830 ERS428602 ERX527434 GENOMIC 9966523 542133800 2014-07-23 SC_RUN_12837_1#13 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568445/12837_1#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568445/12837_1#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_1#13 ERR496942 SC_EXP_12216_4#93 250 3b6e2f2bc0917207c2c15ee07b52d173;4d66dca3a1532dfb88f3b2e8e393126d 1313 c092b29d7ed47b734bb6adf9d7f5119f;09b6dd3ec4191253659b75a9dd62da6b SAMEA2238853 2014-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496942/ERR496942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496942/ERR496942_2.fastq.gz 5044326 WGS 2104370-sc-2013-11-05T12:03:30Z-1750217 RANDOM 167517040;170833730 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496942/ERR496942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496942/ERR496942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496942/12216_4#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496942/12216_4#93.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR496/ERR496942/ERR496942_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR496/ERR496942/ERR496942_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496942/12216_4#93.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496942/12216_4#93.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 277866692;8203 ERS367665 ERX462358 GENOMIC 9399883 504432600 2014-05-06 SC_RUN_12216_4#93 fasp.sra.ebi.ac.uk:/vol1/run/ERR496/ERR496942/12216_4#93.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR496/ERR496942/12216_4#93.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA307756 12216_4#93 ERR461499 SC_EXP_11861_2#33 216 47f611388c57dbf4a711f177544d7eb5;d1a1b8f2a2bf09281be466b78eb306d9 1313 901fb0354780081617a113fd1ec2760e;82f41c371c6e42784e7050d4ce9d1af4 SAMEA2238693 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461499/ERR461499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461499/ERR461499_2.fastq.gz 4017338 WGS 2093029-sc-2013-11-05T12:00:50Z-1750055 RANDOM 123198669;129969491 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461499/ERR461499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461499/ERR461499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461499/11861_2#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461499/11861_2#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461499/ERR461499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461499/ERR461499_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461499/11861_2#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461499/11861_2#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 205364907;6716 ERS367505 ERX427840 GENOMIC 9020858 401733800 2014-03-18 SC_RUN_11861_2#33 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461499/11861_2#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461499/11861_2#33.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#33 ERR461497 SC_EXP_11861_2#30 216 6dff16e9ec748115e4180ed763f87057;c68aeed004f316b7d422bcb5aefaf496 1313 b216a55591e035149fb2f1719f75ad77;06a4383dcffd8ce9b6521aa21ab61455 SAMEA2238691 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461497/ERR461497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461497/ERR461497_2.fastq.gz 4417786 WGS 2092630-sc-2013-11-05T12:00:48Z-1750053 RANDOM 137560211;145105032 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461497/ERR461497_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461497/ERR461497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461497/11861_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461497/11861_2#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461497/ERR461497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461497/ERR461497_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461497/11861_2#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461497/11861_2#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 230195176;7299 ERS367503 ERX427838 GENOMIC 9020917 441778600 2014-03-18 SC_RUN_11861_2#30 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461497/11861_2#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461497/11861_2#30.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_2#30 ERR461632 SC_EXP_11861_3#81 226 8ca5515bb429d806cc62baff82b69fcf;85ddf3f05d8835312965eee5c0f70988 1313 7517545d11e29d22175a786eada7dec0;81a54946badfa1457b015fc27a4b7d09 SAMEA2238934 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461632/ERR461632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461632/ERR461632_2.fastq.gz 4231518 WGS 2111306-sc-2013-11-05T12:05:08Z-1750298 RANDOM 136549997;142620279 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461632/ERR461632_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461632/ERR461632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461632/11861_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461632/11861_3#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461632/ERR461632_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461632/ERR461632_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461632/11861_3#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461632/11861_3#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 226114727;6966 ERS367746 ERX427973 GENOMIC 9016216 423151800 2014-03-18 SC_RUN_11861_3#81 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461632/11861_3#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461632/11861_3#81.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#81 ERR461625 SC_EXP_11861_3#74 226 5a0678c3b555eab918882a51cb557dc4;623a2de20e47ad7824967711fa022a66 1313 bbd1be616d2a6918c13c9219cb4f2542;de1d6eb933a6c8cf253103bace69b31d SAMEA2238926 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461625/ERR461625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461625/ERR461625_2.fastq.gz 4221816 WGS 2111224-sc-2013-11-05T12:05:01Z-1750290 RANDOM 134823953;141660087 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461625/ERR461625_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461625/ERR461625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461625/11861_3#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461625/11861_3#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461625/ERR461625_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461625/ERR461625_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461625/11861_3#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461625/11861_3#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 226230659;7080 ERS367738 ERX427966 GENOMIC 9016227 422181600 2014-03-18 SC_RUN_11861_3#74 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461625/11861_3#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461625/11861_3#74.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461355 SC_EXP_11860_8#73 222 0322bc474f2c1b63b5f12692cd5753c8;cb6ed701cb90d8c7d3aed5e41150b0f6 1313 78636680ae4d82b16decefec9ec421f4;4515d2170ba617d9bc440945d8564c74 SAMEA2239205 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461355/ERR461355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461355/ERR461355_2.fastq.gz 3625226 WGS 2002167-sc-2013-11-05T12:09:46Z-1750576 RANDOM 114094939;119920843 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461355/ERR461355_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461355/ERR461355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461355/11860_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461355/11860_8#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461355/ERR461355_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461355/ERR461355_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461355/11860_8#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461355/11860_8#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 188251895;6021 ERS368017 ERX427696 GENOMIC 9015274 362522600 2014-03-18 SC_RUN_11860_8#73 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461355/11860_8#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461355/11860_8#73.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#73 ERR461038 SC_EXP_11860_5#34 210 9f58a22945532dfaf01f61057c41f7ec;c13d95ae08eb50641330dccd6e0900b9 1313 7534621e903f58c337f763f5e035d4a6;99a0444195a2090864e6d13c370c95d1 SAMEA2238403 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461038/ERR461038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461038/ERR461038_2.fastq.gz 1752556 WGS 2070825-sc-2013-11-05T11:55:51Z-1749762 RANDOM 47832164;51250453 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461038/ERR461038_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461038/ERR461038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461038/11860_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461038/11860_5#34.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461038/ERR461038_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461038/ERR461038_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461038/11860_5#34.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461038/11860_5#34.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 76558169;2987 ERS367215 ERX427379 GENOMIC 9014499 175255600 2014-03-18 SC_RUN_11860_5#34 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461038/11860_5#34.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461038/11860_5#34.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461454 SC_EXP_11861_1#79 225 a9a3042bd7dc8472bc272d7f0a9d94fd;465099c66d288b26c08d788a5764fb09 1313 58aca0fc10e87a95bf38bd77ece68678;34e95a52977ddf9ef0006bedf8cd60b2 SAMEA2238642 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461454/ERR461454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461454/ERR461454_2.fastq.gz 5644558 WGS 2090866-sc-2013-11-05T11:59:56Z-1750003 RANDOM 173725528;184128626 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461454/ERR461454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461454/ERR461454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461454/11861_1#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461454/11861_1#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461454/ERR461454_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461454/ERR461454_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461454/11861_1#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461454/11861_1#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 290633862;9484 ERS367454 ERX427795 GENOMIC 9016189 564455800 2014-03-18 SC_RUN_11861_1#79 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461454/11861_1#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461454/11861_1#79.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461569 SC_EXP_11861_3#16 226 381133358618e3033f74b4319403052c;5c0a8e217dcda60a16f7f35b739b403c 1313 de61b1a5dd9c009bdcb1d5acfd5ed4cb;d25bef1044edbea690fe7aeefd3b4a3e SAMEA2238870 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461569/ERR461569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461569/ERR461569_2.fastq.gz 4116304 WGS 2110357-sc-2013-11-05T12:04:06Z-1750234 RANDOM 132725502;138926903 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461569/ERR461569_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461569/ERR461569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461569/11861_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461569/11861_3#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461569/ERR461569_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461569/ERR461569_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461569/11861_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461569/11861_3#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 220748696;6804 ERS367682 ERX427910 GENOMIC 9016291 411630400 2014-03-18 SC_RUN_11861_3#16 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461569/11861_3#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461569/11861_3#16.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR461564 SC_EXP_11861_3#11 226 65e8c5ffed5ae0383b5d837757a16e0f;cce1577eae769c60b89dec2db0b7779b 1313 fe311c9789680f94a8ae34cdddbc2a1b;8cc09d43eff00990bb96bfcaf1f45509 SAMEA2238865 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461564/ERR461564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461564/ERR461564_2.fastq.gz 3620588 WGS 2110192-sc-2013-11-05T12:04:01Z-1750229 RANDOM 116934397;122695611 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461564/ERR461564_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461564/ERR461564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461564/11861_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461564/11861_3#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461564/ERR461564_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461564/ERR461564_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461564/11861_3#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461564/11861_3#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 194293625;6057 ERS367677 ERX427905 GENOMIC 9016231 362058800 2014-03-18 SC_RUN_11861_3#11 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461564/11861_3#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461564/11861_3#11.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_3#11 ERR460998 SC_EXP_11860_4#87 217 96732dbb0df94af37a1e9a890c6394d2;1f4972d4e7b540b3dc6141d58bca56cd 1313 d79e5997e6ddf4789913fb9f333fa906;769e8a69b6a50a9a819c9eb78126001a SAMEA2238361 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460998/ERR460998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460998/ERR460998_2.fastq.gz 4553310 WGS 2070237-sc-2013-11-05T11:55:10Z-1749719 RANDOM 146002248;154396710 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460998/ERR460998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460998/ERR460998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460998/11860_4#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460998/11860_4#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460998/ERR460998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460998/ERR460998_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460998/11860_4#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460998/11860_4#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 246404381;7316 ERS367173 ERX427339 GENOMIC 9012518 455331000 2014-03-18 SC_RUN_11860_4#87 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460998/11860_4#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460998/11860_4#87.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_4#87 ERR461266 SC_EXP_11860_7#77 206 8c4f33d579ed0046cb8ce7d08069e25c;bbe3f69a45a423b7c0cb90a07d6fb142 1313 6dddb43edb34ccf5afeb286750f3055a;c8fc3480ad0d38f157c9285e49538ece SAMEA2239116 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461266/ERR461266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461266/ERR461266_2.fastq.gz 4495608 WGS 2000188-sc-2013-11-05T12:08:11Z-1750486 RANDOM 143598247;150529784 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461266/ERR461266_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461266/ERR461266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461266/11860_7#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461266/11860_7#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461266/ERR461266_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461266/ERR461266_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461266/11860_7#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461266/11860_7#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 239176417;7373 ERS367928 ERX427607 GENOMIC 9014933 449560800 2014-03-18 SC_RUN_11860_7#77 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461266/11860_7#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461266/11860_7#77.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#77 ERR461058 SC_EXP_11860_5#55 210 707aff8c558b24110fe125d8ff7525fc;9c908aac0e10cae6044df29740541656 1313 d7cb7dbe38af291cc1ce631c2ccbd0a3;52f87ba72885a940b38299d68790e6a7 SAMEA2238424 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461058/ERR461058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461058/ERR461058_2.fastq.gz 2218558 WGS 2071102-sc-2013-11-05T11:56:11Z-1749783 RANDOM 58096849;61400466 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461058/ERR461058_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461058/ERR461058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461058/11860_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461058/11860_5#55.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461058/ERR461058_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461058/ERR461058_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461058/11860_5#55.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461058/11860_5#55.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 92638971;3806 ERS367236 ERX427399 GENOMIC 9014561 221855800 2014-03-18 SC_RUN_11860_5#55 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461058/11860_5#55.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461058/11860_5#55.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#55 ERR433896 SC_EXP_11658_2#42 231 fcf1e968950bbf87f0852d4217958315;1dac5b2d8b4506aab187a0fa1ef2b717 1313 4493482ccb26b38124dbf745177ff2e3;629ee6575d2f9bad8fb5592511107fe8 SAMEA2204066 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433896/ERR433896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433896/ERR433896_2.fastq.gz 3933584 WGS PATH2222-sc-2013-10-09T11:54:38Z-1712658 RANDOM 124210069;129109577 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433896/ERR433896_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433896/ERR433896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433896/11658_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433896/11658_2#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433896/ERR433896_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433896/ERR433896_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433896/11658_2#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433896/11658_2#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 204774352;6540 ERS356577 ERX400171 GENOMIC 8593320 393358400 2014-02-18 SC_RUN_11658_2#42 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433896/11658_2#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433896/11658_2#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11658_2#42 ERR433686 SC_EXP_11657_4#88 219 e78bd8185908ff8400a71f7a8e0c6a76;705b4ba873ea7e1afb9360cdc07d0eac 1313 66678c894b60b0748a1f38bcca941421;4a029652a7ae43ebeaeaeb348553ddf6 SAMEA2204172 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433686/ERR433686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433686/ERR433686_2.fastq.gz 3448902 WGS PATH3369-sc-2013-10-09T11:56:40Z-1712765 RANDOM 112582876;116112558 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433686/ERR433686_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433686/ERR433686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433686/11657_4#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433686/11657_4#88.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433686/ERR433686_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433686/ERR433686_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433686/11657_4#88.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433686/11657_4#88.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 185488598;5726 ERS356683 ERX399961 GENOMIC 8529858 344890200 2014-02-18 SC_RUN_11657_4#88 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433686/11657_4#88.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433686/11657_4#88.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11657_4#88 ERR434018 SC_EXP_11679_1#54 216 9e04645db308289314f46e7b3698730f;8feae89525b7faf5fe36ca60a6c30047 1313 feb4dd5419e4e0d327076017267e207e;e4963ceac36da85d2e436d5d9842ebfa SAMEA2204010 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434018/ERR434018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434018/ERR434018_2.fastq.gz 4168246 WGS 2009215888-sc-2013-10-09T11:53:34Z-1712601 RANDOM 128475278;133515683 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434018/ERR434018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR434/ERR434018/ERR434018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434018/11679_1#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434018/11679_1#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434018/ERR434018_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR434/ERR434018/ERR434018_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434018/11679_1#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR434/ERR434018/11679_1#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 210842465;6946 ERS356521 ERX400293 GENOMIC 8801473 416824600 2014-02-18 SC_RUN_11679_1#54 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434018/11679_1#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR434/ERR434018/11679_1#54.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#54 ERR340894 SC_EXP_10208_2#84 215 03861f19787d7e47ea231510f78a6178 1313 62c1053ae328092031d307327bd15782;d0634e16e9a18ad7fe4b90cd96957338 SAMEA2057716 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340894/ERR340894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340894/ERR340894_2.fastq.gz 2534028 WGS PBCN0490-sc-2013-03-27T13:21:56Z-1603796 RANDOM 165225012;189405036 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340894/ERR340894_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340894/ERR340894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340894/10208_2#84.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340894/ERR340894_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340894/ERR340894_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340894/10208_2#84.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 493379439 ERS225929 ERX313743 GENOMIC 7400623 506805600 2013-09-16 SC_RUN_10208_2#84 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340894/10208_2#84.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#84 ERR425388 SC_EXP_11511_7#35 224 88b3a5fb5251fde1332b10e302a9419f;c11bff32f7dcb918717820b78b61df64 1313 73b80f252d2155105eb175065c37646c;fc266e0af9289f6fcd55fa54e8c43779 SAMEA2162061 2014-02-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425388/ERR425388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425388/ERR425388_2.fastq.gz 4922398 WGS 6298_03-sc-2013-07-03T13:29:03Z-1659199 RANDOM 153483411;157843565 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425388/ERR425388_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR425/ERR425388/ERR425388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425388/11511_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425388/11511_7#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425388/ERR425388_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR425/ERR425388/ERR425388_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425388/11511_7#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR425/ERR425388/11511_7#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253411239;8244 ERS322375 ERX391663 GENOMIC 8520693 492239800 2014-02-10 SC_RUN_11511_7#35 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425388/11511_7#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR425/ERR425388/11511_7#35.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285184 11511_7#35 ERR340873 SC_EXP_10208_2#59 215 6aba9ecb51799754a55705e59b752723 1313 e55036909544931ea09bc71ab867e0d4;95a6288beccf1d31a428dd5dc1906350 SAMEA2059576 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340873/ERR340873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340873/ERR340873_2.fastq.gz 2980867 WGS PBCN0464-sc-2013-03-27T13:21:31Z-1603771 RANDOM 192645979;220116337 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340873/ERR340873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340873/ERR340873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340873/10208_2#59.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340873/ERR340873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340873/ERR340873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340873/10208_2#59.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 571785547 ERS225904 ERX313722 GENOMIC 7400608 596173400 2013-09-16 SC_RUN_10208_2#59 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340873/10208_2#59.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#59 ERR331409 SC_EXP_10050_2#19 224 63dd52d1e79cfe30a5de05f5397b40cf 1313 44050fd9d9eb8938ead1d05c6d0053e3;bc34b969a67ee23bcfc405400eb0fe4b SAMEA2058875 2013-08-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331409/ERR331409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331409/ERR331409_2.fastq.gz 2103618 WGS PBCN0032-sc-2013-03-27T13:16:25Z-1603465 RANDOM 131996936;143608547 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331409/ERR331409_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR331/ERR331409/ERR331409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331409/10050_2#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331409/ERR331409_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR331/ERR331409/ERR331409_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR331/ERR331409/10050_2#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 384075067 ERS225601 ERX304338 GENOMIC 7376915 420723600 2013-08-27 SC_RUN_10050_2#19 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR331/ERR331409/10050_2#19.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA247607 10050_2#19 ERR340871 SC_EXP_10208_2#57 215 6fa6ef5c5cf0c0aa073f519a73540677 1313 301347c563288c22f372742009e5235b;e4547ba22525d0bff6c5df7b59dc5e4e SAMEA2057702 2013-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340871/ERR340871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340871/ERR340871_2.fastq.gz 3204054 WGS PBCN0461-sc-2013-03-27T13:21:29Z-1603769 RANDOM 210774967;241238316 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340871/ERR340871_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR340/ERR340871/ERR340871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340871/10208_2#57.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340871/ERR340871_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR340/ERR340871/ERR340871_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR340/ERR340871/10208_2#57.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 618919032 ERS225902 ERX313720 GENOMIC 7400584 640810800 2013-09-16 SC_RUN_10208_2#57 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR340/ERR340871/10208_2#57.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA250653 10208_2#57 ERR129162 SC_EXP_7622_4#42 221 f0ca569368b397540777c7edd7e0c06d 1313 0ffeff9f27acd08b11e2a7d0ebccbbdb;88d931da077e761f56b739840d6ef1d8 SAMEA1463174 2012-05-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129162/ERR129162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129162/ERR129162_2.fastq.gz 2746380 WGS MD5007-sc-2011-11-08T10:08:02Z-1298421 RANDOM 295322597;302030561 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129162/ERR129162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR129/ERR129162/ERR129162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129162/7622_4#42.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129162/ERR129162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR129/ERR129162/ERR129162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR129/ERR129162/7622_4#42.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 574834027 ERS070053 ERX105303 GENOMIC 4336571 549276000 2012-05-28 SC_RUN_7622_4#42 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR129/ERR129162/7622_4#42.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA131750 Streptococcus pneumoniae Streptococcus pneumoniae ERR124226 SC_EXP_7553_4#10 206 5fa2493fe59ffc33220e6ec3d31a9127 1313 849b964557ae0d1f86c53d7918b6bd96;f00edc9e92c91d1772d8a8bcc1a3e9ad SAMEA1462970 2012-05-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124226/ERR124226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124226/ERR124226_2.fastq.gz 5449569 WGS ND6123-sc-2011-11-08T10:08:49Z-1298485 RANDOM 577552602;577566211 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124226/ERR124226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR124/ERR124226/ERR124226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124226/7553_4#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124226/ERR124226_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR124/ERR124226/ERR124226_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR124/ERR124226/7553_4#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1114828459 ERS070117 ERX100408 GENOMIC 4382934 1089913800 2012-05-09 SC_RUN_7553_4#10 66 fasp.sra.ebi.ac.uk:/vol1/run/ERR124/ERR124226/7553_4#10.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA127537 Streptococcus pneumoniae Streptococcus pneumoniae ERR064034 SC_EXP_6925_8#9 228 a3aeaca1a92ca6c33f69cf12acc62739 1313 4f589c4e5cbfe8a7fd4fb148ce6131cc;1581f3ce4388b515b96838f4d7604400 SAMEA1028978 2012-01-05 ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064034/ERR064034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064034/ERR064034_2.fastq.gz 3051059 WGS SMRU2529-sc-2011-01-27-1062742 RANDOM 187819786;180466534 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064034/ERR064034_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR064/ERR064034/ERR064034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064034/6925_8#9.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064034/ERR064034_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR064/ERR064034/ERR064034_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR064/ERR064034/6925_8#9.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2479 ERP000598 472942505 ERS022039 ERX042007 GENOMIC 3686198 457658850 2012-03-19 SC_RUN_6925_8#9 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR064/ERR064034/6925_8#9.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-04-05T19:23:11Z-1717 Illumina HiSeq 2000 paired end sequencing ERA079155 Streptococcus pneumoniae Streptococcus pneumoniae ERR065958 SC_EXP_6952_4#6 232 2fe2fb48cfbbe7fbde6226ded38ef5c5 1313 b178acc3074380dadbae24a25f73042f;fff5ad2cf828de2cef061b62a9ffa636 SAMEA1032451 2012-01-10 ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065958/ERR065958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065958/ERR065958_2.fastq.gz 9412454 WGS 436915-sc-2011-08-01T09:46:22Z-1250220 RANDOM 581604872;618737165 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065958/ERR065958_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR065/ERR065958/ERR065958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065958/6952_4#6.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065958/ERR065958_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR065/ERR065958/ERR065958_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR065/ERR065958/6952_4#6.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 1524342412 ERS044155 ERX043821 GENOMIC 3737354 1411868100 2012-01-10 SC_RUN_6952_4#6 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR065/ERR065958/6952_4#6.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA079700 Streptococcus pneumoniae ERR054612 SC_EXP_6755_5#8 248 8d16734d15b41884a57274a80463b218 1313 b29b21a0803ccb2ad32a372d7c91ee7f;a13bd5daa414f6f5d119f4897450578d SAMEA1025590 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054612/ERR054612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054612/ERR054612_2.fastq.gz 8813574 WGS SMRU1160-sc-2011-01-27-1061373 RANDOM 468837864;491660950 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054612/ERR054612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054612/ERR054612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054612/6755_5#8.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054612/ERR054612_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054612/ERR054612_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054612/6755_5#8.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1217125213 ERS020670 ERX031658 GENOMIC 3307620 1322036100 2011-11-15 SC_RUN_6755_5#8 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054612/6755_5#8.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR056701 SC_EXP_6775_1#19 207 ed4f5908a3b779283cce4ff11cc55f41 1313 291be4a1b23007bac9112c0f0c7a87e9;7fc73a41c347d469b2470c6eeff2b171 SAMEA1024793 2011-11-29 ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056701/ERR056701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056701/ERR056701_2.fastq.gz 5286540 WGS SMRU835-sc-2011-01-27-1061024 RANDOM 334653838;354585647 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056701/ERR056701_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR056/ERR056701/ERR056701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056701/6775_1#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056701/ERR056701_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR056/ERR056701/ERR056701_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR056/ERR056701/6775_1#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2393 ERP000483 877373479 ERS020345 ERX034545 GENOMIC 3152356 792981000 2011-11-29 SC_RUN_6775_1#19 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR056/ERR056701/6775_1#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-18 Illumina HiSeq 2000 paired end sequencing ERA071205 Streptococcus pneumoniae Streptococcus pneumoniae ERR054293 SC_EXP_6710_8#24 230 3c75541506a2482cc83f26900e537973 1313 3dea0a388cc44a594443956ec432d56e;811c098da41c20655de67b01e99978a8 SAMEA1025186 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054293/ERR054293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054293/ERR054293_2.fastq.gz 9538714 WGS SMRU1416-sc-2011-01-27-1061629 RANDOM 537347584;560538379 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054293/ERR054293_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054293/ERR054293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054293/6710_8#24.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054293/ERR054293_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054293/ERR054293_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054293/6710_8#24.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1378745683 ERS020926 ERX031339 GENOMIC 3348874 1430807100 2011-11-15 SC_RUN_6710_8#24 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054293/6710_8#24.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR054455 SC_EXP_6753_2#18 243 96c96cf9e6cb5f410b65145473d49bfc 1313 6c0ab97f1a6aadca7a9efd5d5f8c05ce;b32cc24264b5bced448860aa8e62b90f SAMEA1025248 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054455/ERR054455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054455/ERR054455_2.fastq.gz 4102445 WGS SMRU1507-sc-2011-01-27-1061720 RANDOM 212827419;218343941 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054455/ERR054455_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054455/ERR054455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054455/6753_2#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054455/ERR054455_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054455/ERR054455_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054455/6753_2#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 553062357 ERS021017 ERX031501 GENOMIC 3414191 615366750 2011-11-15 SC_RUN_6753_2#18 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054455/6753_2#18.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR326721 SC_EXP_9953_7#32 227 95825f04fd5868b74c126223cc06afd0 1313 ca0c7ba7314a26227be0c5bfcc6a8c5e;36217924a8f8d6fcdb11a1d5afa6b60f SAMEA2059567 2013-08-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326721/ERR326721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326721/ERR326721_2.fastq.gz 2473240 WGS PBCN0192-sc-2013-03-27T13:18:12Z-1603567 RANDOM 166921932;166311067 BAM Streptococcus pneumoniae Streptococcus pneumoniae genetic diversity and invasive pneumococcal disease ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326721/ERR326721_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR326/ERR326721/ERR326721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326721/9953_7#32.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326721/ERR326721_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR326/ERR326721/ERR326721_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR326/ERR326721/9953_7#32.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3259 ERP001789 455599660 ERS225702 ERX299821 GENOMIC 7376879 494648000 2013-08-14 SC_RUN_9953_7#32 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR326/ERR326721/9953_7#32.bam Streptococcus_pneumoniae_genetic_diversity_and_invasive_pneumococcal_disease-sc-2012-09-17T11:32:15Z-2363 Illumina HiSeq 2000 paired end sequencing ERA246551 9953_7#32 ERR2090810 SC_EXP_22841_2#79 402 d90e10c3cf750fed6af10aaa0f3a5597;1415888291b76f6a9f112d2e8ee26cfe 1313 ac49e58969bf80ff7dead2ddce58e4b7;85a660ad5168bc90d7aae4f285ed2149 SAMEA104035658 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090810/ERR2090810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090810/ERR2090810_2.fastq.gz 2872430 WGS b2bd11b0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 61022877;64159431 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090810/ERR2090810_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/000/ERR2090810/ERR2090810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090810/22841_2#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090810/22841_2#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090810/ERR2090810_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/000/ERR2090810/ERR2090810_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090810/22841_2#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090810/22841_2#79.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 86161472;4761 ERS1699551 ERX2147604 GENOMIC DN483653U:G10 359053750 2017-08-08 SC_RUN_22841_2#79 103 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090810/22841_2#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090810/22841_2#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#79 ERR2091256 SC_EXP_22841_4#147 448 c6c37159f74a269ac3217b61f0e8b158;6b877b98b781684f4a7c6ab87d5c4149 1313 41589cc73839b2034d4a18f41dd564b4;f417a12f9c072ed2d9be57d6711e8547 SAMEA104035453 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091256/ERR2091256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091256/ERR2091256_2.fastq.gz 2442138 WGS a1357590-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 48283285;53067914 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091256/ERR2091256_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2091256/ERR2091256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091256/22841_4#147.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091256/22841_4#147.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091256/ERR2091256_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2091256/ERR2091256_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091256/22841_4#147.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091256/22841_4#147.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 69469150;4103 ERS1699346 ERX2148050 GENOMIC DN477153Q:D7 305267250 2017-08-08 SC_RUN_22841_4#147 107 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091256/22841_4#147.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091256/22841_4#147.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_4#147 ERR2090778 SC_EXP_22841_2#47 380 e639e2bbb5c96a5286da3476dc4b69cd;0479e2d4fb89748c74e3e7d11ab0a1e7 1313 9e00303062253b5a463c2eb215c41333;79f7f3a8c4c84815ce169fbf26933edf SAMEA104035626 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090778/ERR2090778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090778/ERR2090778_2.fastq.gz 3265858 WGS b16c27b0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 72264780;73812599 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090778/ERR2090778_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090778/ERR2090778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090778/22841_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090778/22841_2#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090778/ERR2090778_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090778/ERR2090778_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090778/22841_2#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090778/22841_2#47.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 100572873;5304 ERS1699519 ERX2147572 GENOMIC DN483653U:G6 408232250 2017-08-08 SC_RUN_22841_2#47 102 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090778/22841_2#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090778/22841_2#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_2#47 ERR2090713 SC_EXP_22841_1#172 430 d0a2742fe20fc5e0a1c59d0310f25b52;42447368d1bac2960714035699543290 1313 758f1d6629904b4351046bf805693162;9d5a20371d038304e8f1d0d91ef3e0b6 SAMEA104035558 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090713/ERR2090713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090713/ERR2090713_2.fastq.gz 2828296 WGS a9ae7f00-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 51848121;57410436 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090713/ERR2090713_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2090713/ERR2090713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090713/22841_1#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090713/22841_1#172.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090713/ERR2090713_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2090713/ERR2090713_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090713/22841_1#172.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090713/22841_1#172.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74413170;4682 ERS1699451 ERX2147507 GENOMIC DN477156T:E10 353537000 2017-08-08 SC_RUN_22841_1#172 106 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090713/22841_1#172.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090713/22841_1#172.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#172 ERR2090557 SC_EXP_22841_1#16 459 14e981a3e42ae5f5a44b942292fb0357;ff581b0eaacb2ddb9e67677f10ff7f0c 1313 ce9b902a68680c4066f1a8c7ce41a887;18e0d4b8b37ad3a32ec46458c4411994 SAMEA104035209 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090557/ERR2090557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090557/ERR2090557_2.fastq.gz 1983872 WGS 8a7b6f80-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 40614557;41283026 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090557/ERR2090557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2090557/ERR2090557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090557/22841_1#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090557/22841_1#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090557/ERR2090557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2090557/ERR2090557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090557/22841_1#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090557/22841_1#16.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 54873666;3358 ERS1699102 ERX2147351 GENOMIC DN477155S:H2 247984000 2017-08-08 SC_RUN_22841_1#16 117 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090557/22841_1#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090557/22841_1#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_1#16 ERR2089522 SC_EXP_21999_8#77 449 802e0dbfbb95c7b9a0d089c93eef6de2;affdc791b8f1c01604bcdb2cdfee44c4 1313 231213284646dd947560a15e2b3c0378;f98ed20401b1a95204afd1b883b2f527 SAMEA104154788 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089522/ERR2089522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089522/ERR2089522_2.fastq.gz 3281656 WGS 724a09a0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 56971093;60380297 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089522/ERR2089522_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/002/ERR2089522/ERR2089522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089522/21999_8#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089522/21999_8#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089522/ERR2089522_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/002/ERR2089522/ERR2089522_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089522/21999_8#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089522/21999_8#77.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 79392402;5328 ERS1813806 ERX2146316 GENOMIC DN476959T:E10 410207000 2017-08-08 SC_RUN_21999_8#77 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089522/21999_8#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089522/21999_8#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#77 ERR2089471 SC_EXP_21999_8#26 473 619b372caa5740fe17ff7efbc71afa60;7963f24220f63799bb958131f2baf45a 1313 60ff64b9b6f62b68e592fb2388eade97;cb31d38cd7b321236dbff32b011f800d SAMEA104154736 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089471/ERR2089471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089471/ERR2089471_2.fastq.gz 2386828 WGS 701660c0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 43497592;45727353 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089471/ERR2089471_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/001/ERR2089471/ERR2089471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089471/21999_8#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089471/21999_8#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089471/ERR2089471_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/001/ERR2089471/ERR2089471_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089471/21999_8#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089471/21999_8#26.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 59862968;3987 ERS1813754 ERX2146265 GENOMIC DN476959T:B4 298353500 2017-08-08 SC_RUN_21999_8#26 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089471/21999_8#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089471/21999_8#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#26 ERR2089866 SC_EXP_22114_6#78 457 0a44125ce34b8a0a834359a29b65b2fd;2fc6968e69ce21f5951690a36e4c997e 1313 8b43a2437780d6d5383be5762816e82b;93ed5808b8f4f36ae6ad49a7cf9ccec6 SAMEA104155055 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089866/ERR2089866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089866/ERR2089866_2.fastq.gz 1785278 WGS 905d7850-c37a-11e6-b158-3c4a9275d6c8 RANDOM 40760543;39955367 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089866/ERR2089866_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089866/ERR2089866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089866/22114_6#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089866/22114_6#78.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089866/ERR2089866_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089866/ERR2089866_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089866/22114_6#78.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089866/22114_6#78.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 55931914;3001 ERS1814073 ERX2146660 GENOMIC DN478829S:F10 223159750 2017-08-08 SC_RUN_22114_6#78 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089866/22114_6#78.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089866/22114_6#78.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22114_6#78 ERR2089516 SC_EXP_21999_8#71 444 2f71a0b7bd08c656e9ec2182f09f2235;6f3315476dd3ce3209d3b88efd759bc9 1313 dea44f3d7f866093af2e808ba3a67a87;e0c7fb1d0be7beeb9d6355e3d6560c50 SAMEA104154782 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089516/ERR2089516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089516/ERR2089516_2.fastq.gz 3173148 WGS 720efc70-c37a-11e6-b158-3c4a9275d6c8 RANDOM 55338818;57302380 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089516/ERR2089516_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089516/ERR2089516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089516/21999_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089516/21999_8#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089516/ERR2089516_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089516/ERR2089516_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089516/21999_8#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089516/21999_8#71.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76033660;5210 ERS1813800 ERX2146310 GENOMIC DN476959T:G9 396643500 2017-08-08 SC_RUN_21999_8#71 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089516/21999_8#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089516/21999_8#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#71 ERR2089407 SC_EXP_21999_7#145 463 fba44de7235bcd186b49de2f5fdf0de3;e2f2693b721168c3b2cf4cec7fdf9549 1313 e77a3c5d46f770ac8db79ca9f7373aa3;38a60f6f61ae07eaa242c582da7f7f21 SAMEA104154672 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089407/ERR2089407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089407/ERR2089407_2.fastq.gz 2617448 WGS 6765cc90-c37a-11e6-b158-3c4a9275d6c8 RANDOM 51213933;56727440 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089407/ERR2089407_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089407/ERR2089407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089407/21999_7#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089407/21999_7#145.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089407/ERR2089407_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089407/ERR2089407_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089407/21999_7#145.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089407/21999_7#145.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 73648161;4351 ERS1813690 ERX2146201 GENOMIC DN476874P:B7 327181000 2017-08-08 SC_RUN_21999_7#145 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089407/21999_7#145.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089407/21999_7#145.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#145 ERR2089363 SC_EXP_21999_7#101 452 60c3bdba158d8ee169c508b47a00e97a;3320128965c0993ed29ed06fc4fe417a 1313 409d346323c6df25a6a07a36efdb5a69;4cc71b448adb3ae26a141f95113fce04 SAMEA104154628 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089363/ERR2089363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089363/ERR2089363_2.fastq.gz 2808532 WGS 6563bb00-c37a-11e6-b158-3c4a9275d6c8 RANDOM 53293922;58898145 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089363/ERR2089363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/003/ERR2089363/ERR2089363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089363/21999_7#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089363/21999_7#101.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089363/ERR2089363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/003/ERR2089363/ERR2089363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089363/21999_7#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089363/21999_7#101.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 76733422;4699 ERS1813646 ERX2146157 GENOMIC DN476874P:F1 351066500 2017-08-08 SC_RUN_21999_7#101 75 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089363/21999_7#101.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089363/21999_7#101.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#101 ERR2089397 SC_EXP_21999_7#135 474 1deb50eff1987574665b0c2951ba5275;c02e8c8539aa72ce07bec1946370620c 1313 c3e8917c1fd51b57aaa1e36e02d7045c;a8ac8810ca4a91ee5f0e1e23f80f133b SAMEA104154662 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089397/ERR2089397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089397/ERR2089397_2.fastq.gz 2161308 WGS 66f4bb40-c37a-11e6-b158-3c4a9275d6c8 RANDOM 43250582;47282549 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089397/ERR2089397_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/007/ERR2089397/ERR2089397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089397/21999_7#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089397/21999_7#135.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089397/ERR2089397_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/007/ERR2089397/ERR2089397_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089397/21999_7#135.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089397/21999_7#135.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 61012302;3644 ERS1813680 ERX2146191 GENOMIC DN476874P:H5 270163500 2017-08-08 SC_RUN_21999_7#135 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089397/21999_7#135.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089397/21999_7#135.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#135 ERR2089386 SC_EXP_21999_7#124 476 3db12b9117043d89b98bc5fb9fe21e56;d64138446a4c991e8b3f1ba7fa7dc477 1313 e6bc1926422cc88dcfe2698721ba880b;b8daf8ec45297450b7531e02c1adf940 SAMEA104154652 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089386/ERR2089386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089386/ERR2089386_2.fastq.gz 1957544 WGS 666c2a50-c37a-11e6-b158-3c4a9275d6c8 RANDOM 40074221;43427377 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089386/ERR2089386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/006/ERR2089386/ERR2089386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089386/21999_7#124.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089386/21999_7#124.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089386/ERR2089386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/006/ERR2089386/ERR2089386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089386/21999_7#124.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089386/21999_7#124.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 56361215;3303 ERS1813670 ERX2146180 GENOMIC DN476874P:E4 244693000 2017-08-08 SC_RUN_21999_7#124 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089386/21999_7#124.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089386/21999_7#124.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_7#124 ERR1947867 SC_EXP_21946_6#347 448 9aa507e66b173ab4bb62e0c8faed7631;c3286ab056a1ae70a9a5eee0d01294f9 1313 0a0ca33c5f56046a2add12532ac8cccb;caace183bc6268ff89e3a5e64509fcbf SAMEA4561163 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947867/ERR1947867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947867/ERR1947867_2.fastq.gz 2084934 WGS 0ce2b010-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 52575073;72545525 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947867/ERR1947867_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947867/ERR1947867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947867/21946_6#347.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947867/21946_6#347.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947867/ERR1947867_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947867/ERR1947867_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947867/21946_6#347.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947867/21946_6#347.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 87945872;3567 ERS1460342 ERX2013654 GENOMIC 18471554 314825034 2017-04-25 SC_RUN_21946_6#347 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947867/21946_6#347.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947867/21946_6#347.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947776 SC_EXP_21946_6#256 431 9c0a2e1a467fdeee94eba1b4046a203e;69acaaf1f14274c59661ab5d5d2ef684 1313 6ffc0b0380473196d618ef368ce05bef;6a942b42220a2608f87a800fbf8d3d09 SAMEA4561071 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947776/ERR1947776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947776/ERR1947776_2.fastq.gz 2516030 WGS 09d6cfa0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 61754564;85506030 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947776/ERR1947776_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947776/ERR1947776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947776/21946_6#256.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947776/21946_6#256.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947776/ERR1947776_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947776/ERR1947776_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947776/21946_6#256.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947776/21946_6#256.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 104365980;4263 ERS1460250 ERX2013563 GENOMIC 18471372 379920530 2017-04-25 SC_RUN_21946_6#256 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947776/21946_6#256.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947776/21946_6#256.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947766 SC_EXP_21946_6#246 455 f8556520dec070f0299b05417dfe7156;1d46ae95fb0ab6a2d9e80b7d43bff7c2 1313 aa8e92e9bcf4d4df7df698ccd114b5d8;94daf2948d104b3daf86ef3858ea3335 SAMEA4561061 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947766/ERR1947766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947766/ERR1947766_2.fastq.gz 2841066 WGS 03f7f910-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 71633572;100399804 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947766/ERR1947766_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/006/ERR1947766/ERR1947766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947766/21946_6#246.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947766/21946_6#246.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947766/ERR1947766_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/006/ERR1947766/ERR1947766_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947766/21946_6#246.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947766/21946_6#246.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 122204516;4760 ERS1460240 ERX2013553 GENOMIC 18471347 429000966 2017-04-25 SC_RUN_21946_6#246 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947766/21946_6#246.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947766/21946_6#246.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947583 SC_EXP_21946_6#63 462 6e07dc8878349056c398592a72272f33;0e4086752437986b54a3822adb3fdba3 1313 80d25f3fe8afeeb4f8de025b9002e047;5b9b672727a06e01b3b26ce3944c8dec SAMEA4561612 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947583/ERR1947583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947583/ERR1947583_2.fastq.gz 2337104 WGS 37a16030-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 58601618;83210568 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947583/ERR1947583_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947583/ERR1947583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947583/21946_6#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947583/21946_6#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947583/ERR1947583_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947583/ERR1947583_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947583/21946_6#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947583/21946_6#63.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 100995177;3955 ERS1460791 ERX2013370 GENOMIC 18471697 352902704 2017-04-25 SC_RUN_21946_6#63 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947583/21946_6#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947583/21946_6#63.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947741 SC_EXP_21946_6#221 482 8f0e78954aafac8e8335d458b8b10a11;e94b4d7b3b488d017a433255284181d5 1313 fe7c8fa3e5b1e0cebbe81c48ed6e416b;23d2703fbfcc1a2cfa237cc497cbe8eb SAMEA4561036 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947741/ERR1947741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947741/ERR1947741_2.fastq.gz 2745960 WGS 031d9ea0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 69810950;100893330 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947741/ERR1947741_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/001/ERR1947741/ERR1947741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947741/21946_6#221.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947741/21946_6#221.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947741/ERR1947741_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/001/ERR1947741/ERR1947741_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947741/21946_6#221.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947741/21946_6#221.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 121679697;4595 ERS1460215 ERX2013528 GENOMIC 18471332 414639960 2017-04-25 SC_RUN_21946_6#221 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947741/21946_6#221.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947741/21946_6#221.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947515 SC_EXP_21903_8#361 411 ba590bc8b42d9cd49478d5331368d282;6ba49608fd8d38b3a5ea54dfcc4c4a9b 1313 eb049f7bafeb02d43b440fe2a4d3738a;66052a5df4c276a288d3e7f9a7b7d567 SAMEA4561543 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947515/ERR1947515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947515/ERR1947515_2.fastq.gz 1862498 WGS 356af830-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 45794141;66034511 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947515/ERR1947515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947515/ERR1947515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947515/21903_8#361.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947515/21903_8#361.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947515/ERR1947515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947515/ERR1947515_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947515/21903_8#361.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947515/21903_8#361.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 78679424;3185 ERS1460722 ERX2013302 GENOMIC 18453225 281237198 2017-04-25 SC_RUN_21903_8#361 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947515/21903_8#361.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947515/21903_8#361.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947507 SC_EXP_21903_8#353 443 971fc8e1914d2d6641f9ae6228ff0aa4;72aa69a2759e7e3ac88e7d94b0356cd2 1313 3061e7ccc7da615dd17bddb17537bd04;c0b2f519b6d2e46445551dd9dae4e702 SAMEA4561535 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947507/ERR1947507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947507/ERR1947507_2.fastq.gz 1602024 WGS 301771b0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 40434171;60008450 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947507/ERR1947507_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947507/ERR1947507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947507/21903_8#353.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947507/21903_8#353.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947507/ERR1947507_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947507/ERR1947507_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947507/21903_8#353.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947507/21903_8#353.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 70935421;2746 ERS1460714 ERX2013294 GENOMIC 18453224 241905624 2017-04-25 SC_RUN_21903_8#353 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947507/21903_8#353.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947507/21903_8#353.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947417 SC_EXP_21903_8#263 425 d89fc3168d672242ba5b5fd31c247f63;42bcce892bd5864819f3388e87b8d1dd 1313 25b0c98724c8b2d71e142b0ad9b95e6c;d64fa6b76c3465a849df7aaeabf6544f SAMEA4561445 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947417/ERR1947417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947417/ERR1947417_2.fastq.gz 1840128 WGS 275be100-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 45450537;66208891 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947417/ERR1947417_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/007/ERR1947417/ERR1947417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947417/21903_8#263.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947417/21903_8#263.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947417/ERR1947417_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/007/ERR1947417/ERR1947417_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947417/21903_8#263.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947417/21903_8#263.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 79114559;3121 ERS1460624 ERX2013204 GENOMIC 18453151 277859328 2017-04-25 SC_RUN_21903_8#263 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947417/21903_8#263.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947417/21903_8#263.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947369 SC_EXP_21903_8#215 441 4f73b25223a3820f06ba2599e0fa0445;1a5a8c5fcd196834593cd4aca3b70e84 1313 503de4bb0e61c4a9727f81bd9d41cc0c;31e7dd3cb3b5c3c2d2f0f557b4d7f32b SAMEA4561397 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947369/ERR1947369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947369/ERR1947369_2.fastq.gz 1904702 WGS 25874810-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 45527749;68707757 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947369/ERR1947369_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/009/ERR1947369/ERR1947369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947369/21903_8#215.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947369/21903_8#215.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947369/ERR1947369_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/009/ERR1947369/ERR1947369_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947369/21903_8#215.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947369/21903_8#215.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 81146847;3306 ERS1460576 ERX2013156 GENOMIC 18453145 287610002 2017-04-25 SC_RUN_21903_8#215 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947369/21903_8#215.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947369/21903_8#215.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947323 SC_EXP_21903_8#169 439 c335657588fa17dc51570375db7b6268;206dc002c476fad5dbdb9aecb0310b70 1313 ba7becefc8cd2935761218ba4426c42f;b6574155cecfac1b4ce0e08a94f43e95 SAMEA4561350 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947323/ERR1947323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947323/ERR1947323_2.fastq.gz 2134110 WGS 1e2701a0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 51689819;77771244 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947323/ERR1947323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/003/ERR1947323/ERR1947323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947323/21903_8#169.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947323/21903_8#169.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947323/ERR1947323_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/003/ERR1947323/ERR1947323_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947323/21903_8#169.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947323/21903_8#169.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 92172248;3649 ERS1460529 ERX2013110 GENOMIC 18430343 322250610 2017-04-25 SC_RUN_21903_8#169 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947323/21903_8#169.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947323/21903_8#169.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947414 SC_EXP_21903_8#260 435 628716cfeb9cac75c6bd268054fcb923;d8edebbf7319162156fe48e0064d148d 1313 9c65ef4f2dc8d7b0dcedcc420d4fe436;99e4b806771e1c5ccfe568d7e50ca710 SAMEA4561442 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947414/ERR1947414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947414/ERR1947414_2.fastq.gz 1975746 WGS 27393dd0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 48365768;72246802 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947414/ERR1947414_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/004/ERR1947414/ERR1947414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947414/21903_8#260.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947414/21903_8#260.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947414/ERR1947414_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/004/ERR1947414/ERR1947414_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947414/21903_8#260.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947414/21903_8#260.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 86049980;3403 ERS1460621 ERX2013201 GENOMIC 18453115 298337646 2017-04-25 SC_RUN_21903_8#260 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947414/21903_8#260.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947414/21903_8#260.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1947255 SC_EXP_21903_8#101 440 6bbb4608c3bff799c7b162822d78e4a4;8156e1c3e7d2e2f8622c7be323a712f2 1313 bee3b554d618ec4bc4db3d0f6fbd5747;c9342a8f4e7dc76a3bd5b2a6bb9db08a SAMEA4561281 2017-04-25 ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947255/ERR1947255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947255/ERR1947255_2.fastq.gz 2021462 WGS 1b60dcc0-b094-11e6-8d8d-3c4a9275d6c8 RANDOM 49740004;73893351 CRAM;CRAI Streptococcus pneumoniae Dutch_pneumococcal_carriage_isolates ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947255/ERR1947255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/005/ERR1947255/ERR1947255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947255/21903_8#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947255/21903_8#101.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947255/ERR1947255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR194/005/ERR1947255/ERR1947255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947255/21903_8#101.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR194/ERR1947255/21903_8#101.cram.crai HiSeq X Ten PAIRED Wellcome Sanger Institute;SC PRJEB18002 ERP019913 87968975;3449 ERS1460460 ERX2013042 GENOMIC 18430287 305240762 2017-04-25 SC_RUN_21903_8#101 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947255/21903_8#101.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR194/ERR1947255/21903_8#101.cram.crai Dutch_pneumococcal_carriage_isolates-sc-4484 HiSeq X Ten paired end sequencing ERA894212 pneumococcus ERR1788400 SC_EXP_21127_2#14 474 6e1dffe1af5a797e864a6260b12306c3;1ce574a1bf3670286087ddb451a34c1f 1313 e6ead5fe21b75bb5603a7bb914057a3b;0d247f31d56106f175f69aa41c2f98e8 SAMEA4388402 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788400/ERR1788400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788400/ERR1788400_2.fastq.gz 2864042 WGS 4c2de4c0-5256-11e6-9a3d-3c4a9275d6c8 RANDOM 60676728;59805598 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788400/ERR1788400_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/000/ERR1788400/ERR1788400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788400/21127_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788400/21127_2#14.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/000/ERR1788400/ERR1788400_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/000/ERR1788400/ERR1788400_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788400/21127_2#14.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788400/21127_2#14.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 83683221;4764 ERS1299851 ERX1852123 GENOMIC DN465286P:F2 358005250 2017-01-11 SC_RUN_21127_2#14 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788400/21127_2#14.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788400/21127_2#14.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_2#14 ERR1214440 SC_EXP_18090_1#120 448 756c3bfd7c21e8e1c63bde484c0e7c05;781f83725edfca16c575932d85ffd0cc 1313 82dc129d8f077dd7e9248fc5e654df61;e8b571f58d5ac1208c4be177a0c326db SAMEA3431401 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214440/ERR1214440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214440/ERR1214440_2.fastq.gz 2562608 WGS GPS_US_PATH4011-sc-2296575 RANDOM 49997863;55227542 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214440/ERR1214440_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/000/ERR1214440/ERR1214440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214440/18090_1#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214440/18090_1#120.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214440/ERR1214440_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/000/ERR1214440/ERR1214440_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214440/18090_1#120.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214440/18090_1#120.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 74363441;4288 ERS740686 ERX1286653 GENOMIC 15034818 320326000 2016-01-19 SC_RUN_18090_1#120 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214440/18090_1#120.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214440/18090_1#120.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_1#120 ERR1788152 SC_EXP_21053_8#141 423 615e73c01db6908f0ad4fdb98c92b8d0;5104bf121719bb0efe291984006c3803 1313 05f1f6bcc9ba92dca8171aa2d23a3118;8dce3f2b8c7502fc72c9105ca27dca10 SAMEA4387908 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788152/ERR1788152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788152/ERR1788152_2.fastq.gz 3024030 WGS 5a67aae0-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 56806954;59714015 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788152/ERR1788152_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/002/ERR1788152/ERR1788152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788152/21053_8#141.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788152/21053_8#141.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/002/ERR1788152/ERR1788152_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/002/ERR1788152/ERR1788152_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788152/21053_8#141.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788152/21053_8#141.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 81336037;5050 ERS1299357 ERX1851875 GENOMIC DN465033T:F6 378003750 2017-01-11 SC_RUN_21053_8#141 69 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788152/21053_8#141.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788152/21053_8#141.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21053_8#141 ERR1788205 SC_EXP_21127_1#6 415 9849dd413ae6d028228f80b652723cf0;bdecad631ce60f0a0ac20d28dc1a5099 1313 6a65dbde01e16cc198e97b8a41d74f42;101538db054e4342f62c0a2c595bfc16 SAMEA4388325 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788205/ERR1788205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788205/ERR1788205_2.fastq.gz 2513226 WGS 5c4a9bb0-5255-11e6-9a3d-3c4a9275d6c8 RANDOM 45524522;45211727 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788205/ERR1788205_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/005/ERR1788205/ERR1788205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788205/21127_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788205/21127_1#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788205/ERR1788205_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/005/ERR1788205/ERR1788205_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788205/21127_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788205/21127_1#6.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 61813132;4193 ERS1299774 ERX1851928 GENOMIC DN465133W:F1 314153250 2017-01-11 SC_RUN_21127_1#6 88 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788205/21127_1#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788205/21127_1#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#6 ERR1202151 SC_EXP_17870_7#81 463 dce11a8f86fe62d2e7f0d8c64cd09679;45c45000f853fd9e84fd370143078aae 1313 1dec52403b2d94bb57e45282662b85a0;1cc639b4bf104997416afa8d9fc84cb2 SAMEA3389365 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202151/ERR1202151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202151/ERR1202151_2.fastq.gz 2115898 WGS GPS_MW_BND1DB-sc-2295840 RANDOM 40254088;41642601 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202151/ERR1202151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/001/ERR1202151/ERR1202151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202151/17870_7#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202151/17870_7#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202151/ERR1202151_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/001/ERR1202151/ERR1202151_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202151/17870_7#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202151/17870_7#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 59536612;3612 ERS725468 ERX1274393 GENOMIC 14978284 264487250 2016-01-12 SC_RUN_17870_7#81 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202151/17870_7#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202151/17870_7#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#81 ERR1065955 SC_EXP_17175_4#36 467 5643dce0c5810307caf52a3ef38e36ca;ea8855a7bb934dba651674c60b6808b4 1313 6e8f901f0d7c8de0578d5cb1c9718606;6feefa02960c4e0976d77b853be79510 SAMEA3353420 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065955/ERR1065955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065955/ERR1065955_2.fastq.gz 4868424 WGS GPS_ZA_carriage_SP1461-sc-2278020 RANDOM 89320790;92722486 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065955/ERR1065955_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065955/ERR1065955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065955/17175_4#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065955/17175_4#36.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065955/ERR1065955_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065955/ERR1065955_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065955/17175_4#36.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065955/17175_4#36.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 133104916;7905 ERS707775 ERX1146105 GENOMIC 14436337 608553000 2015-10-13 SC_RUN_17175_4#36 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065955/17175_4#36.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065955/17175_4#36.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_4#36 ERR1066240 SC_EXP_17175_7#47 468 02b39eec6e29345f945372d76586f76a;b5f833f181465ae9cabddfb28bbfe281 1313 26e6e6e6e3a7394cbf2d8a631b688860;7214762a681b9a56c47e9fa0787b4d9e SAMEA3353993 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066240/ERR1066240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066240/ERR1066240_2.fastq.gz 5003664 WGS GPS_ZA_2840-sc-2278599 RANDOM 94229011;97608805 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066240/ERR1066240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1066240/ERR1066240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066240/17175_7#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066240/17175_7#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066240/ERR1066240_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1066240/ERR1066240_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066240/17175_7#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066240/17175_7#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 146338630;8185 ERS708348 ERX1146390 GENOMIC 14427496 625458000 2015-10-13 SC_RUN_17175_7#47 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066240/17175_7#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066240/17175_7#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_7#47 ERR1065910 SC_EXP_17150_6#84 464 55219794b595befb4efdef8f7235c337;2922970a19d458667ee205e063c3bc41 1313 f20e61924d2923dfd945b95f7d632949;f2d4ba58f6802a8583b0988e8dd31f6c SAMEA3354239 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065910/ERR1065910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065910/ERR1065910_2.fastq.gz 4533696 WGS GPS_ZA_3039-sc-2278847 RANDOM 87316601;86132882 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065910/ERR1065910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065910/ERR1065910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065910/17150_6#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065910/17150_6#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065910/ERR1065910_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065910/ERR1065910_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065910/17150_6#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065910/17150_6#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 132671010;7395 ERS708594 ERX1146060 GENOMIC 14438202 566712000 2015-10-13 SC_RUN_17150_6#84 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065910/17150_6#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065910/17150_6#84.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#84 ERR1065822 SC_EXP_17150_5#89 460 dacb1eae8482c2aa33a70972b608fdee;8e42cd51c487eeead8d43bd2311c9bc9 1313 af3bc26a5151a9624b7949405cee157d;25636ec755011b4100f26534efd31cac SAMEA3353891 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065822/ERR1065822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065822/ERR1065822_2.fastq.gz 6142224 WGS GPS_ZA_carriage_SP1863-sc-2278495 RANDOM 116189894;117385361 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065822/ERR1065822_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065822/ERR1065822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065822/17150_5#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065822/17150_5#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065822/ERR1065822_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065822/ERR1065822_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065822/17150_5#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065822/17150_5#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 184033326;10074 ERS708246 ERX1145972 GENOMIC 14423207 767778000 2015-10-13 SC_RUN_17150_5#89 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065822/17150_5#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065822/17150_5#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#89 ERR1065808 SC_EXP_17150_5#75 460 d38801632a8144f2440973e337fcf44e;7f2986781ad12b4e05993c110c30fc98 1313 00473a2e5fc36f80ea0701de5ef624d8;222e8464c87f0dedb98c824f22fed674 SAMEA3353864 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065808/ERR1065808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065808/ERR1065808_2.fastq.gz 5626712 WGS GPS_ZA_carriage_SP1853-sc-2278468 RANDOM 112903154;109024405 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065808/ERR1065808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1065808/ERR1065808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065808/17150_5#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065808/17150_5#75.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065808/ERR1065808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1065808/ERR1065808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065808/17150_5#75.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065808/17150_5#75.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 173185897;9234 ERS708219 ERX1145958 GENOMIC 14423229 703339000 2015-10-13 SC_RUN_17150_5#75 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065808/17150_5#75.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065808/17150_5#75.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_5#75 ERR1065432 SC_EXP_17138_3#42 472 4dcd1b863a90ad47b17798fe69a466d0;46850a1fb8f8bf7d66b896c5413d9576 1313 732b14a3ea3b1af6e9edd4bdf5641141;92eb15fa0315c5e2ee9c98cffe7b4a19 SAMEA3354168 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065432/ERR1065432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065432/ERR1065432_2.fastq.gz 4786546 WGS GPS_ZA_carriage_SP1935-sc-2278776 RANDOM 102213746;100248286 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065432/ERR1065432_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065432/ERR1065432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065432/17138_3#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065432/17138_3#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065432/ERR1065432_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065432/ERR1065432_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065432/17138_3#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065432/17138_3#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 154050866;7752 ERS708523 ERX1145582 GENOMIC 14438270 598318250 2015-10-13 SC_RUN_17138_3#42 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065432/17138_3#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065432/17138_3#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#42 ERR1065430 SC_EXP_17138_3#40 472 8f117b75d1d87faac3a104ca5ceb4d75;062cd91fefc59497c07b57047d94312d 1313 6557cf83743770c27dcce1073b941c4a;ee5601c2a5a6dc5ef6be26edc1a5d1dc SAMEA3354164 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065430/ERR1065430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065430/ERR1065430_2.fastq.gz 5623940 WGS GPS_ZA_3057-sc-2278772 RANDOM 115325110;112122129 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065430/ERR1065430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/000/ERR1065430/ERR1065430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065430/17138_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065430/17138_3#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065430/ERR1065430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/000/ERR1065430/ERR1065430_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065430/17138_3#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065430/17138_3#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 167628698;9285 ERS708519 ERX1145580 GENOMIC 14438341 702992500 2015-10-13 SC_RUN_17138_3#40 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065430/17138_3#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065430/17138_3#40.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#40 ERR1065552 SC_EXP_17138_4#69 472 7e5b2359f19279d471f524138afd9114;b2a866984c8cd4ec73c310c307b4dd9a 1313 84355b7971ad68a37b128ca1936d577e;5c9c025a1d569a74adab1932091b1547 SAMEA3354351 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065552/ERR1065552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065552/ERR1065552_2.fastq.gz 4360678 WGS GPS_ZA_1413_R1-sc-2279015 RANDOM 82870979;86728368 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065552/ERR1065552_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/002/ERR1065552/ERR1065552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065552/17138_4#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065552/17138_4#69.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065552/ERR1065552_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/002/ERR1065552/ERR1065552_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065552/17138_4#69.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065552/17138_4#69.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 128633951;7135 ERS708706 ERX1145702 GENOMIC 14468609 545084750 2015-10-13 SC_RUN_17138_4#69 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065552/17138_4#69.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065552/17138_4#69.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_4#69 ERR1065405 SC_EXP_17138_3#15 472 a8f15354ffd1af5d9059d2388a5ef526;486fd9d860fbade1f3a181d09fa0f255 1313 c95c30bd9c0444c444bedfa71ce3dad4;f02c2e0cd05a206bea2112d1e761bc14 SAMEA3354287 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065405/ERR1065405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065405/ERR1065405_2.fastq.gz 5638390 WGS GPS_ZA_3054-sc-2278895 RANDOM 117450533;114982644 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065405/ERR1065405_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065405/ERR1065405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065405/17138_3#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065405/17138_3#15.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065405/ERR1065405_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065405/ERR1065405_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065405/17138_3#15.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065405/17138_3#15.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 177477705;9230 ERS708642 ERX1145555 GENOMIC 14438326 704798750 2015-10-13 SC_RUN_17138_3#15 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065405/17138_3#15.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065405/17138_3#15.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17138_3#15 ERR1065385 SC_EXP_17059_8#89 447 e9263803851790a643732614492836fc;8fc8edbffe257d2550a237ce31be2c99 1313 d1f856f3f64e5755692314fda9095a85;3246cdfc9a08ee677a1f2145a65f419f SAMEA3353531 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065385/ERR1065385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065385/ERR1065385_2.fastq.gz 5020336 WGS GPS_ZA_carriage_SP1417-sc-2278131 RANDOM 86863240;91060004 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065385/ERR1065385_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065385/ERR1065385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065385/17059_8#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065385/17059_8#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065385/ERR1065385_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065385/ERR1065385_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065385/17059_8#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065385/17059_8#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 143520938;8223 ERS707886 ERX1145535 GENOMIC 14406194 627542000 2015-10-13 SC_RUN_17059_8#89 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065385/17059_8#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065385/17059_8#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_8#89 ERR1065267 SC_EXP_17059_7#63 465 d28624074e8cec0404a8c14c20d450bb;61bdbe44b85234b16b7ca330e422ea88 1313 acd27ae6ebceaef37ebcbdd9af7396bd;2cd0c8fcf3b2ce1acba8386b7c47cc4d SAMEA3353289 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065267/ERR1065267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065267/ERR1065267_2.fastq.gz 5045892 WGS GPS_ZA_carriage_SP1297-sc-2277887 RANDOM 92743090;96331893 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065267/ERR1065267_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/007/ERR1065267/ERR1065267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065267/17059_7#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065267/17059_7#63.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065267/ERR1065267_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/007/ERR1065267/ERR1065267_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065267/17059_7#63.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065267/17059_7#63.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 153491258;8221 ERS707644 ERX1145417 GENOMIC 14406361 630736500 2015-10-13 SC_RUN_17059_7#63 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065267/17059_7#63.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065267/17059_7#63.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17059_7#63 ERR980296 SC_EXP_16288_8#23 202 8370c2de0fc6dc0fb3041bba8352b573;935eaa259626df65bc31c8a1d45e5789 1313 9825022ba1fd09dce70f5f61d28e4dbf;95cb8b5441f5ece269828ddbad2e25d0 SAMEA3232789 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980296/ERR980296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980296/ERR980296_2.fastq.gz 4395024 WGS GPS_NP_1314-sc-2205701 RANDOM 150050543;146669210 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980296/ERR980296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980296/ERR980296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980296/16288_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980296/16288_8#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980296/ERR980296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980296/ERR980296_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980296/16288_8#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980296/16288_8#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 239785393;7000 ERS654000 ERX1057168 GENOMIC 13301823 439502400 2015-08-12 SC_RUN_16288_8#23 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980296/16288_8#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980296/16288_8#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#23 ERR980294 SC_EXP_16288_8#21 202 a76a381afa86e4139812f25cbadd88e0;f0defe93a5ea70ead07f2b01da1ae7ed 1313 77efe885c160262f4d157651bcaa4182;4279f22ca8b3635752ede186212e7b7e SAMEA3232787 2015-08-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980294/ERR980294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980294/ERR980294_2.fastq.gz 4782118 WGS GPS_NP_1308-sc-2205699 RANDOM 163900449;159596292 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980294/ERR980294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR980/ERR980294/ERR980294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980294/16288_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980294/16288_8#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980294/ERR980294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR980/ERR980294/ERR980294_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980294/16288_8#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR980/ERR980294/16288_8#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 260110638;7626 ERS653998 ERX1057166 GENOMIC 13301799 478211800 2015-08-12 SC_RUN_16288_8#21 68 fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980294/16288_8#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR980/ERR980294/16288_8#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA465237 16288_8#21 ERR925396 SC_EXP_15995_2#186 219 8b7638fe8d0d7dc1aa2f6571874868b4;01d07f061c4dd4b36cf12ffcc67d549d 1313 f6a31b1936f65b3501c6b3fa7179b256;bb2bc8f1e10d7a39943c17ff5696af06 SAMEA3209116 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925396/ERR925396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925396/ERR925396_2.fastq.gz 1850402 WGS GPS_ZA_carriage_SP1069-sc-2205254 RANDOM 58973218;61028018 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925396/ERR925396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925396/ERR925396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925396/15995_2#186.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925396/15995_2#186.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925396/ERR925396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925396/ERR925396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925396/15995_2#186.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925396/15995_2#186.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 97342486;3106 ERS640218 ERX1004671 GENOMIC 13301234 185040200 2015-06-23 SC_RUN_15995_2#186 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925396/15995_2#186.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925396/15995_2#186.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#186 ERR046057 SC_EXP_6512_1#10 204 9880c56ffe99a11494f76415feb5ac5b 1313 19d3881c2df6e7532f15260111f99f8d;10df8777f247e5a458c4800d7b51c72e SAMEA1026624 2011-09-20 ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046057/ERR046057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046057/ERR046057_2.fastq.gz 6589246 WGS UoS3042-sc-2011-02-14-1078286 RANDOM 368527352;374295392 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046057/ERR046057_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR046/ERR046057/ERR046057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046057/6512_1#10.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046057/ERR046057_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR046/ERR046057/ERR046057_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR046/ERR046057/6512_1#10.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 941425347 ERS023232 ERX023119 GENOMIC 2734211 988386900 2011-09-20 SC_RUN_6512_1#10 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR046/ERR046057/6512_1#10.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA051718 6512_1#10 ERR045374 SC_EXP_6486_6#3 232 031d3c809f2bb860ac8cb49d13c8a010 1313 a007bdae54bbd158088a9baae0eb892e;bec862e33df3e60ccd5c14c960f92ef7 SAMEA1026665 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045374/ERR045374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045374/ERR045374_2.fastq.gz 9213932 WGS UoS4350-sc-2011-02-14-1078463 RANDOM 496070308;497062214 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045374/ERR045374_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045374/ERR045374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045374/6486_6#3.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045374/ERR045374_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045374/ERR045374_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045374/6486_6#3.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1247202206 ERS023409 ERX022436 GENOMIC 2744978 1382089800 2011-09-14 SC_RUN_6486_6#3 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045374/6486_6#3.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_6#3 ERR069769 SC_EXP_6999_4#18 244 86054adabc96d1589185977751a44607 1313 2471688a498764d1ba52f14fdaacbe99;2cdbc5eb0a871ad184235baad75d5613 SAMEA1032529 2012-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069769/ERR069769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069769/ERR069769_2.fastq.gz 4898329 WGS 132571-sc-2011-08-01T09:45:24Z-1250140 RANDOM 281121510;286950955 BAM Streptococcus pneumoniae Population genomics of Streptococcus pneumoniae in the presence of vaccine and antimicrobial treatment ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069769/ERR069769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR069/ERR069769/ERR069769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069769/6999_4#18.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069769/ERR069769_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR069/ERR069769/ERR069769_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR069/ERR069769/6999_4#18.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2632 ERP000809 728798185 ERS044075 ERX047622 GENOMIC 3736991 734749350 2012-01-19 SC_RUN_6999_4#18 67 fasp.sra.ebi.ac.uk:/vol1/run/ERR069/ERR069769/6999_4#18.bam Population_genomics_of_Streptococcus_pneumoniae_in_the_presence_of_vaccine_and_antimicrobial_treatment-sc-2011-07-31T19:49:33Z-1922 Illumina HiSeq 2000 paired end sequencing ERA081633 Streptococcus pneumoniae ERR925386 SC_EXP_15995_2#176 219 315cc59ef8eb9ad60f9137a510577430;bd4da81eeb12ab263a9053d3fba3a42b 1313 2b27c8f0c24bb4ab976b00cbc581c56b;13cdc4598f31c989457bfbeef3865cf0 SAMEA3209106 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925386/ERR925386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925386/ERR925386_2.fastq.gz 1727606 WGS GPS_ZA_carriage_SP1139-sc-2205244 RANDOM 56430105;58993680 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925386/ERR925386_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925386/ERR925386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925386/15995_2#176.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925386/15995_2#176.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925386/ERR925386_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925386/ERR925386_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925386/15995_2#176.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925386/15995_2#176.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 93528147;2823 ERS640208 ERX1004661 GENOMIC 13301304 172760600 2015-06-23 SC_RUN_15995_2#176 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925386/15995_2#176.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925386/15995_2#176.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#176 ERR045361 SC_EXP_6486_5#12 228 4033d766ab09f2f578e85e866903a8f9 1313 2513ab9a0e137d2f169ca2421f6938d3;f3cffb2155512a2ede2c7053e69d35d7 SAMEA1026523 2011-09-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045361/ERR045361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045361/ERR045361_2.fastq.gz 8114187 WGS UoS4311-sc-2011-02-14-1078450 RANDOM 426002913;434804655 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045361/ERR045361_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR045/ERR045361/ERR045361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045361/6486_5#12.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045361/ERR045361_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR045/ERR045361/ERR045361_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR045/ERR045361/6486_5#12.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 1099827851 ERS023396 ERX022423 GENOMIC 2744965 1217128050 2011-09-14 SC_RUN_6486_5#12 62 fasp.sra.ebi.ac.uk:/vol1/run/ERR045/ERR045361/6486_5#12.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA050694 6486_5#12 ERR044876 SC_EXP_6470_3#19 187 a3258a713bc95dc39a958a06acc53c5e 1313 b7b8b660151e5b0c26bb818d4f1df652;8842d00628597023ceee081669ffe407 SAMEA1026552 2011-09-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044876/ERR044876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044876/ERR044876_2.fastq.gz 6048936 WGS UoS0080-sc-2011-02-14-1078079 RANDOM 300794905;315260743 BAM Streptococcus pneumoniae Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044876/ERR044876_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR044/ERR044876/ERR044876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044876/6470_3#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044876/ERR044876_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR044/ERR044876/ERR044876_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR044/ERR044876/6470_3#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2417 ERP000513 809450794 ERS023024 ERX021984 GENOMIC 2719106 907340400 2011-09-06 SC_RUN_6470_3#19 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR044/ERR044876/6470_3#19.bam Whole_genome_sequencing_of_carried_Streptococcus_pneumoniae_during_the_implementation_of_pneumococcal_conjugate_vaccines_in_the_UK-sc-2011-02-14 Illumina HiSeq 2000 paired end sequencing ERA049988 6470_3#19 ERR1065891 SC_EXP_17150_6#65 464 ebd6aa38cfeed0b2f5d04466b421996e;37f26aa1e252cb980fe405ec044f324a 1313 070d8ba2b916aa2b2c0148ea1f7e4dfe;cc1f06ab38f55368a75f34122960e8cb SAMEA3354203 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065891/ERR1065891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065891/ERR1065891_2.fastq.gz 4970580 WGS GPS_ZA_3026-sc-2278811 RANDOM 98553507;92046160 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065891/ERR1065891_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/001/ERR1065891/ERR1065891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065891/17150_6#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065891/17150_6#65.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065891/ERR1065891_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/001/ERR1065891/ERR1065891_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065891/17150_6#65.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065891/17150_6#65.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 146666658;8131 ERS708558 ERX1146041 GENOMIC 14438164 621322500 2015-10-13 SC_RUN_17150_6#65 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065891/17150_6#65.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065891/17150_6#65.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_6#65 ERR925328 SC_EXP_15995_2#118 219 0d87858353efa905ac23b98006bab667;4b1636b317ade1d64a1a8e148d4f371d 1313 da2089648170e5487f09e523baab0cd8;a88c3509f37bc899d4f4dfd1c1ea8052 SAMEA3209048 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925328/ERR925328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925328/ERR925328_2.fastq.gz 2027976 WGS GPS_ZA_carriage_SP1108-sc-2205186 RANDOM 63136731;65846184 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925328/ERR925328_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925328/ERR925328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925328/15995_2#118.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925328/15995_2#118.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925328/ERR925328_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925328/ERR925328_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925328/15995_2#118.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925328/15995_2#118.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 105147319;3428 ERS640150 ERX1004603 GENOMIC 13301273 202797600 2015-06-23 SC_RUN_15995_2#118 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925328/15995_2#118.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925328/15995_2#118.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#118 ERR925332 SC_EXP_15995_2#122 219 a4a7474edf98445ba8a137a95ccead7c;90540ec50ce6fd639cf1d86e8d8f1fdb 1313 57df8feb1df4cdd9feceacec53e949c9;87e9ccaf4f9fa5615966b82a1fc8b844 SAMEA3209052 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925332/ERR925332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925332/ERR925332_2.fastq.gz 2046020 WGS GPS_ZA_carriage_SP1061-sc-2205190 RANDOM 65391147;68023709 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925332/ERR925332_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925332/ERR925332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925332/15995_2#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925332/15995_2#122.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925332/ERR925332_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925332/ERR925332_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925332/15995_2#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925332/15995_2#122.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 108750372;3406 ERS640154 ERX1004607 GENOMIC 13301226 204602000 2015-06-23 SC_RUN_15995_2#122 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925332/15995_2#122.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925332/15995_2#122.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#122 ERR1066188 SC_EXP_17175_6#86 449 bbba732770f41088f9b4970cc72632b3;3ff7d2017904089d9be2fd6887a9b85c 1313 022441bc6f6e116fed1fd8487621fe6f;05a442c3957f5a8fe4b58713b56ac6b5 SAMEA3353892 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066188/ERR1066188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066188/ERR1066188_2.fastq.gz 4895612 WGS GPS_ZA_carriage_SP1791-sc-2278496 RANDOM 86005062;89130744 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066188/ERR1066188_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/008/ERR1066188/ERR1066188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066188/17175_6#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066188/17175_6#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066188/ERR1066188_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/008/ERR1066188/ERR1066188_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066188/17175_6#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1066188/17175_6#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 131636862;7955 ERS708247 ERX1146338 GENOMIC 14427598 611951500 2015-10-13 SC_RUN_17175_6#86 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066188/17175_6#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1066188/17175_6#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17175_6#86 ERR925316 SC_EXP_15995_2#106 219 20a871c83eb36a3eb21dd01beea5c9c8;636d60367470d17989d1b1b16e47cf4f 1313 ab9e83ceb43aebce1f48c35cf661215f;959101df50ef5a9f159e1dd9f43f7500 SAMEA3209036 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925316/ERR925316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925316/ERR925316_2.fastq.gz 2118102 WGS GPS_ZA_carriage_SP1059-sc-2205174 RANDOM 66416764;69026835 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925316/ERR925316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925316/ERR925316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925316/15995_2#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925316/15995_2#106.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925316/ERR925316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925316/ERR925316_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925316/15995_2#106.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925316/15995_2#106.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 110886419;3554 ERS640138 ERX1004591 GENOMIC 13301224 211810200 2015-06-23 SC_RUN_15995_2#106 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925316/15995_2#106.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925316/15995_2#106.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#106 ERR913140 SC_EXP_15873_1#83 206 547c0f93e51e01554b041b102d656617;673106a451b0f627b220fb145ac85868 1313 291a7d29a8ce3abb2d0e0146182bce96;a8e78e15d5409380212b277de2362a07 SAMEA3207183 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913140/ERR913140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913140/ERR913140_2.fastq.gz 5546552 WGS GPS_ZA_carriage_SP510-sc-2192121 RANDOM 177902659;185546260 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913140/ERR913140_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913140/ERR913140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913140/15873_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913140/15873_1#83.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913140/ERR913140_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913140/ERR913140_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913140/15873_1#83.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913140/15873_1#83.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 294890186;8752 ERS639193 ERX992264 GENOMIC 13227568 554655200 2015-06-17 SC_RUN_15873_1#83 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913140/15873_1#83.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913140/15873_1#83.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#83 ERR913089 SC_EXP_15873_1#32 206 edfe3c561f60010715f891b2d6d5a971;1a8e4aa1d2e96f745b55479380ed42ff 1313 a052e0a67513e3625acb93e2808ddc2b;678c9467bf32e4cee74bc8af4e7cde6b SAMEA3207132 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913089/ERR913089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913089/ERR913089_2.fastq.gz 4926226 WGS GPS_ZA_carriage_SP563-sc-2192070 RANDOM 158492295;165847297 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913089/ERR913089_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913089/ERR913089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913089/15873_1#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913089/15873_1#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913089/ERR913089_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913089/ERR913089_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913089/15873_1#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913089/15873_1#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 261993656;7714 ERS639142 ERX992213 GENOMIC 13227621 492622600 2015-06-17 SC_RUN_15873_1#32 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913089/15873_1#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913089/15873_1#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15873_1#32 ERR925224 SC_EXP_15995_2#13 219 eedfafef5b83b2264e257627a582d5a4;6864d761ce66caf076bad075ed2fb0a2 1313 d52efa706bf025274d7b6d5ca39e9869;fc0b4d444766d459c97287a506110292 SAMEA3208944 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925224/ERR925224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925224/ERR925224_2.fastq.gz 1982786 WGS GPS_ZA_carriage_SP1000-sc-2205081 RANDOM 62453334;64610178 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925224/ERR925224_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925224/ERR925224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925224/15995_2#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925224/15995_2#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925224/ERR925224_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925224/ERR925224_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925224/15995_2#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925224/15995_2#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 103704887;3344 ERS640046 ERX1004499 GENOMIC 13301163 198278600 2015-06-23 SC_RUN_15995_2#13 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925224/15995_2#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925224/15995_2#13.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_2#13 ERR913512 SC_EXP_15874_1#32 217 efb290afd10d91ea2437c20bd65c8d93;137ed005fd6371e9bed94f4f28ae4573 1313 4a796eda7a416470125340ea04192556;59c66c1a67fc2bb72ebdd01d12b2064d SAMEA3207037 2015-06-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913512/ERR913512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913512/ERR913512_2.fastq.gz 4746956 WGS GPS_ZA_carriage_SP468-sc-2191974 RANDOM 140669067;149475698 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913512/ERR913512_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR913/ERR913512/ERR913512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913512/15874_1#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913512/15874_1#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913512/ERR913512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR913/ERR913512/ERR913512_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913512/15874_1#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR913/ERR913512/15874_1#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232261991;7517 ERS639047 ERX992636 GENOMIC 13242136 474695600 2015-06-17 SC_RUN_15874_1#32 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913512/15874_1#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR913/ERR913512/15874_1#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA446943 15874_1#32 ERR908875 SC_EXP_15841_1#26 206 f19c9778450b1b187164c379c3b72816;848f818425c1e4977f419a201675a713 1313 17a09e394cc4d9f6d26cf3b072e8025f;e76ba3842da073220ec1ff4e52f26cb3 SAMEA3206790 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908875/ERR908875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908875/ERR908875_2.fastq.gz 4915186 WGS GPS_ZA_carriage_SP206-sc-2191724 RANDOM 157445695;162507797 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908875/ERR908875_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR908/ERR908875/ERR908875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908875/15841_1#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908875/15841_1#26.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908875/ERR908875_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR908/ERR908875/ERR908875_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908875/15841_1#26.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR908/ERR908875/15841_1#26.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256665466;7720 ERS638800 ERX988130 GENOMIC 13227452 491518600 2015-06-09 SC_RUN_15841_1#26 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908875/15841_1#26.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR908/ERR908875/15841_1#26.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_1#26 ERR909216 SC_EXP_15841_4#82 228 345a1595c173d8de7eefa05a9d562005;b9fceca6445d1a833a2a8c07d5a51e0e 1313 1816232e502ad7e913c6b3a42864f616;29b136dd48b21fd46809b8652dd99695 SAMEA3208823 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909216/ERR909216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909216/ERR909216_2.fastq.gz 5075910 WGS GPS_ZA_carriage_SP783-sc-2204958 RANDOM 163855950;171619915 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909216/ERR909216_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909216/ERR909216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909216/15841_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909216/15841_4#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909216/ERR909216_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909216/ERR909216_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909216/15841_4#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909216/15841_4#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272849426;8084 ERS639925 ERX988471 GENOMIC 13267927 507591000 2015-06-09 SC_RUN_15841_4#82 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909216/15841_4#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909216/15841_4#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#82 ERR909215 SC_EXP_15841_4#81 228 f063588c933a3570ecf8c702a306dc42;78962a288e3e758c12a40029136f254d 1313 4a762e4618eea04aa960b2342ec0159c;009a55411b044a0ae381ef5fddacc6c0 SAMEA3208822 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909215/ERR909215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909215/ERR909215_2.fastq.gz 5725774 WGS GPS_ZA_carriage_SP771-sc-2204957 RANDOM 181095997;187600200 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909215/ERR909215_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909215/ERR909215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909215/15841_4#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909215/15841_4#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909215/ERR909215_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909215/ERR909215_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909215/15841_4#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909215/15841_4#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 298710922;9120 ERS639924 ERX988470 GENOMIC 13267915 572577400 2015-06-09 SC_RUN_15841_4#81 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909215/15841_4#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909215/15841_4#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#81 ERR909155 SC_EXP_15841_4#21 228 a03b52d3ac90fc8dcd9c3686a3ce0d13;9ca830108ca394bf7908ffc2d40c966f 1313 b798a83cfbb03edf6279a9b2a65448ae;42033d98a6a8ecca367fa75cd5d91ac6 SAMEA3208762 2015-06-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909155/ERR909155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909155/ERR909155_2.fastq.gz 4881652 WGS GPS_ZA_carriage_SP811-sc-2204897 RANDOM 156714365;163423642 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909155/ERR909155_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR909/ERR909155/ERR909155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909155/15841_4#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909155/15841_4#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909155/ERR909155_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR909/ERR909155/ERR909155_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909155/15841_4#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR909/ERR909155/15841_4#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 259411191;7755 ERS639864 ERX988410 GENOMIC 13267955 488165200 2015-06-09 SC_RUN_15841_4#21 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909155/15841_4#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR909/ERR909155/15841_4#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA445373 15841_4#21 ERR876771 SC_EXP_15608_5#74 212 ad9937f88a930868c094fec2e819d8f1;29aa4a41115cb6a1894932444c14b9ef 1313 d3510a71f7db59b95380a03331059d68;e3939c4c6bd0249a1f09ab40ea150ff1 SAMEA3176069 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876771/ERR876771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876771/ERR876771_2.fastq.gz 5378744 WGS GPS_PL_1447_07-sc-2191126 RANDOM 169772017;174908365 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876771/ERR876771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876771/ERR876771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876771/15608_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876771/15608_5#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876771/ERR876771_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876771/ERR876771_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876771/15608_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876771/15608_5#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 278515316;8847 ERS629017 ERX956334 GENOMIC 13030034 537874400 2015-05-12 SC_RUN_15608_5#74 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876771/15608_5#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876771/15608_5#74.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_5#74 ERR876533 SC_EXP_15608_3#8 211 76c6c926acec6a038b8ea1b7b8fcc32d;d9435341bbe5dc3deb10c0c29972da51 1313 e793172585a2d76bef991c45a76944cc;b23a6a2ee4c5e33d3fa8f312fcdb76d9 SAMEA3175757 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876533/ERR876533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876533/ERR876533_2.fastq.gz 5933716 WGS GPS_US_5756_99_R1-sc-2190793 RANDOM 177001804;181528791 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876533/ERR876533_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876533/ERR876533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876533/15608_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876533/15608_3#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876533/ERR876533_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876533/ERR876533_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876533/15608_3#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876533/15608_3#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 286592774;9772 ERS628705 ERX956096 GENOMIC 13024346 593371600 2015-05-12 SC_RUN_15608_3#8 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876533/15608_3#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876533/15608_3#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_3#8 ERR774518 SC_EXP_14936_4#45 220 240725fd5b1bbdd458c056c99830b6af;7954e16c1111738869eadd2acedfae64 1313 c61e41dfaec6949954625077d9a6c027;8124648276c4f8726c9c08c3d9a2eaec SAMEA2814350 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774518/ERR774518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774518/ERR774518_2.fastq.gz 4007306 WGS GPS_ZA_2562-sc-2138144 RANDOM 144360283;146807965 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774518/ERR774518_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774518/ERR774518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774518/14936_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774518/14936_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774518/ERR774518_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774518/ERR774518_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774518/14936_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774518/14936_4#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 241980051;6567 ERS566718 ERX717397 GENOMIC 12347971 400730600 2015-03-03 SC_RUN_14936_4#45 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774518/14936_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774518/14936_4#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14936_4#45 ERR774329 SC_EXP_14913_7#45 228 de8e658c3d71835eb27cbc569af49eea;a8c4a87dd1320c92556a9e65e1cc910c 1313 ac8b5d0f9e5accaa1c621e84e6e2d541;c1a7257b0a4d26ddad2a0dd43d4363d8 SAMEA2814255 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774329/ERR774329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774329/ERR774329_2.fastq.gz 4625436 WGS GPS_ZA_2467-sc-2022768 RANDOM 153470459;161040125 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774329/ERR774329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774329/ERR774329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774329/14913_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774329/14913_7#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774329/ERR774329_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774329/ERR774329_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774329/14913_7#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774329/14913_7#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 257286962;7455 ERS566623 ERX717208 GENOMIC 12357974 462543600 2015-03-03 SC_RUN_14913_7#45 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774329/14913_7#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774329/14913_7#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_7#45 ERR876511 SC_EXP_15608_2#81 215 c0e8ff420dd2d0fbfcae1eadd5566229;29209460daf3bc2bb82c884bf58ac530 1313 1fdbf96685f9f4a35671fb05dee688b2;1db9143956ca8a0de42d56e324ef9b9a SAMEA3175726 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876511/ERR876511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876511/ERR876511_2.fastq.gz 6296934 WGS GPS_US_2477_99_R1-sc-2190775 RANDOM 194873895;200539819 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876511/ERR876511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876511/ERR876511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876511/15608_2#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876511/15608_2#81.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876511/ERR876511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876511/ERR876511_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876511/15608_2#81.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876511/15608_2#81.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 317667847;9900 ERS628674 ERX956074 GENOMIC 13024175 629693400 2015-05-12 SC_RUN_15608_2#81 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876511/15608_2#81.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876511/15608_2#81.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#81 ERR774088 SC_EXP_14913_4#86 230 fc2c5e12e5231fcab4375f201708fa88;293c910da69854c99d8400d549e66dea 1313 217b77b7cc9eed261b08664aa98ac05b;d8bb13cf0f5a6711344bd72b2af8dea3 SAMEA2814201 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774088/ERR774088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774088/ERR774088_2.fastq.gz 4140910 WGS GPS_ZA_2413-sc-2022687 RANDOM 138580236;145216254 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774088/ERR774088_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774088/ERR774088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774088/14913_4#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774088/14913_4#86.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774088/ERR774088_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774088/ERR774088_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774088/14913_4#86.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774088/14913_4#86.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 232267323;6630 ERS566569 ERX716967 GENOMIC 12396051 414091000 2015-03-03 SC_RUN_14913_4#86 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774088/14913_4#86.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774088/14913_4#86.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#86 ERR774029 SC_EXP_14913_4#27 230 e9fc1b53803824523b3467858cbcb808;90f56df974f7b520ac5be3ad8fd4739f 1313 b38cda03e4f1b1e8a4852541ac2f7019;b3c5d4d47953ec0b763fc1e88250c0e0 SAMEA2814061 2015-03-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774029/ERR774029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774029/ERR774029_2.fastq.gz 5004788 WGS GPS_ZA_2354-sc-2022545 RANDOM 167869558;176231155 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774029/ERR774029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR774/ERR774029/ERR774029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774029/14913_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774029/14913_4#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774029/ERR774029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR774/ERR774029/ERR774029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774029/14913_4#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR774/ERR774029/14913_4#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 281863006;7994 ERS566429 ERX716908 GENOMIC 12396008 500478800 2015-03-03 SC_RUN_14913_4#27 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774029/14913_4#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR774/ERR774029/14913_4#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA414356 14913_4#27 ERR742599 SC_EXP_14673_4#3 209 90fe89b4e0ff4457b07d08bc91e08beb;a67695ef7a7967f92de94aa11b730f29 1313 7f7e1b2a541930c7bf422022517a35cf;0fb5e860680abe7052a968803ba46165 SAMEA2796696 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742599/ERR742599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742599/ERR742599_2.fastq.gz 5422536 WGS GPS_US_8579_04-sc-2138678 RANDOM 173488231;179893967 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742599/ERR742599_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742599/ERR742599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742599/14673_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742599/14673_4#3.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742599/ERR742599_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742599/ERR742599_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742599/14673_4#3.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742599/14673_4#3.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285313891;8708 ERS558307 ERX686282 GENOMIC 12061993 542253600 2015-01-27 SC_RUN_14673_4#3 71 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742599/14673_4#3.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742599/14673_4#3.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_4#3 ERR751096 SC_EXP_14723_5#1 250 11a87d9ffd06a4090d80e19df79a4e44;cadf266d37ddc6fd0f0523488dcaf8b7 1313 80003c9fb2d9c5af58c11cda2723ddbe;8f5e4b142c93d2e46b3de490c907e1a3 SAMEA2797492 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751096/ERR751096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751096/ERR751096_2.fastq.gz 7258414 WGS GPS_US_PATH6484-sc-2139485 RANDOM 247812145;247889883 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751096/ERR751096_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751096/ERR751096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751096/14723_5#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751096/14723_5#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751096/ERR751096_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751096/ERR751096_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751096/14723_5#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751096/14723_5#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 412783526;11872 ERS559103 ERX694778 GENOMIC 12123803 725841400 2015-02-03 SC_RUN_14723_5#1 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751096/14723_5#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751096/14723_5#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_5#1 ERR751049 SC_EXP_14723_4#48 213 f1bcf05ba37edd20647c7a080d6550bb;5f6652abf0407e23364e55f0250fb5c5 1313 eb55184a54c0d9bec028bcc0001ce707;0edca0c9dc60fbe1cd253307c18bdbd0 SAMEA2797349 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751049/ERR751049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751049/ERR751049_2.fastq.gz 6185808 WGS GPS_US_PATH5515-sc-2139340 RANDOM 235885982;239807910 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751049/ERR751049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751049/ERR751049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751049/14723_4#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751049/14723_4#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751049/ERR751049_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751049/ERR751049_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751049/14723_4#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751049/14723_4#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 396494826;9692 ERS558960 ERX694731 GENOMIC 12133873 618580800 2015-02-03 SC_RUN_14723_4#48 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751049/14723_4#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751049/14723_4#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_4#48 ERR742557 SC_EXP_14673_3#56 214 73cb5254d3cbd74e7387ada147f3d05f;b44fcdd29f7ab0811e5c3559d9b72936 1313 5aeef4e24bd1f1b33b83c40325384aa0;c4bb157a779f15d8cfa483351a03a8bc SAMEA2796654 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742557/ERR742557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742557/ERR742557_2.fastq.gz 5297232 WGS GPS_US_3694_03-sc-2138635 RANDOM 166601555;173410314 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742557/ERR742557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742557/ERR742557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742557/14673_3#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742557/14673_3#56.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742557/ERR742557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742557/ERR742557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742557/14673_3#56.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742557/14673_3#56.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 273386873;8657 ERS558265 ERX686240 GENOMIC 12061962 529723200 2015-01-27 SC_RUN_14673_3#56 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742557/14673_3#56.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742557/14673_3#56.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#56 ERR742530 SC_EXP_14673_3#28 214 4ab38df65dcaa62d64eed8cb350ee56e;d336632e04d0ba5a3c92740d94a24a8b 1313 53d4727ca7d7919d0b9c8980005c285d;72a489e3a32ae1710a23b5ab90d95b79 SAMEA2796626 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742530/ERR742530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742530/ERR742530_2.fastq.gz 5050118 WGS GPS_US_3114_01-sc-2138607 RANDOM 156540498;162539511 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742530/ERR742530_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742530/ERR742530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742530/14673_3#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742530/14673_3#28.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742530/ERR742530_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742530/ERR742530_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742530/14673_3#28.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742530/14673_3#28.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 256845756;8331 ERS558237 ERX686213 GENOMIC 12061911 505011800 2015-01-27 SC_RUN_14673_3#28 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742530/14673_3#28.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742530/14673_3#28.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_3#28 ERR730840 SC_EXP_14566_5#80 233 4d4b4222eb10964508d290f45a5087fa;213a8b543249a7d2d1326c71dd7ac911 1313 27f79ddd145002c1e1695ef6c18c1b33;422fa32de818a717a0d9374c191f7d34 SAMEA2658813 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730840/ERR730840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730840/ERR730840_2.fastq.gz 3944990 WGS GPS_ZA_1837-sc-2021422 RANDOM 111788996;113486634 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730840/ERR730840_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730840/ERR730840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730840/14566_5#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730840/14566_5#80.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730840/ERR730840_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730840/ERR730840_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730840/14566_5#80.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730840/14566_5#80.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 180189458;6496 ERS508841 ERX674786 GENOMIC 11839018 394499000 2015-01-14 SC_RUN_14566_5#80 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730840/14566_5#80.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730840/14566_5#80.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_5#80 ERR730539 SC_EXP_14555_3#21 227 14a396afbc2bf266d1c084928eaaedc4;35a1d8fdc1bc2c2bb37a27406e2be682 1313 35e73ea42e1955e17ce532324a26744f;4a4758e2717e92e72ebb9da3d84c6696 SAMEA2658302 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730539/ERR730539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730539/ERR730539_2.fastq.gz 5045482 WGS GPS_ZA_1303-sc-2020907 RANDOM 167681879;173257430 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730539/ERR730539_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730539/ERR730539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730539/14555_3#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730539/14555_3#21.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730539/ERR730539_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730539/ERR730539_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730539/14555_3#21.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730539/14555_3#21.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 280561445;8099 ERS508330 ERX674485 GENOMIC 11820732 504548200 2015-01-14 SC_RUN_14555_3#21 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730539/14555_3#21.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730539/14555_3#21.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#21 ERR730613 SC_EXP_14555_4#7 208 f0772b514262e25e3795c8a71e3be005;66bee98379216a236029e6bf4235b70c 1313 6279063e12498205eb58303776c0b076;753428f1dfda45d20fbfde9005de6b83 SAMEA2658927 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730613/ERR730613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730613/ERR730613_2.fastq.gz 4642834 WGS GPS_ZA_2049-sc-2021564 RANDOM 139222323;142710604 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730613/ERR730613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730613/ERR730613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730613/14555_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730613/14555_4#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730613/ERR730613_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730613/ERR730613_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730613/14555_4#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730613/14555_4#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230666316;7526 ERS508955 ERX674559 GENOMIC 11814972 464283400 2015-01-14 SC_RUN_14555_4#7 58 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730613/14555_4#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730613/14555_4#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_4#7 ERR730926 SC_EXP_14566_6#71 237 91225b799472733ac48ccee7327fcc9b;620f8036e36139ab38085ce53e3bf508 1313 9fadb667395b69d5cc00d792878ea9ff;672b9a7c4d256cf45499db8f62736a5e SAMEA2659039 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730926/ERR730926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730926/ERR730926_2.fastq.gz 4398706 WGS GPS_ZA_2018-sc-2021677 RANDOM 131683817;136463189 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730926/ERR730926_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730926/ERR730926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730926/14566_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730926/14566_6#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730926/ERR730926_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730926/ERR730926_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730926/14566_6#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730926/14566_6#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 218334304;7215 ERS509067 ERX674872 GENOMIC 11887180 439870600 2015-01-14 SC_RUN_14566_6#71 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730926/14566_6#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730926/14566_6#71.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_6#71 ERR730688 SC_EXP_14566_4#23 236 12fd00198ef92c9f7bbccd97a7db4ce6;eb67d0a546d79c4d4bffcf445702e747 1313 38ad266ae46180fe47265f6deb55346c;d06f26acf7dc0a6a2197dec2156c09c7 SAMEA2658576 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730688/ERR730688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730688/ERR730688_2.fastq.gz 5124614 WGS GPS_ZA_1590-sc-2021184 RANDOM 152975125;158560516 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730688/ERR730688_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730688/ERR730688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730688/14566_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730688/14566_4#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730688/ERR730688_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730688/ERR730688_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730688/14566_4#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730688/14566_4#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 253752431;8435 ERS508604 ERX674634 GENOMIC 11911811 512461400 2015-01-14 SC_RUN_14566_4#23 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730688/14566_4#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730688/14566_4#23.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#23 ERR633056 SC_EXP_13415_8#33 232 416b9941468aa3e82fa76ffd77e62c00;aef526cdac3683ac7eabf919e3783f73 1313 575d0582ec9dea12829f386f4484ff33;de4b144329a26e08590d154411298498 SAMEA2554240 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633056/ERR633056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633056/ERR633056_2.fastq.gz 4612388 WGS GPS_ZA_1129-sc-1951278 RANDOM 150463969;156120246 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633056/ERR633056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633056/ERR633056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633056/13415_8#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633056/13415_8#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633056/ERR633056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633056/ERR633056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633056/13415_8#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633056/13415_8#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 249999294;7682 ERS464741 ERX589610 GENOMIC 10663310 461238800 2014-09-23 SC_RUN_13415_8#33 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633056/13415_8#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633056/13415_8#33.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#33 ERR730667 SC_EXP_14566_4#2 236 d6bfab4cf08e1656b23d925fd09f182c;2dfb23384b1c51fa2da536b473768063 1313 c8ae7f9dd3609ee1913ec40ca06f07d4;711d3ef4c53df812f66019f43db58b9a SAMEA2658555 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730667/ERR730667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730667/ERR730667_2.fastq.gz 3867004 WGS GPS_ZA_1569-sc-2021163 RANDOM 117555969;121315464 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730667/ERR730667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730667/ERR730667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730667/14566_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730667/14566_4#2.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730667/ERR730667_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730667/ERR730667_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730667/14566_4#2.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730667/14566_4#2.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 194495163;6296 ERS508583 ERX674613 GENOMIC 11911749 386700400 2015-01-14 SC_RUN_14566_4#2 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730667/14566_4#2.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730667/14566_4#2.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14566_4#2 ERR600083 SC_EXP_13414_1#6 292 431715f15946bd8ca034ad60b2fdd83f;3eaa1834b8c55fdbd612bfb1ccd82646 1313 f5cd9d18d874e94d22f2260775c78772;8bdee241c193b8610bad5f01e404d131 SAMEA2521456 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600083/ERR600083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600083/ERR600083_2.fastq.gz 7427510 WGS 2009218203-sc-1946753 RANDOM 243176389;250057694 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600083/ERR600083_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600083/ERR600083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600083/13414_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600083/13414_1#6.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600083/ERR600083_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600083/ERR600083_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600083/13414_1#6.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600083/13414_1#6.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 409568604;12404 ERS454996 ERX556912 GENOMIC 10524169 742751000 2014-09-16 SC_RUN_13414_1#6 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600083/13414_1#6.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600083/13414_1#6.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_1#6 ERR600255 SC_EXP_13414_3#39 223 0a46cb67ae3edf96c38baec07cdf3f4c;c69a781d70524186db555d751cb7fa69 1313 f734f8d26cf38516c3fd86907d55a778;72c10d8b6f7fbad0167fbd2c6d790ad5 SAMEA2521685 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600255/ERR600255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600255/ERR600255_2.fastq.gz 7379960 WGS 2013211441-sc-1946978 RANDOM 234025910;241683636 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600255/ERR600255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600255/ERR600255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600255/13414_3#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600255/13414_3#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600255/ERR600255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600255/ERR600255_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600255/13414_3#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600255/13414_3#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 388087420;12213 ERS455225 ERX557084 GENOMIC 10600667 737996000 2014-09-16 SC_RUN_13414_3#39 82 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600255/13414_3#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600255/13414_3#39.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_3#39 ERR600206 SC_EXP_13414_2#73 233 b4eb48c8917a70de19a422a4f26b0c1c;af0565d674a63d777f2714ca6baba95c 1313 86d25bd16fa668979227a98876378588;40417bbc9afdea0be877141ea03730a3 SAMEA2521624 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600206/ERR600206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600206/ERR600206_2.fastq.gz 4499076 WGS 2012218039-sc-1946916 RANDOM 146204508;150864440 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600206/ERR600206_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600206/ERR600206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600206/13414_2#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600206/13414_2#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600206/ERR600206_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600206/ERR600206_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600206/13414_2#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600206/13414_2#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 242005719;7468 ERS455164 ERX557035 GENOMIC 10600503 449907600 2014-09-16 SC_RUN_13414_2#73 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600206/13414_2#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600206/13414_2#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13414_2#73 ERR570478 SC_EXP_12837_5#79 238 a2eb9712d41baceda0c157a77be5b2de;fa17f9680545c904dc8e3953a1901d6a 1313 5650a54bc50e18b84319381bbd93bae8;c88efdc56ca6850ad0a13c4bdf4e9584 SAMEA2434843 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570478/ERR570478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570478/ERR570478_2.fastq.gz 5599484 WGS SA_GPS_SP305-sc-1895910 RANDOM 183506896;187457214 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570478/ERR570478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570478/ERR570478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570478/12837_5#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570478/12837_5#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570478/ERR570478_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570478/ERR570478_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570478/12837_5#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570478/12837_5#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 303076542;9287 ERS429020 ERX529467 GENOMIC 9993295 559948400 2014-07-28 SC_RUN_12837_5#79 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570478/12837_5#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570478/12837_5#79.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#79 ERR596381 SC_EXP_13353_7#8 259 26ff8bf3dc3ac6d7b32b0af4126457c6;6d17c8dbabac3208eef89e38770f6063 1313 c934a07c4166d58042667e863b1d8904;75d40baa8b8e62bb2a22ba16c91cef92 SAMEA2521749 2014-09-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596381/ERR596381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596381/ERR596381_2.fastq.gz 9153638 WGS 2012218174-sc-1947043 RANDOM 291074136;309528893 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596381/ERR596381_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR596/ERR596381/ERR596381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596381/13353_7#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596381/13353_7#8.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596381/ERR596381_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR596/ERR596381/ERR596381_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596381/13353_7#8.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR596/ERR596381/13353_7#8.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 501491017;14580 ERS455289 ERX553344 GENOMIC 10552918 915363800 2014-09-09 SC_RUN_13353_7#8 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596381/13353_7#8.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR596/ERR596381/13353_7#8.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA356860 13353_7#8 ERR568621 SC_EXP_12837_3#16 231 64186ca613ff147266884cbfaaf535ac;e781ebebdd907c6278b020a3976a87bb 1313 e158907af2a8e9d8fc78baefc6b5909d;708cde09a4575324a5e0d320348b067c SAMEA2434604 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568621/ERR568621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568621/ERR568621_2.fastq.gz 5522282 WGS SA_GPS_SP499-sc-1895669 RANDOM 184323343;186882617 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568621/ERR568621_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568621/ERR568621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568621/12837_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568621/12837_3#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568621/ERR568621_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568621/ERR568621_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568621/12837_3#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568621/12837_3#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 307276143;8838 ERS428781 ERX527610 GENOMIC 9986375 552228200 2014-07-23 SC_RUN_12837_3#16 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568621/12837_3#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568621/12837_3#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#16 ERR568650 SC_EXP_12837_3#47 231 8768571e11a02755755e531afa2fff97;511faa6f8da2d6e33021be339e0286cc 1313 6303b5810efeb48b1136c2bc939b06d0;a8217955ba9e8b7e156040dfe98991c7 SAMEA2434635 2014-07-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568650/ERR568650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568650/ERR568650_2.fastq.gz 5203826 WGS SA_GPS_SP530-sc-1895700 RANDOM 166543772;169953895 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568650/ERR568650_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR568/ERR568650/ERR568650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568650/12837_3#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568650/12837_3#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568650/ERR568650_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR568/ERR568650/ERR568650_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568650/12837_3#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR568/ERR568650/12837_3#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 275818698;8619 ERS428812 ERX527639 GENOMIC 9986367 520382600 2014-07-23 SC_RUN_12837_3#47 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568650/12837_3#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR568/ERR568650/12837_3#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA335046 12837_3#47 ERR554854 SC_EXP_12673_6#23 221 7cc96aaf30353d1d9ee43f58d696860c;ea5bf6a3becbe2536266802e162eaccc 1313 6ced52dfb3025b7b8419f2e6eb5ab074;84aa5266ed5a2645a4c41d987ef1bbff SAMEA2382568 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554854/ERR554854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554854/ERR554854_2.fastq.gz 5183606 WGS 2111269-sc-1869813 RANDOM 167805763;190320080 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554854/ERR554854_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554854/ERR554854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554854/12673_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554854/12673_6#23.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554854/ERR554854_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554854/ERR554854_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554854/12673_6#23.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554854/12673_6#23.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 294359777;8657 ERS408893 ERX513923 GENOMIC 9798971 518360600 2014-07-02 SC_RUN_12673_6#23 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554854/12673_6#23.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554854/12673_6#23.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_6#23 ERR505544 SC_EXP_12291_1#87 213 139f04adb6c0e2fd17491c75825b4d6f;3b9c06e24bb83f6784f5f262212dd978 1313 b6241d9ed61768b600e33dece568c983;a7df5f1c9e599ad203e594107061f00a SAMEA2335748 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505544/ERR505544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505544/ERR505544_2.fastq.gz 4596128 WGS PATH2739-sc-1810673 RANDOM 142281421;148445264 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505544/ERR505544_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505544/ERR505544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505544/12291_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505544/12291_1#87.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505544/ERR505544_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505544/ERR505544_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505544/12291_1#87.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505544/12291_1#87.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 235207720;7531 ERS393942 ERX470901 GENOMIC 9441178 459612800 2014-05-19 SC_RUN_12291_1#87 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505544/12291_1#87.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505544/12291_1#87.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_1#87 ERR505831 SC_EXP_12291_5#29 230 607fee8ddca56ca9bcec6984b8daccf5;b45d09dd59d73690d56ec44d071dfea6 1313 0920ff32d12edf665194f3de39525068;c345ada46af7e4dcea3dc1d0b00b1d01 SAMEA2336051 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505831/ERR505831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505831/ERR505831_2.fastq.gz 4737872 WGS 4464_99-sc-1810980 RANDOM 140129767;146506359 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505831/ERR505831_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505831/ERR505831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505831/12291_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505831/12291_5#29.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505831/ERR505831_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505831/ERR505831_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505831/12291_5#29.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505831/12291_5#29.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 230685090;7853 ERS394245 ERX471188 GENOMIC 9446427 473787200 2014-05-19 SC_RUN_12291_5#29 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505831/12291_5#29.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505831/12291_5#29.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#29 ERR502546 SC_EXP_12273_1#90 250 cfc43788fc38ed205734bdf332fcd18e;0e4b2b8522b19138b73311bea398b09c 1313 1fdb324e933f4166056c72a540a09dc1;f8dae7e635d1e5da7f4c4314e857d8fe SAMEA2238755 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502546/ERR502546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502546/ERR502546_2.fastq.gz 3978988 WGS 2100262-sc-2013-11-05T12:01:53Z-1750118 RANDOM 109607246;115177970 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502546/ERR502546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR502/ERR502546/ERR502546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502546/12273_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502546/12273_1#90.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR502/ERR502546/ERR502546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR502/ERR502546/ERR502546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502546/12273_1#90.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR502/ERR502546/12273_1#90.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 180111812;6629 ERS367567 ERX467903 GENOMIC 9341047 397898800 2014-05-12 SC_RUN_12273_1#90 fasp.sra.ebi.ac.uk:/vol1/run/ERR502/ERR502546/12273_1#90.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR502/ERR502546/12273_1#90.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA309978 12273_1#90 ERR501460 SC_EXP_12290_2#1 221 e0d1059af7daa9cbd1e6cf97fb51d2ba;ab2f8f4f9053c5b5f2f886e81efeed35 1313 3130a770ec45863d72ce5102b906d94a;cd8901d34a93f1dd054a3d26875102d9 SAMEA2336203 2014-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501460/ERR501460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501460/ERR501460_2.fastq.gz 4473980 WGS 2010210016-sc-1811135 RANDOM 134069274;144146692 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501460/ERR501460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR501/ERR501460/ERR501460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501460/12290_2#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501460/12290_2#1.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501460/ERR501460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR501/ERR501460/ERR501460_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501460/12290_2#1.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR501/ERR501460/12290_2#1.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 225900439;7370 ERS394397 ERX466817 GENOMIC 9467277 447398000 2014-05-12 SC_RUN_12290_2#1 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501460/12290_2#1.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR501/ERR501460/12290_2#1.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA309970 12290_2#1 ERR461268 SC_EXP_11860_7#79 206 e9a4e3316a859dd014442c9b2fe7b0ef;8ffa32befd5282088d25dc4da681db9d 1313 2c790cf569eafb642e80169b5134c1d5;4a49d31b17e4db8e5be676c028ce7b9d SAMEA2239118 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461268/ERR461268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461268/ERR461268_2.fastq.gz 4316956 WGS 2000223-sc-2013-11-05T12:08:13Z-1750488 RANDOM 137087343;145420224 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461268/ERR461268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461268/ERR461268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461268/11860_7#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461268/11860_7#79.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461268/ERR461268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461268/ERR461268_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461268/11860_7#79.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461268/11860_7#79.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 229017698;7138 ERS367930 ERX427609 GENOMIC 9014957 431695600 2014-03-18 SC_RUN_11860_7#79 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461268/11860_7#79.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461268/11860_7#79.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_7#79 ERR461751 SC_EXP_11861_5#12 221 0ac3276efc6ace7d28dd9be7c1812fbc;0526db3e87591f3559542adad23ac58e 1313 1c84f13e336b9a05e0ceb462f9d3d2ca;e1cef605ae632f2485944ad006eab839 SAMEA2239239 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461751/ERR461751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461751/ERR461751_2.fastq.gz 4295802 WGS 2010827-sc-2013-11-05T12:10:20Z-1750611 RANDOM 127970862;134354623 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461751/ERR461751_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461751/ERR461751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461751/11861_5#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461751/11861_5#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461751/ERR461751_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461751/ERR461751_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461751/11861_5#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461751/11861_5#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 210979203;7163 ERS368051 ERX428092 GENOMIC 9017852 429580200 2014-03-18 SC_RUN_11861_5#12 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461751/11861_5#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461751/11861_5#12.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#12 ERR461797 SC_EXP_11861_5#60 221 c355952275e40ddf83901321c82bab42;b75fae73a52f3424fcd8d357f32ab137 1313 76ae7ab268ab5257d622341c65229dde;7c2af8705602f6ba97fd5226910f2bf5 SAMEA2239285 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461797/ERR461797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461797/ERR461797_2.fastq.gz 3853922 WGS 2020051-sc-2013-11-05T12:11:05Z-1750658 RANDOM 116297449;122283880 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461797/ERR461797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461797/ERR461797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461797/11861_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461797/11861_5#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461797/ERR461797_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461797/ERR461797_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461797/11861_5#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461797/11861_5#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 192000010;6428 ERS368097 ERX428138 GENOMIC 9017858 385392200 2014-03-18 SC_RUN_11861_5#60 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461797/11861_5#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461797/11861_5#60.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#60 ERR461783 SC_EXP_11861_5#46 221 c022c720422b2929d3a8d3cfd83adaff;cfca85e3f8a37e9a19f9eb8629b943a5 1313 dd36159136618336258e0956da368e9f;c55b84ac38a0ff28229061e7b60a67b5 SAMEA2239271 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461783/ERR461783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461783/ERR461783_2.fastq.gz 4323298 WGS 2012311-sc-2013-11-05T12:10:52Z-1750643 RANDOM 128549139;134826138 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461783/ERR461783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461783/ERR461783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461783/11861_5#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461783/11861_5#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461783/ERR461783_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461783/ERR461783_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461783/11861_5#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461783/11861_5#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 212934513;7198 ERS368083 ERX428124 GENOMIC 9017880 432329800 2014-03-18 SC_RUN_11861_5#46 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461783/11861_5#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461783/11861_5#46.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11861_5#46 ERR496938 SC_EXP_12216_4#89 250 913b1670140aadae08bf4593f9bfc973;8e01452267a77340bf697c80eb62304c 1313 e442ef03e2d044d786d1137391eed98b;5c9b2d4d0890bdc6850830e0815ebeee SAMEA2238849 2014-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496938/ERR496938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496938/ERR496938_2.fastq.gz 4528008 WGS 2104318-sc-2013-11-05T12:03:26Z-1750213 RANDOM 146868123;151118413 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496938/ERR496938_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR496/ERR496938/ERR496938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496938/12216_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496938/12216_4#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR496/ERR496938/ERR496938_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR496/ERR496938/ERR496938_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496938/12216_4#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR496/ERR496938/12216_4#89.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 243042240;7529 ERS367661 ERX462354 GENOMIC 9399835 452800800 2014-05-06 SC_RUN_12216_4#89 fasp.sra.ebi.ac.uk:/vol1/run/ERR496/ERR496938/12216_4#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR496/ERR496938/12216_4#89.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA307756 12216_4#89 ERR460198 SC_EXP_11893_8#12 250 a1882cc0ce8f713dd580f201e87829cc;ffaaf3589c0fdb7fbcd48adbf902d326 1313 3dd7e83c2010e7094a52c3b8801b4ba5;6760022008974987ad361d1ff45e0637 SAMEA2203782 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460198/ERR460198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460198/ERR460198_2.fastq.gz 7200428 WGS 2009215889-sc-2013-10-09T11:49:20Z-1712371 RANDOM 245266730;248927539 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460198/ERR460198_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR460/ERR460198/ERR460198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460198/11893_8#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460198/11893_8#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460198/ERR460198_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR460/ERR460198/ERR460198_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460198/11893_8#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR460/ERR460198/11893_8#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 412387296;11975 ERS356286 ERX426539 GENOMIC 9028949 720042800 2014-03-18 SC_RUN_11893_8#12 fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460198/11893_8#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR460/ERR460198/11893_8#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA294544 11893_8#12 ERR714637 SC_EXP_14412_2#5 223 ccfabe9dafd773bad937ee6d5a9e6986;ea3e8418ef73c966bbc4c53338ec61bb 1313 8ff4220a144102b94fc6c2655cf123ee;99bf39edbf86e9e64e07ec0022c3adad SAMEA2658843 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714637/ERR714637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714637/ERR714637_2.fastq.gz 4806148 WGS GPS_ZA_1857-sc-2021454 RANDOM 160287207;162318670 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714637/ERR714637_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714637/ERR714637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714637/14412_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714637/14412_2#5.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714637/ERR714637_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714637/ERR714637_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714637/14412_2#5.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714637/14412_2#5.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 263814779;8125 ERS508871 ERX658559 GENOMIC 11883003 480614800 2015-01-08 SC_RUN_14412_2#5 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714637/14412_2#5.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714637/14412_2#5.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#5 ERR714546 SC_EXP_14412_1#9 235 b9ed3ed1b5f83f6e48aee62600efc161;26a2920989d828053ec0eccedcb775c2 1313 2dd4094b4246ef838293c12fe6cf2a28;708c7e62ea80040d24015f29910ec546 SAMEA2658605 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714546/ERR714546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714546/ERR714546_2.fastq.gz 5777526 WGS GPS_ZA_1671-sc-2021213 RANDOM 200627697;203233177 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714546/ERR714546_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714546/ERR714546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714546/14412_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714546/14412_1#9.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714546/ERR714546_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714546/ERR714546_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714546/14412_1#9.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714546/14412_1#9.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 329599054;9677 ERS508633 ERX658468 GENOMIC 11839023 577752600 2015-01-08 SC_RUN_14412_1#9 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714546/14412_1#9.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714546/14412_1#9.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#9 ERR662347 SC_EXP_13710_1#31 186 0eb4bc0bf6d10b15c8f04034c63e0d75;8278d7e5eb749cd138731cd7c5636638 1313 50bc3f853648d685bb588914deb8ce15;4f36f9d083b494382c056112c14d0a3a SAMEA2521809 2014-10-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662347/ERR662347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662347/ERR662347_2.fastq.gz 5618644 WGS 2012219787-sc-1947103 RANDOM 179760769;185742850 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662347/ERR662347_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR662/ERR662347/ERR662347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662347/13710_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662347/13710_1#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662347/ERR662347_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR662/ERR662347/ERR662347_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662347/13710_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR662/ERR662347/13710_1#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 302394102;9155 ERS455349 ERX618623 GENOMIC 11100417 561864400 2014-10-28 SC_RUN_13710_1#31 64 fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662347/13710_1#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR662/ERR662347/13710_1#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA372353 13710_1#31 ERR714656 SC_EXP_14412_2#24 223 b82ef6f365f23a90b54a55fc9d206a2a;8230e928b0fccdfe04f669626a2949cb 1313 4d28b9212582d581270874da48e77153;0b99005df3f4a903367b41dce65b0ec6 SAMEA2659123 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714656/ERR714656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714656/ERR714656_2.fastq.gz 5294450 WGS GPS_ZA_1876-sc-2021473 RANDOM 178501605;181770931 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714656/ERR714656_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714656/ERR714656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714656/14412_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714656/14412_2#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714656/ERR714656_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714656/ERR714656_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714656/14412_2#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714656/14412_2#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 293075287;8869 ERS509151 ERX658578 GENOMIC 11883041 529445000 2015-01-08 SC_RUN_14412_2#24 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714656/14412_2#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714656/14412_2#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_2#24 ERR632909 SC_EXP_13414_8#42 241 5d57303ee4e3f4059c45b84bf3f43d14;a1517a88339dbc17cbc1710fa16ce00a 1313 817a45f0fd312f8bdf6e2d964b9ad76f;bc120af1198e1107bbf061400f6c8f54 SAMEA2553723 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632909/ERR632909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632909/ERR632909_2.fastq.gz 4038350 WGS GPS_ZA_659-sc-1950803 RANDOM 127931961;131933213 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632909/ERR632909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632909/ERR632909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632909/13414_8#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632909/13414_8#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632909/ERR632909_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632909/ERR632909_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632909/13414_8#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632909/13414_8#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 209799211;6759 ERS464224 ERX589463 GENOMIC 10631098 403835000 2014-09-23 SC_RUN_13414_8#42 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632909/13414_8#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632909/13414_8#42.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#42 ERR570428 SC_EXP_12837_5#27 238 f94d25b7c87bf19df6ed97c12aa82bcb;94301b7a7e946e7751a36e2113cdeb63 1313 e944a0c04a6b2315fe817f969bac5643;dcbbd197f9b8be427a91170170f997cd SAMEA2434791 2014-07-28 ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570428/ERR570428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570428/ERR570428_2.fastq.gz 5952830 WGS SA_GPS_SP686-sc-1895857 RANDOM 195323521;200200379 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570428/ERR570428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR570/ERR570428/ERR570428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570428/12837_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570428/12837_5#27.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570428/ERR570428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR570/ERR570428/ERR570428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570428/12837_5#27.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR570/ERR570428/12837_5#27.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 324375852;9902 ERS428968 ERX529417 GENOMIC 9993241 595283000 2014-07-28 SC_RUN_12837_5#27 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570428/12837_5#27.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR570/ERR570428/12837_5#27.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA337204 12837_5#27 ERR600480 SC_EXP_13415_5#76 246 dc4e79eecd2aa5efad5f5c49a21e58a7;d950c5fdf92204b7166a6fb735f175c5 1313 f80393c4b2e161e2e04f4b7e7fc99641;c6e990388fe0cf2bd1807a0727f602a6 SAMEA2553995 2014-09-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600480/ERR600480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600480/ERR600480_2.fastq.gz 4489454 WGS GPS_ZA_884-sc-1951030 RANDOM 143147412;150058961 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600480/ERR600480_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR600/ERR600480/ERR600480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600480/13415_5#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600480/13415_5#76.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600480/ERR600480_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR600/ERR600480/ERR600480_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600480/13415_5#76.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR600/ERR600480/13415_5#76.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238837405;7477 ERS464496 ERX557309 GENOMIC 10646235 448945400 2014-09-16 SC_RUN_13415_5#76 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600480/13415_5#76.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR600/ERR600480/13415_5#76.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA358074 13415_5#76 ERR563838 SC_EXP_12754_2#84 209 c3fbd1efcd4cf49e9a04735a734b071b;6c095e8f2c25af0e2caad2f7988872b1 1313 4d2282df1b370ae30d3044b06bfdc85c;f9bdf0236e1cacadb20ee017eecd995e SAMEA2383104 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563838/ERR563838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563838/ERR563838_2.fastq.gz 4583930 WGS 2100262_II-sc-1870354 RANDOM 150311392;155618012 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563838/ERR563838_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563838/ERR563838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563838/12754_2#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563838/12754_2#84.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563838/ERR563838_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563838/ERR563838_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563838/12754_2#84.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563838/12754_2#84.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 250476645;7725 ERS409429 ERX522863 GENOMIC 9918613 458393000 2014-07-16 SC_RUN_12754_2#84 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563838/12754_2#84.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563838/12754_2#84.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#84 ERR563795 SC_EXP_12754_2#41 209 5505d03f16324332ab55ef00a40149e4;5c4d94872efebd46ca42ee191a3b2e26 1313 587b48ba9dde5fab50c9c9cde31f5e69;90017c21eab252f80930453ed2450973 SAMEA2383061 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563795/ERR563795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563795/ERR563795_2.fastq.gz 5099276 WGS 2093029_II-sc-1870311 RANDOM 167408343;172525670 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563795/ERR563795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563795/ERR563795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563795/12754_2#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563795/12754_2#41.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563795/ERR563795_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563795/ERR563795_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563795/12754_2#41.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563795/12754_2#41.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 277507651;8605 ERS409386 ERX522820 GENOMIC 9918572 509927600 2014-07-16 SC_RUN_12754_2#41 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563795/12754_2#41.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563795/12754_2#41.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#41 ERR563948 SC_EXP_12754_4#4 232 6619f44056c8532a81b8f1172a74508d;5da960342744adefe86f0a8cd36b6c82 1313 c64105675b58ea7a7adbf8bf3bcacb24;6bb7a499005b7246cff09539a08af90d SAMEA2383214 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563948/ERR563948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563948/ERR563948_2.fastq.gz 5640096 WGS 2111306_II-sc-1870466 RANDOM 194372677;199962891 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563948/ERR563948_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563948/ERR563948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563948/12754_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563948/12754_4#4.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563948/ERR563948_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563948/ERR563948_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563948/12754_4#4.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563948/12754_4#4.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 323398888;9287 ERS409539 ERX522973 GENOMIC 9922240 564009600 2014-07-16 SC_RUN_12754_4#4 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563948/12754_4#4.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563948/12754_4#4.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_4#4 ERR563897 SC_EXP_12754_3#48 235 6629a5aa1181410290ffb905df49453b;f7b2b4f81458c1f86bd7ad113ed1c0fa 1313 b7fbf77f4558231f4e0c9a2e3b61ee60;8255738f575951afb76de2b247515c7f SAMEA2383163 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563897/ERR563897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563897/ERR563897_2.fastq.gz 4736076 WGS 2104370_II-sc-1870414 RANDOM 164124162;168049496 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563897/ERR563897_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563897/ERR563897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563897/12754_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563897/12754_3#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563897/ERR563897_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563897/ERR563897_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563897/12754_3#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563897/12754_3#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 273711259;7742 ERS409488 ERX522922 GENOMIC 9922099 473607600 2014-07-16 SC_RUN_12754_3#48 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563897/12754_3#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563897/12754_3#48.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#48 ERR563903 SC_EXP_12754_3#54 235 be182911a665ff750b3f808d5ae5550b;7658413b58b0cd458d8d77205ca7d5a8 1313 602ffdae8ada4b7de07ee29231a9297e;cd1f65e05fbaf3d416461741919007fa SAMEA2383169 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563903/ERR563903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563903/ERR563903_2.fastq.gz 4656034 WGS 2110192_II-sc-1870420 RANDOM 157269447;163108421 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563903/ERR563903_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563903/ERR563903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563903/12754_3#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563903/12754_3#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563903/ERR563903_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563903/ERR563903_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563903/12754_3#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563903/12754_3#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 261885421;7756 ERS409494 ERX522928 GENOMIC 9922076 465603400 2014-07-16 SC_RUN_12754_3#54 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563903/12754_3#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563903/12754_3#54.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#54 ERR563793 SC_EXP_12754_2#39 209 c48fa129656e9e18d6301bf4de4c5dda;ed840f1d866416ee8ba13c3fca1f073f 1313 7de4a6e75b04eb78cb12251d2f573868;37d9f4fabfdb943cf2a8783ea916fcaa SAMEA2383059 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563793/ERR563793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563793/ERR563793_2.fastq.gz 5121190 WGS 2092630_II-sc-1870309 RANDOM 170325180;177072129 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563793/ERR563793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563793/ERR563793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563793/12754_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563793/12754_2#39.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563793/ERR563793_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563793/ERR563793_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563793/12754_2#39.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563793/12754_2#39.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 283474505;8493 ERS409384 ERX522818 GENOMIC 9918643 512119000 2014-07-16 SC_RUN_12754_2#39 77 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563793/12754_2#39.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563793/12754_2#39.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_2#39 ERR563944 SC_EXP_12754_3#95 235 4e2c74259bde46903d386b67a0488dcf;96128474b6dd36f12013c615bdff61a4 1313 d399272b986a3c85d6b0d5860ec6466a;275f52d4694fc1b7acb72969e905e744 SAMEA2383210 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563944/ERR563944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563944/ERR563944_2.fastq.gz 5064196 WGS 2111269_II-sc-1870461 RANDOM 170132645;174276999 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563944/ERR563944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563944/ERR563944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563944/12754_3#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563944/12754_3#95.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563944/ERR563944_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563944/ERR563944_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563944/12754_3#95.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563944/12754_3#95.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 282359399;8390 ERS409535 ERX522969 GENOMIC 9922093 506419600 2014-07-16 SC_RUN_12754_3#95 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563944/12754_3#95.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563944/12754_3#95.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#95 ERR563873 SC_EXP_12754_3#24 235 67949a09feb32aba808498d76593e473;e50714214dffb990890da7907c4345fa 1313 598545e0d18592b8adbe29843ae20ac7;155afc80a5c8c3563d94a92eb8306bee SAMEA2383139 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563873/ERR563873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563873/ERR563873_2.fastq.gz 5397230 WGS 2103279_II-sc-1870390 RANDOM 179615823;185379473 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563873/ERR563873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563873/ERR563873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563873/12754_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563873/12754_3#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563873/ERR563873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563873/ERR563873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563873/12754_3#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563873/12754_3#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 299596078;9069 ERS409464 ERX522898 GENOMIC 9922096 539723000 2014-07-16 SC_RUN_12754_3#24 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563873/12754_3#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563873/12754_3#24.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#24 ERR563882 SC_EXP_12754_3#33 235 b499e85e58c92637d5b3d2b3d94086f1;650d134e6379c6f5792f14ff02037118 1313 6073e0c5f13941337e5d38664e8bd1eb;8b4db63954ba7bbaa3d428e6dbf2799c SAMEA2383148 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563882/ERR563882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563882/ERR563882_2.fastq.gz 4203342 WGS 2103573_II-sc-1870399 RANDOM 139930341;144017323 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563882/ERR563882_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563882/ERR563882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563882/12754_3#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563882/12754_3#33.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563882/ERR563882_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563882/ERR563882_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563882/12754_3#33.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563882/12754_3#33.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 232266498;7060 ERS409473 ERX522907 GENOMIC 9922014 420334200 2014-07-16 SC_RUN_12754_3#33 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563882/12754_3#33.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563882/12754_3#33.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_3#33 ERR559326 SC_EXP_12718_4#60 233 ef189e549966708e1a1cd572bc686c57;1d68f2d24e50403ec2c2ff0294c92cc9 1313 27115c49966524ad25792cf627182b84;c10954505e52845dc5800e54b016b96b SAMEA2382795 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559326/ERR559326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559326/ERR559326_2.fastq.gz 4934426 WGS 2020051_II-sc-1870042 RANDOM 153087561;159098216 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559326/ERR559326_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559326/ERR559326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559326/12718_4#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559326/12718_4#60.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559326/ERR559326_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559326/ERR559326_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559326/12718_4#60.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559326/12718_4#60.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 253650080;8214 ERS409120 ERX518362 GENOMIC 9918311 493442600 2014-07-10 SC_RUN_12718_4#60 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559326/12718_4#60.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559326/12718_4#60.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#60 ERR559396 SC_EXP_12718_5#35 231 65aa932fdfe1976815c7e43b667a4bfc;414c22a5cdec6bb8167d381b2f46e6fa 1313 b0a3b8b8d96246dcbf40ec9374718701;b046622f6a79552339b781af3bb3ba62 SAMEA2382865 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559396/ERR559396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559396/ERR559396_2.fastq.gz 5241268 WGS 2070237_II-sc-1870113 RANDOM 161826317;169210527 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559396/ERR559396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559396/ERR559396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559396/12718_5#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559396/12718_5#35.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559396/ERR559396_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559396/ERR559396_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559396/12718_5#35.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559396/12718_5#35.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 270175900;8524 ERS409190 ERX518432 GENOMIC 9918393 524126800 2014-07-10 SC_RUN_12718_5#35 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559396/12718_5#35.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559396/12718_5#35.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#35 ERR559435 SC_EXP_12718_5#74 231 0211aba1c10aca4dca673f347dbae767;f9b094cc811276d270a0dfe57059760b 1313 f76695c477e29f061441d7984210266f;ca43a20fab495665c0fc1c7478c67df2 SAMEA2382904 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559435/ERR559435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559435/ERR559435_2.fastq.gz 4039070 WGS 2071087_II-sc-1870152 RANDOM 121958068;128280001 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559435/ERR559435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559435/ERR559435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559435/12718_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559435/12718_5#74.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559435/ERR559435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559435/ERR559435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559435/12718_5#74.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559435/12718_5#74.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 203865913;6751 ERS409229 ERX518471 GENOMIC 9918386 403907000 2014-07-10 SC_RUN_12718_5#74 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559435/12718_5#74.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559435/12718_5#74.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_5#74 ERR559304 SC_EXP_12718_4#38 233 d93a2d587a9da3b9875dd2df0237786a;088e362b40cb527faf1d07e75b479818 1313 fe55e3645989f725bfc58c3010ce0191;b6449a7d47a80767d072d4f4ed112787 SAMEA2382773 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559304/ERR559304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559304/ERR559304_2.fastq.gz 5098336 WGS 2010827_II-sc-1870020 RANDOM 156871765;164295441 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559304/ERR559304_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559304/ERR559304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559304/12718_4#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559304/12718_4#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559304/ERR559304_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559304/ERR559304_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559304/12718_4#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559304/12718_4#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 260109845;8602 ERS409098 ERX518340 GENOMIC 9918332 509833600 2014-07-10 SC_RUN_12718_4#38 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559304/12718_4#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559304/12718_4#38.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#38 ERR559276 SC_EXP_12718_4#10 233 2acebfd7e8715b63e5a71d89f5b031b2;5027b17ffa5a3e0e0456d88fd15520ac 1313 b83c0a29b9cfdeb8a46af5ee11c4cb15;4e7357ee15e6df40d5db48e8a3994137 SAMEA2382745 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559276/ERR559276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559276/ERR559276_2.fastq.gz 4353902 WGS 2002167_II-sc-1869992 RANDOM 137837213;143825129 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559276/ERR559276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559276/ERR559276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559276/12718_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559276/12718_4#10.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559276/ERR559276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559276/ERR559276_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559276/12718_4#10.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559276/12718_4#10.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 228254247;7143 ERS409070 ERX518312 GENOMIC 9918281 435390200 2014-07-10 SC_RUN_12718_4#10 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559276/12718_4#10.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559276/12718_4#10.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#10 ERR554974 SC_EXP_12673_7#48 217 5faa3be17770040dce63880cc91942e4;4ac794ccbbbf4b7411d977cdb9c86965 1313 288b48566703086e9942a0a633b4b615;3ca16dcf5bfa6111fd6886ddc2e0d12f SAMEA2382688 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554974/ERR554974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554974/ERR554974_2.fastq.gz 4828472 WGS 2000223_II-sc-1869934 RANDOM 161339850;181322745 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554974/ERR554974_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554974/ERR554974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554974/12673_7#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554974/12673_7#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554974/ERR554974_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554974/ERR554974_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554974/12673_7#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554974/12673_7#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 282515652;8051 ERS409013 ERX514043 GENOMIC 9799083 482847200 2014-07-02 SC_RUN_12673_7#48 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554974/12673_7#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554974/12673_7#48.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#48 ERR554973 SC_EXP_12673_7#47 217 55ffeab3fd69679965d1724368e7e6a2;3d1c9d81b8f12a4b1d8c2cfbec55f4db 1313 bd3b6053f876d833b26f51e88042f81e;8a90ddb08b00f35581ac1896e30d9d9f SAMEA2382687 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554973/ERR554973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554973/ERR554973_2.fastq.gz 4855726 WGS 2000188_II-sc-1869933 RANDOM 161810441;181616147 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554973/ERR554973_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554973/ERR554973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554973/12673_7#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554973/12673_7#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554973/ERR554973_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554973/ERR554973_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554973/12673_7#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554973/12673_7#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 282555781;8112 ERS409012 ERX514042 GENOMIC 9799071 485572600 2014-07-02 SC_RUN_12673_7#47 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554973/12673_7#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554973/12673_7#47.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 12673_7#47 ERR559320 SC_EXP_12718_4#54 233 332d3b3b097568d74823a040c3a4c7d1;143437ce6af2b346614cb21ea9b14d3d 1313 064fd054b75e80d311cdb13675420847;26fe486121f1146273b9a15e8e0d95df SAMEA2382789 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559320/ERR559320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559320/ERR559320_2.fastq.gz 4635044 WGS 2012311_II-sc-1870036 RANDOM 142515464;149656492 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559320/ERR559320_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559320/ERR559320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559320/12718_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559320/12718_4#54.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559320/ERR559320_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559320/ERR559320_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559320/12718_4#54.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559320/12718_4#54.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 236861566;7761 ERS409114 ERX518356 GENOMIC 9918334 463504400 2014-07-10 SC_RUN_12718_4#54 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559320/12718_4#54.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559320/12718_4#54.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#54 ERR505861 SC_EXP_12291_5#59 230 9448ce0bc02da5296a7e0fb09e8776b4;260a3d175183d7adb1c9d72b49d0fd50 1313 ec4e520fc077bcc3471dda3eb89c3982;657a996bb68b910cb988c376f98593b6 SAMEA2336081 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505861/ERR505861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505861/ERR505861_2.fastq.gz 4855938 WGS 2009212611-sc-1811011 RANDOM 144895872;150815204 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505861/ERR505861_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505861/ERR505861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505861/12291_5#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505861/12291_5#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505861/ERR505861_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505861/ERR505861_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505861/12291_5#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505861/12291_5#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 238380178;8049 ERS394275 ERX471218 GENOMIC 9446407 485593800 2014-05-19 SC_RUN_12291_5#59 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505861/12291_5#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505861/12291_5#59.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#59 ERR554873 SC_EXP_12673_6#42 221 1f061a524f12020027dfb7cd2886e883;9cf557495937c296391bb3c0698aa233 1313 a1d29af841c8b5308a2e0d0809beed0c;dbde5566ed83a7d92f017ffc9b99151d SAMEA2382587 2014-07-02 ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554873/ERR554873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554873/ERR554873_2.fastq.gz 4588020 WGS 2120292-sc-1869832 RANDOM 150313877;170609659 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554873/ERR554873_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR554/ERR554873/ERR554873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554873/12673_6#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554873/12673_6#42.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554873/ERR554873_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR554/ERR554873/ERR554873_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554873/12673_6#42.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR554/ERR554873/12673_6#42.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 263607976;7577 ERS408912 ERX513942 GENOMIC 9798914 458802000 2014-07-02 SC_RUN_12673_6#42 81 fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554873/12673_6#42.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR554/ERR554873/12673_6#42.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA324397 ERR461895 SC_EXP_11893_1#71 234 244708885a33cfc2b6cdbf4019f97dd9;39654f45b0a9ba2d905b4b9b0bd7f258 1313 29561a5a5bfa091a2596d02bce19c872;f30a2318db37b4aa5cd8a368197928f7 SAMEA2238830 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461895/ERR461895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461895/ERR461895_2.fastq.gz 4385452 WGS 2103573-sc-2013-11-05T12:03:08Z-1750193 RANDOM 143703008;148596086 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461895/ERR461895_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461895/ERR461895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461895/11893_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461895/11893_1#71.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461895/ERR461895_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461895/ERR461895_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461895/11893_1#71.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461895/11893_1#71.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 238734374;7358 ERS367642 ERX428236 GENOMIC 9028204 438545200 2014-03-18 SC_RUN_11893_1#71 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461895/11893_1#71.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461895/11893_1#71.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#71 ERR505850 SC_EXP_12291_5#48 230 9ece7bcf741a619788a09af0e52c65e7;cd3c1744db00b3e041470acfb85115c3 1313 0fd6825fed2e1b168861cb58d348fc4a;3f22675bf16aadfe1c079f3df80f6f40 SAMEA2336070 2014-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505850/ERR505850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505850/ERR505850_2.fastq.gz 4421566 WGS 2009208012-sc-1811000 RANDOM 136694612;142125565 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505850/ERR505850_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR505/ERR505850/ERR505850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505850/12291_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505850/12291_5#48.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505850/ERR505850_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR505/ERR505850/ERR505850_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505850/12291_5#48.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR505/ERR505850/12291_5#48.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 227316247;7174 ERS394264 ERX471207 GENOMIC 9446465 442156600 2014-05-19 SC_RUN_12291_5#48 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505850/12291_5#48.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR505/ERR505850/12291_5#48.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA312490 12291_5#48 ERR461883 SC_EXP_11893_1#59 234 a7713110f825788622326beaff0e5352;19eb410db65f3a46455f5ac83a3704a8 1313 358a4b30a9be4c538a1a715fb67ddf83;a7ccc3032eda88caed73aa8df755ad6c SAMEA2238817 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461883/ERR461883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461883/ERR461883_2.fastq.gz 4337274 WGS 2103279-sc-2013-11-05T12:02:55Z-1750180 RANDOM 142438379;147342980 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461883/ERR461883_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461883/ERR461883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461883/11893_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461883/11893_1#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461883/ERR461883_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461883/ERR461883_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461883/11893_1#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461883/11893_1#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 235409767;7262 ERS367629 ERX428224 GENOMIC 9028155 433727400 2014-03-18 SC_RUN_11893_1#59 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461883/11893_1#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461883/11893_1#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#59 ERR461610 SC_EXP_11861_3#59 226 e99cea931632bcc1ea6568f66afab22d;b5728c58f857c2fe17c705d893956cb5 1313 afd4aa0cd9cf095594496bc17ac9385f;ecc31655cc75f6c73c998f5389707f46 SAMEA2238911 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461610/ERR461610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461610/ERR461610_2.fastq.gz 4441328 WGS 2110899-sc-2013-11-05T12:04:46Z-1750275 RANDOM 144035936;151015520 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461610/ERR461610_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461610/ERR461610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461610/11861_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461610/11861_3#59.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461610/ERR461610_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461610/ERR461610_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461610/11861_3#59.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461610/11861_3#59.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 240173719;7340 ERS367723 ERX427951 GENOMIC 9016237 444132800 2014-03-18 SC_RUN_11861_3#59 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461610/11861_3#59.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461610/11861_3#59.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 ERR2091103 SC_EXP_22841_3#182 392 dc2b935a07c487740df7a00caac7056a;e00f92f4c215aa77fe35d7aa56e00d27 1313 99b171b3243ab0acfdddf84dcc265e7f;9e260457a9bf233bbc021966c53370c7 SAMEA104035964 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091103/ERR2091103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091103/ERR2091103_2.fastq.gz 2764932 WGS cbd441a0-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 59597992;65711068 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091103/ERR2091103_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091103/ERR2091103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091103/22841_3#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091103/22841_3#182.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091103/ERR2091103_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091103/ERR2091103_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091103/22841_3#182.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091103/22841_3#182.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 88858836;4561 ERS1699857 ERX2147897 GENOMIC DN483670V:A12 345616500 2017-08-08 SC_RUN_22841_3#182 99 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091103/22841_3#182.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091103/22841_3#182.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#182 ERR2090428 SC_EXP_22667_7#156 428 37f4b8789c0c2e6efdfeb565bbc11a2e;5a942a4de1129a3957f40ee20a48e155 1313 5035bc4e37cb637fe906d5ac9822339e;b7a7222fc0f6968d2e2b788af6104f83 SAMEA104035155 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090428/ERR2090428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090428/ERR2090428_2.fastq.gz 3547582 WGS 883d3f50-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 70212628;74535237 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090428/ERR2090428_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2090428/ERR2090428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090428/22667_7#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090428/22667_7#156.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090428/ERR2090428_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2090428/ERR2090428_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090428/22667_7#156.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2090428/22667_7#156.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 101691864;5742 ERS1699048 ERX2147222 GENOMIC DN486303N:E8 443447750 2017-08-08 SC_RUN_22667_7#156 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090428/22667_7#156.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2090428/22667_7#156.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22667_7#156 ERR2091043 SC_EXP_22841_3#122 400 ff479cc59de6b3e34dd8bcb829295d4c;743e31a5567df3c53eeaaa56a75d3257 1313 230adee2edd544e056133fb640047d70;ae6e1b88d6d560a1a54561ec7e5211d9 SAMEA104035900 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091043/ERR2091043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091043/ERR2091043_2.fastq.gz 2728682 WGS c9608280-1f66-11e7-b93e-3c4a9275d6c8 RANDOM 61479966;65398725 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091043/ERR2091043_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/003/ERR2091043/ERR2091043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091043/22841_3#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091043/22841_3#122.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091043/ERR2091043_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/003/ERR2091043/ERR2091043_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091043/22841_3#122.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2091043/22841_3#122.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 90065071;4467 ERS1699793 ERX2147837 GENOMIC DN483670V:E4 341085250 2017-08-08 SC_RUN_22841_3#122 104 fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091043/22841_3#122.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2091043/22841_3#122.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 22841_3#122 ERR2089534 SC_EXP_21999_8#89 441 2f9e508ba755d0749a8186c3dd8c6568;299072e454af44fa0c3476ad32e287a6 1313 ffbb86d09f6b4f661fa2ba2db816527a;e177409f6c955cb182a34ddc57b26799 SAMEA104154802 2017-08-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089534/ERR2089534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089534/ERR2089534_2.fastq.gz 570504 WGS 72eb2ba0-c37a-11e6-b158-3c4a9275d6c8 RANDOM 11935683;12551009 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089534/ERR2089534_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR208/004/ERR2089534/ERR2089534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089534/21999_8#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089534/21999_8#89.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089534/ERR2089534_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR208/004/ERR2089534/ERR2089534_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089534/21999_8#89.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR208/ERR2089534/21999_8#89.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 15252612;965 ERS1813820 ERX2146328 GENOMIC DN476960M:A1 71313000 2017-08-08 SC_RUN_21999_8#89 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089534/21999_8#89.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR208/ERR2089534/21999_8#89.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA984053 21999_8#89 ERR1788363 SC_EXP_21127_1#166 435 eb1059ec666a22207ed117253e293160;5381417e30c2dd7a86a7eee4678da656 1313 669ac0819af8557ca2b1d4ed6bb2b8c2;3534241f7f54adde5e1d32cd366aead9 SAMEA4388015 2017-01-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788363/ERR1788363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788363/ERR1788363_2.fastq.gz 2162982 WGS 4a78bab0-5256-11e6-9a3d-3c4a9275d6c8 RANDOM 40723159;42580352 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788363/ERR1788363_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/003/ERR1788363/ERR1788363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788363/21127_1#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788363/21127_1#166.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/003/ERR1788363/ERR1788363_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR178/003/ERR1788363/ERR1788363_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788363/21127_1#166.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR178/ERR1788363/21127_1#166.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 59410478;3626 ERS1299464 ERX1852086 GENOMIC DN465134A:H9 270372750 2017-01-11 SC_RUN_21127_1#166 84 fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788363/21127_1#166.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR178/ERR1788363/21127_1#166.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA787540 21127_1#166 ERR1756453 SC_EXP_20925_3#68 418 82e7f15cfc38653c583ca961e1284cb2;5b8753243cb72e67107749662495519e 1313 d238b8c64e1a22c6604249d876eb0cfc;cda90442b50a1fa633c2fe815a3eb4e1 SAMEA4035180 2016-12-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/003/ERR1756453/ERR1756453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/003/ERR1756453/ERR1756453_2.fastq.gz 5148350 WGS 3d3ede70-cfec-11e5-bc69-3c4a9275d6c6 RANDOM 97031031;107901784 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/003/ERR1756453/ERR1756453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR175/003/ERR1756453/ERR1756453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756453/20925_3#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756453/20925_3#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/003/ERR1756453/ERR1756453_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR175/003/ERR1756453/ERR1756453_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756453/20925_3#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR175/ERR1756453/20925_3#68.cram.crai Illumina HiSeq 2500 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 157401342;8475 ERS1206290 ERX1823473 GENOMIC DN461288B:E9 643543750 2016-12-13 SC_RUN_20925_3#68 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756453/20925_3#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR175/ERR1756453/20925_3#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2500 paired end sequencing ERA775602 20925_3#68 ERR1214668 SC_EXP_18090_2#160 454 93fe278d70faca5476737349ecee8e0e;fc0ad5bc3a642e7b1744c25774552749 1313 497e5f58418591f44c3d692239d1d9a6;b23ae9ff8d51992a9808a7d35b121746 SAMEA3431620 2016-01-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214668/ERR1214668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214668/ERR1214668_2.fastq.gz 2689862 WGS GPS_HK_164-sc-2296841 RANDOM 52444565;57128811 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214668/ERR1214668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR121/008/ERR1214668/ERR1214668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214668/18090_2#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214668/18090_2#160.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214668/ERR1214668_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR121/008/ERR1214668/ERR1214668_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214668/18090_2#160.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR121/ERR1214668/18090_2#160.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 77310985;4501 ERS740905 ERX1286881 GENOMIC 15080044 336232750 2016-01-19 SC_RUN_18090_2#160 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214668/18090_2#160.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR121/ERR1214668/18090_2#160.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA553491 18090_2#160 ERR1202212 SC_EXP_17870_7#142 463 00f06e787e84632ac95e58ccaa941362;97c0c8cf3aa1f98abef6450c85570492 1313 b2e47b321e9502323e2cafcdbbbcc593;e82050f3e817b3f0238148d68e5a174d SAMEA3389725 2016-01-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202212/ERR1202212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202212/ERR1202212_2.fastq.gz 2430846 WGS GPS_MW_3238-sc-2295968 RANDOM 46857255;49760564 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202212/ERR1202212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/002/ERR1202212/ERR1202212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202212/17870_7#142.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202212/17870_7#142.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202212/ERR1202212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR120/002/ERR1202212/ERR1202212_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202212/17870_7#142.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR120/ERR1202212/17870_7#142.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 72574967;4079 ERS725828 ERX1274454 GENOMIC 14978448 303855750 2016-01-12 SC_RUN_17870_7#142 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202212/17870_7#142.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR120/ERR1202212/17870_7#142.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA552047 17870_7#142 ERR1065705 SC_EXP_17150_4#66 458 f781996584a2e9991fbf28862c7c868d;efa292c2ab756416537526eac16deb72 1313 557c25d577748e7d0119a2ca7ed1a58a;1ef5d38a36b564da4566503bc1c9fb9f SAMEA3353661 2015-10-13 ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065705/ERR1065705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065705/ERR1065705_2.fastq.gz 5908492 WGS GPS_ZA_carriage_SP1582-sc-2278263 RANDOM 119291815;117141809 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065705/ERR1065705_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR106/005/ERR1065705/ERR1065705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065705/17150_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065705/17150_4#66.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065705/ERR1065705_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR106/005/ERR1065705/ERR1065705_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065705/17150_4#66.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR106/ERR1065705/17150_4#66.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 184083798;9638 ERS708016 ERX1145855 GENOMIC 14436414 738561500 2015-10-13 SC_RUN_17150_4#66 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065705/17150_4#66.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR106/ERR1065705/17150_4#66.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA524476 17150_4#66 ERR997557 SC_EXP_16399_6#16 220 294bb51201a30a74c046ab997d20b151;67ee6aa1c81576ab9d8d9e5e6e2cab97 1313 0b383cf84d8b78e916ace19f03195d9d;6b5b5f4f48ee9c140a971e6ab337586e SAMEA3309593 2015-09-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997557/ERR997557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997557/ERR997557_2.fastq.gz 5962772 WGS GPS_GM_1612-sc-2206395 RANDOM 202820248;209751587 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997557/ERR997557_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR997/ERR997557/ERR997557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997557/16399_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997557/16399_6#16.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997557/ERR997557_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR997/ERR997557/ERR997557_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997557/16399_6#16.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR997/ERR997557/16399_6#16.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 337526047;9490 ERS686055 ERX1076593 GENOMIC 13835450 596277200 2015-09-04 SC_RUN_16399_6#16 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997557/16399_6#16.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR997/ERR997557/16399_6#16.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA475222 16399_6#16 ERR884380 SC_EXP_15682_1#82 218 23161e9316d193df04b27bcb56ded3a9;6d1b0a37cb13ca5641f97fd91bf5514d 1313 61462e200de05f96a97d4effc9fc34ac;a13acfad2797dcf20905a57d3e92a91f SAMEA3176085 2015-05-19 ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884380/ERR884380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884380/ERR884380_2.fastq.gz 3733446 WGS GPS_PL_1011_11-sc-2191142 RANDOM 123164658;129491983 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884380/ERR884380_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR884/ERR884380/ERR884380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884380/15682_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884380/15682_1#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884380/ERR884380_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR884/ERR884380/ERR884380_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884380/15682_1#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR884/ERR884380/15682_1#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 205546373;6138 ERS629033 ERX963783 GENOMIC 13029526 373344600 2015-05-21 SC_RUN_15682_1#82 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884380/15682_1#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR884/ERR884380/15682_1#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA439857 15682_1#82 ERR925095 SC_EXP_15995_1#70 231 f4f83db04dd979588994ec8a00722e5a;1be271ee359d8ccd9d35968c0e8be208 1313 1ad964dbf1fe2ff20144cfb6ddaa1df0;8192fa1e6c29eb12fe33261353e62bef SAMEA3206882 2015-06-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925095/ERR925095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925095/ERR925095_2.fastq.gz 2001044 WGS GPS_ZA_carriage_SP164-sc-2191816 RANDOM 61546552;63896351 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925095/ERR925095_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR925/ERR925095/ERR925095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925095/15995_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925095/15995_1#70.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925095/ERR925095_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR925/ERR925095/ERR925095_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925095/15995_1#70.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR925/ERR925095/15995_1#70.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 101722842;3348 ERS638892 ERX1004370 GENOMIC 13241036 200104400 2015-06-23 SC_RUN_15995_1#70 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925095/15995_1#70.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR925/ERR925095/15995_1#70.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA450035 15995_1#70 ERR870013 SC_EXP_15531_4#11 207 2051507772ed4e49ee794945ed9940fa;758ed4879f78ca5730b13637e98c2e3e 1313 b34bd280522d866848c8d00430443367;ddaad73165b72217887fd067208a3546 SAMEA3171610 2015-05-06 ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870013/ERR870013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870013/ERR870013_2.fastq.gz 3601704 WGS GPS_MW_150619-sc-2140004 RANDOM 140285918;133974447 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870013/ERR870013_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR870/ERR870013/ERR870013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870013/15531_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870013/15531_4#11.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870013/ERR870013_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR870/ERR870013/ERR870013_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870013/15531_4#11.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR870/ERR870013/15531_4#11.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 226766080;5838 ERS626001 ERX949614 GENOMIC 12882806 360170400 2015-05-06 SC_RUN_15531_4#11 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870013/15531_4#11.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR870/ERR870013/15531_4#11.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA434982 15531_4#11 ERR876503 SC_EXP_15608_2#73 215 4d658f7266f6a38ab35c9d332a718c45;50a36279d01172eb791b18840850238f 1313 a2054e759b75ff7c4f5587b173a52b56;857a5bc2c0f3c637d0c1526a41f83f1e SAMEA3175718 2015-05-12 ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876503/ERR876503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876503/ERR876503_2.fastq.gz 6082544 WGS GPS_US_4068_98_R1-sc-2190767 RANDOM 184823872;191533116 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876503/ERR876503_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR876/ERR876503/ERR876503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876503/15608_2#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876503/15608_2#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876503/ERR876503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR876/ERR876503/ERR876503_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876503/15608_2#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR876/ERR876503/15608_2#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 303927294;9898 ERS628666 ERX956066 GENOMIC 13024174 608254400 2015-05-12 SC_RUN_15608_2#73 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876503/15608_2#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR876/ERR876503/15608_2#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA436682 15608_2#73 ERR862290 SC_EXP_15378_2#32 205 9e578785403e84a1aea64a72d8ed70d3;1c111a21028f4c46e526b85c7bc57582 1313 8d1c7069e40eee6bb4b644565baacdb2;150addf8fd495112bf2da03fef5241f7 SAMEA3172782 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862290/ERR862290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862290/ERR862290_2.fastq.gz 3219584 WGS GPS_GM_0918-sc-2190339 RANDOM 94350985;98581501 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862290/ERR862290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862290/ERR862290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862290/15378_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862290/15378_2#32.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862290/ERR862290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862290/ERR862290_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862290/15378_2#32.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862290/15378_2#32.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 153505275;5223 ERS627025 ERX941940 GENOMIC 12810521 321958400 2015-04-21 SC_RUN_15378_2#32 76 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862290/15378_2#32.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862290/15378_2#32.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_2#32 ERR751046 SC_EXP_14723_4#45 213 2faab5a21d6442a0391a58ad19adec81;efa349561543ab8f25002697d6a38759 1313 55e5bcccf643e1405b599f3088119353;4d658fc970a15f295548ddbba0e2b1c5 SAMEA2797346 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751046/ERR751046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751046/ERR751046_2.fastq.gz 5872080 WGS GPS_US_PATH5512-sc-2139337 RANDOM 220571988;224368190 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751046/ERR751046_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751046/ERR751046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751046/14723_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751046/14723_4#45.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751046/ERR751046_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751046/ERR751046_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751046/14723_4#45.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751046/14723_4#45.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 370902980;9390 ERS558957 ERX694728 GENOMIC 12133837 587208000 2015-02-03 SC_RUN_14723_4#45 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751046/14723_4#45.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751046/14723_4#45.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_4#45 ERR751025 SC_EXP_14723_4#24 213 59606c43a3ed34abe22e25c8a44bf068;568fee95cb0a1b19d4c40e17960b6a0f 1313 1f24d6418c20094b7143df319e7c6ac8;6463bf96498db39fc6fd9e0bf70b3d3c SAMEA2797287 2015-02-03 ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751025/ERR751025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751025/ERR751025_2.fastq.gz 6158362 WGS GPS_US_PATH5487-sc-2139316 RANDOM 229251082;233130476 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751025/ERR751025_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR751/ERR751025/ERR751025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751025/14723_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751025/14723_4#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751025/ERR751025_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR751/ERR751025/ERR751025_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751025/14723_4#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR751/ERR751025/14723_4#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 387316320;9867 ERS558898 ERX694707 GENOMIC 12133870 615836200 2015-02-03 SC_RUN_14723_4#24 72 fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751025/14723_4#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR751/ERR751025/14723_4#24.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA407414 14723_4#24 ERR862435 SC_EXP_15378_3#82 191 4459e5a3c6010c3be334073b871d227a;03697cd7d15765d6b594e43f10f39ea0 1313 b911a0d2f8e9015b0b99d94168fbef80;398e966542df42cbbe8eae0f9cd26d44 SAMEA3171119 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862435/ERR862435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862435/ERR862435_2.fastq.gz 9127974 WGS GPS_MW_1413-sc-2139682 RANDOM 327307407;339816922 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862435/ERR862435_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862435/ERR862435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862435/15378_3#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862435/15378_3#82.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862435/ERR862435_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862435/ERR862435_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862435/15378_3#82.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862435/15378_3#82.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 552491776;14266 ERS625510 ERX942085 GENOMIC 12815408 912797400 2015-04-21 SC_RUN_15378_3#82 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862435/15378_3#82.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862435/15378_3#82.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#82 ERR862383 SC_EXP_15378_3#30 191 144630cd15804a3897d3d616f1f6a94c;990fdd951bb486911f7abfd92191fbbc 1313 a98e0280765ec21aa4d2cb0b76ab347a;e7519014411ed869b6e42e423bc7cb87 SAMEA3171065 2015-04-21 ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862383/ERR862383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862383/ERR862383_2.fastq.gz 5266868 WGS GPS_MW_1732-sc-2139627 RANDOM 183546295;188949035 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862383/ERR862383_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR862/ERR862383/ERR862383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862383/15378_3#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862383/15378_3#30.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862383/ERR862383_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR862/ERR862383/ERR862383_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862383/15378_3#30.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR862/ERR862383/15378_3#30.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 305672039;8444 ERS625456 ERX942033 GENOMIC 12815449 526686800 2015-04-21 SC_RUN_15378_3#30 65 fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862383/15378_3#30.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR862/ERR862383/15378_3#30.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA432333 15378_3#30 ERR742365 SC_EXP_14673_1#38 214 e16122800d2585fe6966a556a048bac7;eb4d3f0045eb824d119d869b26e0557a 1313 4c77be0fbce906374decb5e7b69d5f73;e1e4a622d85e83e4a106cc892e2df8bc SAMEA2796446 2015-01-27 ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742365/ERR742365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742365/ERR742365_2.fastq.gz 5537978 WGS GPS_US_6025_03-sc-2138425 RANDOM 178298993;183463993 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742365/ERR742365_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR742/ERR742365/ERR742365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742365/14673_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742365/14673_1#38.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742365/ERR742365_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR742/ERR742365/ERR742365_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742365/14673_1#38.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR742/ERR742365/14673_1#38.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 292374391;8860 ERS558057 ERX686048 GENOMIC 12061742 553797800 2015-01-27 SC_RUN_14673_1#38 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742365/14673_1#38.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR742/ERR742365/14673_1#38.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA406018 14673_1#38 ERR714605 SC_EXP_14412_1#68 235 14824d0080cb4a1f91064d3bd00a55ab;3a4cfea39a373dc2d64b17ad3ce62400 1313 2f474bc827f8739b95c1f848945c7255;0fd77cb02856f40dfd3720bfdcb4d3cd SAMEA2658778 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714605/ERR714605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714605/ERR714605_2.fastq.gz 5366152 WGS GPS_ZA_1730-sc-2021387 RANDOM 194504587;198032250 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714605/ERR714605_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714605/ERR714605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714605/14412_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714605/14412_1#68.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714605/ERR714605_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714605/ERR714605_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714605/14412_1#68.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714605/14412_1#68.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 325366691;8677 ERS508806 ERX658527 GENOMIC 11839066 536615200 2015-01-08 SC_RUN_14412_1#68 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714605/14412_1#68.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714605/14412_1#68.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14412_1#68 ERR730595 SC_EXP_14555_3#77 227 6aeea4f543806c2abb37d9465f8d511d;aebdc74621691ffe4ac7e6fea5e9c3c3 1313 d3d89d50ad75859a17a8282714b3a1aa;a81d04330fde909a9644e47ea9b30447 SAMEA2658479 2015-01-14 ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730595/ERR730595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730595/ERR730595_2.fastq.gz 4403306 WGS GPS_ZA_1359-sc-2021084 RANDOM 145456395;150354392 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730595/ERR730595_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR730/ERR730595/ERR730595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730595/14555_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730595/14555_3#77.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730595/ERR730595_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR730/ERR730595/ERR730595_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730595/14555_3#77.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR730/ERR730595/14555_3#77.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 243924178;7141 ERS508507 ERX674541 GENOMIC 11820739 440330600 2015-01-14 SC_RUN_14555_3#77 74 fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730595/14555_3#77.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR730/ERR730595/14555_3#77.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA401023 14555_3#77 ERR714404 SC_EXP_14410_7#47 220 cb0e26012d5c52010d4a2facfdd12982;d6f563e3079aeabe152c9dee2d6eff4d 1313 a18d114504647a3cbfe465808dcd7816;1b38ed8b27763fab9299805c9ff34d04 SAMEA2627447 2015-01-08 ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714404/ERR714404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714404/ERR714404_2.fastq.gz 5551102 WGS GPS_GM_0480-sc-2003385 RANDOM 191853192;193114693 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714404/ERR714404_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR714/ERR714404/ERR714404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714404/14410_7#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714404/14410_7#47.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714404/ERR714404_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR714/ERR714404/ERR714404_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714404/14410_7#47.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR714/ERR714404/14410_7#47.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 316682617;9208 ERS497346 ERX658326 GENOMIC 11883226 555110200 2015-01-08 SC_RUN_14410_7#47 83 fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714404/14410_7#47.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR714/ERR714404/14410_7#47.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA398031 14410_7#47 ERR701808 SC_EXP_14257_1#31 234 a5210b37a006e9ab29e02ae673b01940;292518404d96c5b90d7c8ed3a4cf6a80 1313 21e6cf4bb6f74bc41841043361675ccb;26906558872b6a0c1d1bed5c092e4c06 SAMEA2658355 2014-12-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701808/ERR701808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701808/ERR701808_2.fastq.gz 5338088 WGS GPS_ZA_1408-sc-2020960 RANDOM 171279361;175676436 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701808/ERR701808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR701/ERR701808/ERR701808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701808/14257_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701808/14257_1#31.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701808/ERR701808_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR701/ERR701808/ERR701808_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701808/14257_1#31.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR701/ERR701808/14257_1#31.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 285599449;8720 ERS508383 ERX646071 GENOMIC 11814781 533808800 2014-12-16 SC_RUN_14257_1#31 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701808/14257_1#31.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR701/ERR701808/14257_1#31.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA394892 14257_1#31 ERR633074 SC_EXP_13415_8#52 232 f590cd022ef55104b8e2437dd1ae57fe;492c479019b75a2d3ec5459629d2ec19 1313 080237cbd21c5214008761e8904a4ae2;306616136e001666f3135a3cf3c9aac5 SAMEA2554259 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633074/ERR633074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633074/ERR633074_2.fastq.gz 4898932 WGS GPS_ZA_1148-sc-1951297 RANDOM 163897650;168120878 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633074/ERR633074_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR633/ERR633074/ERR633074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633074/13415_8#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633074/13415_8#52.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633074/ERR633074_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR633/ERR633074/ERR633074_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633074/13415_8#52.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR633/ERR633074/13415_8#52.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 272668506;8021 ERS464760 ERX589628 GENOMIC 10663348 489893200 2014-09-23 SC_RUN_13415_8#52 73 fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633074/13415_8#52.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR633/ERR633074/13415_8#52.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13415_8#52 ERR632917 SC_EXP_13414_8#50 241 bdb25b53009ec39e8332b38bc3f63f69;d1a690439c12247b6fb207066f9bf4ba 1313 a0c71726d2b0f5c5a3bc161a6fd19e06;cc3b46f84e9c58b2d4806731e9d150b9 SAMEA2553731 2014-09-23 ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632917/ERR632917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632917/ERR632917_2.fastq.gz 3807738 WGS GPS_ZA_667-sc-1950811 RANDOM 126247032;130701530 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632917/ERR632917_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR632/ERR632917/ERR632917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632917/13414_8#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632917/13414_8#50.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632917/ERR632917_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR632/ERR632917/ERR632917_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632917/13414_8#50.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR632/ERR632917/13414_8#50.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 210465605;6200 ERS464232 ERX589471 GENOMIC 10631099 380773800 2014-09-23 SC_RUN_13414_8#50 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632917/13414_8#50.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR632/ERR632917/13414_8#50.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA359491 13414_8#50 ERR563672 SC_EXP_12754_1#13 223 c235209f99656f5c962ea0f3d854ceee;a00bc34ae54602ff943225b8b32b5540 1313 5144788034503f3da9837a296473079d;5adc25fd9c84df72f0eb88b2c03d753a SAMEA2382938 2014-07-16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563672/ERR563672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563672/ERR563672_2.fastq.gz 5073832 WGS 2080058_II-sc-1870187 RANDOM 173662117;179471468 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563672/ERR563672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR563/ERR563672/ERR563672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563672/12754_1#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563672/12754_1#13.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563672/ERR563672_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR563/ERR563672/ERR563672_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563672/12754_1#13.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR563/ERR563672/12754_1#13.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 291348438;8108 ERS409263 ERX522697 GENOMIC 9918519 507383200 2014-07-16 SC_RUN_12754_1#13 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563672/12754_1#13.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR563/ERR563672/12754_1#13.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA330379 12754_1#13 ERR559317 SC_EXP_12718_4#51 233 3aad8740ecc56c95439ec0c7808788b7;2418740c5597a9a5b121753f2ea1bb00 1313 c229768feb768492920d8351c67fbe80;d3cb8034a520992895d91515a6fb0f0b SAMEA2382786 2014-07-09 ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559317/ERR559317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559317/ERR559317_2.fastq.gz 4967378 WGS 2012157_II-sc-1870033 RANDOM 161914728;169417503 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559317/ERR559317_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR559/ERR559317/ERR559317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559317/12718_4#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559317/12718_4#51.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559317/ERR559317_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR559/ERR559317/ERR559317_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559317/12718_4#51.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR559/ERR559317/12718_4#51.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 271009257;7960 ERS409111 ERX518353 GENOMIC 9918298 496737800 2014-07-10 SC_RUN_12718_4#51 80 fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559317/12718_4#51.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR559/ERR559317/12718_4#51.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA326707 12718_4#51 ERR461865 SC_EXP_11893_1#40 234 d2d17bd3e2d665a15ef2b4173f46b112;74a4d797092e77afeef9f195a7c935ba 1313 dd16e1f7cfd07c6be209a44bede0c07a;7e5184a45d42d4fab719a9561853bed2 SAMEA2238797 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461865/ERR461865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461865/ERR461865_2.fastq.gz 4039492 WGS 2102632-sc-2013-11-05T12:02:36Z-1750160 RANDOM 137065115;142049630 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461865/ERR461865_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461865/ERR461865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461865/11893_1#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461865/11893_1#40.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461865/ERR461865_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461865/ERR461865_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461865/11893_1#40.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461865/11893_1#40.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 229671271;6623 ERS367609 ERX428206 GENOMIC 9028212 403949200 2014-03-18 SC_RUN_11893_1#40 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461865/11893_1#40.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461865/11893_1#40.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11893_1#40 ERR461303 SC_EXP_11860_8#19 222 d098f51b9a347f816f4851e748740599;e5407b0c252774ae9ff33ae90e4e1c6e 1313 8fbf39dad91db98d17040397b99cd30c;de227b83de56e1f4710ba57532df5dd5 SAMEA2239153 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461303/ERR461303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461303/ERR461303_2.fastq.gz 4598930 WGS 2001006-sc-2013-11-05T12:08:50Z-1750524 RANDOM 148663756;157854511 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461303/ERR461303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461303/ERR461303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461303/11860_8#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461303/11860_8#19.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461303/ERR461303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461303/ERR461303_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461303/11860_8#19.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461303/11860_8#19.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 251543549;7409 ERS367965 ERX427644 GENOMIC 9015291 459893000 2014-03-18 SC_RUN_11860_8#19 85 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461303/11860_8#19.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461303/11860_8#19.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_8#19 ERR449232 SC_EXP_11826_1#46 238 7a4da1f1af550c96881ae9abda2622c3;a8442413d4c3d398566cb8896fe1212a 1313 f16bf7ed2c216b0ee86a526d0bf530c3;0cf7da3ac6e298f0e48a3c96915464cf SAMEA2149684 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449232/ERR449232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449232/ERR449232_2.fastq.gz 4456564 WGS 0892_99-sc-2013-07-03T13:33:19Z-1659318 RANDOM 147664284;152771474 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449232/ERR449232_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449232/ERR449232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449232/11826_1#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449232/11826_1#46.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449232/ERR449232_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449232/ERR449232_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449232/11826_1#46.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449232/11826_1#46.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 246805384;7262 ERS322491 ERX415604 GENOMIC 8949159 445656400 2014-03-04 SC_RUN_11826_1#46 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449232/11826_1#46.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449232/11826_1#46.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#46 ERR461029 SC_EXP_11860_5#24 210 13917d21bd4f22c26ebff2508bf03231;bb375b28dae04cb1961fcbbdc4e79e7d 1313 765de4c80e8cb9188e440928d36d7660;12d9d53d53d76be473a95212fcfe1fc7 SAMEA2238393 2014-03-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461029/ERR461029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461029/ERR461029_2.fastq.gz 2353886 WGS 2070673-sc-2013-11-05T11:55:41Z-1749752 RANDOM 65643163;69539708 CRAM;CRAI Streptococcus pneumoniae Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461029/ERR461029_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR461/ERR461029/ERR461029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461029/11860_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461029/11860_5#24.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461029/ERR461029_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR461/ERR461029/ERR461029_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461029/11860_5#24.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR461/ERR461029/11860_5#24.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB4909 ERP004245 107204429;3835 ERS367205 ERX427370 GENOMIC 9014569 235388600 2014-03-18 SC_RUN_11860_5#24 87 fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461029/11860_5#24.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR461/ERR461029/11860_5#24.cram.crai Integration_of_the_host_and_pathogen_genetics_in_bacterial_meningitis-sc-2013-11-04T14:41:11Z-2842 Illumina HiSeq 2000 paired end sequencing ERA294555 11860_5#24 ERR449162 SC_EXP_11822_1#73 252 d3e856d616b3fc3cab69a21ac548e906;db2bcf9128b810500c927e10e01595a2 1313 6d19eb8e2d6dac83eee27f93e9211ebd;40001e380da1aac514448282acb7b6ef SAMEA2162189 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449162/ERR449162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449162/ERR449162_2.fastq.gz 5790660 WGS 4380_03-sc-2013-07-03T13:34:54Z-1659362 RANDOM 194611245;202459458 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449162/ERR449162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449162/ERR449162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449162/11822_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449162/11822_1#73.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449162/ERR449162_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449162/ERR449162_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449162/11822_1#73.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449162/11822_1#73.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 327538808;9363 ERS322535 ERX415534 GENOMIC 8966775 579066000 2014-03-04 SC_RUN_11822_1#73 90 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449162/11822_1#73.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449162/11822_1#73.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11822_1#73 ERR449248 SC_EXP_11826_1#62 238 ae0df250be71bc2b1912d39f6a2a5fc8;e8add4e815a67fd8ac05088fea9895b9 1313 ab2c169987dd251859a605491790d2df;6f5cdc3e2c3007d60d11b4db9f8c66b1 SAMEA2152266 2014-03-04 ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449248/ERR449248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449248/ERR449248_2.fastq.gz 9065618 WGS 7585_99-sc-2013-07-03T13:33:55Z-1659335 RANDOM 303206006;318117305 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449248/ERR449248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR449/ERR449248/ERR449248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449248/11826_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449248/11826_1#62.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449248/ERR449248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR449/ERR449248/ERR449248_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449248/11826_1#62.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR449/ERR449248/11826_1#62.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 517069282;14531 ERS322508 ERX415620 GENOMIC 8949161 906561800 2014-03-04 SC_RUN_11826_1#62 91 fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449248/11826_1#62.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR449/ERR449248/11826_1#62.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA291792 11826_1#62 ERR438953 SC_EXP_11791_1#7 250 b5b0f810a1dade9d7c00c133ff9a477d;6e0f3f991f9929c19145a851c3af4ebf 1313 43550910aad50321c36be18195aea37b;e1642363f861c408ead99b88aeec4679 SAMEA2160618 2014-02-24 ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438953/ERR438953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438953/ERR438953_2.fastq.gz 7478944 WGS 1318_00-sc-2013-07-03T13:39:42Z-1659510 RANDOM 245995327;254015438 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438953/ERR438953_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR438/ERR438953/ERR438953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438953/11791_1#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438953/11791_1#7.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR438/ERR438953/ERR438953_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR438/ERR438953/ERR438953_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438953/11791_1#7.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR438/ERR438953/11791_1#7.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 416388958;12274 ERS322678 ERX405616 GENOMIC 8859138 747894400 2014-02-24 SC_RUN_11791_1#7 fasp.sra.ebi.ac.uk:/vol1/run/ERR438/ERR438953/11791_1#7.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR438/ERR438953/11791_1#7.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA287820 11791_1#7 ERR433976 SC_EXP_11679_1#12 216 22bd0eef70422472b215b8d5e1fa0bd8;33869c07562e4c046da9404ac10561ae 1313 7389c1bebf7e12c5883d5f97165a6b59;22124696642d7e20946be5f44e7c2415 SAMEA2203799 2014-02-18 ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433976/ERR433976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433976/ERR433976_2.fastq.gz 3743884 WGS 2009218384-sc-2013-10-09T11:49:38Z-1712388 RANDOM 118709511;123145831 CRAM;CRAI Streptococcus pneumoniae Global_Pneumococcal_Sequencing__GPS__study_I ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433976/ERR433976_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR433/ERR433976/ERR433976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433976/11679_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433976/11679_1#12.cram.crai ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433976/ERR433976_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR433/ERR433976/ERR433976_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433976/11679_1#12.cram;ftp.sra.ebi.ac.uk/vol1/run/ERR433/ERR433976/11679_1#12.cram.crai Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB3084 ERP001505 197421475;6159 ERS356303 ERX400251 GENOMIC 8801444 374388400 2014-02-18 SC_RUN_11679_1#12 86 fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433976/11679_1#12.cram;fasp.sra.ebi.ac.uk:/vol1/run/ERR433/ERR433976/11679_1#12.cram.crai Global_Pneumococcal_Sequencing__GPS__study_I-sc-2012-06-14T11:10:13Z-2245 Illumina HiSeq 2000 paired end sequencing ERA285994 11679_1#12 ERR048056 SC_EXP_6631_1#19 217 68acd55585e4858341ee1df6af104210 1313 3d1493d1001d249041795386717bafac;0211d595982e894f5d19d8c7727b6b54 SAMEA1023845 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048056/ERR048056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048056/ERR048056_2.fastq.gz 5281012 WGS SMRU331-sc-2011-01-27-1060520 RANDOM 308215245;306733113 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048056/ERR048056_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048056/ERR048056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048056/6631_1#19.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048056/ERR048056_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048056/ERR048056_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048056/6631_1#19.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 771582778 ERS019489 ERX025119 GENOMIC 2952118 792151800 2011-10-11 SC_RUN_6631_1#19 79 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048056/6631_1#19.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416 ERR054626 SC_EXP_6755_5#22 248 5ffa6ffad187725c82b00e3c4df1496b 1313 bf99c9d36c8ff8ff60ccb39c706b58bf;42aa1fe048bd81e6ea8bbfd1be82eecd SAMEA1025588 2011-11-15 ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054626/ERR054626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054626/ERR054626_2.fastq.gz 7675996 WGS SMRU1174-sc-2011-01-27-1061387 RANDOM 422449701;439672933 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054626/ERR054626_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR054/ERR054626/ERR054626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054626/6755_5#22.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054626/ERR054626_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR054/ERR054626/ERR054626_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR054/ERR054626/6755_5#22.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2395 ERP000485 1059234794 ERS020684 ERX031672 GENOMIC 3307634 1151399400 2011-11-15 SC_RUN_6755_5#22 70 fasp.sra.ebi.ac.uk:/vol1/run/ERR054/ERR054626/6755_5#22.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2011-01-19 Illumina HiSeq 2000 paired end sequencing ERA067559 Streptococcus pneumoniae Streptococcus pneumoniae ERR048120 SC_EXP_6631_4#11 234 edbea80e6f3c24cc0e7227a00313a5a6 1313 62cd80d92239d1f464c537a8ecefc897;809e525063ed3c09c05b619bceb5f5d1 SAMEA1023961 2011-10-11 ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048120/ERR048120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048120/ERR048120_2.fastq.gz 2821952 WGS SMRU443-sc-2011-01-27-1060632 RANDOM 161593217;150623904 BAM Streptococcus pneumoniae Streptococcus pneumoniae evolution and population structure during longitudinal sampling in a defined human population ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048120/ERR048120_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR048/ERR048120/ERR048120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048120/6631_4#11.bam ILLUMINA 2018-11-16 fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048120/ERR048120_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR048/ERR048120/ERR048120_2.fastq.gz ftp.sra.ebi.ac.uk/vol1/run/ERR048/ERR048120/6631_4#11.bam Illumina HiSeq 2000 PAIRED Wellcome Sanger Institute;SC PRJEB2357 ERP000435 398345067 ERS019601 ERX025183 GENOMIC 2952230 423292800 2011-10-11 SC_RUN_6631_4#11 78 fasp.sra.ebi.ac.uk:/vol1/run/ERR048/ERR048120/6631_4#11.bam Streptococcus_pneumoniae_evolution_and_population_structure_during_longitudinal_sampling_in_a_defined_human_population-sc-2010-12-14 Illumina HiSeq 2000 paired end sequencing ERA062416